Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33717.t1 | XP_003604582.1 | 98.3 | 229 | 4 | 0 | 1 | 229 | 1 | 229 | 3.20E-123 | 451.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33717.t1 | Q8LBZ4 | 34.4 | 154 | 83 | 4 | 77 | 229 | 168 | 304 | 3.4e-17 | 90.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33717.t1 | G7JLU6 | 98.3 | 229 | 4 | 0 | 1 | 229 | 1 | 229 | 2.3e-123 | 451.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene33717 | 0.825609 | 4.27E-54 | -1.69E-46 |
| MS.gene049151 | MS.gene33717 | 0.822568 | 2.21E-53 | -1.69E-46 |
| MS.gene049153 | MS.gene33717 | 0.816054 | 6.74E-52 | -1.69E-46 |
| MS.gene049260 | MS.gene33717 | 0.837529 | 4.92E-57 | -1.69E-46 |
| MS.gene049297 | MS.gene33717 | 0.812317 | 4.51E-51 | -1.69E-46 |
| MS.gene049599 | MS.gene33717 | -0.824135 | 9.51E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene33717 | 0.887918 | 9.35E-73 | -1.69E-46 |
| MS.gene049915 | MS.gene33717 | 0.831735 | 1.41E-55 | -1.69E-46 |
| MS.gene050099 | MS.gene33717 | 0.812783 | 3.56E-51 | -1.69E-46 |
| MS.gene050128 | MS.gene33717 | 0.823045 | 1.71E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene33717 | 0.810593 | 1.07E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene33717 | 0.818767 | 1.65E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene33717 | 0.800592 | 1.34E-48 | -1.69E-46 |
| MS.gene050301 | MS.gene33717 | 0.857116 | 2.03E-62 | -1.69E-46 |
| MS.gene050330 | MS.gene33717 | -0.82415 | 9.43E-54 | -1.69E-46 |
| MS.gene050397 | MS.gene33717 | 0.825703 | 4.06E-54 | -1.69E-46 |
| MS.gene050464 | MS.gene33717 | 0.804516 | 2.08E-49 | -1.69E-46 |
| MS.gene050516 | MS.gene33717 | 0.812232 | 4.70E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene33717 | 0.836199 | 1.08E-56 | -1.69E-46 |
| MS.gene050558 | MS.gene33717 | 0.819978 | 8.74E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene33717 | -0.849775 | 2.60E-60 | -1.69E-46 |
| MS.gene050642 | MS.gene33717 | 0.845276 | 4.49E-59 | -1.69E-46 |
| MS.gene05119 | MS.gene33717 | -0.817063 | 4.00E-52 | -1.69E-46 |
| MS.gene051471 | MS.gene33717 | 0.814934 | 1.20E-51 | -1.69E-46 |
| MS.gene051662 | MS.gene33717 | 0.816358 | 5.76E-52 | -1.69E-46 |
| MS.gene051663 | MS.gene33717 | 0.829764 | 4.29E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene33717 | 0.852096 | 5.78E-61 | -1.69E-46 |
| MS.gene051983 | MS.gene33717 | 0.851777 | 7.12E-61 | -1.69E-46 |
| MS.gene052077 | MS.gene33717 | 0.828504 | 8.67E-55 | -1.69E-46 |
| MS.gene052078 | MS.gene33717 | 0.826626 | 2.45E-54 | -1.69E-46 |
| MS.gene052178 | MS.gene33717 | 0.845417 | 4.12E-59 | -1.69E-46 |
| MS.gene052188 | MS.gene33717 | 0.826567 | 2.53E-54 | -1.69E-46 |
| MS.gene052207 | MS.gene33717 | 0.83059 | 2.70E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene33717 | 0.817781 | 2.76E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene33717 | -0.802375 | 5.78E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene33717 | 0.834562 | 2.79E-56 | -1.69E-46 |
| MS.gene052600 | MS.gene33717 | 0.817788 | 2.75E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene33717 | 0.800284 | 1.55E-48 | -1.69E-46 |
| MS.gene053557 | MS.gene33717 | 0.836668 | 8.18E-57 | -1.69E-46 |
| MS.gene053836 | MS.gene33717 | 0.878878 | 1.97E-69 | -1.69E-46 |
| MS.gene053907 | MS.gene33717 | 0.804256 | 2.36E-49 | -1.69E-46 |
| MS.gene054184 | MS.gene33717 | 0.830065 | 3.62E-55 | -1.69E-46 |
| MS.gene054185 | MS.gene33717 | 0.835336 | 1.78E-56 | -1.69E-46 |
| MS.gene054473 | MS.gene33717 | 0.810849 | 9.39E-51 | -1.69E-46 |
| MS.gene054542 | MS.gene33717 | 0.816099 | 6.59E-52 | -1.69E-46 |
| MS.gene054667 | MS.gene33717 | 0.806766 | 7.01E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene33717 | 0.840998 | 6.20E-58 | -1.69E-46 |
