Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25829.t1 | XP_003601356.1 | 92.2 | 128 | 9 | 1 | 45 | 171 | 1 | 128 | 3.90E-57 | 231.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25829.t1 | G7J6M5 | 92.2 | 128 | 9 | 1 | 45 | 171 | 1 | 128 | 2.8e-57 | 231.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene25829 | 0.836257 | 1.04E-56 | -1.69E-46 |
| MS.gene049351 | MS.gene25829 | 0.819088 | 1.40E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene25829 | 0.831723 | 1.42E-55 | -1.69E-46 |
| MS.gene049491 | MS.gene25829 | 0.814177 | 1.76E-51 | -1.69E-46 |
| MS.gene049661 | MS.gene25829 | 0.838105 | 3.50E-57 | -1.69E-46 |
| MS.gene049662 | MS.gene25829 | 0.830331 | 3.12E-55 | -1.69E-46 |
| MS.gene049758 | MS.gene25829 | 0.809713 | 1.65E-50 | -1.69E-46 |
| MS.gene049910 | MS.gene25829 | 0.818193 | 2.23E-52 | -1.69E-46 |
| MS.gene050076 | MS.gene25829 | 0.843986 | 1.00E-58 | -1.69E-46 |
| MS.gene050301 | MS.gene25829 | 0.851173 | 1.05E-60 | -1.69E-46 |
| MS.gene050397 | MS.gene25829 | 0.851825 | 6.89E-61 | -1.69E-46 |
| MS.gene050406 | MS.gene25829 | 0.810886 | 9.22E-51 | -1.69E-46 |
| MS.gene050432 | MS.gene25829 | 0.837438 | 5.20E-57 | -1.69E-46 |
| MS.gene050464 | MS.gene25829 | 0.830785 | 2.41E-55 | -1.69E-46 |
| MS.gene050529 | MS.gene25829 | 0.823372 | 1.44E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene25829 | 0.809262 | 2.06E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene25829 | 0.865417 | 6.00E-65 | -1.69E-46 |
| MS.gene051471 | MS.gene25829 | 0.837107 | 6.32E-57 | -1.69E-46 |
| MS.gene051582 | MS.gene25829 | 0.841854 | 3.69E-58 | -1.69E-46 |
| MS.gene051860 | MS.gene25829 | 0.805435 | 1.34E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene25829 | -0.800684 | 1.28E-48 | -1.69E-46 |
| MS.gene052078 | MS.gene25829 | 0.825717 | 4.03E-54 | -1.69E-46 |
| MS.gene052178 | MS.gene25829 | 0.820508 | 6.61E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene25829 | 0.808403 | 3.15E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene25829 | 0.839794 | 1.28E-57 | -1.69E-46 |
| MS.gene052310 | MS.gene25829 | 0.867579 | 1.23E-65 | -1.69E-46 |
| MS.gene052326 | MS.gene25829 | 0.809896 | 1.51E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene25829 | 0.838345 | 3.04E-57 | -1.69E-46 |
| MS.gene052421 | MS.gene25829 | 0.810233 | 1.28E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene25829 | 0.817305 | 3.53E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene25829 | 0.829551 | 4.83E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene25829 | 0.810145 | 1.33E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene25829 | 0.821148 | 4.71E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene25829 | 0.845097 | 5.02E-59 | -1.69E-46 |
| MS.gene054376 | MS.gene25829 | 0.810296 | 1.24E-50 | -1.69E-46 |
| MS.gene05455 | MS.gene25829 | 0.813176 | 2.92E-51 | -1.69E-46 |
| MS.gene054802 | MS.gene25829 | 0.81719 | 3.75E-52 | -1.69E-46 |
| MS.gene054803 | MS.gene25829 | 0.812917 | 3.33E-51 | -1.69E-46 |
