Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28563.t1 | XP_003629590.2 | 97.2 | 254 | 5 | 1 | 1 | 254 | 1 | 252 | 9.30E-124 | 453 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28563.t1 | Q2KIJ5 | 28.2 | 188 | 119 | 4 | 9 | 188 | 32 | 211 | 9.1e-11 | 68.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28563.t1 | A0A396GMH5 | 97.2 | 254 | 5 | 1 | 1 | 254 | 1 | 252 | 6.7e-124 | 453.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene28563 | 0.841663 | 4.15E-58 | -1.69E-46 |
| MS.gene049285 | MS.gene28563 | 0.827499 | 1.51E-54 | -1.69E-46 |
| MS.gene049320 | MS.gene28563 | 0.800122 | 1.67E-48 | -1.69E-46 |
| MS.gene049396 | MS.gene28563 | 0.842051 | 3.27E-58 | -1.69E-46 |
| MS.gene049907 | MS.gene28563 | 0.80867 | 2.76E-50 | -1.69E-46 |
| MS.gene05010 | MS.gene28563 | 0.836047 | 1.18E-56 | -1.69E-46 |
| MS.gene050170 | MS.gene28563 | 0.816331 | 5.84E-52 | -1.69E-46 |
| MS.gene050216 | MS.gene28563 | 0.801546 | 8.56E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene28563 | 0.85331 | 2.60E-61 | -1.69E-46 |
| MS.gene050496 | MS.gene28563 | 0.81195 | 5.42E-51 | -1.69E-46 |
| MS.gene050502 | MS.gene28563 | 0.809058 | 2.28E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene28563 | 0.813649 | 2.30E-51 | -1.69E-46 |
| MS.gene050518 | MS.gene28563 | 0.800035 | 1.74E-48 | -1.69E-46 |
| MS.gene050520 | MS.gene28563 | 0.819309 | 1.24E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene28563 | 0.800354 | 1.50E-48 | -1.69E-46 |
| MS.gene050675 | MS.gene28563 | 0.815357 | 9.64E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene28563 | 0.809858 | 1.54E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene28563 | 0.803134 | 4.03E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene28563 | 0.832322 | 1.01E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene28563 | 0.84033 | 9.28E-58 | -1.69E-46 |
| MS.gene050986 | MS.gene28563 | 0.816733 | 4.75E-52 | -1.69E-46 |
| MS.gene051268 | MS.gene28563 | 0.835141 | 1.99E-56 | -1.69E-46 |
| MS.gene051509 | MS.gene28563 | 0.806419 | 8.30E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene28563 | 0.802756 | 4.82E-49 | -1.69E-46 |
| MS.gene051734 | MS.gene28563 | 0.821781 | 3.36E-53 | -1.69E-46 |
| MS.gene051874 | MS.gene28563 | 0.800679 | 1.29E-48 | -1.69E-46 |
| MS.gene051941 | MS.gene28563 | 0.801139 | 1.04E-48 | -1.69E-46 |
| MS.gene052164 | MS.gene28563 | 0.800885 | 1.17E-48 | -1.69E-46 |
| MS.gene052482 | MS.gene28563 | 0.803877 | 2.83E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene28563 | 0.803406 | 3.54E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene28563 | 0.808493 | 3.01E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene28563 | 0.830798 | 2.40E-55 | -1.69E-46 |
| MS.gene053203 | MS.gene28563 | 0.804315 | 2.29E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene28563 | 0.809998 | 1.43E-50 | -1.69E-46 |
| MS.gene053479 | MS.gene28563 | 0.824428 | 8.11E-54 | -1.69E-46 |
| MS.gene053480 | MS.gene28563 | 0.811922 | 5.49E-51 | -1.69E-46 |
