AlfalfaGEDB | MS.gene21107

M. sativa cultivar XinJiangDaYe / MS.gene21107

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21107.t1	XP_013469106.1	98.5	137	2	0	1	137	1	137	1.40E-62	248.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21107.t1	A0A072VMA2	98.5	137	2	0	1	137	1	137	1.0e-62	248.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene21107	0.818034	2.42E-52	-1.69E-46
MS.gene04918	MS.gene21107	0.82036	7.15E-53	-1.69E-46
MS.gene04920	MS.gene21107	0.812555	4.00E-51	-1.69E-46
MS.gene049283	MS.gene21107	0.809354	1.97E-50	-1.69E-46
MS.gene049350	MS.gene21107	0.823823	1.13E-53	-1.69E-46
MS.gene049368	MS.gene21107	0.831797	1.36E-55	-1.69E-46
MS.gene049499	MS.gene21107	0.801311	9.56E-49	-1.69E-46
MS.gene049821	MS.gene21107	0.823221	1.56E-53	-1.69E-46
MS.gene049983	MS.gene21107	0.810548	1.09E-50	-1.69E-46
MS.gene050253	MS.gene21107	0.804238	2.38E-49	-1.69E-46
MS.gene050300	MS.gene21107	-0.807967	3.90E-50	-1.69E-46
MS.gene050654	MS.gene21107	0.816166	6.36E-52	-1.69E-46
MS.gene050752	MS.gene21107	0.801206	1.00E-48	-1.69E-46
MS.gene050838	MS.gene21107	0.850393	1.75E-60	-1.69E-46
MS.gene051003	MS.gene21107	0.849437	3.24E-60	-1.69E-46
MS.gene051233	MS.gene21107	0.814883	1.23E-51	-1.69E-46
MS.gene051234	MS.gene21107	0.823793	1.14E-53	-1.69E-46
MS.gene051343	MS.gene21107	0.826563	2.53E-54	-1.69E-46
MS.gene051676	MS.gene21107	0.824566	7.53E-54	-1.69E-46
MS.gene051700	MS.gene21107	0.819938	8.93E-53	-1.69E-46
MS.gene051856	MS.gene21107	0.800831	1.20E-48	-1.69E-46
MS.gene05188	MS.gene21107	0.824426	8.13E-54	-1.69E-46
MS.gene051902	MS.gene21107	0.861436	1.03E-63	-1.69E-46
MS.gene051975	MS.gene21107	0.836961	6.89E-57	-1.69E-46
MS.gene052016	MS.gene21107	0.810275	1.25E-50	-1.69E-46
MS.gene052072	MS.gene21107	0.809604	1.74E-50	-1.69E-46
MS.gene052296	MS.gene21107	0.816006	6.91E-52	-1.69E-46
MS.gene052335	MS.gene21107	0.807179	5.74E-50	-1.69E-46
MS.gene052342	MS.gene21107	0.849632	2.86E-60	-1.69E-46
MS.gene052434	MS.gene21107	0.813979	1.95E-51	-1.69E-46
MS.gene052463	MS.gene21107	0.83767	4.53E-57	-1.69E-46
MS.gene052947	MS.gene21107	0.817627	2.99E-52	-1.69E-46
MS.gene053058	MS.gene21107	0.810306	1.23E-50	-1.69E-46
MS.gene053298	MS.gene21107	0.82535	4.92E-54	-1.69E-46
MS.gene053564	MS.gene21107	0.810574	1.08E-50	-1.69E-46
MS.gene053581	MS.gene21107	0.81976	9.81E-53	-1.69E-46
MS.gene053677	MS.gene21107	0.800676	1.29E-48	-1.69E-46
MS.gene053786	MS.gene21107	0.863865	1.83E-64	-1.69E-46
MS.gene054139	MS.gene21107	0.801061	1.08E-48	-1.69E-46
MS.gene054403	MS.gene21107	0.803709	3.06E-49	-1.69E-46
MS.gene05458	MS.gene21107	0.814374	1.59E-51	-1.69E-46
MS.gene05517	MS.gene21107	0.816202	6.24E-52	-1.69E-46
MS.gene055311	MS.gene21107	0.81949	1.13E-52	-1.69E-46
MS.gene055313	MS.gene21107	0.820318	7.31E-53	-1.69E-46
MS.gene055314	MS.gene21107	0.809578	1.77E-50	-1.69E-46
MS.gene055465	MS.gene21107	0.804272	2.34E-49	-1.69E-46
MS.gene055468	MS.gene21107	0.82901	6.54E-55	-1.69E-46
MS.gene055469	MS.gene21107	0.810828	9.49E-51	-1.69E-46
MS.gene055513	MS.gene21107	0.848773	4.95E-60	-1.69E-46
MS.gene056045	MS.gene21107	0.81843	1.97E-52	-1.69E-46
MS.gene056181	MS.gene21107	0.83782	4.15E-57	-1.69E-46
MS.gene056215	MS.gene21107	0.818166	2.26E-52	-1.69E-46
MS.gene056308	MS.gene21107	0.812796	3.54E-51	-1.69E-46
MS.gene056390	MS.gene21107	0.820936	5.27E-53	-1.69E-46
MS.gene056986	MS.gene21107	0.83396	3.95E-56	-1.69E-46
MS.gene057102	MS.gene21107	0.836096	1.14E-56	-1.69E-46
MS.gene05781	MS.gene21107	0.804708	1.90E-49	-1.69E-46
MS.gene057890	MS.gene21107	-0.845146	4.87E-59	-1.69E-46
MS.gene057893	MS.gene21107	-0.813331	2.70E-51	-1.69E-46
MS.gene058159	MS.gene21107	0.806472	8.09E-50	-1.69E-46
MS.gene058261	MS.gene21107	0.813736	2.20E-51	-1.69E-46
MS.gene058852	MS.gene21107	0.815715	8.02E-52	-1.69E-46
MS.gene059146	MS.gene21107	0.823903	1.08E-53	-1.69E-46
MS.gene059170	MS.gene21107	0.841444	4.73E-58	-1.69E-46
MS.gene059227	MS.gene21107	0.817734	2.83E-52	-1.69E-46
MS.gene05985	MS.gene21107	-0.812989	3.21E-51	-1.69E-46
MS.gene06011	MS.gene21107	0.834646	2.66E-56	-1.69E-46
MS.gene060365	MS.gene21107	0.810056	1.39E-50	-1.69E-46
MS.gene060763	MS.gene21107	0.820458	6.79E-53	-1.69E-46
MS.gene060932	MS.gene21107	0.806763	7.02E-50	-1.69E-46
MS.gene060935	MS.gene21107	0.800835	1.20E-48	-1.69E-46
MS.gene060937	MS.gene21107	0.813041	3.13E-51	-1.69E-46
MS.gene061100	MS.gene21107	0.856846	2.44E-62	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21107.t1	MTR_1g085355	98.540	137	2	0	1	137	1	137	3.13e-94	268
MS.gene21107.t1	MTR_4g118050	97.810	137	2	1	1	137	1	136	1.70e-91	261
MS.gene21107.t1	MTR_1g085440	94.161	137	7	1	1	137	1	136	7.95e-89	254

