Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35640.t1 | XP_003601139.1 | 94.4 | 233 | 13 | 0 | 41 | 273 | 72 | 304 | 1.30E-112 | 416 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35640.t1 | A2BNE2 | 44.5 | 155 | 86 | 0 | 99 | 253 | 62 | 216 | 4.6e-29 | 129.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35640.t1 | G7J465 | 94.4 | 233 | 13 | 0 | 41 | 273 | 72 | 304 | 9.7e-113 | 416.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene35640 | 0.817969 | 2.50E-52 | -1.69E-46 |
MS.gene049222 | MS.gene35640 | 0.817883 | 2.62E-52 | -1.69E-46 |
MS.gene049285 | MS.gene35640 | 0.841359 | 4.99E-58 | -1.69E-46 |
MS.gene049320 | MS.gene35640 | 0.80827 | 3.36E-50 | -1.69E-46 |
MS.gene049609 | MS.gene35640 | 0.821192 | 4.60E-53 | -1.69E-46 |
MS.gene05010 | MS.gene35640 | 0.810981 | 8.79E-51 | -1.69E-46 |
MS.gene050163 | MS.gene35640 | 0.802234 | 6.18E-49 | -1.69E-46 |
MS.gene050333 | MS.gene35640 | 0.827689 | 1.36E-54 | -1.69E-46 |
MS.gene050504 | MS.gene35640 | 0.80734 | 5.30E-50 | -1.69E-46 |
MS.gene050518 | MS.gene35640 | 0.800371 | 1.49E-48 | -1.69E-46 |
MS.gene050538 | MS.gene35640 | 0.814647 | 1.38E-51 | -1.69E-46 |
MS.gene050593 | MS.gene35640 | 0.837249 | 5.81E-57 | -1.69E-46 |
MS.gene050747 | MS.gene35640 | 0.82181 | 3.31E-53 | -1.69E-46 |
MS.gene050767 | MS.gene35640 | 0.807216 | 5.63E-50 | -1.69E-46 |
MS.gene050770 | MS.gene35640 | 0.810668 | 1.03E-50 | -1.69E-46 |
MS.gene050772 | MS.gene35640 | 0.845296 | 4.44E-59 | -1.69E-46 |
MS.gene050950 | MS.gene35640 | 0.828884 | 7.01E-55 | -1.69E-46 |
MS.gene051228 | MS.gene35640 | 0.817925 | 2.56E-52 | -1.69E-46 |
MS.gene051387 | MS.gene35640 | 0.817423 | 3.32E-52 | -1.69E-46 |
MS.gene051434 | MS.gene35640 | 0.809592 | 1.75E-50 | -1.69E-46 |
MS.gene051694 | MS.gene35640 | 0.802129 | 6.49E-49 | -1.69E-46 |
MS.gene052271 | MS.gene35640 | 0.805223 | 1.48E-49 | -1.69E-46 |
MS.gene052379 | MS.gene35640 | 0.808627 | 2.82E-50 | -1.69E-46 |
MS.gene052870 | MS.gene35640 | 0.819071 | 1.41E-52 | -1.69E-46 |
MS.gene052872 | MS.gene35640 | 0.811773 | 5.92E-51 | -1.69E-46 |
MS.gene052966 | MS.gene35640 | 0.801107 | 1.05E-48 | -1.69E-46 |
MS.gene053104 | MS.gene35640 | 0.834115 | 3.61E-56 | -1.69E-46 |
MS.gene053107 | MS.gene35640 | 0.813749 | 2.19E-51 | -1.69E-46 |
MS.gene053203 | MS.gene35640 | 0.801749 | 7.77E-49 | -1.69E-46 |
MS.gene053207 | MS.gene35640 | 0.83221 | 1.08E-55 | -1.69E-46 |
MS.gene053213 | MS.gene35640 | 0.839725 | 1.33E-57 | -1.69E-46 |
MS.gene053286 | MS.gene35640 | 0.834954 | 2.22E-56 | -1.69E-46 |
MS.gene053322 | MS.gene35640 | 0.824496 | 7.82E-54 | -1.69E-46 |
MS.gene053574 | MS.gene35640 | 0.823802 | 1.14E-53 | -1.69E-46 |