| MS.gene054804 | MS.gene25829 | 0.814779 | 1.29E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene25829 | 0.832788 | 7.74E-56 | -1.69E-46 |
| MS.gene055277 | MS.gene25829 | 0.882091 | 1.39E-70 | -1.69E-46 |
| MS.gene055390 | MS.gene25829 | 0.821484 | 3.94E-53 | -1.69E-46 |
| MS.gene055412 | MS.gene25829 | 0.805617 | 1.22E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene25829 | 0.831765 | 1.39E-55 | -1.69E-46 |
| MS.gene055428 | MS.gene25829 | 0.851756 | 7.21E-61 | -1.69E-46 |
| MS.gene05553 | MS.gene25829 | 0.805808 | 1.12E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene25829 | 0.842849 | 2.01E-58 | -1.69E-46 |
| MS.gene056407 | MS.gene25829 | 0.831654 | 1.48E-55 | -1.69E-46 |
| MS.gene056451 | MS.gene25829 | 0.80864 | 2.80E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene25829 | 0.830499 | 2.84E-55 | -1.69E-46 |
| MS.gene056899 | MS.gene25829 | -0.803026 | 4.24E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene25829 | 0.825019 | 5.89E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene25829 | 0.869244 | 3.58E-66 | -1.69E-46 |
| MS.gene057121 | MS.gene25829 | 0.805599 | 1.24E-49 | -1.69E-46 |
| MS.gene057123 | MS.gene25829 | 0.818276 | 2.13E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene25829 | 0.803746 | 3.01E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene25829 | 0.818143 | 2.29E-52 | -1.69E-46 |
| MS.gene05733 | MS.gene25829 | 0.806066 | 9.85E-50 | -1.69E-46 |
| MS.gene057449 | MS.gene25829 | 0.800243 | 1.58E-48 | -1.69E-46 |
| MS.gene057450 | MS.gene25829 | 0.810135 | 1.34E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene25829 | 0.809893 | 1.51E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene25829 | 0.834436 | 3.00E-56 | -1.69E-46 |
| MS.gene05811 | MS.gene25829 | 0.834596 | 2.74E-56 | -1.69E-46 |
| MS.gene058233 | MS.gene25829 | 0.839356 | 1.66E-57 | -1.69E-46 |
| MS.gene058293 | MS.gene25829 | 0.817736 | 2.83E-52 | -1.69E-46 |
| MS.gene05842 | MS.gene25829 | 0.826007 | 3.44E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene25829 | 0.853455 | 2.36E-61 | -1.69E-46 |
| MS.gene05886 | MS.gene25829 | 0.814292 | 1.66E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene25829 | 0.834847 | 2.36E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene25829 | 0.855998 | 4.33E-62 | -1.69E-46 |
| MS.gene059141 | MS.gene25829 | 0.815442 | 9.22E-52 | -1.69E-46 |
| MS.gene059294 | MS.gene25829 | 0.800462 | 1.43E-48 | -1.69E-46 |
| MS.gene059326 | MS.gene25829 | 0.806526 | 7.88E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene25829 | 0.819026 | 1.44E-52 | -1.69E-46 |
| MS.gene059518 | MS.gene25829 | 0.819261 | 1.27E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene25829 | 0.805239 | 1.47E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene25829 | 0.835916 | 1.27E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene25829 | 0.830446 | 2.92E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene25829 | 0.849322 | 3.48E-60 | -1.69E-46 |