| MS.gene053505 | MS.gene28563 | 0.803934 | 2.75E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene28563 | 0.831274 | 1.83E-55 | -1.69E-46 |
| MS.gene053626 | MS.gene28563 | 0.823166 | 1.60E-53 | -1.69E-46 |
| MS.gene053633 | MS.gene28563 | 0.82292 | 1.83E-53 | -1.69E-46 |
| MS.gene053824 | MS.gene28563 | 0.831664 | 1.47E-55 | -1.69E-46 |
| MS.gene054003 | MS.gene28563 | 0.82749 | 1.52E-54 | -1.69E-46 |
| MS.gene054595 | MS.gene28563 | 0.833462 | 5.26E-56 | -1.69E-46 |
| MS.gene05494 | MS.gene28563 | 0.8061 | 9.69E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene28563 | 0.835064 | 2.09E-56 | -1.69E-46 |
| MS.gene055224 | MS.gene28563 | 0.83344 | 5.33E-56 | -1.69E-46 |
| MS.gene055502 | MS.gene28563 | 0.805261 | 1.45E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene28563 | 0.810173 | 1.31E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene28563 | 0.813217 | 2.86E-51 | -1.69E-46 |
| MS.gene056046 | MS.gene28563 | 0.803495 | 3.39E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene28563 | 0.817052 | 4.03E-52 | -1.69E-46 |
| MS.gene056387 | MS.gene28563 | 0.823981 | 1.03E-53 | -1.69E-46 |
| MS.gene056422 | MS.gene28563 | 0.801843 | 7.44E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene28563 | 0.836188 | 1.08E-56 | -1.69E-46 |
| MS.gene056510 | MS.gene28563 | 0.83651 | 8.97E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene28563 | 0.819923 | 9.00E-53 | -1.69E-46 |
| MS.gene057076 | MS.gene28563 | 0.825221 | 5.28E-54 | -1.69E-46 |
| MS.gene05787 | MS.gene28563 | 0.837832 | 4.12E-57 | -1.69E-46 |
| MS.gene057926 | MS.gene28563 | 0.810531 | 1.10E-50 | -1.69E-46 |
| MS.gene058157 | MS.gene28563 | 0.8036 | 3.23E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene28563 | 0.813173 | 2.93E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene28563 | 0.816476 | 5.42E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene28563 | 0.827228 | 1.76E-54 | -1.69E-46 |
| MS.gene059367 | MS.gene28563 | 0.837651 | 4.58E-57 | -1.69E-46 |
| MS.gene059680 | MS.gene28563 | 0.863742 | 2.00E-64 | -1.69E-46 |
| MS.gene059711 | MS.gene28563 | 0.813183 | 2.91E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene28563 | 0.802094 | 6.60E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene28563 | 0.832333 | 1.00E-55 | -1.69E-46 |
| MS.gene06000 | MS.gene28563 | 0.825682 | 4.10E-54 | -1.69E-46 |
| MS.gene060482 | MS.gene28563 | 0.814785 | 1.29E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene28563 | 0.8032 | 3.91E-49 | -1.69E-46 |
| MS.gene060778 | MS.gene28563 | 0.842984 | 1.85E-58 | -1.69E-46 |
| MS.gene06077 | MS.gene28563 | 0.802841 | 4.63E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene28563 | 0.817067 | 4.00E-52 | -1.69E-46 |
| MS.gene06097 | MS.gene28563 | 0.80525 | 1.46E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene28563 | 0.824034 | 1.00E-53 | -1.69E-46 |
| MS.gene061218 | MS.gene28563 | 0.801737 | 7.82E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28563.t1 | MTR_8g079810 | 98.008 | 251 | 3 | 1 | 4 | 254 | 1 | 249 | 0.0 | 504 |
