AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35899

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35899.t1 MTR_5g072860 82.561 453 49 1 12 434 18 470 0.0 763
MS.gene35899.t1 MTR_5g075440 49.015 457 197 3 7 431 5 457 1.61e-153 443
MS.gene35899.t1 MTR_3g031450 47.854 466 189 9 1 430 5 452 1.19e-139 408
MS.gene35899.t1 MTR_3g031400 48.276 464 185 9 2 430 7 450 1.09e-138 405
MS.gene35899.t1 MTR_5g072810 44.371 453 210 7 10 429 10 453 8.49e-125 370
MS.gene35899.t1 MTR_5g072840 43.202 456 208 9 11 430 9 449 2.44e-117 350
MS.gene35899.t1 MTR_5g072820 43.478 460 201 10 10 429 8 448 3.96e-116 347
MS.gene35899.t1 MTR_5g072830 42.484 459 205 9 11 429 9 448 8.59e-115 344
MS.gene35899.t1 MTR_5g072850 41.048 458 160 9 5 430 3 382 1.90e-105 318
MS.gene35899.t1 MTR_6g014040 27.869 488 267 19 12 430 10 481 1.93e-38 145
MS.gene35899.t1 MTR_8g088560 26.439 469 273 17 12 429 10 457 3.56e-37 141
MS.gene35899.t1 MTR_7g011470 28.601 479 260 17 12 430 10 466 5.58e-37 141
MS.gene35899.t1 MTR_6g038220 26.580 459 280 12 12 429 11 453 7.49e-37 140
MS.gene35899.t1 MTR_3g008010 27.778 486 267 19 12 430 10 478 8.75e-37 140
MS.gene35899.t1 MTR_8g059425 27.010 485 272 18 12 430 10 478 4.48e-36 139
MS.gene35899.t1 MTR_6g013900 27.959 490 262 20 12 430 10 479 1.26e-35 137
MS.gene35899.t1 MTR_6g014270 28.106 491 263 19 12 430 7 479 1.62e-35 137
MS.gene35899.t1 MTR_6g014200 28.542 487 264 20 12 430 7 477 1.67e-35 137
MS.gene35899.t1 MTR_6g038240 26.809 470 268 17 12 430 11 455 1.74e-35 137
MS.gene35899.t1 MTR_3g079480 27.122 483 276 16 12 431 21 490 2.29e-35 137
MS.gene35899.t1 MTR_2g008210 26.205 477 284 16 12 430 11 477 2.94e-35 136
MS.gene35899.t1 MTR_6g013440 28.016 489 264 19 12 430 11 481 3.45e-35 136
MS.gene35899.t1 MTR_7g011470 28.452 478 258 18 12 430 10 462 3.54e-35 136
MS.gene35899.t1 MTR_0288s0020 26.789 489 251 17 12 430 10 461 4.90e-35 135
MS.gene35899.t1 MTR_3g069710 25.486 463 277 11 13 430 13 452 5.15e-35 135
MS.gene35899.t1 MTR_6g014290 26.955 486 271 18 12 430 10 478 9.05e-35 135
MS.gene35899.t1 MTR_3g479490 26.556 482 278 16 12 430 6 474 1.23e-34 134
MS.gene35899.t1 MTR_8g083290 27.119 472 278 15 13 430 5 464 1.39e-34 134
MS.gene35899.t1 MTR_5g035580 27.646 463 262 16 12 426 13 450 1.61e-34 134
MS.gene35899.t1 MTR_6g013920 28.484 488 262 20 12 430 10 479 1.64e-34 134
MS.gene35899.t1 MTR_6g014310 26.585 489 271 17 12 430 11 481 2.29e-34 134
MS.gene35899.t1 MTR_3g069690 25.751 466 278 13 11 430 7 450 2.86e-34 133
MS.gene35899.t1 MTR_3g479520 25.988 481 284 15 12 431 15 484 3.60e-34 133
MS.gene35899.t1 MTR_6g011340 28.106 491 261 18 12 430 10 480 1.39e-33 132
MS.gene35899.t1 MTR_6g038230 25.862 464 280 15 11 429 10 454 1.48e-33 131
MS.gene35899.t1 MTR_6g014250 25.773 485 278 17 12 430 10 478 3.00e-33 130
MS.gene35899.t1 MTR_5g464810 26.804 485 273 21 11 430 11 478 4.60e-33 130
MS.gene35899.t1 MTR_5g064240 26.804 485 273 21 11 430 11 478 4.60e-33 130
MS.gene35899.t1 MTR_6g014220 26.392 485 275 18 12 430 10 478 6.31e-33 130
MS.gene35899.t1 MTR_6g013960 26.132 486 277 18 12 430 10 480 1.23e-32 129
MS.gene35899.t1 MTR_6g013450 26.639 488 279 17 9 430 7 481 1.41e-32 129
MS.gene35899.t1 MTR_6g014187 25.615 488 277 17 12 430 10 480 1.81e-32 129
MS.gene35899.t1 MTR_6g038200 25.216 464 285 13 10 429 9 454 1.97e-32 128
MS.gene35899.t1 MTR_4g094220 26.815 496 272 18 1 426 1 475 2.21e-32 128
MS.gene35899.t1 MTR_0036s0220 25.826 484 277 20 12 430 12 478 3.28e-32 128
MS.gene35899.t1 MTR_6g038300 25.758 462 282 13 12 429 11 455 3.74e-32 127
MS.gene35899.t1 MTR_7g080940 25.847 472 273 17 12 431 11 457 3.96e-32 127
MS.gene35899.t1 MTR_5g464760 26.087 483 279 20 12 430 12 480 4.06e-32 127
MS.gene35899.t1 MTR_6g014020 27.459 488 268 20 12 430 10 480 4.11e-32 127
MS.gene35899.t1 MTR_6g013990 27.329 483 273 19 12 430 10 478 5.18e-32 127
MS.gene35899.t1 MTR_6g014050 28.279 488 264 20 12 430 11 481 6.27e-32 127
MS.gene35899.t1 MTR_6g014170 27.235 481 260 20 12 430 10 462 6.80e-32 127
MS.gene35899.t1 MTR_6g014150 27.926 487 267 19 12 430 7 477 1.14e-31 126
MS.gene35899.t1 MTR_7g080950 24.841 471 278 16 11 431 5 449 2.27e-31 125
MS.gene35899.t1 MTR_6g014300 25.988 481 268 17 12 430 12 466 4.70e-31 124
MS.gene35899.t1 MTR_6g014186 26.915 457 272 18 12 430 7 439 1.35e-30 122
MS.gene35899.t1 MTR_1g107380 24.899 494 269 18 9 430 10 473 1.60e-30 123
MS.gene35899.t1 MTR_1g107375 26.395 466 279 17 10 429 6 453 1.78e-30 122
MS.gene35899.t1 MTR_3g084520 26.200 500 254 18 12 429 6 472 6.59e-30 121
MS.gene35899.t1 MTR_5g058320 26.598 485 267 20 9 430 7 465 7.36e-30 121
MS.gene35899.t1 MTR_8g083280 25.407 492 256 15 13 430 8 462 8.46e-30 121
MS.gene35899.t1 MTR_5g035560 26.013 469 274 16 11 431 10 453 1.18e-29 120
MS.gene35899.t1 MTR_3g049970 25.410 488 267 16 12 429 9 469 3.02e-29 119
MS.gene35899.t1 MTR_1g107350 24.686 478 283 16 12 429 8 468 5.25e-29 119
MS.gene35899.t1 MTR_5g031840 25.424 472 287 16 10 429 3 461 7.93e-29 118
MS.gene35899.t1 MTR_3g479470 26.337 486 275 17 12 431 13 481 9.53e-29 118
MS.gene35899.t1 MTR_7g102490 23.695 498 288 14 9 430 6 487 1.25e-28 118
MS.gene35899.t1 MTR_5g016480 24.180 488 279 17 13 432 9 473 1.55e-28 117
MS.gene35899.t1 MTR_7g080935 25.591 465 282 15 11 431 10 454 2.53e-28 116
MS.gene35899.t1 MTR_1g107365 25.316 474 271 16 12 429 45 491 9.45e-28 115
MS.gene35899.t1 MTR_7g102460 24.131 489 295 14 9 430 6 485 1.24e-27 115
MS.gene35899.t1 MTR_6g014240 25.261 479 260 17 12 430 7 447 2.96e-27 113
MS.gene35899.t1 MTR_7g117170 26.392 485 276 16 2 425 7 471 4.20e-27 113