MS.gene054600 | MS.gene35640 | 0.813856 | 2.07E-51 | -1.69E-46 |
MS.gene054642 | MS.gene35640 | 0.845889 | 3.06E-59 | -1.69E-46 |
MS.gene054954 | MS.gene35640 | 0.80436 | 2.24E-49 | -1.69E-46 |
MS.gene055224 | MS.gene35640 | 0.816884 | 4.39E-52 | -1.69E-46 |
MS.gene055362 | MS.gene35640 | 0.81593 | 7.18E-52 | -1.69E-46 |
MS.gene055502 | MS.gene35640 | 0.817699 | 2.88E-52 | -1.69E-46 |
MS.gene055577 | MS.gene35640 | 0.821286 | 4.38E-53 | -1.69E-46 |
MS.gene055636 | MS.gene35640 | 0.833602 | 4.85E-56 | -1.69E-46 |
MS.gene055638 | MS.gene35640 | 0.807797 | 4.24E-50 | -1.69E-46 |
MS.gene055647 | MS.gene35640 | 0.820939 | 5.26E-53 | -1.69E-46 |
MS.gene055722 | MS.gene35640 | 0.815943 | 7.13E-52 | -1.69E-46 |
MS.gene05592 | MS.gene35640 | 0.838502 | 2.77E-57 | -1.69E-46 |
MS.gene056083 | MS.gene35640 | 0.815845 | 7.50E-52 | -1.69E-46 |
MS.gene056374 | MS.gene35640 | 0.818223 | 2.19E-52 | -1.69E-46 |
MS.gene056657 | MS.gene35640 | 0.81278 | 3.57E-51 | -1.69E-46 |
MS.gene056692 | MS.gene35640 | 0.814115 | 1.82E-51 | -1.69E-46 |
MS.gene056897 | MS.gene35640 | 0.8204 | 7.00E-53 | -1.69E-46 |
MS.gene056898 | MS.gene35640 | 0.800944 | 1.14E-48 | -1.69E-46 |
MS.gene057011 | MS.gene35640 | 0.812616 | 3.88E-51 | -1.69E-46 |
MS.gene057129 | MS.gene35640 | 0.807848 | 4.14E-50 | -1.69E-46 |
MS.gene057331 | MS.gene35640 | 0.870536 | 1.36E-66 | -1.69E-46 |
MS.gene057416 | MS.gene35640 | 0.85068 | 1.45E-60 | -1.69E-46 |
MS.gene058323 | MS.gene35640 | 0.849044 | 4.16E-60 | -1.69E-46 |
MS.gene05837 | MS.gene35640 | 0.814813 | 1.27E-51 | -1.69E-46 |
MS.gene058419 | MS.gene35640 | 0.808789 | 2.61E-50 | -1.69E-46 |
MS.gene058544 | MS.gene35640 | 0.819886 | 9.18E-53 | -1.69E-46 |
MS.gene058773 | MS.gene35640 | 0.85451 | 1.17E-61 | -1.69E-46 |
MS.gene059022 | MS.gene35640 | 0.821719 | 3.48E-53 | -1.69E-46 |
MS.gene059023 | MS.gene35640 | 0.820175 | 7.88E-53 | -1.69E-46 |
MS.gene059029 | MS.gene35640 | 0.825345 | 4.93E-54 | -1.69E-46 |
MS.gene059181 | MS.gene35640 | 0.817905 | 2.59E-52 | -1.69E-46 |
MS.gene059536 | MS.gene35640 | 0.816667 | 4.91E-52 | -1.69E-46 |
MS.gene059677 | MS.gene35640 | 0.814121 | 1.81E-51 | -1.69E-46 |
MS.gene059718 | MS.gene35640 | 0.821737 | 3.44E-53 | -1.69E-46 |
MS.gene059960 | MS.gene35640 | 0.817236 | 3.66E-52 | -1.69E-46 |
MS.gene060804 | MS.gene35640 | 0.82018 | 7.86E-53 | -1.69E-46 |
MS.gene06092 | MS.gene35640 | 0.844665 | 6.57E-59 | -1.69E-46 |
MS.gene061150 | MS.gene35640 | 0.834318 | 3.21E-56 | -1.69E-46 |
MS.gene061200 | MS.gene35640 | 0.817947 | 2.53E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35640.t1 | MTR_3g073450 | 94.017 | 234 | 14 | 0 | 40 | 273 | 71 | 304 | 1.17e-160 | 448 |