| MS.gene28563.t1 | MTR_2g022600 | 25.967 | 181 | 123 | 3 | 14 | 191 | 40 | 212 | 2.28e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28563.t1 | AT3G50560 | 67.164 | 268 | 73 | 2 | 1 | 253 | 2 | 269 | 5.61e-126 | 358 |
Find 69 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGCTCTGCTTCTTTAAA+TGG | 0.216932 | 8.4:-27223780 | MS.gene28563:CDS |
| CAAGGGAAGTTTGGAAAGTT+TGG | 0.239457 | 8.4:+27224019 | None:intergenic |
| GCTTCTTTAAATGGCATTGC+AGG | 0.309696 | 8.4:-27223771 | MS.gene28563:CDS |
| ATGAACGAACATCCATTTCT+TGG | 0.333809 | 8.4:+27222745 | None:intergenic |
| CGCCTTCAACTGTGCTCAAC+AGG | 0.354644 | 8.4:-27223980 | MS.gene28563:intron |
| ATTAGGACCGACGCCAACTA+TGG | 0.357925 | 8.4:+27224542 | None:intergenic |
| ATGAAACGGCAAGGGAAGTT+TGG | 0.367798 | 8.4:+27224010 | None:intergenic |
| TTTCCTCTTTCAACCATTCC+CGG | 0.371758 | 8.4:+27223822 | None:intergenic |
| TTTCTTGGGTCCATGCATTC+CGG | 0.380172 | 8.4:+27222760 | None:intergenic |
| TCCCTTGCCGTTTCATCCCT+CGG | 0.388630 | 8.4:-27224003 | MS.gene28563:CDS |
| ATGCATTGGCTCAAACATAT+TGG | 0.404371 | 8.4:-27222800 | MS.gene28563:CDS |
| ATGTTGAAAAGGAGTTGGTT+TGG | 0.421399 | 8.4:+27224050 | None:intergenic |
| TATGTTTGAGCCAATGCATC+CGG | 0.433151 | 8.4:+27222804 | None:intergenic |
| TGGATTGAGAGATGTTGAAA+AGG | 0.438146 | 8.4:+27224039 | None:intergenic |
| AGTGTAAAAGAAGCATTTGA+AGG | 0.449118 | 8.4:-27224138 | MS.gene28563:CDS |
| GCCATCCTCGCCCGTGACTT+AGG | 0.454853 | 8.4:-27224471 | MS.gene28563:intron |
| TGAACGAACATCCATTTCTT+GGG | 0.457910 | 8.4:+27222746 | None:intergenic |
| GGTAATATTGCAGCCATAGT+TGG | 0.459882 | 8.4:-27224555 | MS.gene28563:CDS |
| GAATGCATGGACCCAAGAAA+TGG | 0.461502 | 8.4:-27222757 | MS.gene28563:CDS |
| AAAGGAACAATTCTATTCAC+TGG | 0.475162 | 8.4:-27223801 | MS.gene28563:CDS |
| TGAAATAGCAAGGGAAGAAA+AGG | 0.479373 | 8.4:-27224202 | MS.gene28563:CDS |
| TACCTGTTGAGCACAGTTGA+AGG | 0.480690 | 8.4:+27223978 | None:intergenic |
| GCTCGCAAGTTTGCTCATGA+AGG | 0.481049 | 8.4:-27224504 | MS.gene28563:CDS |
| GCGATGGAGAGGCCGAGATT+AGG | 0.485603 | 8.4:+27224525 | None:intergenic |
| GAGAGATGTTGAAAAGGAGT+TGG | 0.485715 | 8.4:+27224045 | None:intergenic |
| AAGTGGTGGTGAGAGTGTTA+TGG | 0.486623 | 8.4:-27222829 | MS.gene28563:CDS |
| ATTTATGAATTAGGTGCTGC+CGG | 0.492617 | 8.4:-27223841 | MS.gene28563:intron |
| TCGTCGCGAGGAGGAGGAAG+TGG | 0.500915 | 8.4:-27222846 | MS.gene28563:CDS |
| ATATTGGCATATACACGTTC+AGG | 0.501804 | 8.4:-27222784 | MS.gene28563:CDS |
| ACCTAAGTCACGGGCGAGGA+TGG | 0.502538 | 8.4:+27224470 | None:intergenic |
| TTTGAAGGTGTACTTTCACT+TGG | 0.508660 | 8.4:-27224123 | MS.gene28563:CDS |
| TGTTATGGACCCGGATGCAT+TGG | 0.516123 | 8.4:-27222814 | MS.gene28563:CDS |
| GGCATATACACGTTCAGGAC+CGG | 0.520194 | 8.4:-27222779 | MS.gene28563:CDS |
| GTAGCTCATATTATTATCGA+TGG | 0.524070 | 8.4:-27223557 | MS.gene28563:CDS |
| ACGATGTCGTCGCGAGGAGG+AGG | 0.527856 | 8.4:-27222852 | MS.gene28563:CDS |