MS.gene35899.t1 MTR_1g107360 24.845 483 268 14 12 429 9 461 5.39e-27 113
MS.gene35899.t1 MTR_7g013240 24.123 456 280 13 12 426 6 436 5.71e-27 112
MS.gene35899.t1 MTR_7g013180 25.163 461 266 15 12 420 5 438 5.90e-27 112
MS.gene35899.t1 MTR_7g080900 23.840 474 301 14 1 431 1 457 1.14e-26 112
MS.gene35899.t1 MTR_8g064870 25.364 481 286 15 13 434 12 478 1.20e-26 112
MS.gene35899.t1 MTR_4g094920 23.729 472 296 14 9 430 23 480 3.68e-26 110
MS.gene35899.t1 MTR_4g064987 25.847 472 266 15 13 430 9 450 3.88e-26 110
MS.gene35899.t1 MTR_1g107315 24.583 480 283 16 11 429 7 468 3.93e-26 110
MS.gene35899.t1 MTR_3g084530 24.792 480 286 17 12 429 6 472 4.33e-26 110
MS.gene35899.t1 MTR_7g013260 24.946 465 266 15 12 426 6 437 4.53e-26 110
MS.gene35899.t1 MTR_7g070610 25.833 480 274 18 12 422 13 479 5.94e-26 110
MS.gene35899.t1 MTR_1g062380 25.347 505 267 19 12 431 16 495 6.53e-26 110
MS.gene35899.t1 MTR_1g107285 26.458 480 265 18 13 429 9 463 8.48e-26 109
MS.gene35899.t1 MTR_5g098930 24.089 494 270 18 13 431 6 469 1.05e-25 109
MS.gene35899.t1 MTR_5g031830 25.000 500 274 16 1 429 1 470 1.42e-25 108
MS.gene35899.t1 MTR_7g055710 24.370 476 285 14 12 422 11 476 1.43e-25 108
MS.gene35899.t1 MTR_7g070660 24.846 487 279 18 12 429 11 479 1.86e-25 108
MS.gene35899.t1 MTR_5g072825 49.485 97 41 3 8 102 4 94 2.78e-25 99.4
MS.gene35899.t1 MTR_7g013200 24.236 458 278 15 12 426 5 436 2.80e-25 107
MS.gene35899.t1 MTR_4g485630 25.257 487 273 19 12 429 9 473 3.34e-25 107
MS.gene35899.t1 MTR_8g064880 26.423 492 273 16 12 434 9 480 3.85e-25 107
MS.gene35899.t1 MTR_8g066610 24.597 496 263 19 12 426 9 474 4.58e-25 107
MS.gene35899.t1 MTR_3g084540 25.052 483 282 18 12 429 6 473 5.05e-25 107
MS.gene35899.t1 MTR_0184s0040 25.577 477 269 15 6 418 15 469 6.06e-25 107
MS.gene35899.t1 MTR_0078s0190 25.577 477 269 15 6 418 15 469 6.06e-25 107
MS.gene35899.t1 MTR_7g070940 24.686 478 280 15 12 426 9 469 1.12e-24 106
MS.gene35899.t1 MTR_6g013680 28.141 398 219 18 66 430 12 375 1.16e-24 105
MS.gene35899.t1 MTR_1g032490 24.066 482 289 17 8 429 6 470 1.22e-24 106
MS.gene35899.t1 MTR_8g009050 23.690 477 285 14 10 425 4 462 1.81e-24 105
MS.gene35899.t1 MTR_5g031860 25.000 476 281 16 12 429 12 469 3.22e-24 105
MS.gene35899.t1 MTR_4g064987 25.636 472 261 16 13 430 9 444 4.44e-24 104
MS.gene35899.t1 MTR_8g077590 27.101 476 255 16 9 418 6 455 4.47e-24 104
MS.gene35899.t1 MTR_4g024020 23.494 498 290 16 9 430 6 488 1.09e-23 103
MS.gene35899.t1 MTR_8g027885 24.738 477 262 17 13 422 19 465 1.19e-23 103
MS.gene35899.t1 MTR_7g071040 23.640 478 287 13 12 422 17 483 1.29e-23 103
MS.gene35899.t1 MTR_0078s0010 24.895 478 272 16 10 422 4 459 1.57e-23 102
MS.gene35899.t1 MTR_8g465670 23.810 483 280 12 11 426 6 467 2.64e-23 102
MS.gene35899.t1 MTR_4g095008 22.689 476 290 18 12 430 11 465 2.74e-23 102
MS.gene35899.t1 MTR_7g070800 25.159 473 282 16 12 422 6 468 4.00e-23 102
MS.gene35899.t1 MTR_8g027870 25.523 478 257 17 13 422 19 465 5.67e-23 101
MS.gene35899.t1 MTR_8g009063 24.008 479 281 15 10 425 11 469 7.16e-23 100
MS.gene35899.t1 MTR_8g043470 24.279 416 212 12 66 430 15 378 7.22e-23 100
MS.gene35899.t1 MTR_7g117405 22.938 497 278 16 12 430 12 481 8.21e-23 100
MS.gene35899.t1 MTR_1g019510 25.210 476 276 17 10 425 4 459 1.39e-22 100
MS.gene35899.t1 MTR_8g009055 24.364 472 282 13 10 422 4 459 1.62e-22 100
MS.gene35899.t1 MTR_7g070860 25.435 460 283 14 12 422 7 455 1.91e-22 99.8
MS.gene35899.t1 MTR_4g008630 24.635 479 268 17 13 429 15 462 2.16e-22 99.4
MS.gene35899.t1 MTR_7g070780 24.795 488 282 17 12 429 11 483 2.16e-22 99.8
MS.gene35899.t1 MTR_7g070910 24.160 476 287 14 12 422 11 477 3.09e-22 99.4
MS.gene35899.t1 MTR_8g009073 24.893 466 275 13 10 417 4 452 4.71e-22 98.6
MS.gene35899.t1 MTR_7g013220 26.190 462 264 17 12 420 5 442 4.99e-22 98.2
MS.gene35899.t1 MTR_3g009510 23.434 495 275 15 11 426 4 473 7.43e-22 98.2
MS.gene35899.t1 MTR_7g102550 23.124 493 282 17 12 426 9 482 7.92e-22 97.8
MS.gene35899.t1 MTR_2g040530 23.663 486 275 18 13 429 6 464 8.13e-22 97.8
MS.gene35899.t1 MTR_4g485620 24.250 400 231 13 88 431 76 459 1.02e-21 97.4
MS.gene35899.t1 MTR_5g045960 22.445 499 286 13 12 430 9 486 2.34e-21 96.7
MS.gene35899.t1 MTR_8g006730 24.746 493 273 17 11 433 5 469 2.62e-21 96.3
MS.gene35899.t1 MTR_3g479610 26.367 311 169 9 170 431 15 314 2.98e-21 94.4
MS.gene35899.t1 MTR_5g070090 25.895 475 273 22 11 429 10 461 3.71e-21 95.9
MS.gene35899.t1 MTR_4g117960 24.074 486 277 18 16 429 15 480 4.23e-21 95.9
MS.gene35899.t1 MTR_8g008990 23.899 477 280 14 10 422 4 461 5.14e-21 95.5
MS.gene35899.t1 MTR_0184s0030 24.174 484 284 13 10 430 4 467 5.70e-21 95.5
MS.gene35899.t1 MTR_8g012745 26.110 383 206 12 103 425 99 464 1.08e-20 94.7
MS.gene35899.t1 MTR_7g102520 22.736 497 287 17 12 430 12 489 1.17e-20 94.7
MS.gene35899.t1 MTR_6g013435 25.000 320 213 8 123 430 3 307 1.32e-20 92.4
MS.gene35899.t1 MTR_7g047030 24.894 470 274 15 10 418 4 455 1.53e-20 94.0
MS.gene35899.t1 MTR_7g047270 24.894 470 274 15 10 418 4 455 1.53e-20 94.0
MS.gene35899.t1 MTR_7g070810 23.602 483 288 16 12 429 9 475 1.46e-19 91.3
MS.gene35899.t1 MTR_5g016660 23.422 491 278 14 9 422 7 476 1.49e-19 91.3
MS.gene35899.t1 MTR_8g012635 27.390 387 199 15 103 425 99 467 1.77e-19 90.9
MS.gene35899.t1 MTR_0078s0060 23.983 467 268 16 10 412 4 447 2.06e-19 90.5
MS.gene35899.t1 MTR_6g023665 24.375 480 274 16 11 425 12 467 2.20e-19 90.5
MS.gene35899.t1 MTR_6g033725 22.594 478 280 14 13 425 5 457 2.99e-19 90.1
MS.gene35899.t1 MTR_5g087620 22.638 508 283 20 12 431 10 495 4.14e-19 89.7
