Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35934.t1 | XP_003597016.2 | 99.2 | 247 | 2 | 0 | 1 | 247 | 7 | 253 | 6.20E-125 | 456.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35934.t1 | Q8VZU2 | 64.9 | 242 | 82 | 1 | 6 | 247 | 10 | 248 | 6.4e-78 | 292.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35934.t1 | A0A072VC55 | 99.2 | 247 | 2 | 0 | 1 | 247 | 7 | 253 | 4.5e-125 | 456.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene35934 | 0.850687 | 1.45E-60 | -1.69E-46 |
| MS.gene049368 | MS.gene35934 | 0.82921 | 5.85E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene35934 | 0.808796 | 2.60E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene35934 | 0.802298 | 6.00E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene35934 | 0.838407 | 2.93E-57 | -1.69E-46 |
| MS.gene049983 | MS.gene35934 | 0.828633 | 8.07E-55 | -1.69E-46 |
| MS.gene050224 | MS.gene35934 | 0.811105 | 8.27E-51 | -1.69E-46 |
| MS.gene050359 | MS.gene35934 | 0.845591 | 3.69E-59 | -1.69E-46 |
| MS.gene050414 | MS.gene35934 | 0.804063 | 2.59E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene35934 | 0.806167 | 9.38E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene35934 | 0.810559 | 1.09E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene35934 | 0.821896 | 3.16E-53 | -1.69E-46 |
| MS.gene050931 | MS.gene35934 | 0.814864 | 1.24E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene35934 | 0.818154 | 2.27E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene35934 | 0.819053 | 1.42E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene35934 | 0.823435 | 1.39E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene35934 | 0.816457 | 5.47E-52 | -1.69E-46 |
| MS.gene051831 | MS.gene35934 | 0.813684 | 2.26E-51 | -1.69E-46 |
| MS.gene051852 | MS.gene35934 | 0.818905 | 1.54E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene35934 | 0.801652 | 8.14E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene35934 | 0.80239 | 5.74E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene35934 | 0.822202 | 2.69E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene35934 | 0.872677 | 2.65E-67 | -1.69E-46 |
| MS.gene052463 | MS.gene35934 | 0.836274 | 1.03E-56 | -1.69E-46 |
| MS.gene052516 | MS.gene35934 | 0.832343 | 9.98E-56 | -1.69E-46 |
| MS.gene052533 | MS.gene35934 | 0.848275 | 6.80E-60 | -1.69E-46 |
| MS.gene052609 | MS.gene35934 | 0.856594 | 2.89E-62 | -1.69E-46 |
| MS.gene052932 | MS.gene35934 | 0.818001 | 2.46E-52 | -1.69E-46 |
| MS.gene053079 | MS.gene35934 | 0.834691 | 2.59E-56 | -1.69E-46 |
| MS.gene053143 | MS.gene35934 | 0.837714 | 4.42E-57 | -1.69E-46 |
| MS.gene053456 | MS.gene35934 | 0.808794 | 2.60E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene35934 | 0.804698 | 1.91E-49 | -1.69E-46 |
| MS.gene053726 | MS.gene35934 | 0.807053 | 6.10E-50 | -1.69E-46 |