| CAAACGAAACGCACCTTGGT+GGG | 0.529770 | 8.4:+27223525 | None:intergenic |
| ACAAACGAAACGCACCTTGG+TGG | 0.530352 | 8.4:+27223524 | None:intergenic |
| ATGAGCAAACTTGCGAGCGA+TGG | 0.536721 | 8.4:+27224509 | None:intergenic |
| TACATTCATACCTAAGTCAC+GGG | 0.542393 | 8.4:+27224461 | None:intergenic |
| GAAGGCGCCGAGGGATGAAA+CGG | 0.542643 | 8.4:+27223996 | None:intergenic |
| GAATTAGGTGCTGCCGGGAA+TGG | 0.547598 | 8.4:-27223835 | MS.gene28563:intron |
| GGAATGGTTGAAAGAGGAAA+AGG | 0.550184 | 8.4:-27223819 | MS.gene28563:CDS |
| CGCCGAGGGATGAAACGGCA+AGG | 0.552431 | 8.4:+27224001 | None:intergenic |
| GCTAGAGAATTTCAGCCTCA+AGG | 0.567416 | 8.4:-27223587 | MS.gene28563:CDS |
| ACGTTCAGGACCGGAATGCA+TGG | 0.567516 | 8.4:-27222770 | MS.gene28563:CDS |
| TTTATGAATTAGGTGCTGCC+GGG | 0.568009 | 8.4:-27223840 | MS.gene28563:intron |
| GGAGTTGGTTTGGATTGAAG+AGG | 0.572556 | 8.4:+27224060 | None:intergenic |
| TATGGGGTGCAGAGGATCAT+CGG | 0.575217 | 8.4:-27222886 | MS.gene28563:intron |
| GTTGGCGTCGGTCCTAATCT+CGG | 0.576317 | 8.4:-27224537 | MS.gene28563:CDS |
| GCCGAGGGATGAAACGGCAA+GGG | 0.581874 | 8.4:+27224002 | None:intergenic |
| AGCACAGTTGAAGGCGCCGA+GGG | 0.582313 | 8.4:+27223987 | None:intergenic |
| ATGTTTGAGCCAATGCATCC+GGG | 0.591141 | 8.4:+27222805 | None:intergenic |
| CAAACTTGCGAGCGATGGAG+AGG | 0.595122 | 8.4:+27224514 | None:intergenic |
| ATACATTCATACCTAAGTCA+CGG | 0.596054 | 8.4:+27224460 | None:intergenic |
| CTGCCGGGAATGGTTGAAAG+AGG | 0.597430 | 8.4:-27223825 | MS.gene28563:CDS |
| GTCACGGGCGAGGATGGCAA+CGG | 0.598987 | 8.4:+27224476 | None:intergenic |
| TCGCGAGGAGGAGGAAGTGG+TGG | 0.617268 | 8.4:-27222843 | MS.gene28563:CDS |
| AGAAACATGGCAAGCTCACG+AGG | 0.620180 | 8.4:-27224576 | MS.gene28563:CDS |
| TGGTGAGAGTGTTATGGACC+CGG | 0.622308 | 8.4:-27222823 | MS.gene28563:CDS |
| GATTTGCAGATGAAATAGCA+AGG | 0.631251 | 8.4:-27224212 | MS.gene28563:CDS |
| ATTTGCAGATGAAATAGCAA+GGG | 0.637104 | 8.4:-27224211 | MS.gene28563:CDS |
| TCATACCTAAGTCACGGGCG+AGG | 0.643162 | 8.4:+27224466 | None:intergenic |
| TGAGCTACATGCACTCCTTG+AGG | 0.648657 | 8.4:+27223572 | None:intergenic |
| GAGCACAGTTGAAGGCGCCG+AGG | 0.649759 | 8.4:+27223986 | None:intergenic |
| ATTGCAGCCATAGTTGGCGT+CGG | 0.656355 | 8.4:-27224549 | MS.gene28563:CDS |
| ACAACAACGATGTCGTCGCG+AGG | 0.673569 | 8.4:-27222858 | MS.gene28563:CDS |
| ACAACGATGTCGTCGCGAGG+AGG | 0.685555 | 8.4:-27222855 | MS.gene28563:CDS |
| GAGGTGCACGATGAGAAACA+TGG | 0.687039 | 8.4:-27224589 | None:intergenic |
| GTGTGCATGAGACAGGCTGT+GGG | 0.704247 | 8.4:-27223643 | MS.gene28563:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAATGATTTATGAATT+AGG | - | chr8.4:27223463-27223482 | MS.gene28563:intron | 10.0% |
| !! | TAGGAAATATATATATATAA+TGG | + | chr8.4:27223909-27223928 | None:intergenic | 10.0% |
| !! | AATGAATATATATGAATGAC+AGG | + | chr8.4:27223850-27223869 | None:intergenic | 20.0% |
| !! | ACATAGATGTATATTAGTTA+TGG | + | chr8.4:27223943-27223962 | None:intergenic | 20.0% |
| !! | GTCATTCATATATATTCATT+GGG | - | chr8.4:27223850-27223869 | MS.gene28563:intron | 20.0% |