| MS.gene054942 | MS.gene33717 | 0.816837 | 4.50E-52 | -1.69E-46 |
| MS.gene054983 | MS.gene33717 | 0.819665 | 1.03E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene33717 | 0.804747 | 1.86E-49 | -1.69E-46 |
| MS.gene055133 | MS.gene33717 | 0.815639 | 8.34E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene33717 | 0.844362 | 7.92E-59 | -1.69E-46 |
| MS.gene055390 | MS.gene33717 | 0.825002 | 5.94E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene33717 | 0.872556 | 2.91E-67 | -1.69E-46 |
| MS.gene055428 | MS.gene33717 | 0.831089 | 2.03E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene33717 | 0.84133 | 5.07E-58 | -1.69E-46 |
| MS.gene056069 | MS.gene33717 | -0.825706 | 4.05E-54 | -1.69E-46 |
| MS.gene056447 | MS.gene33717 | 0.806679 | 7.32E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene33717 | 0.863672 | 2.11E-64 | -1.69E-46 |
| MS.gene056659 | MS.gene33717 | 0.805419 | 1.35E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene33717 | 0.850421 | 1.72E-60 | -1.69E-46 |
| MS.gene05702 | MS.gene33717 | 0.814907 | 1.21E-51 | -1.69E-46 |
| MS.gene057121 | MS.gene33717 | 0.859384 | 4.29E-63 | -1.69E-46 |
| MS.gene057245 | MS.gene33717 | 0.802776 | 4.78E-49 | -1.69E-46 |
| MS.gene057260 | MS.gene33717 | 0.802613 | 5.16E-49 | -1.69E-46 |
| MS.gene057439 | MS.gene33717 | 0.834669 | 2.62E-56 | -1.69E-46 |
| MS.gene057448 | MS.gene33717 | 0.813716 | 2.22E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene33717 | 0.815804 | 7.66E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene33717 | 0.808019 | 3.80E-50 | -1.69E-46 |
| MS.gene057754 | MS.gene33717 | 0.825619 | 4.25E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene33717 | 0.851703 | 7.47E-61 | -1.69E-46 |
| MS.gene058082 | MS.gene33717 | 0.814855 | 1.25E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene33717 | 0.87439 | 7.01E-68 | -1.69E-46 |
| MS.gene058142 | MS.gene33717 | 0.865256 | 6.74E-65 | -1.69E-46 |
| MS.gene058660 | MS.gene33717 | 0.810018 | 1.42E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene33717 | 0.830705 | 2.53E-55 | -1.69E-46 |
| MS.gene058749 | MS.gene33717 | 0.83229 | 1.03E-55 | -1.69E-46 |
| MS.gene058833 | MS.gene33717 | 0.813889 | 2.04E-51 | -1.69E-46 |
| MS.gene058845 | MS.gene33717 | 0.843577 | 1.29E-58 | -1.69E-46 |
| MS.gene05907 | MS.gene33717 | 0.843414 | 1.42E-58 | -1.69E-46 |
| MS.gene059285 | MS.gene33717 | 0.812608 | 3.89E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene33717 | 0.858389 | 8.52E-63 | -1.69E-46 |
| MS.gene059597 | MS.gene33717 | 0.820168 | 7.91E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene33717 | 0.807946 | 3.94E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene33717 | 0.805628 | 1.22E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene33717 | 0.89146 | 3.89E-74 | -1.69E-46 |
| MS.gene059894 | MS.gene33717 | 0.862264 | 5.73E-64 | -1.69E-46 |
| MS.gene059899 | MS.gene33717 | 0.828016 | 1.14E-54 | -1.69E-46 |
| MS.gene06037 | MS.gene33717 | 0.814869 | 1.24E-51 | -1.69E-46 |
| MS.gene060476 | MS.gene33717 | 0.853689 | 2.02E-61 | -1.69E-46 |
| MS.gene061049 | MS.gene33717 | 0.872995 | 2.07E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33717.t1 | MTR_4g014750 | 98.253 | 229 | 4 | 0 | 1 | 229 | 1 | 229 | 6.14e-169 | 464 |
| MS.gene33717.t1 | MTR_4g014750 | 98.214 | 168 | 3 | 0 | 1 | 168 | 1 | 168 | 1.28e-121 | 342 |
| MS.gene33717.t1 | MTR_1g052405 | 35.294 | 153 | 81 | 5 | 77 | 228 | 190 | 325 | 1.39e-18 | 83.2 |
| MS.gene33717.t1 | MTR_1g492730 | 35.294 | 153 | 83 | 5 | 77 | 228 | 165 | 302 | 1.78e-16 | 77.0 |
| MS.gene33717.t1 | MTR_1g052380 | 30.065 | 153 | 90 | 5 | 77 | 228 | 56 | 192 | 1.21e-14 | 70.9 |