| MS.gene054004 | MS.gene35934 | 0.809359 | 1.97E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene35934 | 0.805498 | 1.30E-49 | -1.69E-46 |
| MS.gene054824 | MS.gene35934 | 0.808064 | 3.72E-50 | -1.69E-46 |
| MS.gene054943 | MS.gene35934 | 0.808208 | 3.47E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene35934 | 0.807536 | 4.82E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene35934 | 0.828664 | 7.93E-55 | -1.69E-46 |
| MS.gene055386 | MS.gene35934 | 0.814918 | 1.21E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene35934 | 0.80622 | 9.14E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene35934 | 0.881506 | 2.27E-70 | -1.69E-46 |
| MS.gene055864 | MS.gene35934 | 0.818212 | 2.21E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene35934 | 0.807131 | 5.87E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene35934 | 0.852998 | 3.19E-61 | -1.69E-46 |
| MS.gene056308 | MS.gene35934 | 0.832316 | 1.01E-55 | -1.69E-46 |
| MS.gene056390 | MS.gene35934 | 0.812552 | 4.00E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene35934 | 0.81111 | 8.25E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene35934 | 0.854977 | 8.59E-62 | -1.69E-46 |
| MS.gene056787 | MS.gene35934 | 0.812528 | 4.05E-51 | -1.69E-46 |
| MS.gene056831 | MS.gene35934 | 0.822805 | 1.95E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene35934 | 0.80188 | 7.31E-49 | -1.69E-46 |
| MS.gene056881 | MS.gene35934 | 0.811432 | 7.02E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene35934 | 0.835366 | 1.75E-56 | -1.69E-46 |
| MS.gene057102 | MS.gene35934 | 0.812343 | 4.45E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene35934 | 0.801411 | 9.12E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene35934 | 0.812703 | 3.71E-51 | -1.69E-46 |
| MS.gene058330 | MS.gene35934 | 0.801853 | 7.40E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene35934 | 0.804236 | 2.38E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene35934 | 0.811383 | 7.20E-51 | -1.69E-46 |
| MS.gene058649 | MS.gene35934 | 0.80208 | 6.65E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene35934 | 0.806175 | 9.35E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene35934 | 0.816065 | 6.70E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene35934 | 0.807923 | 3.99E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene35934 | 0.80307 | 4.16E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene35934 | 0.816305 | 5.92E-52 | -1.69E-46 |
| MS.gene059634 | MS.gene35934 | 0.816081 | 6.65E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene35934 | -0.800617 | 1.33E-48 | -1.69E-46 |
| MS.gene059965 | MS.gene35934 | 0.848719 | 5.12E-60 | -1.69E-46 |
| MS.gene060637 | MS.gene35934 | 0.802162 | 6.39E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene35934 | 0.823038 | 1.72E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene35934 | 0.837456 | 5.14E-57 | -1.69E-46 |