| !! | TGTCATTCATATATATTCAT+TGG | - | chr8.4:27223849-27223868 | MS.gene28563:intron | 20.0% |
| !! | TTATGTTTGATTGAATTGAA+GGG | - | chr8.4:27223019-27223038 | MS.gene28563:intron | 20.0% |
| !! | TTTATGTTTGATTGAATTGA+AGG | - | chr8.4:27223018-27223037 | MS.gene28563:intron | 20.0% |
| !!! | AGATAAAACGTTAAATTTTC+AGG | - | chr8.4:27224215-27224234 | MS.gene28563:CDS | 20.0% |
| !!! | AGATACCATTTTAGAAATTT+GGG | + | chr8.4:27224278-27224297 | None:intergenic | 20.0% |
| !!! | ATTATTATCGATGGTTTTAT+TGG | - | chr8.4:27223765-27223784 | MS.gene28563:CDS | 20.0% |
| !!! | TAAATGACTTGTTATGTTAT+GGG | - | chr8.4:27224410-27224429 | MS.gene28563:intron | 20.0% |
| !!! | TGATTTTCTTAAATTATCAG+CGG | - | chr8.4:27224040-27224059 | MS.gene28563:CDS | 20.0% |
| !!! | TTCATCTATAACATACTTTT+TGG | - | chr8.4:27222892-27222911 | MS.gene28563:intron | 20.0% |
| ! | ATTATAAATTGAACTGATGC+AGG | - | chr8.4:27223067-27223086 | MS.gene28563:intron | 25.0% |
| ! | CTACATACACATAAGATTTA+AGG | - | chr8.4:27224130-27224149 | MS.gene28563:CDS | 25.0% |
| ! | TAACAAGTCATTTACACAAT+AGG | + | chr8.4:27224404-27224423 | None:intergenic | 25.0% |
| ! | TAGATGTATATTAGTTATGG+TGG | + | chr8.4:27223940-27223959 | None:intergenic | 25.0% |
| ! | TTATAAATTGAACTGATGCA+GGG | - | chr8.4:27223068-27223087 | MS.gene28563:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | + | chr8.4:27224015-27224034 | None:intergenic | 25.0% |
| !! | ACAATCATCATTTTACATGT+AGG | - | chr8.4:27224352-27224371 | MS.gene28563:intron | 25.0% |
| !! | TCTATCCCAAATTTCTAAAA+TGG | - | chr8.4:27224270-27224289 | MS.gene28563:intron | 25.0% |
| !!! | AAATGACTTGTTATGTTATG+GGG | - | chr8.4:27224411-27224430 | MS.gene28563:intron | 25.0% |
| !!! | CAGATACCATTTTAGAAATT+TGG | + | chr8.4:27224279-27224298 | None:intergenic | 25.0% |
| !!! | GTAAATGACTTGTTATGTTA+TGG | - | chr8.4:27224409-27224428 | MS.gene28563:intron | 25.0% |
| AAAGGAACAATTCTATTCAC+TGG | - | chr8.4:27223512-27223531 | MS.gene28563:intron | 30.0% | |
| AGATCTATGAAGCACAAATA+CGG | + | chr8.4:27224112-27224131 | None:intergenic | 30.0% | |
| ATACATTCATACCTAAGTCA+CGG | + | chr8.4:27222856-27222875 | None:intergenic | 30.0% | |
| ATATTGTCAAGAGTTCTACA+TGG | - | chr8.4:27224188-27224207 | MS.gene28563:CDS | 30.0% | |
| ATGAATGACAGGAAAAGAAA+AGG | + | chr8.4:27223839-27223858 | None:intergenic | 30.0% | |
| ATTTGCAGATGAAATAGCAA+GGG | - | chr8.4:27223102-27223121 | MS.gene28563:intron | 30.0% | |
| GACAGAAACATTTGATATGT+TGG | + | chr8.4:27223381-27223400 | None:intergenic | 30.0% | |
| GGAATGAAATATATGCAAGT+AGG | + | chr8.4:27223888-27223907 | None:intergenic | 30.0% | |
| GTAGCTCATATTATTATCGA+TGG | - | chr8.4:27223756-27223775 | MS.gene28563:intron | 30.0% | |
| TGAATGACAGGAAAAGAAAA+GGG | + | chr8.4:27223838-27223857 | None:intergenic | 30.0% | |
| ! | AGTTATGGTGGAATTAGAAT+AGG | + | chr8.4:27223928-27223947 | None:intergenic | 30.0% |
| !! | AGTGTAAAAGAAGCATTTGA+AGG | - | chr8.4:27223175-27223194 | MS.gene28563:intron | 30.0% |