| MS.gene33717.t1 | MTR_3g085620 | 29.143 | 175 | 102 | 5 | 59 | 228 | 16 | 173 | 2.38e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33717.t1 | AT2G38025 | 60.435 | 230 | 80 | 5 | 9 | 228 | 5 | 233 | 1.81e-86 | 256 |
| MS.gene33717.t1 | AT2G38025 | 67.857 | 168 | 48 | 2 | 67 | 228 | 43 | 210 | 4.60e-74 | 224 |
| MS.gene33717.t1 | AT3G57810 | 34.416 | 154 | 83 | 4 | 77 | 229 | 168 | 304 | 2.09e-21 | 90.9 |
| MS.gene33717.t1 | AT3G57810 | 34.416 | 154 | 83 | 4 | 77 | 229 | 168 | 304 | 2.09e-21 | 90.9 |
| MS.gene33717.t1 | AT3G57810 | 34.416 | 154 | 83 | 4 | 77 | 229 | 168 | 304 | 2.09e-21 | 90.9 |
Find 54 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTGGGCAACCTGATTTC+TGG | 0.156112 | 4.3:+83691503 | MS.gene33717:CDS |
| AATCGGAATTCAAGCTTATT+TGG | 0.181024 | 4.3:+83689228 | MS.gene33717:CDS |
| GTATGGAAGTGAATTTAAAA+AGG | 0.264562 | 4.3:+83692080 | MS.gene33717:CDS |
| TTCATTCCGATTGCCGAGTA+TGG | 0.298574 | 4.3:+83692063 | MS.gene33717:CDS |
| TCTGGTATGTACACAATAAT+TGG | 0.313597 | 4.3:-83691882 | None:intergenic |
| CGGTTGCTTCAGTTGTTTCT+CGG | 0.328646 | 4.3:+83689202 | MS.gene33717:CDS |
| AGAGGCGGTGGTCGGGGATC+TGG | 0.355109 | 4.3:+83692039 | MS.gene33717:CDS |
| GATTCTCCTCCCCAGAAATC+AGG | 0.356950 | 4.3:-83691514 | None:intergenic |
| GCAGTTACTGCAGGCGGATT+GGG | 0.359521 | 4.3:+83691488 | MS.gene33717:intron |
| TGCAGTTACTGCAGGCGGAT+TGG | 0.360734 | 4.3:+83691487 | MS.gene33717:intron |
| GATTGGGCAACCTGATTTCT+GGG | 0.372109 | 4.3:+83691504 | MS.gene33717:CDS |
| CAGTTGTTTCTCGGTTTAAT+CGG | 0.374617 | 4.3:+83689211 | MS.gene33717:CDS |
| CATTATGACCTTCTGTTATG+AGG | 0.384606 | 4.3:+83692147 | MS.gene33717:CDS |
| CTCATAACAGAAGGTCATAA+TGG | 0.393100 | 4.3:-83692146 | None:intergenic |
| GCAGCATAGAGGCGGTGGTC+GGG | 0.413029 | 4.3:+83692032 | MS.gene33717:intron |
| GCGGTGTCTGTTTCGTGCTC+TGG | 0.442002 | 4.3:+83690420 | MS.gene33717:CDS |
| GGGAGGAGAATCAGAACTAT+TGG | 0.442300 | 4.3:+83691525 | MS.gene33717:CDS |
| AATTCAAGCTTATTTGGTGT+TGG | 0.442709 | 4.3:+83689234 | MS.gene33717:CDS |
| ATCAACTGTGACAGCAATGA+TGG | 0.457267 | 4.3:-83691360 | None:intergenic |
| TTTAAATTCACTTCCATACT+CGG | 0.461333 | 4.3:-83692076 | None:intergenic |
| ATTCTTAAGCAGTTGAAAGA+TGG | 0.469119 | 4.3:+83689150 | MS.gene33717:CDS |
| CAGCATAGAGGCGGTGGTCG+GGG | 0.476465 | 4.3:+83692033 | MS.gene33717:intron |
| ATTTGAGATTGTTTCTTCAC+CGG | 0.479973 | 4.3:+83689182 | MS.gene33717:CDS |
| TGAAGGCATACCTCATGCTC+TGG | 0.484252 | 4.3:-83691900 | None:intergenic |
| GTTCAGAAAGTTACAGGGGA+TGG | 0.493144 | 4.3:+83690397 | MS.gene33717:CDS |
| CGAGAAACAACTGAAGCAAC+CGG | 0.497549 | 4.3:-83689201 | None:intergenic |
| TCACTTCCATACTCGGCAAT+CGG | 0.507697 | 4.3:-83692069 | None:intergenic |
| TAACACAGATGAACTAAGAA+TGG | 0.521962 | 4.3:+83691283 | MS.gene33717:intron |
| CAAAGGAATGGCTCACAACA+AGG | 0.527955 | 4.3:+83690984 | MS.gene33717:CDS |
| GAAGCTATATGTGAAAATGT+AGG | 0.546789 | 4.3:+83691314 | MS.gene33717:CDS |
| TTCAGAAAGTTACAGGGGAT+GGG | 0.550770 | 4.3:+83690398 | MS.gene33717:CDS |
| ATGAAATCAGGTCAAAGGAA+TGG | 0.557639 | 4.3:+83690972 | MS.gene33717:intron |
| GTTCAATGAAATCAGGTCAA+AGG | 0.558258 | 4.3:+83690967 | MS.gene33717:intron |
| TGCAGCATAGAGGCGGTGGT+CGG | 0.570182 | 4.3:+83692031 | MS.gene33717:intron |
| ACCGCTGAACAATAGCCTCA+CGG | 0.579908 | 4.3:-83692118 | None:intergenic |
| GGGCAACCTGATTTCTGGGG+AGG | 0.583375 | 4.3:+83691508 | MS.gene33717:CDS |
| AATGGCTCACAACAAGGGAA+TGG | 0.600900 | 4.3:+83690990 | MS.gene33717:CDS |
| AAAATGCAGCATAGAGGCGG+TGG | 0.608132 | 4.3:+83692027 | MS.gene33717:intron |
| TTTCAGTTCAGAAAGTTACA+GGG | 0.613627 | 4.3:+83690392 | MS.gene33717:CDS |
| TTTGCTGCAGTTACTGCAGG+CGG | 0.617614 | 4.3:+83691482 | MS.gene33717:intron |
| TCTAAAACACACCGTTGCAG+AGG | 0.622955 | 4.3:-83691386 | None:intergenic |
| ATACAATTCCTCATAACAGA+AGG | 0.623406 | 4.3:-83692155 | None:intergenic |