MS.gene35899.t1 MTR_8g466240 23.368 475 278 15 9 426 5 450 4.56e-19 89.4
MS.gene35899.t1 MTR_4g108250 23.750 480 287 15 12 422 11 480 4.78e-19 89.7
MS.gene35899.t1 MTR_8g032950 22.153 483 295 14 13 429 13 480 6.56e-19 89.4
MS.gene35899.t1 MTR_8g008970 23.899 477 282 15 10 425 4 460 7.46e-19 89.7
MS.gene35899.t1 MTR_8g006710 24.082 490 275 19 13 433 7 468 8.32e-19 89.0
MS.gene35899.t1 MTR_7g102450 21.921 479 299 12 12 431 11 473 8.59e-19 89.0
MS.gene35899.t1 MTR_8g012650 26.546 388 192 16 113 430 111 475 1.20e-18 88.2
MS.gene35899.t1 MTR_7g046490 28.254 315 141 14 176 427 169 461 1.84e-18 87.8
MS.gene35899.t1 MTR_7g070740 23.109 476 291 15 12 422 11 476 2.73e-18 87.4
MS.gene35899.t1 MTR_6g005600 23.577 492 252 16 11 418 5 456 4.41e-18 86.7
MS.gene35899.t1 MTR_6g033625 22.642 477 270 16 13 418 5 453 5.95e-18 86.3
MS.gene35899.t1 MTR_6g014190 26.996 263 130 9 219 430 36 287 1.25e-17 83.2
MS.gene35899.t1 MTR_8g009067 23.591 479 283 15 10 426 4 461 1.99e-17 84.7
MS.gene35899.t1 MTR_8g068330 22.706 436 258 15 12 387 8 424 2.96e-17 84.0
MS.gene35899.t1 MTR_7g070930 23.368 475 292 13 12 422 14 480 5.79e-17 83.2
MS.gene35899.t1 MTR_5g070040 23.467 473 270 15 11 418 10 455 7.38e-17 82.8
MS.gene35899.t1 MTR_5g090660 21.721 488 292 16 11 430 4 469 9.41e-17 82.8
MS.gene35899.t1 MTR_6g033660 22.407 482 274 13 13 423 5 457 9.45e-17 82.4
MS.gene35899.t1 MTR_6g488280 23.140 484 275 18 11 425 5 460 9.95e-17 82.4
MS.gene35899.t1 MTR_0428s0010 23.140 484 275 18 11 425 5 460 9.95e-17 82.4
MS.gene35899.t1 MTR_2g046820 25.483 259 132 9 220 426 210 459 1.20e-16 82.0
MS.gene35899.t1 MTR_2g046750 22.314 484 281 16 12 426 5 462 1.74e-16 81.6
MS.gene35899.t1 MTR_8g009067 25.496 353 193 12 128 426 7 343 3.04e-16 80.1
MS.gene35899.t1 MTR_5g090620 21.748 492 292 16 13 431 6 477 5.46e-16 80.1
MS.gene35899.t1 MTR_5g090700 21.800 500 281 18 11 430 4 473 6.42e-16 80.1
MS.gene35899.t1 MTR_5g090580 21.633 490 298 15 11 431 4 476 8.77e-16 79.7
MS.gene35899.t1 MTR_5g090670 22.535 497 287 18 11 431 4 478 1.23e-15 79.3
MS.gene35899.t1 MTR_8g009073 27.273 297 148 10 176 417 40 323 1.40e-15 77.8
MS.gene35899.t1 MTR_8g071070 21.856 485 285 16 11 426 6 465 3.89e-15 77.8
MS.gene35899.t1 MTR_8g006270 25.064 391 200 15 104 426 95 460 5.95e-15 77.0
MS.gene35899.t1 MTR_8g006220 24.762 315 209 6 11 315 5 301 1.26e-14 76.3
MS.gene35899.t1 MTR_0477s0010 24.859 354 175 10 126 430 6 317 1.42e-14 74.7
MS.gene35899.t1 MTR_8g006260 24.599 374 195 13 114 425 114 462 1.45e-14 75.9
MS.gene35899.t1 MTR_7g080960 31.000 200 107 7 242 431 294 472 1.79e-14 75.5
MS.gene35899.t1 MTR_2g098430 22.515 493 280 18 13 426 7 476 1.91e-14 75.5
MS.gene35899.t1 MTR_8g074550 26.163 344 211 12 11 331 7 330 4.90e-14 74.3
MS.gene35899.t1 MTR_5g090630 22.131 488 287 15 11 430 4 466 6.24e-14 73.9
MS.gene35899.t1 MTR_6g033615 22.553 470 265 17 13 418 5 439 1.16e-13 73.2
MS.gene35899.t1 MTR_0078s0200 25.237 317 211 8 10 315 4 305 2.68e-13 70.9
MS.gene35899.t1 MTR_2g008225 22.272 449 277 17 12 407 15 444 4.38e-13 71.2
MS.gene35899.t1 MTR_6g078320 22.567 483 287 17 10 423 9 473 7.86e-13 70.5
MS.gene35899.t1 MTR_8g006230 28.708 209 125 7 115 316 55 246 1.62e-12 68.2
MS.gene35899.t1 MTR_4g123553 21.348 445 281 15 12 407 15 439 1.70e-12 69.3
MS.gene35899.t1 MTR_4g082810 35.156 128 66 6 196 315 193 311 2.19e-12 68.9
MS.gene35899.t1 MTR_8g068360 23.867 331 211 13 12 320 12 323 2.72e-12 68.9
MS.gene35899.t1 MTR_3g479620 31.875 160 98 6 12 162 6 163 4.41e-12 64.7
MS.gene35899.t1 MTR_7g070870 22.601 323 216 9 8 315 15 318 1.14e-11 67.0
MS.gene35899.t1 MTR_4g082820 21.694 484 284 19 10 426 5 460 1.56e-11 66.2
MS.gene35899.t1 MTR_2g008220 22.026 454 272 17 12 407 14 443 1.89e-11 66.2
MS.gene35899.t1 MTR_1g090270 21.918 438 268 13 12 396 15 431 4.20e-11 65.1
MS.gene35899.t1 MTR_6g014160 23.881 335 180 13 66 348 47 358 5.31e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35899.t1 AT2G30150 46.004 463 205 10 1 429 1 452 6.30e-131 385
MS.gene35899.t1 AT2G30150 45.861 447 198 9 16 429 1 436 2.31e-127 375
MS.gene35899.t1 AT2G30140 45.788 463 200 10 4 429 3 451 4.54e-125 370
MS.gene35899.t1 AT2G30140 45.788 463 199 10 4 429 3 450 9.10e-125 370
MS.gene35899.t1 AT2G36970 25.826 484 270 15 12 429 10 470 2.97e-43 159
MS.gene35899.t1 AT1G05675 25.591 465 277 11 11 426 5 449 5.68e-41 151
MS.gene35899.t1 AT2G28080 26.226 469 274 12 16 430 22 472 6.35e-41 152
MS.gene35899.t1 AT1G05680 26.237 465 274 12 11 426 5 449 1.12e-40 150
MS.gene35899.t1 AT2G31750 27.484 473 266 16 11 430 7 455 1.91e-38 145
MS.gene35899.t1 AT2G31750 27.254 477 270 16 11 434 7 459 5.04e-38 144
MS.gene35899.t1 AT1G22400 26.132 486 284 17 12 434 13 486 1.74e-37 142
MS.gene35899.t1 AT2G43840 26.778 478 252 16 12 429 7 446 3.56e-37 141
MS.gene35899.t1 AT2G43840 26.778 478 252 16 12 429 7 446 6.70e-37 140
MS.gene35899.t1 AT1G22380 25.755 497 273 16 12 435 13 486 3.27e-35 136
MS.gene35899.t1 AT1G78270 26.033 484 278 18 12 430 13 481 3.55e-35 136
MS.gene35899.t1 AT1G22360 26.132 486 279 17 12 432 10 480 7.83e-35 135
MS.gene35899.t1 AT4G15480 23.859 482 299 13 6 432 13 481 9.58e-35 135
MS.gene35899.t1 AT1G22340 25.104 482 286 16 12 430 13 482 1.53e-34 134
MS.gene35899.t1 AT2G43820 26.709 468 265 17 12 429 7 446 1.89e-34 134
MS.gene35899.t1 AT5G05900 28.051 467 262 15 13 431 9 449 5.45e-33 129
MS.gene35899.t1 AT1G24100 26.582 474 276 14 7 429 6 458 2.71e-32 128
MS.gene35899.t1 AT3G21560 25.050 499 287 18 1 435 1 476 4.90e-32 127