| MS.gene060935 | MS.gene35934 | 0.820833 | 5.57E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene35934 | 0.835766 | 1.39E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene35934 | 0.838676 | 2.50E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35934.t1 | MTR_2g088700 | 99.190 | 247 | 2 | 0 | 1 | 247 | 7 | 253 | 0.0 | 499 |
| MS.gene35934.t1 | MTR_2g088700 | 99.190 | 247 | 2 | 0 | 1 | 247 | 7 | 253 | 0.0 | 498 |
| MS.gene35934.t1 | MTR_6g028140 | 61.207 | 232 | 89 | 1 | 16 | 247 | 18 | 248 | 2.28e-98 | 289 |
| MS.gene35934.t1 | MTR_4g090900 | 49.309 | 217 | 110 | 0 | 31 | 247 | 32 | 248 | 4.49e-72 | 223 |
| MS.gene35934.t1 | MTR_2g012270 | 48.387 | 217 | 112 | 0 | 31 | 247 | 31 | 247 | 2.72e-70 | 218 |
| MS.gene35934.t1 | MTR_1g056550 | 44.186 | 215 | 120 | 0 | 33 | 247 | 41 | 255 | 3.62e-61 | 194 |
| MS.gene35934.t1 | MTR_1g056560 | 44.700 | 217 | 120 | 0 | 31 | 247 | 43 | 259 | 1.36e-60 | 194 |
| MS.gene35934.t1 | MTR_5g012010 | 44.628 | 242 | 122 | 4 | 10 | 245 | 29 | 264 | 6.93e-60 | 192 |
| MS.gene35934.t1 | MTR_7g106420 | 40.465 | 215 | 128 | 0 | 33 | 247 | 28 | 242 | 6.12e-52 | 171 |
| MS.gene35934.t1 | MTR_5g020670 | 35.498 | 231 | 137 | 4 | 17 | 245 | 25 | 245 | 9.64e-38 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35934.t1 | AT3G03800 | 63.248 | 234 | 85 | 1 | 13 | 246 | 16 | 248 | 1.70e-102 | 300 |
| MS.gene35934.t1 | AT3G03800 | 63.248 | 234 | 85 | 1 | 13 | 246 | 16 | 248 | 1.70e-102 | 300 |
| MS.gene35934.t1 | AT5G08080 | 65.289 | 242 | 81 | 1 | 6 | 247 | 10 | 248 | 1.68e-98 | 290 |
| MS.gene35934.t1 | AT5G08080 | 65.289 | 242 | 81 | 1 | 6 | 247 | 10 | 248 | 1.68e-98 | 290 |
| MS.gene35934.t1 | AT5G08080 | 61.660 | 253 | 83 | 2 | 6 | 247 | 10 | 259 | 1.39e-95 | 283 |
| MS.gene35934.t1 | AT1G11250 | 46.552 | 232 | 118 | 1 | 16 | 247 | 17 | 242 | 1.49e-69 | 216 |
| MS.gene35934.t1 | AT5G08080 | 61.856 | 194 | 71 | 1 | 6 | 199 | 10 | 200 | 9.32e-69 | 211 |
| MS.gene35934.t1 | AT5G08080 | 61.856 | 194 | 71 | 1 | 6 | 199 | 10 | 200 | 9.32e-69 | 211 |
| MS.gene35934.t1 | AT1G61290 | 42.276 | 246 | 136 | 1 | 2 | 247 | 8 | 247 | 2.72e-64 | 202 |
| MS.gene35934.t1 | AT1G61290 | 42.276 | 246 | 136 | 1 | 2 | 247 | 8 | 247 | 2.72e-64 | 202 |
| MS.gene35934.t1 | AT3G11820 | 43.033 | 244 | 133 | 1 | 10 | 247 | 15 | 258 | 3.94e-63 | 201 |
| MS.gene35934.t1 | AT3G11820 | 45.249 | 221 | 121 | 0 | 27 | 247 | 7 | 227 | 6.20e-63 | 199 |
| MS.gene35934.t1 | AT4G03330 | 44.248 | 226 | 125 | 1 | 22 | 246 | 24 | 249 | 1.47e-62 | 198 |
| MS.gene35934.t1 | AT3G52400 | 41.532 | 248 | 141 | 2 | 2 | 245 | 8 | 255 | 1.02e-57 | 187 |
| MS.gene35934.t1 | AT1G08560 | 38.696 | 230 | 135 | 3 | 17 | 245 | 30 | 254 | 1.37e-47 | 160 |
| MS.gene35934.t1 | AT2G18260 | 33.937 | 221 | 125 | 3 | 33 | 246 | 47 | 253 | 2.40e-36 | 130 |