| CGCGAGGAGAGAGAAAATGC+AGG | 0.629042 | 4.3:+83691024 | MS.gene33717:CDS |
| TTCAGTTCAGAAAGTTACAG+GGG | 0.629669 | 4.3:+83690393 | MS.gene33717:CDS |
| TGTGTACATACCAGAGCATG+AGG | 0.636499 | 4.3:+83691890 | MS.gene33717:CDS |
| CAGTTGATGAGCCTCTGCAA+CGG | 0.648167 | 4.3:+83691375 | MS.gene33717:CDS |
| ATTGGGCAACCTGATTTCTG+GGG | 0.653227 | 4.3:+83691505 | MS.gene33717:CDS |
| AAAGGAATGGCTCACAACAA+GGG | 0.664021 | 4.3:+83690985 | MS.gene33717:CDS |
| ATGGCGCAAAAGCTTCTCAA+CGG | 0.671372 | 4.3:+83689019 | MS.gene33717:CDS |
| AGAAAGTTACAGGGGATGGG+CGG | 0.674418 | 4.3:+83690401 | MS.gene33717:CDS |
| ATTTGAATCCTCAGACTCGG+AGG | 0.683433 | 4.3:+83689116 | MS.gene33717:intron |
| GCCGTGAGGCTATTGTTCAG+CGG | 0.691179 | 4.3:+83692117 | MS.gene33717:CDS |
| AATGGCTCTTAACCAACGCG+AGG | 0.698050 | 4.3:+83691008 | MS.gene33717:CDS |
| GTTCTAGCAGAAAAGCCGTG+AGG | 0.781947 | 4.3:+83692103 | MS.gene33717:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAAAAAAAATAT+AGG | - | chr4.3:83691192-83691211 | None:intergenic | 0.0% |
| !! | AAAGATAAAAATTGATAAAA+AGG | - | chr4.3:83690534-83690553 | None:intergenic | 10.0% |
| !! | TCAATAAAATATAATCAAAA+AGG | - | chr4.3:83690001-83690020 | None:intergenic | 10.0% |
| !!! | TATCTAACTAATATTTTATA+AGG | + | chr4.3:83691952-83691971 | MS.gene33717:intron | 10.0% |
| !!! | ACTAAATAGATTTTCTTATT+TGG | + | chr4.3:83691598-83691617 | MS.gene33717:intron | 15.0% |
| !!! | GTTTTTCAAATTAATTTTAG+AGG | + | chr4.3:83690928-83690947 | MS.gene33717:intron | 15.0% |
| !!! | TATCTTCTATTAGTTTTTTA+TGG | - | chr4.3:83689895-83689914 | None:intergenic | 15.0% |
| !!! | TTTATTACTTTCACTTTTTT+GGG | + | chr4.3:83689330-83689349 | MS.gene33717:intron | 15.0% |
| !! | AAAATGAAAACAAAGTGAAT+GGG | - | chr4.3:83691236-83691255 | None:intergenic | 20.0% |
| !! | AATTTAACAAACAAAATTCC+AGG | - | chr4.3:83690074-83690093 | None:intergenic | 20.0% |
| !! | ATTAGCAGTGTTAAAAAATT+AGG | - | chr4.3:83689084-83689103 | None:intergenic | 20.0% |
| !! | ATTTAACAAACAAAATTCCA+GGG | - | chr4.3:83690073-83690092 | None:intergenic | 20.0% |
| !! | GTGAAAAAAATCTATAACAA+AGG | - | chr4.3:83690464-83690483 | None:intergenic | 20.0% |
| !! | TATGGAAGTGAATTTAAAAA+GGG | + | chr4.3:83692081-83692100 | MS.gene33717:CDS | 20.0% |
| !! | TTAGCAGTGTTAAAAAATTA+GGG | - | chr4.3:83689083-83689102 | None:intergenic | 20.0% |
| !! | TTTCATGAATTTATCCTTAT+GGG | + | chr4.3:83690093-83690112 | MS.gene33717:intron | 20.0% |
| !! | TTTGATATATTTAGAGACAA+TGG | + | chr4.3:83689928-83689947 | MS.gene33717:intron | 20.0% |
| !! | TTTGCATTAATGTGTAATTA+GGG | + | chr4.3:83689391-83689410 | MS.gene33717:intron | 20.0% |
| !! | TTTGTATTTAATGCAATGAT+TGG | + | chr4.3:83691450-83691469 | MS.gene33717:intron | 20.0% |
| !!! | AAACTAAGTATTGTTTTTGA+AGG | - | chr4.3:83691920-83691939 | None:intergenic | 20.0% |
| !!! | AAATTAATTTTAGAGGTAAG+CGG | + | chr4.3:83690935-83690954 | MS.gene33717:intron | 20.0% |
| !!! | AATTTGAACTCTTTTCTTAA+TGG | + | chr4.3:83690275-83690294 | MS.gene33717:intron | 20.0% |
| !!! | AGATCTTAATTTTCTGTTAA+TGG | - | chr4.3:83691414-83691433 | None:intergenic | 20.0% |
| !!! | ATATTTTATTGATCCTTTGT+TGG | + | chr4.3:83690009-83690028 | MS.gene33717:intron | 20.0% |
| !!! | CAATACTTAGTTTTATCATT+TGG | + | chr4.3:83691927-83691946 | MS.gene33717:intron | 20.0% |
| !!! | CTTTATTACTTTCACTTTTT+TGG | + | chr4.3:83689329-83689348 | MS.gene33717:intron | 20.0% |
| !!! | TATTTTATTGATCCTTTGTT+GGG | + | chr4.3:83690010-83690029 | MS.gene33717:intron | 20.0% |
| !!! | TTACATATAGCAGATTTTTA+TGG | - | chr4.3:83690862-83690881 | None:intergenic | 20.0% |
| !!! | TTTTCATGAATTTATCCTTA+TGG | + | chr4.3:83690092-83690111 | MS.gene33717:intron | 20.0% |
| ! | AAAGTGAATGGGAAAAATAA+AGG | - | chr4.3:83691225-83691244 | None:intergenic | 25.0% |