| MS.gene059692 | MS.gene25829 | 0.849673 | 2.78E-60 | -1.69E-46 |
| MS.gene059695 | MS.gene25829 | 0.845926 | 2.99E-59 | -1.69E-46 |
| MS.gene05984 | MS.gene25829 | 0.814966 | 1.18E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene25829 | 0.862753 | 4.05E-64 | -1.69E-46 |
| MS.gene06037 | MS.gene25829 | 0.817837 | 2.68E-52 | -1.69E-46 |
| MS.gene060403 | MS.gene25829 | 0.820519 | 6.57E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene25829 | 0.87331 | 1.62E-67 | -1.69E-46 |
| MS.gene061051 | MS.gene25829 | -0.823208 | 1.57E-53 | -1.69E-46 |
| MS.gene061159 | MS.gene25829 | 0.826324 | 2.89E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25829.t1 | MTR_3g079820 | 92.188 | 128 | 9 | 1 | 45 | 171 | 1 | 128 | 7.83e-82 | 238 |
| MS.gene25829.t1 | MTR_3g079783 | 75.962 | 104 | 20 | 4 | 71 | 171 | 195 | 296 | 1.39e-41 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25829.t1 | AT5G20935 | 79.012 | 81 | 17 | 0 | 89 | 169 | 37 | 117 | 5.41e-41 | 134 |
| MS.gene25829.t1 | AT5G20935 | 77.083 | 48 | 11 | 0 | 89 | 136 | 37 | 84 | 3.65e-19 | 78.2 |
Find 38 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAATTTACCTTGCATTT+TGG | 0.168617 | 3.2:+70160295 | None:intergenic |
| ACTAATGACACTGAAATATT+TGG | 0.193807 | 3.2:+70159485 | None:intergenic |
| CCTTGCCTCAGAGTTAATTC+TGG | 0.251411 | 3.2:-70159338 | MS.gene25829:CDS |
| GATTTGTGGTTTCAATGTTT+TGG | 0.261828 | 3.2:+70159615 | None:intergenic |
| ACTATACTCAACCAGATCTA+AGG | 0.289522 | 3.2:+70158814 | None:intergenic |
| TGGAGCTTCGATGATAATAA+TGG | 0.291436 | 3.2:+70159388 | None:intergenic |
| AAACGTTCAAAGTTGGATAA+AGG | 0.314200 | 3.2:-70159416 | MS.gene25829:CDS |
| CCGTACTGCCCACACATCTT+TGG | 0.332641 | 3.2:+70158880 | None:intergenic |
| CGTACTGCCCACACATCTTT+GGG | 0.353292 | 3.2:+70158881 | None:intergenic |
| ATTGGAACTTATCTTATTGA+TGG | 0.358224 | 3.2:-70158851 | MS.gene25829:CDS |
| GTTGCAATGTTTCTGATTTG+TGG | 0.375721 | 3.2:+70159601 | None:intergenic |
| GGAGCTTCGATGATAATAAT+GGG | 0.430762 | 3.2:+70159389 | None:intergenic |
| AACGTTCAAAGTTGGATAAA+GGG | 0.431347 | 3.2:-70159415 | MS.gene25829:CDS |
| ATATTTCAAGCCCTTAGATC+TGG | 0.435238 | 3.2:-70158825 | MS.gene25829:CDS |
| ATATTTCAGTGTCATTAGTA+AGG | 0.457947 | 3.2:-70159481 | MS.gene25829:CDS |
| CTGTTGTTGAACTTTAGAAA+TGG | 0.461418 | 3.2:+70159530 | None:intergenic |
| ATGTCTTTGTCCCTTTCTTG+TGG | 0.510900 | 3.2:-70159563 | MS.gene25829:CDS |
| CTTTGTGATACCACAAGAAA+GGG | 0.530774 | 3.2:+70159553 | None:intergenic |
| GCTTTGTGATACCACAAGAA+AGG | 0.545899 | 3.2:+70159552 | None:intergenic |
| CCAAAGATGTGTGGGCAGTA+CGG | 0.550493 | 3.2:-70158880 | MS.gene25829:CDS |
| AATTCTGGCTTAGTCAAACC+TGG | 0.553371 | 3.2:-70159323 | MS.gene25829:CDS |
| CAGAATTAACTCTGAGGCAA+GGG | 0.557005 | 3.2:+70159339 | None:intergenic |
| CTATACTCAACCAGATCTAA+GGG | 0.566149 | 3.2:+70158815 | None:intergenic |
| TGGGCAGTACGGCTCAACAT+TGG | 0.579445 | 3.2:-70158869 | MS.gene25829:CDS |
| TCAAACCTGGTGATGTTGGA+AGG | 0.583959 | 3.2:-70159310 | MS.gene25829:intron |
