AlfalfaGEDB | MS.gene21105

M. sativa cultivar XinJiangDaYe / MS.gene21105

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21105.t1	XP_013469106.1	98.5	137	2	0	1	137	1	137	1.40E-62	248.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21105.t1	A0A072VMA2	98.5	137	2	0	1	137	1	137	1.0e-62	248.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene21105	0.815805	7.66E-52	-1.69E-46
MS.gene04918	MS.gene21105	0.818485	1.91E-52	-1.69E-46
MS.gene04920	MS.gene21105	0.810761	9.82E-51	-1.69E-46
MS.gene049283	MS.gene21105	0.808735	2.68E-50	-1.69E-46
MS.gene049350	MS.gene21105	0.822285	2.57E-53	-1.69E-46
MS.gene049368	MS.gene21105	0.829807	4.19E-55	-1.69E-46
MS.gene049821	MS.gene21105	0.820422	6.92E-53	-1.69E-46
MS.gene049983	MS.gene21105	0.808868	2.51E-50	-1.69E-46
MS.gene050253	MS.gene21105	0.804073	2.57E-49	-1.69E-46
MS.gene050300	MS.gene21105	-0.80743	5.07E-50	-1.69E-46
MS.gene050654	MS.gene21105	0.814324	1.63E-51	-1.69E-46
MS.gene050752	MS.gene21105	0.800126	1.67E-48	-1.69E-46
MS.gene050838	MS.gene21105	0.849967	2.30E-60	-1.69E-46
MS.gene051003	MS.gene21105	0.848049	7.85E-60	-1.69E-46
MS.gene051233	MS.gene21105	0.813956	1.97E-51	-1.69E-46
MS.gene051234	MS.gene21105	0.822707	2.05E-53	-1.69E-46
MS.gene051343	MS.gene21105	0.825458	4.64E-54	-1.69E-46
MS.gene051676	MS.gene21105	0.823869	1.10E-53	-1.69E-46
MS.gene051700	MS.gene21105	0.819602	1.07E-52	-1.69E-46
MS.gene051856	MS.gene21105	0.800319	1.52E-48	-1.69E-46
MS.gene05188	MS.gene21105	0.823094	1.67E-53	-1.69E-46
MS.gene051902	MS.gene21105	0.86109	1.31E-63	-1.69E-46
MS.gene051975	MS.gene21105	0.835901	1.28E-56	-1.69E-46
MS.gene052016	MS.gene21105	0.808948	2.41E-50	-1.69E-46
MS.gene052072	MS.gene21105	0.809023	2.32E-50	-1.69E-46
MS.gene052296	MS.gene21105	0.816509	5.33E-52	-1.69E-46
MS.gene052335	MS.gene21105	0.805546	1.27E-49	-1.69E-46
MS.gene052342	MS.gene21105	0.848853	4.70E-60	-1.69E-46
MS.gene052434	MS.gene21105	0.812372	4.38E-51	-1.69E-46
MS.gene052463	MS.gene21105	0.836273	1.03E-56	-1.69E-46
MS.gene052947	MS.gene21105	0.815938	7.15E-52	-1.69E-46
MS.gene053058	MS.gene21105	0.80955	1.79E-50	-1.69E-46
MS.gene053298	MS.gene21105	0.826133	3.21E-54	-1.69E-46
MS.gene053564	MS.gene21105	0.810125	1.35E-50	-1.69E-46
MS.gene053581	MS.gene21105	0.817633	2.98E-52	-1.69E-46
MS.gene053677	MS.gene21105	0.800012	1.76E-48	-1.69E-46
MS.gene053786	MS.gene21105	0.864392	1.26E-64	-1.69E-46
MS.gene054139	MS.gene21105	0.801495	8.77E-49	-1.69E-46
MS.gene054403	MS.gene21105	0.802817	4.69E-49	-1.69E-46
MS.gene05458	MS.gene21105	0.813214	2.87E-51	-1.69E-46
MS.gene05517	MS.gene21105	0.813548	2.42E-51	-1.69E-46
MS.gene055311	MS.gene21105	0.818214	2.20E-52	-1.69E-46
MS.gene055313	MS.gene21105	0.819543	1.10E-52	-1.69E-46
MS.gene055314	MS.gene21105	0.808966	2.39E-50	-1.69E-46
MS.gene055465	MS.gene21105	0.80173	7.84E-49	-1.69E-46
MS.gene055468	MS.gene21105	0.826393	2.78E-54	-1.69E-46
MS.gene055469	MS.gene21105	0.808951	2.41E-50	-1.69E-46
MS.gene055513	MS.gene21105	0.846948	1.58E-59	-1.69E-46
MS.gene056045	MS.gene21105	0.817596	3.04E-52	-1.69E-46
MS.gene056181	MS.gene21105	0.836611	8.45E-57	-1.69E-46
MS.gene056215	MS.gene21105	0.815914	7.24E-52	-1.69E-46
MS.gene056308	MS.gene21105	0.810151	1.33E-50	-1.69E-46
MS.gene056390	MS.gene21105	0.818678	1.73E-52	-1.69E-46
MS.gene056986	MS.gene21105	0.834974	2.20E-56	-1.69E-46
MS.gene057102	MS.gene21105	0.837063	6.48E-57	-1.69E-46
MS.gene05781	MS.gene21105	0.804479	2.12E-49	-1.69E-46
MS.gene057890	MS.gene21105	-0.844564	6.99E-59	-1.69E-46
MS.gene057893	MS.gene21105	-0.81311	3.02E-51	-1.69E-46
MS.gene058159	MS.gene21105	0.807045	6.12E-50	-1.69E-46
MS.gene058261	MS.gene21105	0.813601	2.36E-51	-1.69E-46
MS.gene058852	MS.gene21105	0.815121	1.09E-51	-1.69E-46
MS.gene059146	MS.gene21105	0.822298	2.55E-53	-1.69E-46
MS.gene059170	MS.gene21105	0.839547	1.48E-57	-1.69E-46
MS.gene059227	MS.gene21105	0.816749	4.71E-52	-1.69E-46
MS.gene05985	MS.gene21105	-0.812802	3.53E-51	-1.69E-46
MS.gene06011	MS.gene21105	0.834093	3.66E-56	-1.69E-46
MS.gene060365	MS.gene21105	0.808696	2.73E-50	-1.69E-46
MS.gene060763	MS.gene21105	0.820425	6.91E-53	-1.69E-46
MS.gene060932	MS.gene21105	0.804955	1.68E-49	-1.69E-46
MS.gene060935	MS.gene21105	0.800448	1.43E-48	-1.69E-46
MS.gene060937	MS.gene21105	0.812934	3.30E-51	-1.69E-46
MS.gene061100	MS.gene21105	0.854812	9.59E-62	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21105.t1	MTR_1g085355	98.540	137	2	0	1	137	1	137	3.13e-94	268
MS.gene21105.t1	MTR_4g118050	97.810	137	2	1	1	137	1	136	1.70e-91	261
MS.gene21105.t1	MTR_1g085440	94.161	137	7	1	1	137	1	136	7.95e-89	254