| ! | AACAGAAAATTAAGATCTTG+AGG | + | chr4.3:83691416-83691435 | MS.gene33717:intron | 25.0% |
| ! | AACTGAACTTATATATTGCT+AGG | - | chr4.3:83690776-83690795 | None:intergenic | 25.0% |
| ! | AACTTAAGCTATAAAAGACA+TGG | + | chr4.3:83690735-83690754 | MS.gene33717:intron | 25.0% |
| ! | AGAAAATCTATTTAGTCCTT+AGG | - | chr4.3:83691594-83691613 | None:intergenic | 25.0% |
| ! | ATCAATGTCCATATTCTTTA+AGG | + | chr4.3:83691836-83691855 | MS.gene33717:intron | 25.0% |
| ! | CTAATTACACATTAATGCAA+AGG | - | chr4.3:83689392-83689411 | None:intergenic | 25.0% |
| ! | CTTTGCATTAATGTGTAATT+AGG | + | chr4.3:83689390-83689409 | MS.gene33717:intron | 25.0% |
| ! | GAAAATGAAAACAAAGTGAA+TGG | - | chr4.3:83691237-83691256 | None:intergenic | 25.0% |
| ! | GTATGGAAGTGAATTTAAAA+AGG | + | chr4.3:83692080-83692099 | MS.gene33717:CDS | 25.0% |
| ! | TAACAAAACCAACTAAAGAA+TGG | - | chr4.3:83689843-83689862 | None:intergenic | 25.0% |
| ! | TGAAAGCAAAACAAACAAAA+GGG | - | chr4.3:83691088-83691107 | None:intergenic | 25.0% |
| ! | TTCATGAATTTATCCTTATG+GGG | + | chr4.3:83690094-83690113 | MS.gene33717:intron | 25.0% |
| ! | TTTAAATTCACTTCCATACT+CGG | - | chr4.3:83692079-83692098 | None:intergenic | 25.0% |
| ! | TTTAACAAACAAAATTCCAG+GGG | - | chr4.3:83690072-83690091 | None:intergenic | 25.0% |
| !! | ATTGTCTTTTCTGCTAAAAA+AGG | + | chr4.3:83690230-83690249 | MS.gene33717:intron | 25.0% |
| !! | TGTTGAATATAAGCCTTTTA+AGG | + | chr4.3:83690146-83690165 | MS.gene33717:intron | 25.0% |
| !! | TTTTCTTTCCTTTCCTTAAA+AGG | - | chr4.3:83690162-83690181 | None:intergenic | 25.0% |
| !!! | AAAGGTATCTTCATCAATAA+TGG | + | chr4.3:83690248-83690267 | MS.gene33717:intron | 25.0% |
| !!! | AATATAAGCCTTTTAAGGAA+AGG | + | chr4.3:83690151-83690170 | MS.gene33717:intron | 25.0% |
| !!! | GGATTTTAGAATTACAGATT+TGG | + | chr4.3:83690116-83690135 | MS.gene33717:intron | 25.0% |
| !!! | TTTTTATGGACTGACATATT+TGG | - | chr4.3:83690848-83690867 | None:intergenic | 25.0% |
| AAACTAAAAATGCAGCATAG+AGG | + | chr4.3:83692021-83692040 | MS.gene33717:intron | 30.0% | |
| AATCGGAATTCAAGCTTATT+TGG | + | chr4.3:83689228-83689247 | MS.gene33717:CDS | 30.0% | |
| ACGAAGAATTGTGAAACTAA+AGG | - | chr4.3:83689700-83689719 | None:intergenic | 30.0% | |
| AGAATATGCCATTCTTTAGT+TGG | + | chr4.3:83689832-83689851 | MS.gene33717:intron | 30.0% | |
| ATTCTTAAGCAGTTGAAAGA+TGG | + | chr4.3:83689150-83689169 | MS.gene33717:CDS | 30.0% | |
| CACAAAAAACATTGTCAAGT+AGG | + | chr4.3:83690686-83690705 | MS.gene33717:intron | 30.0% | |
| CTGAAAGCAAAACAAACAAA+AGG | - | chr4.3:83691089-83691108 | None:intergenic | 30.0% | |
| CTTCAATCCAATTGATGTAT+CGG | + | chr4.3:83690817-83690836 | MS.gene33717:intron | 30.0% | |
| GAAAGCAAAACAAACAAAAG+GGG | - | chr4.3:83691087-83691106 | None:intergenic | 30.0% | |
| GAAGCTATATGTGAAAATGT+AGG | + | chr4.3:83691314-83691333 | MS.gene33717:CDS | 30.0% | |
| GATAAACTAGCAATAAGACA+TGG | + | chr4.3:83691053-83691072 | MS.gene33717:intron | 30.0% | |
| GCTGAAAAAGAAAACTATCT+TGG | - | chr4.3:83689530-83689549 | None:intergenic | 30.0% | |
| TAAACAACCATTGTAGTACT+TGG | + | chr4.3:83689744-83689763 | MS.gene33717:intron | 30.0% | |
| TAACACAGATGAACTAAGAA+TGG | + | chr4.3:83691283-83691302 | MS.gene33717:intron | 30.0% | |
| TAATTAGGGTCTCTTTGAAT+TGG | + | chr4.3:83689405-83689424 | MS.gene33717:intron | 30.0% | |
| TACAATGGTTGTTTACTCTA+AGG | - | chr4.3:83689739-83689758 | None:intergenic | 30.0% | |
| TACATCAATTGGATTGAAGA+CGG | - | chr4.3:83690816-83690835 | None:intergenic | 30.0% | |
| TAGTTCATCTGTGTTATCAT+GGG | - | chr4.3:83691279-83691298 | None:intergenic | 30.0% | |
| TATAACAAAGGCAATGAAGA+TGG | - | chr4.3:83690452-83690471 | None:intergenic | 30.0% | |