MS.gene35899.t1 AT5G38040 25.764 458 266 16 20 429 18 449 1.87e-31 125
MS.gene35899.t1 AT4G01070 25.000 476 273 15 10 422 6 460 1.97e-31 125
MS.gene35899.t1 AT3G46660 24.893 466 280 14 8 426 10 452 2.89e-31 125
MS.gene35899.t1 AT3G11340 26.338 467 264 17 13 430 10 445 4.05e-31 124
MS.gene35899.t1 AT2G31790 24.678 466 282 16 12 427 8 454 5.51e-31 124
MS.gene35899.t1 AT1G01420 25.974 462 253 14 10 406 6 443 8.79e-31 124
MS.gene35899.t1 AT1G01420 25.974 462 253 14 10 406 9 446 1.15e-30 123
MS.gene35899.t1 AT4G15490 24.109 477 297 15 7 430 3 467 1.88e-30 123
MS.gene35899.t1 AT3G46670 25.161 465 278 14 8 426 5 445 2.91e-30 122
MS.gene35899.t1 AT2G36800 26.453 499 275 16 12 435 12 493 5.17e-30 122
MS.gene35899.t1 AT1G10400 24.895 478 283 18 11 431 6 464 1.07e-29 120
MS.gene35899.t1 AT3G02100 25.764 458 283 15 12 426 13 456 1.70e-29 120
MS.gene35899.t1 AT1G22360 24.691 486 274 16 12 432 10 468 1.76e-29 120
MS.gene35899.t1 AT5G05880 26.226 469 265 16 13 429 9 448 1.04e-28 117
MS.gene35899.t1 AT5G38010 24.576 472 274 15 12 429 10 453 1.84e-28 117
MS.gene35899.t1 AT1G22370 25.620 484 279 18 12 432 13 478 5.00e-28 116
MS.gene35899.t1 AT2G23250 24.832 447 280 14 21 429 7 435 5.45e-28 115
MS.gene35899.t1 AT5G05870 26.059 472 270 14 12 429 8 454 2.79e-27 114
MS.gene35899.t1 AT2G36780 23.944 497 287 17 9 431 11 490 7.07e-27 113
MS.gene35899.t1 AT5G05890 26.004 473 267 15 12 429 8 452 1.31e-26 111
MS.gene35899.t1 AT4G15280 23.139 497 280 13 12 431 4 475 2.56e-26 111
MS.gene35899.t1 AT2G23260 25.161 465 282 19 11 429 9 453 2.64e-26 110
MS.gene35899.t1 AT4G15280 23.139 497 280 13 12 431 36 507 2.89e-26 111
MS.gene35899.t1 AT4G01070 28.750 320 200 10 10 318 6 308 5.28e-26 108
MS.gene35899.t1 AT1G01390 26.434 488 271 15 10 434 6 468 1.70e-25 108
MS.gene35899.t1 AT1G01390 26.434 488 271 15 10 434 23 485 1.91e-25 108
MS.gene35899.t1 AT1G05560 24.845 483 268 18 8 429 3 451 2.53e-25 108
MS.gene35899.t1 AT2G26480 24.026 462 283 14 13 430 9 446 2.78e-25 107
MS.gene35899.t1 AT5G59580 22.198 464 290 12 12 429 9 447 3.36e-25 107
MS.gene35899.t1 AT1G05560 24.845 483 268 18 8 429 53 501 4.65e-25 107
MS.gene35899.t1 AT3G21750 21.901 484 297 12 11 430 3 469 7.90e-25 106
MS.gene35899.t1 AT2G36790 25.502 498 291 15 2 431 4 489 1.09e-24 106
MS.gene35899.t1 AT5G59590 22.650 468 286 13 11 429 9 449 1.37e-24 105
MS.gene35899.t1 AT2G16890 26.186 485 265 22 12 429 9 467 3.96e-24 104
MS.gene35899.t1 AT3G21790 22.587 487 296 12 12 429 4 478 4.76e-24 104
MS.gene35899.t1 AT5G05860 25.322 466 273 15 13 430 10 448 5.25e-24 104
MS.gene35899.t1 AT5G14860 25.151 497 276 21 12 435 8 481 8.44e-24 103
MS.gene35899.t1 AT3G53160 23.848 499 279 19 12 431 8 484 2.29e-23 102
MS.gene35899.t1 AT2G36760 23.218 491 298 16 9 431 11 490 3.08e-23 102
MS.gene35899.t1 AT3G21800 22.474 485 293 12 13 429 6 475 5.34e-23 101
MS.gene35899.t1 AT3G53150 22.600 500 295 11 12 430 22 510 1.86e-22 100
MS.gene35899.t1 AT3G21780 22.965 479 294 15 12 429 4 468 3.53e-22 99.0
MS.gene35899.t1 AT4G15550 24.380 484 279 17 8 426 9 470 5.35e-22 98.6
MS.gene35899.t1 AT3G21760 23.061 490 292 14 12 429 4 480 1.31e-21 97.4
MS.gene35899.t1 AT4G34131 24.551 501 268 20 7 426 5 476 4.16e-21 95.9
MS.gene35899.t1 AT2G29740 24.431 483 286 16 11 429 7 474 4.28e-21 95.9
MS.gene35899.t1 AT3G46700 22.609 460 290 15 12 429 9 444 1.34e-20 94.0
MS.gene35899.t1 AT1G05530 22.222 477 287 13 12 430 5 455 1.79e-20 94.0
MS.gene35899.t1 AT3G46690 24.295 461 280 15 12 426 9 446 1.98e-20 93.6
MS.gene35899.t1 AT2G18570 24.689 482 265 15 12 422 5 459 3.38e-20 93.2
MS.gene35899.t1 AT2G15490 23.188 483 291 17 12 426 7 477 3.55e-20 93.2
MS.gene35899.t1 AT2G16890 26.591 440 233 20 12 385 9 424 5.28e-20 92.0
MS.gene35899.t1 AT5G03490 24.524 473 268 18 5 420 14 454 6.17e-20 92.4
MS.gene35899.t1 AT5G17050 21.458 480 306 15 1 431 1 458 4.30e-19 89.7
MS.gene35899.t1 AT3G55700 22.718 471 283 15 13 430 9 451 5.03e-19 89.4
MS.gene35899.t1 AT2G29750 24.390 492 280 19 11 432 7 476 1.04e-18 88.6
MS.gene35899.t1 AT3G55710 22.622 473 285 15 13 430 9 455 6.38e-18 86.3
MS.gene35899.t1 AT5G17030 22.016 486 295 18 1 431 1 457 2.68e-17 84.3
MS.gene35899.t1 AT5G26310 22.708 480 276 18 12 422 7 460 9.81e-17 82.8
MS.gene35899.t1 AT5G17040 21.674 466 290 14 11 430 4 440 3.32e-16 80.9
MS.gene35899.t1 AT5G12890 24.498 498 272 23 8 426 6 478 8.72e-16 79.7
MS.gene35899.t1 AT2G18560 24.745 392 205 14 96 422 3 369 2.90e-15 77.4
MS.gene35899.t1 AT5G65550 20.619 485 303 14 7 432 4 465 7.20e-15 76.6
MS.gene35899.t1 AT3G50740 22.561 492 255 17 12 413 7 462 8.21e-15 76.6
MS.gene35899.t1 AT5G37950 24.627 268 178 7 58 315 26 279 9.86e-14 72.8
MS.gene35899.t1 AT4G34135 24.138 493 271 19 12 426 11 478 1.40e-13 72.8
MS.gene35899.t1 AT5G66690 22.737 475 268 18 12 416 7 452 2.72e-13 72.0
MS.gene35899.t1 AT4G34135 24.779 339 197 14 12 315 11 326 1.02e-11 66.2
MS.gene35899.t1 AT5G37950 23.881 268 174 7 58 315 26 273 1.55e-11 65.9

Find 112 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATGATAGTTATTTGTTT+TGG 0.190342 5.1:+56021682 MS.gene35899:CDS
TAGGCTTGTTAGAAGATTTA+TGG 0.205219 5.1:+56023116 MS.gene35899:CDS
AAAGGTTGGTCCATCATTAT+TGG 0.266008 5.1:-56023000 None:intergenic
TGAAGCTGTTGCTACTAAAA+TGG 0.273399 5.1:+56021605 MS.gene35899:CDS
GTGGTGGGTGGAGGAGGATT+TGG 0.277697 5.1:-56021345 None:intergenic
GTTAGAAGATTTATGGATTT+GGG 0.281168 5.1:+56023123 MS.gene35899:CDS
AATAACATGAAATCCTTTCT+TGG 0.283616 5.1:+56023234 MS.gene35899:CDS
TGTTAGAAGATTTATGGATT+TGG 0.300533 5.1:+56023122 MS.gene35899:CDS
