AlfalfaGEDB | MS.gene21103

M. sativa cultivar XinJiangDaYe / MS.gene21103

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21103.t1	XP_013469106.1	98.5	137	2	0	1	137	1	137	1.40E-62	248.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21103.t1	A0A072VMA2	98.5	137	2	0	1	137	1	137	1.0e-62	248.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene21103	0.816412	5.60E-52	-1.69E-46
MS.gene04918	MS.gene21103	0.818683	1.72E-52	-1.69E-46
MS.gene04920	MS.gene21103	0.810952	8.92E-51	-1.69E-46
MS.gene049283	MS.gene21103	0.808829	2.56E-50	-1.69E-46
MS.gene049350	MS.gene21103	0.822375	2.45E-53	-1.69E-46
MS.gene049368	MS.gene21103	0.83033	3.12E-55	-1.69E-46
MS.gene049499	MS.gene21103	0.800055	1.72E-48	-1.69E-46
MS.gene049821	MS.gene21103	0.821023	5.03E-53	-1.69E-46
MS.gene049983	MS.gene21103	0.809441	1.89E-50	-1.69E-46
MS.gene050253	MS.gene21103	0.804419	2.18E-49	-1.69E-46
MS.gene050300	MS.gene21103	-0.80678	6.97E-50	-1.69E-46
MS.gene050654	MS.gene21103	0.814776	1.30E-51	-1.69E-46
MS.gene050752	MS.gene21103	0.8005	1.40E-48	-1.69E-46
MS.gene050838	MS.gene21103	0.850007	2.24E-60	-1.69E-46
MS.gene051003	MS.gene21103	0.84849	5.93E-60	-1.69E-46
MS.gene051233	MS.gene21103	0.814	1.93E-51	-1.69E-46
MS.gene051234	MS.gene21103	0.822893	1.86E-53	-1.69E-46
MS.gene051343	MS.gene21103	0.825982	3.48E-54	-1.69E-46
MS.gene051676	MS.gene21103	0.824327	8.57E-54	-1.69E-46
MS.gene051700	MS.gene21103	0.819329	1.23E-52	-1.69E-46
MS.gene051856	MS.gene21103	0.80073	1.26E-48	-1.69E-46
MS.gene05188	MS.gene21103	0.823177	1.59E-53	-1.69E-46
MS.gene051902	MS.gene21103	0.861108	1.29E-63	-1.69E-46
MS.gene051975	MS.gene21103	0.836281	1.03E-56	-1.69E-46
MS.gene052016	MS.gene21103	0.809457	1.87E-50	-1.69E-46
MS.gene052072	MS.gene21103	0.808963	2.39E-50	-1.69E-46
MS.gene052296	MS.gene21103	0.816164	6.37E-52	-1.69E-46
MS.gene052335	MS.gene21103	0.805835	1.10E-49	-1.69E-46
MS.gene052342	MS.gene21103	0.848999	4.28E-60	-1.69E-46
MS.gene052434	MS.gene21103	0.812707	3.70E-51	-1.69E-46
MS.gene052463	MS.gene21103	0.836765	7.72E-57	-1.69E-46
MS.gene052947	MS.gene21103	0.815706	8.06E-52	-1.69E-46
MS.gene053058	MS.gene21103	0.809796	1.58E-50	-1.69E-46
MS.gene053298	MS.gene21103	0.826095	3.27E-54	-1.69E-46
MS.gene053564	MS.gene21103	0.810203	1.30E-50	-1.69E-46
MS.gene053581	MS.gene21103	0.817759	2.79E-52	-1.69E-46
MS.gene053786	MS.gene21103	0.864875	8.88E-65	-1.69E-46
MS.gene054139	MS.gene21103	0.801537	8.59E-49	-1.69E-46
MS.gene054403	MS.gene21103	0.803079	4.14E-49	-1.69E-46
MS.gene05458	MS.gene21103	0.813222	2.86E-51	-1.69E-46
MS.gene05517	MS.gene21103	0.814001	1.92E-51	-1.69E-46
MS.gene055311	MS.gene21103	0.81853	1.87E-52	-1.69E-46
MS.gene055313	MS.gene21103	0.819909	9.07E-53	-1.69E-46
MS.gene055314	MS.gene21103	0.809371	1.96E-50	-1.69E-46
MS.gene055465	MS.gene21103	0.802086	6.63E-49	-1.69E-46
MS.gene055468	MS.gene21103	0.826563	2.53E-54	-1.69E-46
MS.gene055469	MS.gene21103	0.809319	2.01E-50	-1.69E-46
MS.gene055513	MS.gene21103	0.847426	1.17E-59	-1.69E-46
MS.gene056045	MS.gene21103	0.817908	2.58E-52	-1.69E-46
MS.gene056181	MS.gene21103	0.837081	6.41E-57	-1.69E-46
MS.gene056215	MS.gene21103	0.816027	6.83E-52	-1.69E-46
MS.gene056308	MS.gene21103	0.810664	1.03E-50	-1.69E-46
MS.gene056390	MS.gene21103	0.819158	1.35E-52	-1.69E-46
MS.gene056986	MS.gene21103	0.835085	2.06E-56	-1.69E-46
MS.gene057102	MS.gene21103	0.836843	7.38E-57	-1.69E-46
MS.gene05781	MS.gene21103	0.804099	2.54E-49	-1.69E-46
MS.gene057890	MS.gene21103	-0.844987	5.38E-59	-1.69E-46
MS.gene057893	MS.gene21103	-0.813523	2.45E-51	-1.69E-46
MS.gene058159	MS.gene21103	0.806645	7.44E-50	-1.69E-46
MS.gene058261	MS.gene21103	0.813175	2.92E-51	-1.69E-46
MS.gene058852	MS.gene21103	0.815012	1.15E-51	-1.69E-46
MS.gene059146	MS.gene21103	0.822716	2.04E-53	-1.69E-46
MS.gene059170	MS.gene21103	0.840356	9.13E-58	-1.69E-46
MS.gene059227	MS.gene21103	0.816929	4.29E-52	-1.69E-46
MS.gene05985	MS.gene21103	-0.812847	3.45E-51	-1.69E-46
MS.gene06011	MS.gene21103	0.833958	3.95E-56	-1.69E-46
MS.gene060365	MS.gene21103	0.808917	2.45E-50	-1.69E-46
MS.gene060763	MS.gene21103	0.820207	7.75E-53	-1.69E-46
MS.gene060932	MS.gene21103	0.805389	1.37E-49	-1.69E-46
MS.gene060935	MS.gene21103	0.800956	1.13E-48	-1.69E-46
MS.gene060937	MS.gene21103	0.813364	2.66E-51	-1.69E-46
MS.gene061100	MS.gene21103	0.855094	7.95E-62	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21103.t1	MTR_1g085355	98.540	137	2	0	1	137	1	137	3.13e-94	268
MS.gene21103.t1	MTR_4g118050	97.810	137	2	1	1	137	1	136	1.70e-91	261
MS.gene21103.t1	MTR_1g085440	94.161	137	7	1	1	137	1	136	7.95e-89	254