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21105.t1	AT5G03050	58.730	126	47	2	10	132	11	134	1.44e-42	137
MS.gene21105.t1	AT5G03050	58.730	126	47	2	10	132	11	134	1.44e-42	137

Find 0 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTAAACATTGAATGTTCAA+TGG	-	10909:10830-10849	None:intergenic	20.0%
!!!	ATGTTTGAAATGTTTAATTG+TGG	+	10909:10703-10722	MS.gene21105:intron	20.0%
!!!	TGTTAGTTTTTGACTTTTTA+TGG	+	10909:10870-10889	MS.gene21105:intron	20.0%
!	TTTAATTGTGGATTTCTTGT+AGG	+	10909:10715-10734	MS.gene21105:intron	25.0%
!!	CTTTTCTTTTCACAATAAAC+AGG	+	10909:10468-10487	MS.gene21105:intron	25.0%
!!!	CTTTTAACTTTCAAATAAGC+AGG	+	10909:10900-10919	MS.gene21105:intron	25.0%
	ACGACAAGAAAAATGTTGAA+AGG	-	10909:10408-10427	None:intergenic	30.0%
	ATCAGGGAAAACAATGTTTA+AGG	+	10909:10754-10773	MS.gene21105:CDS	30.0%
!	AGATTGAGAATTTTACTCAG+AGG	+	10909:10614-10633	MS.gene21105:CDS	30.0%
!	GATTGAGAATTTTACTCAGA+GGG	+	10909:10615-10634	MS.gene21105:CDS	30.0%
	TCAAATAAGCAGGATTCACA+AGG	+	10909:10910-10929	MS.gene21105:intron	35.0%
!	ACAAGGAACAGGTTGAAAAA+TGG	+	10909:10927-10946	MS.gene21105:CDS	35.0%
	AAGGAAACGTATGAAACCTG+GGG	+	10909:10367-10386	MS.gene21105:CDS	40.0%
	CAAGGAAACGTATGAAACCT+GGG	+	10909:10366-10385	MS.gene21105:CDS	40.0%
	GCGAAAATAACAATTACCCC+AGG	-	10909:10386-10405	None:intergenic	40.0%
	TATCTGAGCTCTTGGAATCA+GGG	+	10909:10738-10757	MS.gene21105:CDS	40.0%
	TCAAGGAAACGTATGAAACC+TGG	+	10909:10365-10384	MS.gene21105:CDS	40.0%
!	AGCATTAGCTTCCTCATTTG+AGG	-	10909:10987-11006	None:intergenic	40.0%
!	GGTTTGAGACTAACCAAGTT+GGG	+	10909:10551-10570	MS.gene21105:CDS	40.0%
	AAGCAGGATTCACAAGGAAC+AGG	+	10909:10916-10935	MS.gene21105:intron	45.0%
	ATCGCAGATTGTCCTTGTAC+AGG	+	10909:10522-10541	MS.gene21105:CDS	45.0%
	ATTGTCCTTGTACAGGAGGA+AGG	+	10909:10529-10548	MS.gene21105:CDS	45.0%
	CCATTTCTTCAGACCCAACT+TGG	-	10909:10567-10586	None:intergenic	45.0%
	CTTGTAGGTATCTGAGCTCT+TGG	+	10909:10730-10749	MS.gene21105:intron	45.0%
	GTATCTGAGCTCTTGGAATC+AGG	+	10909:10737-10756	MS.gene21105:CDS	45.0%
	GTCAGCTCAAAAAGGAAGCA+TGG	+	10909:10331-10350	MS.gene21105:CDS	45.0%
	TGCACTTGATGCCTCAAATG+AGG	+	10909:10973-10992	MS.gene21105:CDS	45.0%
	TTGTCCTTGTACAGGAGGAA+GGG	+	10909:10530-10549	MS.gene21105:CDS	45.0%