GTAGGTCCAATTGTGTAAAT+TGG 0.309840 5.1:-56022603 None:intergenic
TATAATCATGTTTAACATCT+TGG 0.318063 5.1:-56022671 None:intergenic
CATCGTGAAGTTGAAAATCT+TGG 0.319053 5.1:-56022440 None:intergenic
GAAAGATATTTGTGGGGATA+AGG 0.325851 5.1:+56022851 MS.gene35899:CDS
TCTATACCAATTTACACAAT+TGG 0.329382 5.1:+56022597 MS.gene35899:CDS
ATCTTTGCCTCGACCTTCTT+CGG 0.344761 5.1:-56021568 None:intergenic
GGGTTGATGTGGCCGCGACC+TGG 0.348374 5.1:-56021390 None:intergenic
GCATATTTGTTGAAGATCTC+TGG 0.350949 5.1:-56023178 None:intergenic
AACTAACCTGAAGCATTTAC+TGG 0.357766 5.1:-56021819 None:intergenic
TTGAGGCTCAAGTTCATATA+TGG 0.359393 5.1:-56022547 None:intergenic
AAACGTGTGGATTACATTCC+GGG 0.361089 5.1:+56022399 MS.gene35899:CDS
TCTTCGGAGGGAACTACGTT+TGG 0.361946 5.1:-56021552 None:intergenic
GATTACCCAGTAAATGCTTC+AGG 0.373708 5.1:+56021813 MS.gene35899:CDS
CAAACGTGTGGATTACATTC+CGG 0.374925 5.1:+56022398 MS.gene35899:CDS
ATGTTCATGTTGCGTCGTTT+TGG 0.385300 5.1:+56021730 MS.gene35899:CDS
CTTTGGCCGTGACTAAAATA+AGG 0.387209 5.1:-56022630 None:intergenic
AAAGATATTTGTGGGGATAA+GGG 0.388826 5.1:+56022852 MS.gene35899:CDS
TATGAAAATGTTGAGGTTGT+TGG 0.398570 5.1:-56021442 None:intergenic
ATAGTTGAGGATTGGAAGGT+TGG 0.402228 5.1:+56023036 MS.gene35899:CDS
TGGCTAGATAATCAACCCTT+TGG 0.405021 5.1:+56022699 MS.gene35899:CDS
GGTTGGGTGGAGAGTGGAGA+AGG 0.409270 5.1:+56023053 MS.gene35899:CDS
TCTTACCTCTCCAATAATGA+TGG 0.427830 5.1:+56022990 MS.gene35899:CDS
GCTTGCATAGGTTCCTCATT+GGG 0.428883 5.1:-56021410 None:intergenic
GTGGGTGGAGGAGGATTTGG+AGG 0.452077 5.1:-56021342 None:intergenic
AGCTTGCATAGGTTCCTCAT+TGG 0.453326 5.1:-56021411 None:intergenic
AGAAGAAACGACGCCGACAT+AGG 0.455999 5.1:-56021753 None:intergenic
AACGTAGTTCCCTCCGAAGA+AGG 0.458701 5.1:+56021555 MS.gene35899:CDS
CTAAGTGGAAAGATATTTGT+GGG 0.463305 5.1:+56022844 MS.gene35899:CDS
TTTCTTGGTAATATATTACA+TGG 0.468210 5.1:+56023249 MS.gene35899:CDS
TTGGAAGGTTGGGTGGAGAG+TGG 0.469852 5.1:+56023047 MS.gene35899:CDS
GAGCTAATTCTAATAATCTA+CGG 0.470957 5.1:-56022476 None:intergenic
TAGTTGAGGATTGGAAGGTT+GGG 0.475505 5.1:+56023037 MS.gene35899:CDS
ATGTAATATATTACCAAGAA+AGG 0.476400 5.1:-56023247 None:intergenic
CCATTCTTCTGTGACTATGA+AGG 0.477696 5.1:-56021466 None:intergenic
GTAAGTATATAGTTGAGGAT+TGG 0.479235 5.1:+56023028 MS.gene35899:CDS
AAGATATTTGTGGGGATAAG+GGG 0.481885 5.1:+56022853 MS.gene35899:CDS
ACGTGAGTGGTGGGTGGAGG+AGG 0.483465 5.1:-56021351 None:intergenic
TTGTAGGGTCGGAGTTGATG+AGG 0.485403 5.1:-56021494 None:intergenic
TTACAAGAGTTGCGAATAAG+AGG 0.487308 5.1:+56021706 MS.gene35899:CDS
GAATCAAGTAGTTTCTCAAA+TGG 0.489984 5.1:-56021633 None:intergenic
ATCATGTTTAACATCTTGGT+TGG 0.495001 5.1:-56022667 None:intergenic
TGGGTGGAGAGTGGAGAAGG+AGG 0.497176 5.1:+56023056 MS.gene35899:CDS
TGTAGGGTCGGAGTTGATGA+GGG 0.497360 5.1:-56021493 None:intergenic
ACTACGTGAGTGGTGGGTGG+AGG 0.499536 5.1:-56021354 None:intergenic
AGGAGGATTTGGAGGTTCCA+TGG 0.502238 5.1:-56021334 None:intergenic
ATGTGGCCGCGACCTGGGTA+TGG 0.506573 5.1:-56021384 None:intergenic
ATTATTGGAGAGGTAAGAAA+AGG 0.507093 5.1:-56022985 None:intergenic
TATTGTGCTTTCTTCATCCA+TGG 0.508332 5.1:-56022510 None:intergenic
ACTATATACTTACTATTCAA+AGG 0.508938 5.1:-56023018 None:intergenic
TCTAAGTGGAAAGATATTTG+TGG 0.514263 5.1:+56022843 MS.gene35899:CDS
AGACGAATTGATGAGTTCCC+CGG 0.518887 5.1:-56022417 None:intergenic
TATACTTACTATTCAAAGGT+TGG 0.524591 5.1:-56023014 None:intergenic
CTTAAAACATCAATTGCTTG+AGG 0.525457 5.1:-56022564 None:intergenic
AGCTAATTCTAATAATCTAC+GGG 0.525644 5.1:-56022475 None:intergenic
TTGAGGATTGGAAGGTTGGG+TGG 0.527312 5.1:+56023040 MS.gene35899:CDS
TTAAACATGATTATATAACT+TGG 0.531569 5.1:+56022679 MS.gene35899:CDS
CCTTCATAGTCACAGAAGAA+TGG 0.537564 5.1:+56021466 MS.gene35899:CDS
GGTTGATGTGGCCGCGACCT+GGG 0.543493 5.1:-56021389 None:intergenic
CAAATCAATGAAATTGCGAA+TGG 0.547383 5.1:+56022771 MS.gene35899:CDS
GGGAACTACGTTTGGAATGG+TGG 0.550077 5.1:-56021544 None:intergenic
TGACTAAAATAAGGTATGGT+AGG 0.550916 5.1:-56022621 None:intergenic
TAAGAAGAGATGAAATTGCT+AGG 0.556457 5.1:+56023097 MS.gene35899:CDS
GAATAGTAAGTATATAGTTG+AGG 0.557074 5.1:+56023023 MS.gene35899:CDS
GTATATAGTTGAGGATTGGA+AGG 0.557301 5.1:+56023032 MS.gene35899:CDS
GCCGTGACTAAAATAAGGTA+TGG 0.560100 5.1:-56022625 None:intergenic
TTGCCTCGACCTTCTTCGGA+GGG 0.564321 5.1:-56021564 None:intergenic
CTCCACTTGCAACTGCACCT+TGG 0.566000 5.1:-56023200 None:intergenic
GGCTCAAGTTCATATATGGA+AGG 0.573714 5.1:-56022543 None:intergenic
GGAGGGAACTACGTTTGGAA+TGG 0.580154 5.1:-56021547 None:intergenic
GGTTCCTCATTGGGTTGATG+TGG 0.580770 5.1:-56021401 None:intergenic
GACATATAGAACAGAACCAA+AGG 0.583623 5.1:-56022715 None:intergenic
ATCTTGGTTGGTGCTTAGAG+AGG 0.584062 5.1:-56022655 None:intergenic
CTATCATGTATAATCACACT+CGG 0.585298 5.1:-56021669 None:intergenic
GCGAATGGTTTGCGCGAAAG+TGG 0.587045 5.1:+56022786 MS.gene35899:CDS
ACATATAGAACAGAACCAAA+GGG 0.592505 5.1:-56022714 None:intergenic
GTTCCCTCCGAAGAAGGTCG+AGG 0.594862 5.1:+56021561 MS.gene35899:CDS
GCCGCGACCTGGGTATGGTA+CGG 0.595928 5.1:-56021379 None:intergenic
TGGTGCTTAGAGAGGCACTT+TGG 0.597056 5.1:-56022647 None:intergenic
ATGATGAAGTGAAGAAAATG+AGG 0.599887 5.1:+56023148 MS.gene35899:CDS
TTTGCCTCGACCTTCTTCGG+AGG 0.601667 5.1:-56021565 None:intergenic
TTGGTCCATCATTATTGGAG+AGG 0.607037 5.1:-56022995 None:intergenic
TGCCAAGGTGCAGTTGCAAG+TGG 0.608047 5.1:+56023198 MS.gene35899:CDS
TCTGTTCTATATGTCTCACA+AGG 0.608612 5.1:+56022723 MS.gene35899:CDS
TAGCTCTGAATAACATACCA+TGG 0.609800 5.1:+56022493 MS.gene35899:CDS
GCCGTACCATACCCAGGTCG+CGG 0.613664 5.1:+56021378 MS.gene35899:CDS