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21103.t1	AT5G03050	58.730	126	47	2	10	132	11	134	1.44e-42	137
MS.gene21103.t1	AT5G03050	58.730	126	47	2	10	132	11	134	1.44e-42	137

Find 0 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTAAACATTGAATGTTCAA+TGG	-	10908:17228-17247	None:intergenic	20.0%
!!!	ATGTTTGAAATGTTTAATTG+TGG	+	10908:17101-17120	MS.gene21103:intron	20.0%
!!!	TGTTAGTTTTTGACTTTTTA+TGG	+	10908:17268-17287	MS.gene21103:intron	20.0%
!	TTTAATTGTGGATTTCTTGT+AGG	+	10908:17113-17132	MS.gene21103:intron	25.0%
!!	CTTTTCTTTTCACAATAAAC+AGG	+	10908:16866-16885	MS.gene21103:intron	25.0%
!!!	CTTTTAACTTTCAAATAAGC+AGG	+	10908:17298-17317	MS.gene21103:intron	25.0%
	ACGACAAGAAAAATGTTGAA+AGG	-	10908:16806-16825	None:intergenic	30.0%
	ATCAGGGAAAACAATGTTTA+AGG	+	10908:17152-17171	MS.gene21103:CDS	30.0%
!	AGATTGAGAATTTTACTCAG+AGG	+	10908:17012-17031	MS.gene21103:CDS	30.0%
!	GATTGAGAATTTTACTCAGA+GGG	+	10908:17013-17032	MS.gene21103:CDS	30.0%
	TCAAATAAGCAGGATTCACA+AGG	+	10908:17308-17327	MS.gene21103:intron	35.0%
!	ACAAGGAACAGGTTGAAAAA+TGG	+	10908:17325-17344	MS.gene21103:CDS	35.0%
	AAGGAAACGTATGAAACCTG+GGG	+	10908:16765-16784	MS.gene21103:CDS	40.0%
	CAAGGAAACGTATGAAACCT+GGG	+	10908:16764-16783	MS.gene21103:CDS	40.0%
	GCGAAAATAACAATTACCCC+AGG	-	10908:16784-16803	None:intergenic	40.0%
	TATCTGAGCTCTTGGAATCA+GGG	+	10908:17136-17155	MS.gene21103:CDS	40.0%
	TCAAGGAAACGTATGAAACC+TGG	+	10908:16763-16782	MS.gene21103:CDS	40.0%
!	AGCATTAGCTTCCTCATTTG+AGG	-	10908:17385-17404	None:intergenic	40.0%
!	GGTTTGAGACTAACCAAGTT+GGG	+	10908:16949-16968	MS.gene21103:CDS	40.0%
	AAGCAGGATTCACAAGGAAC+AGG	+	10908:17314-17333	MS.gene21103:intron	45.0%
	ATCGCAGATTGTCCTTGTAC+AGG	+	10908:16920-16939	MS.gene21103:CDS	45.0%
	ATTGTCCTTGTACAGGAGGA+AGG	+	10908:16927-16946	MS.gene21103:CDS	45.0%
	CCATTTCTTCAGACCCAACT+TGG	-	10908:16965-16984	None:intergenic	45.0%
	CTTGTAGGTATCTGAGCTCT+TGG	+	10908:17128-17147	MS.gene21103:intron	45.0%
	GTATCTGAGCTCTTGGAATC+AGG	+	10908:17135-17154	MS.gene21103:CDS	45.0%
	GTCAGCTCAAAAAGGAAGCA+TGG	+	10908:16729-16748	MS.gene21103:CDS	45.0%
	TGCACTTGATGCCTCAAATG+AGG	+	10908:17371-17390	MS.gene21103:CDS	45.0%
	TTGTCCTTGTACAGGAGGAA+GGG	+	10908:16928-16947	MS.gene21103:CDS	45.0%