!	CAAAAAGGAAGCATGGACAG+TGG	+	10909:10338-10357	MS.gene21105:CDS	45.0%
!	CCAAGTTGGGTCTGAAGAAA+TGG	+	10909:10564-10583	MS.gene21105:CDS	45.0%
!	GGAACAGGTTGAAAAATGGC+AGG	+	10909:10931-10950	MS.gene21105:CDS	45.0%
!	GGGTTTGAGACTAACCAAGT+TGG	+	10909:10550-10569	MS.gene21105:CDS	45.0%
	CAAACCCTTCCTCCTGTACA+AGG	-	10909:10537-10556	None:intergenic	50.0%
	GCAGATTGTCCTTGTACAGG+AGG	+	10909:10525-10544	MS.gene21105:CDS	50.0%
	GCATGGACAGTGGAGCTTCA+AGG	+	10909:10348-10367	MS.gene21105:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
10909	gene	10329	11054	10329	ID=MS.gene21105
10909	mRNA	10329	11054	10329	ID=MS.gene21105.t1;Parent=MS.gene21105
10909	exon	10329	10388	10329	ID=MS.gene21105.t1.exon1;Parent=MS.gene21105.t1
10909	CDS	10329	10388	10329	ID=cds.MS.gene21105.t1;Parent=MS.gene21105.t1
10909	exon	10490	10636	10490	ID=MS.gene21105.t1.exon2;Parent=MS.gene21105.t1
10909	CDS	10490	10636	10490	ID=cds.MS.gene21105.t1;Parent=MS.gene21105.t1
10909	exon	10737	10810	10737	ID=MS.gene21105.t1.exon3;Parent=MS.gene21105.t1
10909	CDS	10737	10810	10737	ID=cds.MS.gene21105.t1;Parent=MS.gene21105.t1
10909	exon	10922	11054	10922	ID=MS.gene21105.t1.exon4;Parent=MS.gene21105.t1
10909	CDS	10922	11054	10922	ID=cds.MS.gene21105.t1;Parent=MS.gene21105.t1

Gene Sequence

>MS.gene21105

ATGTCAGCTCAAAAAGGAAGCATGGACAGTGGAGCTTCAAGGAAACGTATGAAACCTGGGGTAATTGTTATTTTCGCCTTTCAACATTTTTCTTGTCGTGAATTTACAGCATTTATAACATTCTTTGATGTTTCATTTGCTTTTCTTTTCACAATAAACAGGTAGTACAAGAAAAGATTAGAGATGAAGCAGAATCGCAGATTGTCCTTGTACAGGAGGAAGGGTTTGAGACTAACCAAGTTGGGTCTGAAGAAATGGAGCTCAATATTTCTCTTGTTCTTGAGAAGATTGAGAATTTTACTCAGAGGGTAGCTATAAAAAGTTACACTTACACACTGTTTGAAGCTTGAAATCATACTCTAGATGAATGTTAAATGTTTGAAATGTTTAATTGTGGATTTCTTGTAGGTATCTGAGCTCTTGGAATCAGGGAAAACAATGTTTAAGGAGCTATGCAATGAATTTGAAGAGAAACTGATTATGTGAGTTATGAAGTTACCATTGAACATTCAATGTTTAAACTATCTTTCACTTTAAATATTGTTAGTTTTTGACTTTTTATGGTGTGATTCTTTTAACTTTCAAATAAGCAGGATTCACAAGGAACAGGTTGAAAAATGGCAGGAAGAGATCAAAGAACTGCGTGCACTTGATGCCTCAAATGAGGAAGCTAATGCTCTTCTGCAAAATGCACGATATGTACTTCAGCTAACTCGTAATGATTAG

Protein sequence

>MS.gene21105.t1

MSAQKGSMDSGASRKRMKPGVVQEKIRDEAESQIVLVQEEGFETNQVGSEEMELNISLVLEKIENFTQRVSELLESGKTMFKELCNEFEEKLIMIHKEQVEKWQEEIKELRALDASNEEANALLQNARYVLQLTRND