MS.gene35640.t1 | MTR_7g087250 | 46.535 | 202 | 106 | 1 | 53 | 252 | 103 | 304 | 1.40e-57 | 187 |
MS.gene35640.t1 | MTR_7g087250 | 42.604 | 169 | 95 | 1 | 53 | 219 | 103 | 271 | 1.66e-36 | 131 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35640.t1 | AT1G36390 | 54.359 | 195 | 89 | 0 | 63 | 257 | 78 | 272 | 9.17e-68 | 212 |
MS.gene35640.t1 | AT1G36390 | 54.359 | 195 | 89 | 0 | 63 | 257 | 78 | 272 | 9.17e-68 | 212 |
MS.gene35640.t1 | AT5G17710 | 49.738 | 191 | 94 | 2 | 63 | 252 | 115 | 304 | 6.01e-55 | 180 |
MS.gene35640.t1 | AT5G17710 | 49.738 | 191 | 94 | 2 | 63 | 252 | 113 | 302 | 6.76e-55 | 180 |
MS.gene35640.t1 | AT5G17710 | 49.738 | 191 | 94 | 2 | 63 | 252 | 113 | 302 | 6.76e-55 | 180 |
Find 52 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAGATTTACCAAGCTTAT+TGG | 0.223350 | 3.3:+63553088 | MS.gene35640:CDS |
TAACTTACCAAAGGATTAAA+AGG | 0.227686 | 3.3:-63553524 | None:intergenic |
TGAGGAGTCCGAAGTGTTTA+AGG | 0.256357 | 3.3:+63555427 | MS.gene35640:CDS |
TTCGTGTTGGCCACGGTTGA+TGG | 0.276701 | 3.3:-63548454 | None:intergenic |
TGAAGAAATAATACAATCTA+AGG | 0.316412 | 3.3:+63553172 | MS.gene35640:CDS |
TTGATGGCTGCTCCAAGGAC+TGG | 0.358588 | 3.3:-63555568 | None:intergenic |
TACAAGAAAGCCTTTCTTAA+CGG | 0.370413 | 3.3:+63553125 | MS.gene35640:CDS |
TCAATTCTAGCAGCTGTTGA+TGG | 0.374139 | 3.3:-63555584 | None:intergenic |
CAGTGACCTCAATGTCGATT+TGG | 0.386412 | 3.3:-63548512 | None:intergenic |
GCACTTGTGAAGGTTTCCTT+AGG | 0.414176 | 3.3:+63555512 | MS.gene35640:CDS |
AGCAATTTGTAGAGACTTTG+AGG | 0.424003 | 3.3:+63553465 | MS.gene35640:CDS |
AGTGGCATCTACCCAGTCCT+TGG | 0.435806 | 3.3:+63555556 | MS.gene35640:CDS |
CTTTCCATCGCCGTTAAGAA+AGG | 0.448413 | 3.3:-63553135 | None:intergenic |
AGGTTTCTTGCTCAAAGATA+AGG | 0.453331 | 3.3:+63555478 | MS.gene35640:CDS |
GTGAAGGTTTCCTTAGGTCC+CGG | 0.454329 | 3.3:+63555518 | MS.gene35640:CDS |
TGCTCAAAGATAAGGTTGTA+AGG | 0.460819 | 3.3:+63555486 | MS.gene35640:CDS |
GGAAAGAATTAGCATTCAAT+CGG | 0.485047 | 3.3:+63553316 | MS.gene35640:CDS |
TGATGGCTGCTCCAAGGACT+GGG | 0.486960 | 3.3:-63555567 | None:intergenic |
ACAACAGATTGAAGCGGAAA+CGG | 0.508186 | 3.3:+63553400 | MS.gene35640:CDS |
AAAACAGACGAGACTCGAAA+TGG | 0.509669 | 3.3:+63553056 | MS.gene35640:CDS |
AAAGCCTTTCTTAACGGCGA+TGG | 0.510023 | 3.3:+63553131 | MS.gene35640:CDS |
TATCAAAATCCGCTTGCAAA+CGG | 0.510414 | 3.3:-63553271 | None:intergenic |
AAGGAAACCTTCACAAGTGC+TGG | 0.513889 | 3.3:-63555509 | None:intergenic |
GTTTGTTACGACGGAAGCTA+TGG | 0.517000 | 3.3:-63548541 | None:intergenic |
CTTTCTTGTATGCTTTAACA+AGG | 0.523367 | 3.3:-63553112 | None:intergenic |
GCCACGGTTGATGGCGGTGA+CGG | 0.528175 | 3.3:-63548445 | None:intergenic |