| MS.gene35934.t1 | AT2G18260 | 33.937 | 221 | 125 | 3 | 33 | 246 | 47 | 253 | 2.40e-36 | 130 |
Find 0 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACTTATTTAAAAAGTATA+TGG | - | 15129:10944-10963 | MS.gene35934:intron | 10.0% |
| !! | AAAAATCACTTAACTATATA+CGG | + | 15129:11316-11335 | MS.gene35934:intergenic | 15.0% |
| !! | AAAGTTTAATTCAGAAAATT+TGG | - | 15129:11583-11602 | MS.gene35934:intron | 15.0% |
| !! | AAGTTTAATTCAGAAAATTT+GGG | - | 15129:11584-11603 | MS.gene35934:intron | 15.0% |
| !! | AATCTGAAAAATAATATGAT+AGG | + | 15129:11776-11795 | MS.gene35934:intergenic | 15.0% |
| !! | TGTTATATAGATTTCAAATA+CGG | - | 15129:10482-10501 | MS.gene35934:CDS | 15.0% |
| !!! | AATTTTACAAATTCAAATGT+TGG | + | 15129:9523-9542 | MS.gene35934:intergenic | 15.0% |
| !!! | TATTCATTTTTTTTCATAGT+AGG | - | 15129:11426-11445 | MS.gene35934:intron | 15.0% |
| !! | AAAAAAATACCAGTAAACTT+AGG | + | 15129:9865-9884 | MS.gene35934:intergenic | 20.0% |
| !! | AATATTTATCTAGTTGACAA+TGG | - | 15129:11725-11744 | MS.gene35934:intron | 20.0% |
| !! | TTCAATGTAATCATATGTAT+CGG | + | 15129:9434-9453 | MS.gene35934:intergenic | 20.0% |
| ! | AAAACTTCTTGATTTACATC+AGG | - | 15129:11675-11694 | MS.gene35934:intron | 25.0% |
| ! | AACACAGTTAACTTTATCAA+GGG | + | 15129:10904-10923 | MS.gene35934:intergenic | 25.0% |
| ! | ACGGATAAAAAATAGTTAAC+CGG | - | 15129:10501-10520 | MS.gene35934:CDS | 25.0% |
| ! | ATCACAAAGTTAAAAACACA+AGG | + | 15129:10979-10998 | MS.gene35934:intergenic | 25.0% |
| ! | ATTCATCTTGTATTCTTTGT+CGG | + | 15129:10832-10851 | MS.gene35934:intergenic | 25.0% |
| ! | ATTGAATATCCTAAGTTTAC+TGG | - | 15129:9853-9872 | MS.gene35934:CDS | 25.0% |
| ! | GCAAAAACAAAATGGTTATA+AGG | + | 15129:10000-10019 | MS.gene35934:intergenic | 25.0% |
| ! | TAAGTTTGGCAAAAACAAAA+TGG | + | 15129:10008-10027 | MS.gene35934:intergenic | 25.0% |
| ! | TCACAAAGTTAAAAACACAA+GGG | + | 15129:10978-10997 | MS.gene35934:intergenic | 25.0% |
| ! | TGAGATGATAAACATAAACT+TGG | + | 15129:10781-10800 | MS.gene35934:intergenic | 25.0% |
| ! | TTTAGTAACGGTTATAAGTT+TGG | + | 15129:10022-10041 | MS.gene35934:intergenic | 25.0% |
| !! | AATGGAAGCTTTTAATAAAC+AGG | - | 15129:9300-9319 | MS.gene35934:intron | 25.0% |
| !! | TTTTCAGATTTACCTTGATA+TGG | - | 15129:11786-11805 | MS.gene35934:CDS | 25.0% |
| !! | TTTTTCGTATTTTCATCTCA+TGG | - | 15129:11331-11350 | MS.gene35934:intron | 25.0% |
| !!! | TGCATAAGTTTTGGTTTAAT+TGG | - | 15129:11091-11110 | MS.gene35934:intron | 25.0% |
| AAACCAAAACTTATGCATAG+CGG | + | 15129:11088-11107 | MS.gene35933:intergenic | 30.0% | |
| AAATAGATGTGATGTCAGAA+TGG | + | 15129:10280-10299 | MS.gene35933:intergenic | 30.0% | |
| AATACAAGATGAATATCGTG+AGG | - | 15129:10838-10857 | MS.gene35934:intron | 30.0% | |
| ACACAGTTAACTTTATCAAG+GGG | + | 15129:10903-10922 | MS.gene35934:intergenic | 30.0% | |
| AGACAAGGTGATATTGAAAT+GGG | - | 15129:9244-9263 | MS.gene35934:CDS | 30.0% | |