| TCATGAATTTATCCTTATGG+GGG | + | chr4.3:83690095-83690114 | MS.gene33717:intron | 30.0% | |
| TCTGGTATGTACACAATAAT+TGG | - | chr4.3:83691885-83691904 | None:intergenic | 30.0% | |
| TGACAGTACCTTAAAGAATA+TGG | - | chr4.3:83691847-83691866 | None:intergenic | 30.0% | |
| TTAGTTCATCTGTGTTATCA+TGG | - | chr4.3:83691280-83691299 | None:intergenic | 30.0% | |
| TTTCAGTTCAGAAAGTTACA+GGG | + | chr4.3:83690392-83690411 | MS.gene33717:CDS | 30.0% | |
| ! | AGACTTTATTTACAAGCTTC+TGG | + | chr4.3:83690610-83690629 | MS.gene33717:intron | 30.0% |
| ! | ATTTGAGATTGTTTCTTCAC+CGG | + | chr4.3:83689182-83689201 | MS.gene33717:CDS | 30.0% |
| ! | GCAAGATGTTTCTGATATTT+AGG | + | chr4.3:83690183-83690202 | MS.gene33717:intron | 30.0% |
| ! | TTTTCAGTTCAGAAAGTTAC+AGG | + | chr4.3:83690391-83690410 | MS.gene33717:CDS | 30.0% |
| !! | AATTCAAGCTTATTTGGTGT+TGG | + | chr4.3:83689234-83689253 | MS.gene33717:CDS | 30.0% |
| !! | TAATTCTAAAATCCCCCATA+AGG | - | chr4.3:83690110-83690129 | None:intergenic | 30.0% |
| !!! | AGTTTTATCTGTTGACTCAT+TGG | - | chr4.3:83691706-83691725 | None:intergenic | 30.0% |
| !!! | CTACTTGACAATGTTTTTTG+TGG | - | chr4.3:83690688-83690707 | None:intergenic | 30.0% |
| !!! | GTTTGTTTTGCTTTCAGTTA+AGG | + | chr4.3:83691092-83691111 | MS.gene33717:intron | 30.0% |
| !!! | GTTTTATCTGTTGACTCATT+GGG | - | chr4.3:83691705-83691724 | None:intergenic | 30.0% |
| AAAGTCTAACCCTAGAATCA+AGG | - | chr4.3:83690597-83690616 | None:intergenic | 35.0% | |
| AACACATCCAAGTACTACAA+TGG | - | chr4.3:83689754-83689773 | None:intergenic | 35.0% | |
| ACTAAATTGATCCACGTAAG+AGG | - | chr4.3:83689809-83689828 | None:intergenic | 35.0% | |
| AGATTCCTTTCTACAGCAAA+AGG | - | chr4.3:83689666-83689685 | None:intergenic | 35.0% | |
| ATGAAATCAGGTCAAAGGAA+TGG | + | chr4.3:83690972-83690991 | MS.gene33717:intron | 35.0% | |
| ATGTGTTGTGTACTTGTGTT+TGG | + | chr4.3:83690310-83690329 | MS.gene33717:intron | 35.0% | |
| ATTCCAGGGGTAATAATTTG+AGG | - | chr4.3:83690059-83690078 | None:intergenic | 35.0% | |
| ATTCGGCTACAAAACTGAAA+AGG | - | chr4.3:83690486-83690505 | None:intergenic | 35.0% | |
| ATTGAACTGCCTTGATTCTA+GGG | + | chr4.3:83690585-83690604 | MS.gene33717:intron | 35.0% | |
| GCTTATTTGAGCTTATCTAC+TGG | + | chr4.3:83689427-83689446 | MS.gene33717:intron | 35.0% | |
| GTGACACAATTCACACATTA+AGG | + | chr4.3:83689950-83689969 | MS.gene33717:intron | 35.0% | |
| GTTCAATGAAATCAGGTCAA+AGG | + | chr4.3:83690967-83690986 | MS.gene33717:intron | 35.0% | |
| TATTGAACTGCCTTGATTCT+AGG | + | chr4.3:83690584-83690603 | MS.gene33717:intron | 35.0% | |
| TCCTTTGTTGGGAAAGAAAA+TGG | + | chr4.3:83690021-83690040 | MS.gene33717:intron | 35.0% | |
| TTACCTCAAATTATTACCCC+TGG | + | chr4.3:83690053-83690072 | MS.gene33717:intron | 35.0% | |
| TTCAGTTCAGAAAGTTACAG+GGG | + | chr4.3:83690393-83690412 | MS.gene33717:CDS | 35.0% | |
| TTGTAGTACTTGGATGTGTT+AGG | + | chr4.3:83689754-83689773 | MS.gene33717:intron | 35.0% | |
| ! | ACAGTTGGTTCAATGAAATC+AGG | + | chr4.3:83690960-83690979 | MS.gene33717:intron | 35.0% |
| ! | ACCATTTTCTTTCCCAACAA+AGG | - | chr4.3:83690025-83690044 | None:intergenic | 35.0% |
| ! | AGCGTGTATATGTAGTTTTC+CGG | + | chr4.3:83691137-83691156 | MS.gene33717:intron | 35.0% |
| ! | GGCATAAGTTTTACGATGAT+TGG | + | chr4.3:83689448-83689467 | MS.gene33717:intron | 35.0% |
| !! | AGACGGATTATGTCATTAGA+TGG | - | chr4.3:83690799-83690818 | None:intergenic | 35.0% |
| !! | CAGTTGTTTCTCGGTTTAAT+CGG | + | chr4.3:83689211-83689230 | MS.gene33717:CDS | 35.0% |
| !!! | ACTCACTTTTTCGCTAGAAT+TGG | + | chr4.3:83689267-83689286 | MS.gene33717:CDS | 35.0% |
| AAAAGGAACTCACTCGTGTT+TGG | - | chr4.3:83689649-83689668 | None:intergenic | 40.0% | |
| AAAGGAATGGCTCACAACAA+GGG | + | chr4.3:83690985-83691004 | MS.gene33717:CDS | 40.0% | |