TACGGCTACTACGTGAGTGG+TGG 0.618240 5.1:-56021361 None:intergenic
CAAGGTGCAGTTGCAAGTGG+AGG 0.622021 5.1:+56023201 MS.gene35899:CDS
TGGAGATTAAGAGCTTGCAT+AGG 0.622718 5.1:-56021422 None:intergenic
GCTCAAGTTCATATATGGAA+GGG 0.622979 5.1:-56022542 None:intergenic
AACGTGTGGATTACATTCCG+GGG 0.625241 5.1:+56022400 MS.gene35899:CDS
TGCGTGGAGAAAGTTCTAAG+TGG 0.625771 5.1:+56022829 MS.gene35899:CDS
ACGGCTACTACGTGAGTGGT+GGG 0.632053 5.1:-56021360 None:intergenic
ACTAACCTGAAGCATTTACT+GGG 0.632218 5.1:-56021818 None:intergenic
GATCTTCAACAAATATGCCA+AGG 0.634612 5.1:+56023183 MS.gene35899:CDS
TGAAGGTTATGAAAATGTTG+AGG 0.642161 5.1:-56021449 None:intergenic
AAAGTGGTGTTAGATTCTTG+TGG 0.666670 5.1:+56022802 MS.gene35899:CDS
AGAACTTGGTGACAAACGTG+TGG 0.672858 5.1:+56022386 MS.gene35899:intron
GCTACTACGTGAGTGGTGGG+TGG 0.675528 5.1:-56021357 None:intergenic
AGATTCTTGTGGATAATGCG+TGG 0.682535 5.1:+56022813 MS.gene35899:CDS
TGGTACGGCTACTACGTGAG+TGG 0.683850 5.1:-56021364 None:intergenic
GCGGCCACATCAACCCAATG+AGG 0.691436 5.1:+56021397 MS.gene35899:CDS
TAAGTGGAAAGATATTTGTG+GGG 0.693286 5.1:+56022845 MS.gene35899:CDS
GTAGTAGCCGTACCATACCC+AGG 0.710129 5.1:+56021372 MS.gene35899:CDS
CTGTTCTATATGTCTCACAA+GGG 0.733356 5.1:+56022724 MS.gene35899:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATCATAGTTTTTTTT+AGG - chr5.1:56022293-56022312 None:intergenic 10.0%
!!! TTCATTTTATTTATTTATGT+TGG + chr5.1:56021874-56021893 MS.gene35899:intron 10.0%
!! TTAAACATGATTATATAACT+TGG + chr5.1:56022679-56022698 MS.gene35899:CDS 15.0%
!!! TACTCTTTTTAATTTTGTAT+GGG + chr5.1:56022235-56022254 MS.gene35899:intron 15.0%
!!! TACTGTTTTTACTAAATTTA+AGG + chr5.1:56021846-56021865 MS.gene35899:intron 15.0%
!!! TTACTCTTTTTAATTTTGTA+TGG + chr5.1:56022234-56022253 MS.gene35899:intron 15.0%
!! ACTATATACTTACTATTCAA+AGG - chr5.1:56023021-56023040 None:intergenic 20.0%
!! ATGTAATATATTACCAAGAA+AGG - chr5.1:56023250-56023269 None:intergenic 20.0%
!! TATAATCATGTTTAACATCT+TGG - chr5.1:56022674-56022693 None:intergenic 20.0%
!!! AAAGGATTTCATGTTATTTT+CGG - chr5.1:56023232-56023251 None:intergenic 20.0%
!!! ACATGATAGTTATTTGTTTT+GGG + chr5.1:56021683-56021702 MS.gene35899:CDS 20.0%
!!! TACATGATAGTTATTTGTTT+TGG + chr5.1:56021682-56021701 MS.gene35899:CDS 20.0%
!!! TCATTTGGTAATTATAGTTT+AGG + chr5.1:56021923-56021942 MS.gene35899:intron 20.0%
!!! TTATGTTGGTATGTTTTTAT+GGG + chr5.1:56021888-56021907 MS.gene35899:intron 20.0%
!!! TTTATGTTGGTATGTTTTTA+TGG + chr5.1:56021887-56021906 MS.gene35899:intron 20.0%
!!! TTTCTTGGTAATATATTACA+TGG + chr5.1:56023249-56023268 MS.gene35899:CDS 20.0%
!!! TTTTGTTGTTTGTTTTTGTA+GGG - chr5.1:56021512-56021531 None:intergenic 20.0%
!!! TTTTTGTTGTTTGTTTTTGT+AGG - chr5.1:56021513-56021532 None:intergenic 20.0%
! AAATAGAGAGTTATAGCTTA+TGG + chr5.1:56021951-56021970 MS.gene35899:intron 25.0%
! AATAACATGAAATCCTTTCT+TGG + chr5.1:56023234-56023253 MS.gene35899:CDS 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr5.1:56022171-56022190 MS.gene35899:intron 25.0%
! AATAGAGAGTTATAGCTTAT+GGG + chr5.1:56021952-56021971 MS.gene35899:intron 25.0%
! ACTATAATTACCAAATGAAG+AGG - chr5.1:56021921-56021940 None:intergenic 25.0%
! AGCTAATTCTAATAATCTAC+GGG - chr5.1:56022478-56022497 None:intergenic 25.0%
! GAATAGTAAGTATATAGTTG+AGG + chr5.1:56023023-56023042 MS.gene35899:CDS 25.0%
! GAGCTAATTCTAATAATCTA+CGG - chr5.1:56022479-56022498 None:intergenic 25.0%
! GTTAGAAGATTTATGGATTT+GGG + chr5.1:56023123-56023142 MS.gene35899:CDS 25.0%
! TATACTTACTATTCAAAGGT+TGG - chr5.1:56023017-56023036 None:intergenic 25.0%
! TCTATACCAATTTACACAAT+TGG + chr5.1:56022597-56022616 MS.gene35899:CDS 25.0%
! TGGTAATTATAGTTTAGGAA+TGG + chr5.1:56021928-56021947 MS.gene35899:intron 25.0%
! TGTTAGAAGATTTATGGATT+TGG + chr5.1:56023122-56023141 MS.gene35899:CDS 25.0%
! TTCTTATTGGTCAAAAACAT+TGG - chr5.1:56022159-56022178 None:intergenic 25.0%
!! TCTTAAACATTTTCGTCTTT+TGG + chr5.1:56021779-56021798 MS.gene35899:CDS 25.0%
!!! AACCACTTTTTGACAATTTT+TGG + chr5.1:56022074-56022093 MS.gene35899:intron 25.0%
!!! ATATTTTGACATCCATTTGA+TGG - chr5.1:56022212-56022231 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr5.1:56022172-56022191 None:intergenic 25.0%
AAAACATTGGAGAGAGAAAA+AGG - chr5.1:56022146-56022165 None:intergenic 30.0%
AAAGATATTTGTGGGGATAA+GGG + chr5.1:56022852-56022871 MS.gene35899:CDS 30.0%
ACATATAGAACAGAACCAAA+GGG - chr5.1:56022717-56022736 None:intergenic 30.0%
ATCATGTTTAACATCTTGGT+TGG - chr5.1:56022670-56022689 None:intergenic 30.0%
ATGATGAAGTGAAGAAAATG+AGG + chr5.1:56023148-56023167 MS.gene35899:CDS 30.0%
ATTATTGGAGAGGTAAGAAA+AGG - chr5.1:56022988-56023007 None:intergenic 30.0%
CAAATCAATGAAATTGCGAA+TGG + chr5.1:56022771-56022790 MS.gene35899:CDS 30.0%
CTAAGTGGAAAGATATTTGT+GGG + chr5.1:56022844-56022863 MS.gene35899:CDS 30.0%
CTATCATGTATAATCACACT+CGG - chr5.1:56021672-56021691 None:intergenic 30.0%
CTTAAAACATCAATTGCTTG+AGG - chr5.1:56022567-56022586 None:intergenic 30.0%
GAATCAAGTAGTTTCTCAAA+TGG - chr5.1:56021636-56021655 None:intergenic 30.0%
GTAAGTATATAGTTGAGGAT+TGG + chr5.1:56023028-56023047 MS.gene35899:CDS 30.0%
GTCCAAAAATTGTCAAAAAG+TGG - chr5.1:56022079-56022098 None:intergenic 30.0%
TAAATTGTTGCAACAGAACT+TGG + chr5.1:56022372-56022391 MS.gene35899:intron 30.0%
TAAGAAGAGATGAAATTGCT+AGG + chr5.1:56023097-56023116 MS.gene35899:CDS 30.0%
TAAGTGGAAAGATATTTGTG+GGG + chr5.1:56022845-56022864 MS.gene35899:CDS 30.0%
TATGAAAATGTTGAGGTTGT+TGG - chr5.1:56021445-56021464 None:intergenic 30.0%
TCTAAGTGGAAAGATATTTG+TGG + chr5.1:56022843-56022862 MS.gene35899:CDS 30.0%