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21107.t1	AT5G03050	58.730	126	47	2	10	132	11	134	1.44e-42	137
MS.gene21107.t1	AT5G03050	58.730	126	47	2	10	132	11	134	1.44e-42	137

Find 0 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTTAAACATTGAATGTTCAA+TGG	-	10911:6243-6262	None:intergenic	20.0%
!!!	ATGTTTGAAATGTTTAATTG+TGG	+	10911:6116-6135	MS.gene21107:intron	20.0%
!!!	TGTTAGTTTTTGACTTTTTA+TGG	+	10911:6283-6302	MS.gene21107:intron	20.0%
!	TTTAATTGTGGATTTCTTGT+AGG	+	10911:6128-6147	MS.gene21107:intron	25.0%
!!	CTTTTCTTTTCACAATAAAC+AGG	+	10911:5881-5900	MS.gene21107:intron	25.0%
!!!	CTTTTAACTTTCAAATAAGC+AGG	+	10911:6313-6332	MS.gene21107:intron	25.0%
	ACGACAAGAAAAATGTTGAA+AGG	-	10911:5821-5840	None:intergenic	30.0%
	ATCAGGGAAAACAATGTTTA+AGG	+	10911:6167-6186	MS.gene21107:CDS	30.0%
!	AGATTGAGAATTTTACTCAG+AGG	+	10911:6027-6046	MS.gene21107:CDS	30.0%
!	GATTGAGAATTTTACTCAGA+GGG	+	10911:6028-6047	MS.gene21107:CDS	30.0%
	TCAAATAAGCAGGATTCACA+AGG	+	10911:6323-6342	MS.gene21107:intron	35.0%
!	ACAAGGAACAGGTTGAAAAA+TGG	+	10911:6340-6359	MS.gene21107:CDS	35.0%
	AAGGAAACGTATGAAACCTG+GGG	+	10911:5780-5799	MS.gene21107:CDS	40.0%
	CAAGGAAACGTATGAAACCT+GGG	+	10911:5779-5798	MS.gene21107:CDS	40.0%
	GCGAAAATAACAATTACCCC+AGG	-	10911:5799-5818	None:intergenic	40.0%
	TATCTGAGCTCTTGGAATCA+GGG	+	10911:6151-6170	MS.gene21107:CDS	40.0%
	TCAAGGAAACGTATGAAACC+TGG	+	10911:5778-5797	MS.gene21107:CDS	40.0%
!	AGCATTAGCTTCCTCATTTG+AGG	-	10911:6400-6419	None:intergenic	40.0%
!	GGTTTGAGACTAACCAAGTT+GGG	+	10911:5964-5983	MS.gene21107:CDS	40.0%
	AAGCAGGATTCACAAGGAAC+AGG	+	10911:6329-6348	MS.gene21107:intron	45.0%
	ATCGCAGATTGTCCTTGTAC+AGG	+	10911:5935-5954	MS.gene21107:CDS	45.0%
	ATTGTCCTTGTACAGGAGGA+AGG	+	10911:5942-5961	MS.gene21107:CDS	45.0%
	CCATTTCTTCAGACCCAACT+TGG	-	10911:5980-5999	None:intergenic	45.0%
	CTTGTAGGTATCTGAGCTCT+TGG	+	10911:6143-6162	MS.gene21107:intron	45.0%
	GTATCTGAGCTCTTGGAATC+AGG	+	10911:6150-6169	MS.gene21107:CDS	45.0%
	GTCAGCTCAAAAAGGAAGCA+TGG	+	10911:5744-5763	MS.gene21107:CDS	45.0%
	TGCACTTGATGCCTCAAATG+AGG	+	10911:6386-6405	MS.gene21107:CDS	45.0%
	TTGTCCTTGTACAGGAGGAA+GGG	+	10911:5943-5962	MS.gene21107:CDS	45.0%