| !! | TTTACATGTAGGTTTTGTGA+CGG | - | chr8.4:27224363-27224382 | MS.gene28563:intron | 30.0% |
| ACATCTATGTAGACATTCCT+CGG | - | chr8.4:27223953-27223972 | MS.gene28563:intron | 35.0% | |
| AGAAAAGGGAAAGAAGATCT+AGG | + | chr8.4:27223824-27223843 | None:intergenic | 35.0% | |
| ATATTGGCATATACACGTTC+AGG | - | chr8.4:27224529-27224548 | MS.gene28563:CDS | 35.0% | |
| ATGAACGAACATCCATTTCT+TGG | + | chr8.4:27224571-27224590 | None:intergenic | 35.0% | |
| ATGAAGCACAAATACGGATT+TGG | + | chr8.4:27224106-27224125 | None:intergenic | 35.0% | |
| GATTTGCAGATGAAATAGCA+AGG | - | chr8.4:27223101-27223120 | MS.gene28563:intron | 35.0% | |
| TACATTCATACCTAAGTCAC+GGG | + | chr8.4:27222855-27222874 | None:intergenic | 35.0% | |
| TCTTAAATTATCAGCGGTGT+CGG | - | chr8.4:27224046-27224065 | MS.gene28563:CDS | 35.0% | |
| TGAAATAGCAAGGGAAGAAA+AGG | - | chr8.4:27223111-27223130 | MS.gene28563:intron | 35.0% | |
| TGAACGAACATCCATTTCTT+GGG | + | chr8.4:27224570-27224589 | None:intergenic | 35.0% | |
| TGGATTGAGAGATGTTGAAA+AGG | + | chr8.4:27223277-27223296 | None:intergenic | 35.0% | |
| ! | ATGTTGAAAAGGAGTTGGTT+TGG | + | chr8.4:27223266-27223285 | None:intergenic | 35.0% |
| ! | ATTTATGAATTAGGTGCTGC+CGG | - | chr8.4:27223472-27223491 | MS.gene28563:intron | 35.0% |
| ! | TTTGAAGGTGTACTTTCACT+TGG | - | chr8.4:27223190-27223209 | MS.gene28563:intron | 35.0% |
| !! | ATGCATTGGCTCAAACATAT+TGG | - | chr8.4:27224513-27224532 | MS.gene28563:CDS | 35.0% |
| AGAGAACATTGCATTGCATG+TGG | - | chr8.4:27223646-27223665 | MS.gene28563:intron | 40.0% | |
| CAAGGGAAGTTTGGAAAGTT+TGG | + | chr8.4:27223297-27223316 | None:intergenic | 40.0% | |
| CACAAATACGGATTTGGACA+CGG | + | chr8.4:27224100-27224119 | None:intergenic | 40.0% | |
| GAGAGATGTTGAAAAGGAGT+TGG | + | chr8.4:27223271-27223290 | None:intergenic | 40.0% | |
| GCTTCTTTAAATGGCATTGC+AGG | - | chr8.4:27223542-27223561 | MS.gene28563:CDS | 40.0% | |
| GGAATGGTTGAAAGAGGAAA+AGG | - | chr8.4:27223494-27223513 | MS.gene28563:intron | 40.0% | |
| GGTAATATTGCAGCCATAGT+TGG | - | chr8.4:27222758-27222777 | MS.gene28563:CDS | 40.0% | |
| GGTTGCTCTGCTTCTTTAAA+TGG | - | chr8.4:27223533-27223552 | MS.gene28563:intron | 40.0% | |
| TAAACAAACGAAACGCACCT+TGG | + | chr8.4:27223795-27223814 | None:intergenic | 40.0% | |
| TAAATTGAACTGATGCAGGG+AGG | - | chr8.4:27223071-27223090 | MS.gene28563:intron | 40.0% | |
| TACGTAAACTAGTCGCATAG+AGG | + | chr8.4:27224330-27224349 | None:intergenic | 40.0% | |
| TATGTTTGAGCCAATGCATC+CGG | + | chr8.4:27224512-27224531 | None:intergenic | 40.0% | |
| TCGCATAGAGGTAATCAAGT+GGG | + | chr8.4:27224318-27224337 | None:intergenic | 40.0% | |
| TTTCCTCTTTCAACCATTCC+CGG | + | chr8.4:27223494-27223513 | None:intergenic | 40.0% | |
| ! | TTTATGAATTAGGTGCTGCC+GGG | - | chr8.4:27223473-27223492 | MS.gene28563:intron | 40.0% |
| !! | AGGTTTTGTGACGGAGAATT+AGG | - | chr8.4:27224372-27224391 | MS.gene28563:intron | 40.0% |
| !! | TCTATGCGACTAGTTTACGT+AGG | - | chr8.4:27224329-27224348 | MS.gene28563:intron | 40.0% |