!	CAAAAAGGAAGCATGGACAG+TGG	+	10908:16736-16755	MS.gene21103:CDS	45.0%
!	CCAAGTTGGGTCTGAAGAAA+TGG	+	10908:16962-16981	MS.gene21103:CDS	45.0%
!	GGAACAGGTTGAAAAATGGC+AGG	+	10908:17329-17348	MS.gene21103:CDS	45.0%
!	GGGTTTGAGACTAACCAAGT+TGG	+	10908:16948-16967	MS.gene21103:CDS	45.0%
	CAAACCCTTCCTCCTGTACA+AGG	-	10908:16935-16954	None:intergenic	50.0%
	GCAGATTGTCCTTGTACAGG+AGG	+	10908:16923-16942	MS.gene21103:CDS	50.0%
	GCATGGACAGTGGAGCTTCA+AGG	+	10908:16746-16765	MS.gene21103:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
10908	gene	16727	17452	16727	ID=MS.gene21103
10908	mRNA	16727	17452	16727	ID=MS.gene21103.t1;Parent=MS.gene21103
10908	exon	16727	16786	16727	ID=MS.gene21103.t1.exon1;Parent=MS.gene21103.t1
10908	CDS	16727	16786	16727	ID=cds.MS.gene21103.t1;Parent=MS.gene21103.t1
10908	exon	16888	17034	16888	ID=MS.gene21103.t1.exon2;Parent=MS.gene21103.t1
10908	CDS	16888	17034	16888	ID=cds.MS.gene21103.t1;Parent=MS.gene21103.t1
10908	exon	17135	17208	17135	ID=MS.gene21103.t1.exon3;Parent=MS.gene21103.t1
10908	CDS	17135	17208	17135	ID=cds.MS.gene21103.t1;Parent=MS.gene21103.t1
10908	exon	17320	17452	17320	ID=MS.gene21103.t1.exon4;Parent=MS.gene21103.t1
10908	CDS	17320	17452	17320	ID=cds.MS.gene21103.t1;Parent=MS.gene21103.t1

Gene Sequence

>MS.gene21103

ATGTCAGCTCAAAAAGGAAGCATGGACAGTGGAGCTTCAAGGAAACGTATGAAACCTGGGGTAATTGTTATTTTCGCCTTTCAACATTTTTCTTGTCGTGAATTTACAGCATTTATAACATTCTTTGATGTTTCATTTGCTTTTCTTTTCACAATAAACAGGTAGTACAAGAAAAGATTAGAGATGAAGCAGAATCGCAGATTGTCCTTGTACAGGAGGAAGGGTTTGAGACTAACCAAGTTGGGTCTGAAGAAATGGAGCTCAATATTTCTCTTGTTCTTGAGAAGATTGAGAATTTTACTCAGAGGGTAGCTATAAAAAGTTACACTTACACACTGTTTGAAGCTTGAAATCATACTCTAGATGAATGTTAAATGTTTGAAATGTTTAATTGTGGATTTCTTGTAGGTATCTGAGCTCTTGGAATCAGGGAAAACAATGTTTAAGGAGCTATGCAATGAATTTGAAGAGAAACTGATTATGTGAGTTATGAAGTTACCATTGAACATTCAATGTTTAAACTATCTTTCACTTTAAATATTGTTAGTTTTTGACTTTTTATGGTGTGATTCTTTTAACTTTCAAATAAGCAGGATTCACAAGGAACAGGTTGAAAAATGGCAGGAAGAGATCAAAGAACTGCGTGCACTTGATGCCTCAAATGAGGAAGCTAATGCTCTTCTGCAAAATGCACGATATGTACTTCAGCTAACTCGTAATGATTAG

Protein sequence

>MS.gene21103.t1

MSAQKGSMDSGASRKRMKPGVVQEKIRDEAESQIVLVQEEGFETNQVGSEEMELNISLVLEKIENFTQRVSELLESGKTMFKELCNEFEEKLIMIHKEQVEKWQEEIKELRALDASNEEANALLQNARYVLQLTRND