| AGAAAGGAATCTTTCACACG+AGG | + | chr4.3:83689674-83689693 | MS.gene33717:intron | 40.0% | |
| ATCAACTGTGACAGCAATGA+TGG | - | chr4.3:83691363-83691382 | None:intergenic | 40.0% | |
| ATCATTGAATGCCTCTTACG+TGG | + | chr4.3:83689795-83689814 | MS.gene33717:intron | 40.0% | |
| CTAAAAATGCAGCATAGAGG+CGG | + | chr4.3:83692024-83692043 | MS.gene33717:intron | 40.0% | |
| GACATTTGAATCCTCAGACT+CGG | + | chr4.3:83689113-83689132 | MS.gene33717:intron | 40.0% | |
| GAGGAAGCTCAAACTAATGA+AGG | - | chr4.3:83690895-83690914 | None:intergenic | 40.0% | |
| GCTCAAACTAATGAAGGACT+TGG | - | chr4.3:83690889-83690908 | None:intergenic | 40.0% | |
| GCTTGCATATTTGTCTCCTA+AGG | + | chr4.3:83691575-83691594 | MS.gene33717:intron | 40.0% | |
| GGACTAAAATGACCAGTACT+CGG | + | chr4.3:83689971-83689990 | MS.gene33717:intron | 40.0% | |
| TCTCAGCTCAATAGTTGAAC+CGG | - | chr4.3:83691159-83691178 | None:intergenic | 40.0% | |
| TTCAGAAAGTTACAGGGGAT+GGG | + | chr4.3:83690398-83690417 | MS.gene33717:CDS | 40.0% | |
| TTGAAAAACTCGCTTCGCTA+TGG | - | chr4.3:83690917-83690936 | None:intergenic | 40.0% | |
| ! | TATTTTGCTGCAGTTACTGC+AGG | + | chr4.3:83691479-83691498 | MS.gene33717:intron | 40.0% |
| !! | GAGTTCCTTTTGCTGTAGAA+AGG | + | chr4.3:83689658-83689677 | MS.gene33717:intron | 40.0% |
| !! | TTCAGTTTTGTAGCCGAATG+CGG | + | chr4.3:83690487-83690506 | MS.gene33717:intron | 40.0% |
| AAAAACTCGCTTCGCTATGG+AGG | - | chr4.3:83690914-83690933 | None:intergenic | 45.0% | |
| AATGGCTCACAACAAGGGAA+TGG | + | chr4.3:83690990-83691009 | MS.gene33717:CDS | 45.0% | |
| AGGAGACAAATATGCAAGCG+TGG | - | chr4.3:83691574-83691593 | None:intergenic | 45.0% | |
| ATGGCGCAAAAGCTTCTCAA+CGG | + | chr4.3:83689019-83689038 | MS.gene33717:CDS | 45.0% | |
| ATTGGGCAACCTGATTTCTG+GGG | + | chr4.3:83691505-83691524 | MS.gene33717:CDS | 45.0% | |
| ATTTGAATCCTCAGACTCGG+AGG | + | chr4.3:83689116-83689135 | MS.gene33717:intron | 45.0% | |
| CAAAAAGGATAGCCGAGTAC+TGG | - | chr4.3:83689986-83690005 | None:intergenic | 45.0% | |
| CAAAGGAATGGCTCACAACA+AGG | + | chr4.3:83690984-83691003 | MS.gene33717:CDS | 45.0% | |
| CACTGTGAGAACATAAGGAG+AGG | - | chr4.3:83690336-83690355 | None:intergenic | 45.0% | |
| CGAGAAACAACTGAAGCAAC+CGG | - | chr4.3:83689204-83689223 | None:intergenic | 45.0% | |
| CTCTCCTTATGTTCTCACAG+TGG | + | chr4.3:83690334-83690353 | MS.gene33717:intron | 45.0% | |
| GATTGGGCAACCTGATTTCT+GGG | + | chr4.3:83691504-83691523 | MS.gene33717:CDS | 45.0% | |
| GGGAGGAGAATCAGAACTAT+TGG | + | chr4.3:83691525-83691544 | MS.gene33717:CDS | 45.0% | |
| GGTGAGACCGATACATCAAT+TGG | - | chr4.3:83690827-83690846 | None:intergenic | 45.0% | |
| GTTCAGAAAGTTACAGGGGA+TGG | + | chr4.3:83690397-83690416 | MS.gene33717:CDS | 45.0% | |
| TCACTTCCATACTCGGCAAT+CGG | - | chr4.3:83692072-83692091 | None:intergenic | 45.0% | |
| TCCACCACTGTGAGAACATA+AGG | - | chr4.3:83690341-83690360 | None:intergenic | 45.0% | |
| TCCTTATGTTCTCACAGTGG+TGG | + | chr4.3:83690337-83690356 | MS.gene33717:intron | 45.0% | |
| TGTGTACATACCAGAGCATG+AGG | + | chr4.3:83691890-83691909 | MS.gene33717:CDS | 45.0% | |
| TTCATTCCGATTGCCGAGTA+TGG | + | chr4.3:83692063-83692082 | MS.gene33717:CDS | 45.0% | |
| ! | TCTAAAACACACCGTTGCAG+AGG | - | chr4.3:83691389-83691408 | None:intergenic | 45.0% |
| !! | CGGTTGCTTCAGTTGTTTCT+CGG | + | chr4.3:83689202-83689221 | MS.gene33717:CDS | 45.0% |
| !! | TCAGTTTTGTAGCCGAATGC+GGG | + | chr4.3:83690488-83690507 | MS.gene33717:intron | 45.0% |
| AAAATGCAGCATAGAGGCGG+TGG | + | chr4.3:83692027-83692046 | MS.gene33717:intron | 50.0% | |
| AATGGCTCTTAACCAACGCG+AGG | + | chr4.3:83691008-83691027 | MS.gene33717:CDS | 50.0% | |
| ACCGCTGAACAATAGCCTCA+CGG | - | chr4.3:83692121-83692140 | None:intergenic | 50.0% | |
| AGAAAGTTACAGGGGATGGG+CGG | + | chr4.3:83690401-83690420 | MS.gene33717:CDS | 50.0% | |