| GGAAGCCTAACAAAAGATGT+TGG | 0.589565 | 3.2:-70160322 | MS.gene25829:CDS |
| AAGAAAGCCCAAAGATGTGT+GGG | 0.590031 | 3.2:-70158888 | MS.gene25829:CDS |
| CCAGAATTAACTCTGAGGCA+AGG | 0.590927 | 3.2:+70159338 | None:intergenic |
| CAAGAAAGCCCAAAGATGTG+TGG | 0.598572 | 3.2:-70158889 | MS.gene25829:CDS |
| TTAGTCAAACCTGGTGATGT+TGG | 0.604419 | 3.2:-70159314 | MS.gene25829:CDS |
| AAATACCTTCCAACATCACC+AGG | 0.606725 | 3.2:+70159305 | None:intergenic |
| TGTTGGTATACCAAAATGCA+AGG | 0.609468 | 3.2:-70160305 | MS.gene25829:intron |
| AGTCATTCAGTTAATACACA+AGG | 0.644330 | 3.2:-70160344 | MS.gene25829:CDS |
| GTCATTCAGTTAATACACAA+GGG | 0.671716 | 3.2:-70160343 | MS.gene25829:CDS |
| TGAATCAAAAGAGTCATCAG+AGG | 0.675313 | 3.2:-70159456 | MS.gene25829:CDS |
| CTAAGCCAGAATTAACTCTG+AGG | 0.700737 | 3.2:+70159333 | None:intergenic |
| ACAGCTTGACGTATCAACAA+CGG | 0.724379 | 3.2:-70159511 | MS.gene25829:CDS |
| GCTTGACGTATCAACAACGG+AGG | 0.741416 | 3.2:-70159508 | MS.gene25829:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTATAAATGATTTAATT+TGG | - | chr3.2:70160050-70160069 | MS.gene25829:intron | 10.0% |
| !! | AATTAATATCATGTATAAAA+TGG | - | chr3.2:70160203-70160222 | MS.gene25829:intron | 10.0% |
| !! | GTAAATAATTATATATCACT+TGG | - | chr3.2:70160233-70160252 | MS.gene25829:intron | 15.0% |
| !!! | AAACTTTTCTATTTTTTTTG+AGG | - | chr3.2:70159273-70159292 | MS.gene25829:intron | 15.0% |
| !!! | ATTTTTGTTTCGTTTTTTAT+TGG | + | chr3.2:70159404-70159423 | None:intergenic | 15.0% |
| !! | AATGAAAAACTTAAAAGATG+AGG | + | chr3.2:70159881-70159900 | None:intergenic | 20.0% |
| !! | GATTAGATACATAGTAAAAA+AGG | + | chr3.2:70160081-70160100 | None:intergenic | 20.0% |
| !!! | TGATTATAATTTTTTTGGGA+AGG | + | chr3.2:70159174-70159193 | None:intergenic | 20.0% |
| ! | AAAATGCAAGGTAAATTTAC+AGG | - | chr3.2:70158865-70158884 | MS.gene25829:CDS | 25.0% |
| ! | ACTAATGACACTGAAATATT+TGG | + | chr3.2:70159676-70159695 | None:intergenic | 25.0% |
| ! | ATAGAAACTATGAGTTAAAC+CGG | - | chr3.2:70159312-70159331 | MS.gene25829:CDS | 25.0% |
| ! | ATTGGAACTTATCTTATTGA+TGG | - | chr3.2:70160307-70160326 | MS.gene25829:CDS | 25.0% |
| ! | TATCATGTATAAAATGGCAA+TGG | - | chr3.2:70160209-70160228 | MS.gene25829:intron | 25.0% |
| !! | ATATTTCAGTGTCATTAGTA+AGG | - | chr3.2:70159677-70159696 | MS.gene25829:intron | 25.0% |
| !! | TAATCTTGTTATAATGAGTG+TGG | + | chr3.2:70159080-70159099 | None:intergenic | 25.0% |
| !! | TGTAAATTTACCTTGCATTT+TGG | + | chr3.2:70158866-70158885 | None:intergenic | 25.0% |
| !! | TTACGTGTAGAAATTTTGTA+AGG | - | chr3.2:70160172-70160191 | MS.gene25829:intron | 25.0% |
| !!! | TTCAATGTTTTGGAATTTGT+TGG | + | chr3.2:70159536-70159555 | None:intergenic | 25.0% |
| !!! | TTCGTTTTTTATTGGTTTAG+TGG | + | chr3.2:70159396-70159415 | None:intergenic | 25.0% |
| AAACGTTCAAAGTTGGATAA+AGG | - | chr3.2:70159742-70159761 | MS.gene25829:intron | 30.0% | |
| AACGTTCAAAGTTGGATAAA+GGG | - | chr3.2:70159743-70159762 | MS.gene25829:intron | 30.0% | |