TGAAGGTTTCCTTAGGTCCC+GGG | 0.534603 | 3.3:+63555519 | MS.gene35640:CDS |
TTAACAAGGACCAATAAGCT+TGG | 0.547746 | 3.3:-63553098 | None:intergenic |
GTTTCTGTGGTTGTAACAGT+TGG | 0.553708 | 3.3:+63553497 | MS.gene35640:CDS |
GAGTCCGAAGTGTTTAAGGA+AGG | 0.560329 | 3.3:+63555431 | MS.gene35640:CDS |
AATCCCTTCCTTAAACACTT+CGG | 0.563851 | 3.3:-63555435 | None:intergenic |
GAGGAGTCATCATGTTTCTG+TGG | 0.572246 | 3.3:+63553484 | MS.gene35640:CDS |
TGTAAGGCCAGCACTTGTGA+AGG | 0.574016 | 3.3:+63555502 | MS.gene35640:CDS |
TACAATCTAAGGCAATTGAA+AGG | 0.576919 | 3.3:+63553183 | MS.gene35640:CDS |
AGCTGTTGATGGCTGCTCCA+AGG | 0.578183 | 3.3:-63555573 | None:intergenic |
TTTGAGCAAGAAACCTCGAC+GGG | 0.582305 | 3.3:-63555471 | None:intergenic |
ACATGAAGCCGTTGGACGTG+AGG | 0.584494 | 3.3:+63555409 | MS.gene35640:CDS |
GCAATATCTCCGTTTGCAAG+CGG | 0.589266 | 3.3:+63553262 | MS.gene35640:CDS |
AGTCCGAAGTGTTTAAGGAA+GGG | 0.590140 | 3.3:+63555432 | MS.gene35640:CDS |
CTTTAGGAAAAGATGTGAGA+AGG | 0.603142 | 3.3:+63553295 | MS.gene35640:CDS |
TTGCAGATACATGAAGCCGT+TGG | 0.609028 | 3.3:+63555401 | MS.gene35640:intron |
TGTTACGACGGAAGCTATGG+CGG | 0.613080 | 3.3:-63548538 | None:intergenic |
TTCGGACTCCTCACGTCCAA+CGG | 0.617680 | 3.3:-63555417 | None:intergenic |
AGTTAAACAACAGATTGAAG+CGG | 0.621582 | 3.3:+63553394 | MS.gene35640:CDS |
GAAAGTATCTAGTTTATCCG+CGG | 0.637283 | 3.3:+63553220 | MS.gene35640:CDS |
TTTACAAGAAACTTTATCCG+CGG | 0.638607 | 3.3:-63553237 | None:intergenic |
CTTTGAGCAAGAAACCTCGA+CGG | 0.642365 | 3.3:-63555472 | None:intergenic |
ACCGTCACCGCCATCAACCG+TGG | 0.643015 | 3.3:+63548444 | MS.gene35640:CDS |
CGAAAGCCAAATCGACATTG+AGG | 0.652574 | 3.3:+63548506 | MS.gene35640:CDS |
TGTAGACACTGTAAGTGCGA+AGG | 0.657751 | 3.3:-63548479 | None:intergenic |
ATAATTAAAGAATCCCGTCG+AGG | 0.675021 | 3.3:+63555458 | MS.gene35640:CDS |
GTGTTGGCCACGGTTGATGG+CGG | 0.686599 | 3.3:-63548451 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 63548435 | 63555616 | 63548435 | ID=MS.gene35640 |
chr3.3 | mRNA | 63548435 | 63555616 | 63548435 | ID=MS.gene35640.t1;Parent=MS.gene35640 |
chr3.3 | exon | 63548435 | 63548554 | 63548435 | ID=MS.gene35640.t1.exon1;Parent=MS.gene35640.t1 |
chr3.3 | CDS | 63548435 | 63548554 | 63548435 | ID=cds.MS.gene35640.t1;Parent=MS.gene35640.t1 |
chr3.3 | exon | 63553047 | 63553538 | 63553047 | ID=MS.gene35640.t1.exon2;Parent=MS.gene35640.t1 |
chr3.3 | CDS | 63553047 | 63553538 | 63553047 | ID=cds.MS.gene35640.t1;Parent=MS.gene35640.t1 |
chr3.3 | exon | 63555407 | 63555616 | 63555407 | ID=MS.gene35640.t1.exon3;Parent=MS.gene35640.t1 |
chr3.3 | CDS | 63555407 | 63555616 | 63555407 | ID=cds.MS.gene35640.t1;Parent=MS.gene35640.t1 |
Gene Sequence |
Protein sequence |