!	CAAAAAGGAAGCATGGACAG+TGG	+	10911:5751-5770	MS.gene21107:CDS	45.0%
!	CCAAGTTGGGTCTGAAGAAA+TGG	+	10911:5977-5996	MS.gene21107:CDS	45.0%
!	GGAACAGGTTGAAAAATGGC+AGG	+	10911:6344-6363	MS.gene21107:CDS	45.0%
!	GGGTTTGAGACTAACCAAGT+TGG	+	10911:5963-5982	MS.gene21107:CDS	45.0%
	CAAACCCTTCCTCCTGTACA+AGG	-	10911:5950-5969	None:intergenic	50.0%
	GCAGATTGTCCTTGTACAGG+AGG	+	10911:5938-5957	MS.gene21107:CDS	50.0%
	GCATGGACAGTGGAGCTTCA+AGG	+	10911:5761-5780	MS.gene21107:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
10911	gene	5742	6467	5742	ID=MS.gene21107
10911	mRNA	5742	6467	5742	ID=MS.gene21107.t1;Parent=MS.gene21107
10911	exon	5742	5801	5742	ID=MS.gene21107.t1.exon1;Parent=MS.gene21107.t1
10911	CDS	5742	5801	5742	ID=cds.MS.gene21107.t1;Parent=MS.gene21107.t1
10911	exon	5903	6049	5903	ID=MS.gene21107.t1.exon2;Parent=MS.gene21107.t1
10911	CDS	5903	6049	5903	ID=cds.MS.gene21107.t1;Parent=MS.gene21107.t1
10911	exon	6150	6223	6150	ID=MS.gene21107.t1.exon3;Parent=MS.gene21107.t1
10911	CDS	6150	6223	6150	ID=cds.MS.gene21107.t1;Parent=MS.gene21107.t1
10911	exon	6335	6467	6335	ID=MS.gene21107.t1.exon4;Parent=MS.gene21107.t1
10911	CDS	6335	6467	6335	ID=cds.MS.gene21107.t1;Parent=MS.gene21107.t1

Gene Sequence

>MS.gene21107

ATGTCAGCTCAAAAAGGAAGCATGGACAGTGGAGCTTCAAGGAAACGTATGAAACCTGGGGTAATTGTTATTTTCGCCTTTCAACATTTTTCTTGTCGTGAATTTACAGCATTTATAACATTCTTTGATGTTTCATTTGCTTTTCTTTTCACAATAAACAGGTAGTACAAGAAAAGATTAGAGATGAAGCAGAATCGCAGATTGTCCTTGTACAGGAGGAAGGGTTTGAGACTAACCAAGTTGGGTCTGAAGAAATGGAGCTCAATATTTCTCTTGTTCTTGAGAAGATTGAGAATTTTACTCAGAGGGTAGCTATAAAAAGTTACACTTACACACTGTTTGAAGCTTGAAATCATACTCTAGATGAATGTTAAATGTTTGAAATGTTTAATTGTGGATTTCTTGTAGGTATCTGAGCTCTTGGAATCAGGGAAAACAATGTTTAAGGAGCTATGCAATGAATTTGAAGAGAAACTGATTATGTGAGTTATGAAGTTACCATTGAACATTCAATGTTTAAACTATCTTTCACTTTAAATATTGTTAGTTTTTGACTTTTTATGGTGTGATTCTTTTAACTTTCAAATAAGCAGGATTCACAAGGAACAGGTTGAAAAATGGCAGGAAGAGATCAAAGAACTGCGTGCACTTGATGCCTCAAATGAGGAAGCTAATGCTCTTCTGCAAAATGCACGATATGTACTTCAGCTAACTCGTAATGATTAG

Protein sequence

>MS.gene21107.t1

MSAQKGSMDSGASRKRMKPGVVQEKIRDEAESQIVLVQEEGFETNQVGSEEMELNISLVLEKIENFTQRVSELLESGKTMFKELCNEFEEKLIMIHKEQVEKWQEEIKELRALDASNEEANALLQNARYVLQLTRND