TGAAGGTTATGAAAATGTTG+AGG - chr5.1:56021452-56021471 None:intergenic 30.0%
TGACTAAAATAAGGTATGGT+AGG - chr5.1:56022624-56022643 None:intergenic 30.0%
TTTCGTGTATTTATCAGTTG+AGG + chr5.1:56022015-56022034 MS.gene35899:intron 30.0%
!! TAGGCTTGTTAGAAGATTTA+TGG + chr5.1:56023116-56023135 MS.gene35899:CDS 30.0%
!! TTTCGTCTTTTGGAGAAAAA+TGG + chr5.1:56021789-56021808 MS.gene35899:CDS 30.0%
!!! ACCATACCTTATTTTAGTCA+CGG + chr5.1:56022624-56022643 MS.gene35899:CDS 30.0%
AAGATATTTGTGGGGATAAG+GGG + chr5.1:56022853-56022872 MS.gene35899:CDS 35.0%
ACTATGCATCAACACTCAAT+TGG - chr5.1:56022899-56022918 None:intergenic 35.0%
CATCGTGAAGTTGAAAATCT+TGG - chr5.1:56022443-56022462 None:intergenic 35.0%
CTGTTCTATATGTCTCACAA+GGG + chr5.1:56022724-56022743 MS.gene35899:CDS 35.0%
GAAAGATATTTGTGGGGATA+AGG + chr5.1:56022851-56022870 MS.gene35899:CDS 35.0%
GACATATAGAACAGAACCAA+AGG - chr5.1:56022718-56022737 None:intergenic 35.0%
GATCTTCAACAAATATGCCA+AGG + chr5.1:56023183-56023202 MS.gene35899:CDS 35.0%
GCTCAAGTTCATATATGGAA+GGG - chr5.1:56022545-56022564 None:intergenic 35.0%
GTAGGTCCAATTGTGTAAAT+TGG - chr5.1:56022606-56022625 None:intergenic 35.0%
GTATATAGTTGAGGATTGGA+AGG + chr5.1:56023032-56023051 MS.gene35899:CDS 35.0%
GTGTATTTATCAGTTGAGGT+TGG + chr5.1:56022019-56022038 MS.gene35899:intron 35.0%
TATTGTGCTTTCTTCATCCA+TGG - chr5.1:56022513-56022532 None:intergenic 35.0%
TCAACAAAGTTGCCATCAAA+TGG + chr5.1:56022197-56022216 MS.gene35899:intron 35.0%
TCTGTTCTATATGTCTCACA+AGG + chr5.1:56022723-56022742 MS.gene35899:CDS 35.0%
TCTTACCTCTCCAATAATGA+TGG + chr5.1:56022990-56023009 MS.gene35899:CDS 35.0%
TGAAGCTGTTGCTACTAAAA+TGG + chr5.1:56021605-56021624 MS.gene35899:CDS 35.0%
TTACAAGAGTTGCGAATAAG+AGG + chr5.1:56021706-56021725 MS.gene35899:CDS 35.0%
TTGAGGCTCAAGTTCATATA+TGG - chr5.1:56022550-56022569 None:intergenic 35.0%
! AAAGGTTGGTCCATCATTAT+TGG - chr5.1:56023003-56023022 None:intergenic 35.0%
! AAAGTGGTGTTAGATTCTTG+TGG + chr5.1:56022802-56022821 MS.gene35899:CDS 35.0%
! AACTAACCTGAAGCATTTAC+TGG - chr5.1:56021822-56021841 None:intergenic 35.0%
! ACTAACCTGAAGCATTTACT+GGG - chr5.1:56021821-56021840 None:intergenic 35.0%
! ATAGTGCTATAGGTGGTTTT+TGG + chr5.1:56022914-56022933 MS.gene35899:intron 35.0%
! GCATATTTGTTGAAGATCTC+TGG - chr5.1:56023181-56023200 None:intergenic 35.0%
!! TAGCTCTGAATAACATACCA+TGG + chr5.1:56022493-56022512 MS.gene35899:CDS 35.0%
!!! ACTAGAGAAGGTTTGTTTTG+TGG + chr5.1:56022958-56022977 MS.gene35899:intron 35.0%
!!! GTTGTTTGTTTTTGTAGGGT+CGG - chr5.1:56021508-56021527 None:intergenic 35.0%
AGATTCTTGTGGATAATGCG+TGG + chr5.1:56022813-56022832 MS.gene35899:CDS 40.0%
ATAGTTGAGGATTGGAAGGT+TGG + chr5.1:56023036-56023055 MS.gene35899:CDS 40.0%
CCATTCTTCTGTGACTATGA+AGG - chr5.1:56021469-56021488 None:intergenic 40.0%
CCTTCATAGTCACAGAAGAA+TGG + chr5.1:56021466-56021485 MS.gene35899:CDS 40.0%
CTTTGGCCGTGACTAAAATA+AGG - chr5.1:56022633-56022652 None:intergenic 40.0%
GATTACCCAGTAAATGCTTC+AGG + chr5.1:56021813-56021832 MS.gene35899:CDS 40.0%
GCCGTGACTAAAATAAGGTA+TGG - chr5.1:56022628-56022647 None:intergenic 40.0%
GGCTCAAGTTCATATATGGA+AGG - chr5.1:56022546-56022565 None:intergenic 40.0%
GGGTTAAGATCCTCTTCATT+TGG + chr5.1:56021908-56021927 MS.gene35899:intron 40.0%
TAGTTGAGGATTGGAAGGTT+GGG + chr5.1:56023037-56023056 MS.gene35899:CDS 40.0%
TGGAGATTAAGAGCTTGCAT+AGG - chr5.1:56021425-56021444 None:intergenic 40.0%
TGGCTAGATAATCAACCCTT+TGG + chr5.1:56022699-56022718 MS.gene35899:CDS 40.0%
TTGATGCATAGTGCTATAGG+TGG + chr5.1:56022907-56022926 MS.gene35899:intron 40.0%
TTGGTCCATCATTATTGGAG+AGG - chr5.1:56022998-56023017 None:intergenic 40.0%
! AAACGTGTGGATTACATTCC+GGG + chr5.1:56022399-56022418 MS.gene35899:CDS 40.0%
! ATGTTCATGTTGCGTCGTTT+TGG + chr5.1:56021730-56021749 MS.gene35899:CDS 40.0%
! CAAACGTGTGGATTACATTC+CGG + chr5.1:56022398-56022417 MS.gene35899:CDS 40.0%
! CTCACAAGGGAGTTTTCTTT+CGG + chr5.1:56022737-56022756 MS.gene35899:CDS 40.0%
! GTGTTGATGCATAGTGCTAT+AGG + chr5.1:56022904-56022923 MS.gene35899:intron 40.0%
!!! ATAAGGGGTTTGTTTTGCCA+TGG + chr5.1:56022868-56022887 MS.gene35899:intron 40.0%
!!! GTGGTTTTTGGTCACATTGT+GGG + chr5.1:56022926-56022945 MS.gene35899:intron 40.0%
ACACTCAATTGGTCACACCA+TGG - chr5.1:56022888-56022907 None:intergenic 45.0%
AGACGAATTGATGAGTTCCC+CGG - chr5.1:56022420-56022439 None:intergenic 45.0%
AGCTTGCATAGGTTCCTCAT+TGG - chr5.1:56021414-56021433 None:intergenic 45.0%
ATCTTTGCCTCGACCTTCTT+CGG - chr5.1:56021571-56021590 None:intergenic 45.0%
GCTTGCATAGGTTCCTCATT+GGG - chr5.1:56021413-56021432 None:intergenic 45.0%
GGGTGGAATTCAACTAGAGA+AGG + chr5.1:56022946-56022965 MS.gene35899:intron 45.0%
! AACGTGTGGATTACATTCCG+GGG + chr5.1:56022400-56022419 MS.gene35899:CDS 45.0%
! AGAACTTGGTGACAAACGTG+TGG + chr5.1:56022386-56022405 MS.gene35899:intron 45.0%
! ATCTTGGTTGGTGCTTAGAG+AGG - chr5.1:56022658-56022677 None:intergenic 45.0%
!! TGCGTGGAGAAAGTTCTAAG+TGG + chr5.1:56022829-56022848 MS.gene35899:CDS 45.0%
!!! GGTGGTTTTTGGTCACATTG+TGG + chr5.1:56022925-56022944 MS.gene35899:intron 45.0%
!!! GTTTTTGGTCACATTGTGGG+TGG + chr5.1:56022929-56022948 MS.gene35899:intron 45.0%
AACGTAGTTCCCTCCGAAGA+AGG + chr5.1:56021555-56021574 MS.gene35899:CDS 50.0%
AGAAGAAACGACGCCGACAT+AGG - chr5.1:56021756-56021775 None:intergenic 50.0%
GGAGGGAACTACGTTTGGAA+TGG - chr5.1:56021550-56021569 None:intergenic 50.0%
TCTTCGGAGGGAACTACGTT+TGG - chr5.1:56021555-56021574 None:intergenic 50.0%
TTGAGGATTGGAAGGTTGGG+TGG + chr5.1:56023040-56023059 MS.gene35899:CDS 50.0%