| ACGGATTTGGACACGGATAT+CGG | + | chr8.4:27224093-27224112 | None:intergenic | 45.0% | |
| ATCAAGACACGTCTAATCCG+AGG | + | chr8.4:27223973-27223992 | None:intergenic | 45.0% | |
| ATGAAACGGCAAGGGAAGTT+TGG | + | chr8.4:27223306-27223325 | None:intergenic | 45.0% | |
| ATGTTTGAGCCAATGCATCC+GGG | + | chr8.4:27224511-27224530 | None:intergenic | 45.0% | |
| GAATGCATGGACCCAAGAAA+TGG | - | chr8.4:27224556-27224575 | MS.gene28563:CDS | 45.0% | |
| GCTAGAGAATTTCAGCCTCA+AGG | - | chr8.4:27223726-27223745 | MS.gene28563:intron | 45.0% | |
| GTCGCATAGAGGTAATCAAG+TGG | + | chr8.4:27224319-27224338 | None:intergenic | 45.0% | |
| TACCTGTTGAGCACAGTTGA+AGG | + | chr8.4:27223338-27223357 | None:intergenic | 45.0% | |
| TGTTATGTTATGGGGTGCAG+AGG | - | chr8.4:27224419-27224438 | MS.gene28563:intron | 45.0% | |
| TTTCTTGGGTCCATGCATTC+CGG | + | chr8.4:27224556-27224575 | None:intergenic | 45.0% | |
| !! | AAGTGGTGGTGAGAGTGTTA+TGG | - | chr8.4:27224484-27224503 | MS.gene28563:CDS | 45.0% |
| !! | GGAGTTGGTTTGGATTGAAG+AGG | + | chr8.4:27223256-27223275 | None:intergenic | 45.0% |
| !!! | ATGGTTTTATTGGCCCACCA+AGG | - | chr8.4:27223775-27223794 | MS.gene28563:CDS | 45.0% |
| ACAAACGAAACGCACCTTGG+TGG | + | chr8.4:27223792-27223811 | None:intergenic | 50.0% | |
| AGAAACATGGCAAGCTCACG+AGG | - | chr8.4:27222737-27222756 | MS.gene28563:CDS | 50.0% | |
| ATGAGCAAACTTGCGAGCGA+TGG | + | chr8.4:27222807-27222826 | None:intergenic | 50.0% | |
| ATGTGGTGTGTGCATGAGAC+AGG | - | chr8.4:27223663-27223682 | MS.gene28563:intron | 50.0% | |
| ATTAGGACCGACGCCAACTA+TGG | + | chr8.4:27222774-27222793 | None:intergenic | 50.0% | |
| ATTGCAGCCATAGTTGGCGT+CGG | - | chr8.4:27222764-27222783 | MS.gene28563:CDS | 50.0% | |
| CAAACGAAACGCACCTTGGT+GGG | + | chr8.4:27223791-27223810 | None:intergenic | 50.0% | |
| CACGGATATCGGACACGATA+TGG | + | chr8.4:27224082-27224101 | None:intergenic | 50.0% | |
| GGCATATACACGTTCAGGAC+CGG | - | chr8.4:27224534-27224553 | MS.gene28563:CDS | 50.0% | |
| TATGGGGTGCAGAGGATCAT+CGG | - | chr8.4:27224427-27224446 | MS.gene28563:intron | 50.0% | |
| TGAGCTACATGCACTCCTTG+AGG | + | chr8.4:27223744-27223763 | None:intergenic | 50.0% | |
| TGTCGGTATCGTGTCAGTGT+CGG | + | chr8.4:27223998-27224017 | None:intergenic | 50.0% | |
| TGTTATGGACCCGGATGCAT+TGG | - | chr8.4:27224499-27224518 | MS.gene28563:CDS | 50.0% | |
| ! | GCTCGCAAGTTTGCTCATGA+AGG | - | chr8.4:27222809-27222828 | MS.gene28563:CDS | 50.0% |
| !! | TGGTGAGAGTGTTATGGACC+CGG | - | chr8.4:27224490-27224509 | MS.gene28563:CDS | 50.0% |
| ACAACAACGATGTCGTCGCG+AGG | - | chr8.4:27224455-27224474 | MS.gene28563:intron | 55.0% | |
| ACGTTCAGGACCGGAATGCA+TGG | - | chr8.4:27224543-27224562 | MS.gene28563:CDS | 55.0% | |
| CAAACTTGCGAGCGATGGAG+AGG | + | chr8.4:27222802-27222821 | None:intergenic | 55.0% | |
| CGCCTTCAACTGTGCTCAAC+AGG | - | chr8.4:27223333-27223352 | MS.gene28563:intron | 55.0% | |
| CTGCCGGGAATGGTTGAAAG+AGG | - | chr8.4:27223488-27223507 | MS.gene28563:intron | 55.0% | |