| AGTCATTCAGTTAATACACA+AGG | - | chr3.2:70158814-70158833 | MS.gene25829:CDS | 30.0% | |
| CTTATCCCATTAAATTGGAT+CGG | - | chr3.2:70159992-70160011 | MS.gene25829:intron | 30.0% | |
| GTCATTCAGTTAATACACAA+GGG | - | chr3.2:70158815-70158834 | MS.gene25829:CDS | 30.0% | |
| ! | CTGTTGTTGAACTTTAGAAA+TGG | + | chr3.2:70159631-70159650 | None:intergenic | 30.0% |
| ! | CTTTTCTACCAATCCAAATA+TGG | - | chr3.2:70158941-70158960 | MS.gene25829:intron | 30.0% |
| ! | GATTTGTGGTTTCAATGTTT+TGG | + | chr3.2:70159546-70159565 | None:intergenic | 30.0% |
| ! | GTATACCAACATCTTTTGTT+AGG | + | chr3.2:70158844-70158863 | None:intergenic | 30.0% |
| !! | CATATTTGGATTGGTAGAAA+AGG | + | chr3.2:70158943-70158962 | None:intergenic | 30.0% |
| !!! | GTTTTGGAATTTGTTGGTTA+TGG | + | chr3.2:70159530-70159549 | None:intergenic | 30.0% |
| AACAAACTCCGAACCATATT+TGG | + | chr3.2:70158957-70158976 | None:intergenic | 35.0% | |
| ACACATACACTGCAAATGAT+TGG | - | chr3.2:70159483-70159502 | MS.gene25829:CDS | 35.0% | |
| ACTATACTCAACCAGATCTA+AGG | + | chr3.2:70160347-70160366 | None:intergenic | 35.0% | |
| ATATTTCAAGCCCTTAGATC+TGG | - | chr3.2:70160333-70160352 | MS.gene25829:CDS | 35.0% | |
| ATGTTGCCGATCCAATTTAA+TGG | + | chr3.2:70160001-70160020 | None:intergenic | 35.0% | |
| CAACACATGCTATTAAGAAC+CGG | + | chr3.2:70159334-70159353 | None:intergenic | 35.0% | |
| CAATTTAATGGGATAAGGCT+TGG | + | chr3.2:70159989-70160008 | None:intergenic | 35.0% | |
| CGATCCAATTTAATGGGATA+AGG | + | chr3.2:70159994-70160013 | None:intergenic | 35.0% | |
| CTACCAATCCAAATATGGTT+CGG | - | chr3.2:70158946-70158965 | MS.gene25829:intron | 35.0% | |
| CTATACTCAACCAGATCTAA+GGG | + | chr3.2:70160346-70160365 | None:intergenic | 35.0% | |
| CTTTGTGATACCACAAGAAA+GGG | + | chr3.2:70159608-70159627 | None:intergenic | 35.0% | |
| GCTTGAAAAACGTTCAAAGT+TGG | - | chr3.2:70159735-70159754 | MS.gene25829:intron | 35.0% | |
| GGAGCTTCGATGATAATAAT+GGG | + | chr3.2:70159772-70159791 | None:intergenic | 35.0% | |
| TATGTGTGAGGAAGGATATT+AGG | + | chr3.2:70159470-70159489 | None:intergenic | 35.0% | |
| TGAATCAAAAGAGTCATCAG+AGG | - | chr3.2:70159702-70159721 | MS.gene25829:intron | 35.0% | |
| TGGAGCTTCGATGATAATAA+TGG | + | chr3.2:70159773-70159792 | None:intergenic | 35.0% | |
| TGTTGCCGATCCAATTTAAT+GGG | + | chr3.2:70160000-70160019 | None:intergenic | 35.0% | |
| TGTTGGTATACCAAAATGCA+AGG | - | chr3.2:70158853-70158872 | MS.gene25829:CDS | 35.0% | |
| ! | CAAGCCTTATCCCATTAAAT+TGG | - | chr3.2:70159987-70160006 | MS.gene25829:intron | 35.0% |
| ! | GTTGCAATGTTTCTGATTTG+TGG | + | chr3.2:70159560-70159579 | None:intergenic | 35.0% |
| !!! | AGCATGTGTTGTTTTGTAGT+AGG | - | chr3.2:70159343-70159362 | MS.gene25829:CDS | 35.0% |
| AAATACCTTCCAACATCACC+AGG | + | chr3.2:70159856-70159875 | None:intergenic | 40.0% | |
| AAGAAAGCCCAAAGATGTGT+GGG | - | chr3.2:70160270-70160289 | MS.gene25829:intron | 40.0% | |
| ACAGCTTGACGTATCAACAA+CGG | - | chr3.2:70159647-70159666 | MS.gene25829:intron | 40.0% | |