| ATCATCATCCTCCGAGTCTG+AGG | - | chr4.3:83689127-83689146 | None:intergenic | 50.0% | |
| ATCCAATCAGCACCCGCATT+CGG | - | chr4.3:83690503-83690522 | None:intergenic | 50.0% | |
| GATTCTCCTCCCCAGAAATC+AGG | - | chr4.3:83691517-83691536 | None:intergenic | 50.0% | |
| GGATTGGGCAACCTGATTTC+TGG | + | chr4.3:83691503-83691522 | MS.gene33717:CDS | 50.0% | |
| GTTCTAGCAGAAAAGCCGTG+AGG | + | chr4.3:83692103-83692122 | MS.gene33717:CDS | 50.0% | |
| TAGAGGTAAGCGGTGACAGT+TGG | + | chr4.3:83690945-83690964 | MS.gene33717:intron | 50.0% | |
| TTTGCTGCAGTTACTGCAGG+CGG | + | chr4.3:83691482-83691501 | MS.gene33717:intron | 50.0% | |
| ! | CATTTTCTCTCTCCTCGCGT+TGG | - | chr4.3:83691023-83691042 | None:intergenic | 50.0% |
| ! | TGAAGGCATACCTCATGCTC+TGG | - | chr4.3:83691903-83691922 | None:intergenic | 50.0% |
| !! | CAGTTGATGAGCCTCTGCAA+CGG | + | chr4.3:83691375-83691394 | MS.gene33717:CDS | 50.0% |
| CGCGAGGAGAGAGAAAATGC+AGG | + | chr4.3:83691024-83691043 | MS.gene33717:CDS | 55.0% | |
| GCCGTGAGGCTATTGTTCAG+CGG | + | chr4.3:83692117-83692136 | MS.gene33717:CDS | 55.0% | |
| TGCAGTTACTGCAGGCGGAT+TGG | + | chr4.3:83691487-83691506 | MS.gene33717:intron | 55.0% | |
| ! | GCAGTTACTGCAGGCGGATT+GGG | + | chr4.3:83691488-83691507 | MS.gene33717:intron | 55.0% |
| GCGGTGTCTGTTTCGTGCTC+TGG | + | chr4.3:83690420-83690439 | MS.gene33717:CDS | 60.0% | |
| TGCAGCATAGAGGCGGTGGT+CGG | + | chr4.3:83692031-83692050 | MS.gene33717:intron | 60.0% | |
| ! | GGGCAACCTGATTTCTGGGG+AGG | + | chr4.3:83691508-83691527 | MS.gene33717:CDS | 60.0% |
| !! | AGCCGAATGCGGGTGCTGAT+TGG | + | chr4.3:83690498-83690517 | MS.gene33717:intron | 60.0% |
| CAGCATAGAGGCGGTGGTCG+GGG | + | chr4.3:83692033-83692052 | MS.gene33717:intron | 65.0% | |
| GCAGCATAGAGGCGGTGGTC+GGG | + | chr4.3:83692032-83692051 | MS.gene33717:intron | 65.0% | |
| AGAGGCGGTGGTCGGGGATC+TGG | + | chr4.3:83692039-83692058 | MS.gene33717:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 83689019 | 83692167 | 83689019 | ID=MS.gene33717 |
| chr4.3 | mRNA | 83689019 | 83692167 | 83689019 | ID=MS.gene33717.t1;Parent=MS.gene33717 |
| chr4.3 | exon | 83689019 | 83689040 | 83689019 | ID=MS.gene33717.t1.exon1;Parent=MS.gene33717.t1 |
| chr4.3 | CDS | 83689019 | 83689040 | 83689019 | ID=cds.MS.gene33717.t1;Parent=MS.gene33717.t1 |
| chr4.3 | exon | 83689130 | 83689298 | 83689130 | ID=MS.gene33717.t1.exon2;Parent=MS.gene33717.t1 |
| chr4.3 | CDS | 83689130 | 83689298 | 83689130 | ID=cds.MS.gene33717.t1;Parent=MS.gene33717.t1 |
| chr4.3 | exon | 83690354 | 83690441 | 83690354 | ID=MS.gene33717.t1.exon3;Parent=MS.gene33717.t1 |
| chr4.3 | CDS | 83690354 | 83690441 | 83690354 | ID=cds.MS.gene33717.t1;Parent=MS.gene33717.t1 |
| chr4.3 | exon | 83690982 | 83691045 | 83690982 | ID=MS.gene33717.t1.exon4;Parent=MS.gene33717.t1 |
| chr4.3 | CDS | 83690982 | 83691045 | 83690982 | ID=cds.MS.gene33717.t1;Parent=MS.gene33717.t1 |
| chr4.3 | exon | 83691291 | 83691396 | 83691291 | ID=MS.gene33717.t1.exon5;Parent=MS.gene33717.t1 |
| chr4.3 | CDS | 83691291 | 83691396 | 83691291 | ID=cds.MS.gene33717.t1;Parent=MS.gene33717.t1 |
| chr4.3 | exon | 83691492 | 83691546 | 83691492 | ID=MS.gene33717.t1.exon6;Parent=MS.gene33717.t1 |
| chr4.3 | CDS | 83691492 | 83691546 | 83691492 | ID=cds.MS.gene33717.t1;Parent=MS.gene33717.t1 |
| chr4.3 | exon | 83691858 | 83691911 | 83691858 | ID=MS.gene33717.t1.exon7;Parent=MS.gene33717.t1 |
| chr4.3 | CDS | 83691858 | 83691911 | 83691858 | ID=cds.MS.gene33717.t1;Parent=MS.gene33717.t1 |
| chr4.3 | exon | 83692036 | 83692167 | 83692036 | ID=MS.gene33717.t1.exon8;Parent=MS.gene33717.t1 |
| chr4.3 | CDS | 83692036 | 83692167 | 83692036 | ID=cds.MS.gene33717.t1;Parent=MS.gene33717.t1 |
| Gene Sequence |
| Protein sequence |