| GTGTGCATGAGACAGGCTGT+GGG | - | chr8.4:27223670-27223689 | MS.gene28563:intron | 55.0% | |
| TCATACCTAAGTCACGGGCG+AGG | + | chr8.4:27222850-27222869 | None:intergenic | 55.0% | |
| TGTGTGCATGAGACAGGCTG+TGG | - | chr8.4:27223669-27223688 | MS.gene28563:intron | 55.0% | |
| ! | GAATTAGGTGCTGCCGGGAA+TGG | - | chr8.4:27223478-27223497 | MS.gene28563:intron | 55.0% |
| ! | TCCCTTGCCGTTTCATCCCT+CGG | - | chr8.4:27223310-27223329 | MS.gene28563:intron | 55.0% |
| !! | GTTGGCGTCGGTCCTAATCT+CGG | - | chr8.4:27222776-27222795 | MS.gene28563:CDS | 55.0% |
| !! | TTATCAGCGGTGTCGGCTGT+CGG | - | chr8.4:27224053-27224072 | MS.gene28563:CDS | 55.0% |
| ACAACGATGTCGTCGCGAGG+AGG | - | chr8.4:27224458-27224477 | MS.gene28563:intron | 60.0% | |
| ACCTAAGTCACGGGCGAGGA+TGG | + | chr8.4:27222846-27222865 | None:intergenic | 60.0% | |
| GCCGAGGGATGAAACGGCAA+GGG | + | chr8.4:27223314-27223333 | None:intergenic | 60.0% | |
| GCGATGGAGAGGCCGAGATT+AGG | + | chr8.4:27222791-27222810 | None:intergenic | 60.0% | |
| !! | AGCACAGTTGAAGGCGCCGA+GGG | + | chr8.4:27223329-27223348 | None:intergenic | 60.0% |
| !! | GAAGGCGCCGAGGGATGAAA+CGG | + | chr8.4:27223320-27223339 | None:intergenic | 60.0% |
| ACGATGTCGTCGCGAGGAGG+AGG | - | chr8.4:27224461-27224480 | MS.gene28563:intron | 65.0% | |
| CGCCGAGGGATGAAACGGCA+AGG | + | chr8.4:27223315-27223334 | None:intergenic | 65.0% | |
| GCCATCCTCGCCCGTGACTT+AGG | - | chr8.4:27222842-27222861 | MS.gene28563:CDS | 65.0% | |
| GTCACGGGCGAGGATGGCAA+CGG | + | chr8.4:27222840-27222859 | None:intergenic | 65.0% | |
| TCGCGAGGAGGAGGAAGTGG+TGG | - | chr8.4:27224470-27224489 | MS.gene28563:intron | 65.0% | |
| TCGTCGCGAGGAGGAGGAAG+TGG | - | chr8.4:27224467-27224486 | MS.gene28563:intron | 65.0% | |
| !! | GAGCACAGTTGAAGGCGCCG+AGG | + | chr8.4:27223330-27223349 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 27222734 | 27224601 | 27222734 | ID=MS.gene28563 |
| chr8.4 | mRNA | 27222734 | 27224601 | 27222734 | ID=MS.gene28563.t1;Parent=MS.gene28563 |
| chr8.4 | exon | 27224472 | 27224601 | 27224472 | ID=MS.gene28563.t1.exon1;Parent=MS.gene28563.t1 |
| chr8.4 | CDS | 27224472 | 27224601 | 27224472 | ID=cds.MS.gene28563.t1;Parent=MS.gene28563.t1 |
| chr8.4 | exon | 27223981 | 27224246 | 27223981 | ID=MS.gene28563.t1.exon2;Parent=MS.gene28563.t1 |
| chr8.4 | CDS | 27223981 | 27224246 | 27223981 | ID=cds.MS.gene28563.t1;Parent=MS.gene28563.t1 |
| chr8.4 | exon | 27223757 | 27223850 | 27223757 | ID=MS.gene28563.t1.exon3;Parent=MS.gene28563.t1 |
| chr8.4 | CDS | 27223757 | 27223850 | 27223757 | ID=cds.MS.gene28563.t1;Parent=MS.gene28563.t1 |
| chr8.4 | exon | 27223539 | 27223650 | 27223539 | ID=MS.gene28563.t1.exon4;Parent=MS.gene28563.t1 |
| chr8.4 | CDS | 27223539 | 27223650 | 27223539 | ID=cds.MS.gene28563.t1;Parent=MS.gene28563.t1 |
| chr8.4 | exon | 27222734 | 27222896 | 27222734 | ID=MS.gene28563.t1.exon5;Parent=MS.gene28563.t1 |
| chr8.4 | CDS | 27222734 | 27222896 | 27222734 | ID=cds.MS.gene28563.t1;Parent=MS.gene28563.t1 |
| Gene Sequence |
| Protein sequence |