| ACTCCGAACCATATTTGGAT+TGG | + | chr3.2:70158952-70158971 | None:intergenic | 40.0% | |
| ATGTCTTTGTCCCTTTCTTG+TGG | - | chr3.2:70159595-70159614 | MS.gene25829:CDS | 40.0% | |
| CTAAGCCAGAATTAACTCTG+AGG | + | chr3.2:70159828-70159847 | None:intergenic | 40.0% | |
| GCTTTGTGATACCACAAGAA+AGG | + | chr3.2:70159609-70159628 | None:intergenic | 40.0% | |
| GGAAGCCTAACAAAAGATGT+TGG | - | chr3.2:70158836-70158855 | MS.gene25829:CDS | 40.0% | |
| GTCACTGTGAAACAGAATGA+AGG | + | chr3.2:70159374-70159393 | None:intergenic | 40.0% | |
| TCATTTGCAGTGTATGTGTG+AGG | + | chr3.2:70159482-70159501 | None:intergenic | 40.0% | |
| ! | TTAGTCAAACCTGGTGATGT+TGG | - | chr3.2:70159844-70159863 | MS.gene25829:intron | 40.0% |
| !! | AATTCTGGCTTAGTCAAACC+TGG | - | chr3.2:70159835-70159854 | MS.gene25829:intron | 40.0% |
| !! | CAGAATTAACTCTGAGGCAA+GGG | + | chr3.2:70159822-70159841 | None:intergenic | 40.0% |
| !! | GCTGCAGTTTTGATCATCTT+TGG | + | chr3.2:70159793-70159812 | None:intergenic | 40.0% |
| CAAGAAAGCCCAAAGATGTG+TGG | - | chr3.2:70160269-70160288 | MS.gene25829:intron | 45.0% | |
| CCTTGCCTCAGAGTTAATTC+TGG | - | chr3.2:70159820-70159839 | MS.gene25829:intron | 45.0% | |
| TTGCAGTGTATGTGTGAGGA+AGG | + | chr3.2:70159478-70159497 | None:intergenic | 45.0% | |
| ! | TCAAACCTGGTGATGTTGGA+AGG | - | chr3.2:70159848-70159867 | MS.gene25829:intron | 45.0% |
| !! | CCAGAATTAACTCTGAGGCA+AGG | + | chr3.2:70159823-70159842 | None:intergenic | 45.0% |
| !!! | AAATATGATTATAATTTTTT+TGG | + | chr3.2:70159179-70159198 | None:intergenic | 5.0% |
| !!! | AATATGATTATAATTTTTTT+GGG | + | chr3.2:70159178-70159197 | None:intergenic | 5.0% |
| !!! | TTATTCAAAAATATTTTTTA+TGG | + | chr3.2:70159044-70159063 | None:intergenic | 5.0% |
| CCAAAGATGTGTGGGCAGTA+CGG | - | chr3.2:70160278-70160297 | MS.gene25829:intron | 50.0% | |
| CGTACTGCCCACACATCTTT+GGG | + | chr3.2:70160280-70160299 | None:intergenic | 50.0% | |
| GCTTGACGTATCAACAACGG+AGG | - | chr3.2:70159650-70159669 | MS.gene25829:intron | 50.0% | |
| CCGTACTGCCCACACATCTT+TGG | + | chr3.2:70160281-70160300 | None:intergenic | 55.0% | |
| TGGGCAGTACGGCTCAACAT+TGG | - | chr3.2:70160289-70160308 | MS.gene25829:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 70158811 | 70160369 | 70158811 | ID=MS.gene25829 |
| chr3.2 | mRNA | 70158811 | 70160369 | 70158811 | ID=MS.gene25829.t1;Parent=MS.gene25829 |
| chr3.2 | exon | 70160306 | 70160369 | 70160306 | ID=MS.gene25829.t1.exon1;Parent=MS.gene25829.t1 |
| chr3.2 | CDS | 70160306 | 70160369 | 70160306 | ID=cds.MS.gene25829.t1;Parent=MS.gene25829.t1 |
| chr3.2 | exon | 70159311 | 70159653 | 70159311 | ID=MS.gene25829.t1.exon2;Parent=MS.gene25829.t1 |
| chr3.2 | CDS | 70159311 | 70159653 | 70159311 | ID=cds.MS.gene25829.t1;Parent=MS.gene25829.t1 |
| chr3.2 | exon | 70158811 | 70158919 | 70158811 | ID=MS.gene25829.t1.exon3;Parent=MS.gene25829.t1 |
| chr3.2 | CDS | 70158811 | 70158919 | 70158811 | ID=cds.MS.gene25829.t1;Parent=MS.gene25829.t1 |
| Gene Sequence |
| Protein sequence |