! GGGAACTACGTTTGGAATGG+TGG - chr5.1:56021547-56021566 None:intergenic 50.0%
!! GGTTCCTCATTGGGTTGATG+TGG - chr5.1:56021404-56021423 None:intergenic 50.0%
!! TGCGTCGTTTTGGCCTATGT+CGG + chr5.1:56021740-56021759 MS.gene35899:CDS 50.0%
!! TGGTGCTTAGAGAGGCACTT+TGG - chr5.1:56022650-56022669 None:intergenic 50.0%
!! TGTAGGGTCGGAGTTGATGA+GGG - chr5.1:56021496-56021515 None:intergenic 50.0%
!! TTGTAGGGTCGGAGTTGATG+AGG - chr5.1:56021497-56021516 None:intergenic 50.0%
ACGGCTACTACGTGAGTGGT+GGG - chr5.1:56021363-56021382 None:intergenic 55.0%
CAAGGTGCAGTTGCAAGTGG+AGG + chr5.1:56023201-56023220 MS.gene35899:CDS 55.0%
CTCCACTTGCAACTGCACCT+TGG - chr5.1:56023203-56023222 None:intergenic 55.0%
GTAGTAGCCGTACCATACCC+AGG + chr5.1:56021372-56021391 MS.gene35899:CDS 55.0%
TACGGCTACTACGTGAGTGG+TGG - chr5.1:56021364-56021383 None:intergenic 55.0%
TGCCAAGGTGCAGTTGCAAG+TGG + chr5.1:56023198-56023217 MS.gene35899:CDS 55.0%
TGGTACGGCTACTACGTGAG+TGG - chr5.1:56021367-56021386 None:intergenic 55.0%
TTGCCTCGACCTTCTTCGGA+GGG - chr5.1:56021567-56021586 None:intergenic 55.0%
TTGGAAGGTTGGGTGGAGAG+TGG + chr5.1:56023047-56023066 MS.gene35899:CDS 55.0%
TTTGCCTCGACCTTCTTCGG+AGG - chr5.1:56021568-56021587 None:intergenic 55.0%
! GCGAATGGTTTGCGCGAAAG+TGG + chr5.1:56022786-56022805 MS.gene35899:CDS 55.0%
GCGGCCACATCAACCCAATG+AGG + chr5.1:56021397-56021416 MS.gene35899:CDS 60.0%
GGTTGGGTGGAGAGTGGAGA+AGG + chr5.1:56023053-56023072 MS.gene35899:CDS 60.0%
GTGGGTGGAGGAGGATTTGG+AGG - chr5.1:56021345-56021364 None:intergenic 60.0%
GTTCCCTCCGAAGAAGGTCG+AGG + chr5.1:56021561-56021580 MS.gene35899:CDS 60.0%
TGGGTGGAGAGTGGAGAAGG+AGG + chr5.1:56023056-56023075 MS.gene35899:CDS 60.0%
! GCTACTACGTGAGTGGTGGG+TGG - chr5.1:56021360-56021379 None:intergenic 60.0%
!! ACTACGTGAGTGGTGGGTGG+AGG - chr5.1:56021357-56021376 None:intergenic 60.0%
!! GTGGTGGGTGGAGGAGGATT+TGG - chr5.1:56021348-56021367 None:intergenic 60.0%
ATGTGGCCGCGACCTGGGTA+TGG - chr5.1:56021387-56021406 None:intergenic 65.0%
GCCGCGACCTGGGTATGGTA+CGG - chr5.1:56021382-56021401 None:intergenic 65.0%
GCCGTACCATACCCAGGTCG+CGG + chr5.1:56021378-56021397 MS.gene35899:CDS 65.0%
! GGTTGATGTGGCCGCGACCT+GGG - chr5.1:56021392-56021411 None:intergenic 65.0%
!! ACGTGAGTGGTGGGTGGAGG+AGG - chr5.1:56021354-56021373 None:intergenic 65.0%
!! GGGTTGATGTGGCCGCGACC+TGG - chr5.1:56021393-56021412 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 56021336 56023284 56021336 ID=MS.gene35899
chr5.1 mRNA 56021336 56023284 56021336 ID=MS.gene35899.t1;Parent=MS.gene35899
chr5.1 exon 56021336 56021834 56021336 ID=MS.gene35899.t1.exon1;Parent=MS.gene35899.t1
chr5.1 CDS 56021336 56021834 56021336 ID=cds.MS.gene35899.t1;Parent=MS.gene35899.t1
chr5.1 exon 56022388 56022874 56022388 ID=MS.gene35899.t1.exon2;Parent=MS.gene35899.t1
chr5.1 CDS 56022388 56022874 56022388 ID=cds.MS.gene35899.t1;Parent=MS.gene35899.t1
chr5.1 exon 56022963 56023284 56022963 ID=MS.gene35899.t1.exon3;Parent=MS.gene35899.t1
chr5.1 CDS 56022963 56023284 56022963 ID=cds.MS.gene35899.t1;Parent=MS.gene35899.t1
Gene Sequence

>MS.gene35899

ATGGAACCTCCAAATCCTCCTCCACCCACCACTCACGTAGTAGCCGTACCATACCCAGGTCGCGGCCACATCAACCCAATGAGGAACCTATGCAAGCTCTTAATCTCCAACAACCTCAACATTTTCATAACCTTCATAGTCACAGAAGAATGGTTCACCCTCATCAACTCCGACCCTACAAAAACAAACAACAAAAACATCAAATTTGCCACCATTCCAAACGTAGTTCCCTCCGAAGAAGGTCGAGGCAAAGATTTTCTTAATTTTTTTGAAGCTGTTGCTACTAAAATGGAAGAGCCATTTGAGAAACTACTTGATTCTTTTGAGACAGTGCCGAGTGTGATTATACATGATAGTTATTTGTTTTGGGTTACAAGAGTTGCGAATAAGAGGAATGTTCATGTTGCGTCGTTTTGGCCTATGTCGGCGTCGTTTCTTCTTGTTCTTAAACATTTTCGTCTTTTGGAGAAAAATGGTGATTACCCAGTAAATGCTTCAGGTTAGTTACTTTACTGTTTTTACTAAATTTAAGGTACTTTTCATTTTATTTATTTATGTTGGTATGTTTTTATGGGTTAAGATCCTCTTCATTTGGTAATTATAGTTTAGGAATGGAAATAGAGAGTTATAGCTTATGGGTTAAATCGATGTTTTATTCGACACATGATGTATATTTGCTTTTCGTGTATTTATCAGTTGAGGTTGGTCTTATTTTTAATTGAGAAATGATATTTTGACAACCACTTTTTGACAATTTTTGGACAACTTTCTCTCTCATACTCACATGATGTTGTTATCATCTCTCTTCCTTTTTCTCTCTCCAATGTTTTTGACCAATAAGAAGTGAGAAAAACAAGGTTGTCAACAAAGTTGCCATCAAATGGATGTCAAAATATCATTACTCTTTTTAATTTTGTATGGGATATGTCTCTTCTATTGTTTAATGTAATATTGCCTAAAAAAAACTATGATAATAAACACAATTTTTACATTAGAATATTGTTTGTAAACATTTTTAAGTGTTTTGTGTGTTGCTTAAATTGTTGCAACAGAACTTGGTGACAAACGTGTGGATTACATTCCGGGGAACTCATCAATTCGTCTCCAAGATTTTCAACTTCACGATGCAAGCTTACGCACCCGTAGATTATTAGAATTAGCTCTGAATAACATACCATGGATGAAGAAAGCACAATATCTATTATTCCCTTCCATATATGAACTTGAGCCTCAAGCAATTGATGTTTTAAGAGAAGAATTTTCTATACCAATTTACACAATTGGACCTACCATACCTTATTTTAGTCACGGCCAAAGTGCCTCTCTAAGCACCAACCAAGATGTTAAACATGATTATATAACTTGGCTAGATAATCAACCCTTTGGTTCTGTTCTATATGTCTCACAAGGGAGTTTTCTTTCGGTTTCAAGTCAACAAATCAATGAAATTGCGAATGGTTTGCGCGAAAGTGGTGTTAGATTCTTGTGGATAATGCGTGGAGAAAGTTCTAAGTGGAAAGATATTTGTGGGGATAAGGGGTTTGTTTTGCCATGGTGTGACCAATTGAGTGTTGATGCATAGTGCTATAGGTGGTTTTTGGTCACATTGTGGGTGGAATTCAACTAGAGAAGGTTTGTTTTGTGGTGTGCCTTTTCTTACCTCTCCAATAATGATGGACCAACCTTTGAATAGTAAGTATATAGTTGAGGATTGGAAGGTTGGGTGGAGAGTGGAGAAGGAGGTTAAAGATGATGTTTTGATAAGAAGAGATGAAATTGCTAGGCTTGTTAGAAGATTTATGGATTTGGGTGATGATGAAGTGAAGAAAATGAGGAAAAGAGCCAGAGATCTTCAACAAATATGCCAAGGTGCAGTTGCAAGTGGAGGATCATCCGAAAATAACATGAAATCCTTTCTTGGTAATATATTACATGGATTCAAACCATAG
Protein sequence

>MS.gene35899.t1

MEPPNPPPPTTHVVAVPYPGRGHINPMRNLCKLLISNNLNIFITFIVTEEWFTLINSDPTKTNNKNIKFATIPNVVPSEEGRGKDFLNFFEAVATKMEEPFEKLLDSFETVPSVIIHDSYLFWVTRVANKRNVHVASFWPMSASFLLVLKHFRLLEKNGDYPVNASELGDKRVDYIPGNSSIRLQDFQLHDASLRTRRLLELALNNIPWMKKAQYLLFPSIYELEPQAIDVLREEFSIPIYTIGPTIPYFSHGQSASLSTNQDVKHDYITWLDNQPFGSVLYVSQGSFLSVSSQQINEIANGLRESGVRFLWIMRGESSKWKDICGDKGEGLFCGVPFLTSPIMMDQPLNSKYIVEDWKVGWRVEKEVKDDVLIRRDEIARLVRRFMDLGDDEVKKMRKRARDLQQICQGAVASGGSSENNMKSFLGNILHGFKP