| AGAGACAAAATCAATTCCAA+TGG | - | 15129:9693-9712 | MS.gene35934:intron | 30.0% | |
| ATTCTGCATAAAACATATCC+CGG | + | 15129:10523-10542 | MS.gene35934:intergenic | 30.0% | |
| CAACACAGTTAACTTTATCA+AGG | + | 15129:10905-10924 | MS.gene35934:intergenic | 30.0% | |
| CATATTTGAGTGATTTCCAT+TGG | + | 15129:9712-9731 | MS.gene35934:intergenic | 30.0% | |
| CATTGTAACAATACCTTTCA+TGG | + | 15129:10099-10118 | MS.gene35934:intergenic | 30.0% | |
| CGGATAAAAAATAGTTAACC+GGG | - | 15129:10502-10521 | MS.gene35934:CDS | 30.0% | |
| GAAAAGGATATTGATGAAGT+TGG | - | 15129:10367-10386 | MS.gene35934:intron | 30.0% | |
| GAAACTTCTAATTCGCATTA+TGG | + | 15129:11464-11483 | MS.gene35934:intergenic | 30.0% | |
| TAGACAAGGTGATATTGAAA+TGG | - | 15129:9243-9262 | MS.gene35934:CDS | 30.0% | |
| TATCAAAAAGAGGATGGAAA+AGG | - | 15129:10351-10370 | MS.gene35934:intron | 30.0% | |
| TGATTTACATCAGGTTTACT+TGG | - | 15129:11684-11703 | MS.gene35934:intron | 30.0% | |
| TGCTGATAAACAAATTGAGA+AGG | - | 15129:9906-9925 | MS.gene35934:CDS | 30.0% | |
| TTCATTATACCCTGTATGTT+TGG | + | 15129:9788-9807 | MS.gene35934:intergenic | 30.0% | |
| TTGAATGTAACAATCACGTT+TGG | - | 15129:9622-9641 | MS.gene35934:intron | 30.0% | |
| ! | CAATTTGTTTATCAGCATCT+TGG | + | 15129:9903-9922 | MS.gene35934:intergenic | 30.0% |
| ! | GCAAAAAGTGCATTTAGTAA+CGG | + | 15129:10034-10053 | MS.gene35934:intergenic | 30.0% |
| ! | TTAAAAGTGAGTTGAATGTG+AGG | - | 15129:9551-9570 | MS.gene35934:intron | 30.0% |
| !! | ATCTCTGAACTTTTTAGTCA+AGG | + | 15129:10700-10719 | MS.gene35934:intergenic | 30.0% |
| !! | TTACTAAATGCACTTTTTGC+AGG | - | 15129:10034-10053 | MS.gene35934:intron | 30.0% |
| !!! | TCATAAGATTTTGCTGTTAC+TGG | - | 15129:10166-10185 | MS.gene35934:intron | 30.0% |
| AAGTTAACTGTGTTGCACTA+TGG | - | 15129:10910-10929 | MS.gene35934:intron | 35.0% | |
| AAGTTGGAAAGATTGCACAT+GGG | - | 15129:10383-10402 | MS.gene35934:intron | 35.0% | |
| ACTGTGAAACCAAACATACA+GGG | - | 15129:9776-9795 | MS.gene35934:intron | 35.0% | |
| ATAAATCAAGTACCTGTCCT+CGG | + | 15129:11205-11224 | MS.gene35934:intergenic | 35.0% | |
| ATAGCTGAGAATGATGTAAG+AGG | + | 15129:10334-10353 | MS.gene35934:intergenic | 35.0% | |
| ATGTGATGTCAGAATGGAAA+AGG | + | 15129:10274-10293 | MS.gene35934:intergenic | 35.0% | |
| ATTCTTCAGTTACCGGAAAT+AGG | - | 15129:11010-11029 | MS.gene35934:intron | 35.0% | |
| CATTCTCAGCTATCAAAAAG+AGG | - | 15129:10341-10360 | MS.gene35934:CDS | 35.0% | |
| CTAAACAATAGACAAAAGCC+TGG | - | 15129:10543-10562 | MS.gene35934:intron | 35.0% | |
| GAAAAACAGCTTCTAGTGTT+AGG | + | 15129:10759-10778 | MS.gene35934:intergenic | 35.0% | |
| GTATAGATACACCTCAGATT+AGG | - | 15129:9367-9386 | MS.gene35934:CDS | 35.0% | |
| GTGGAAAGAAGAGTTATTAC+AGG | - | 15129:10863-10882 | MS.gene35934:intron | 35.0% | |
| GTTTACTTGGAAGAAGATCT+TGG | - | 15129:11697-11716 | MS.gene35934:intron | 35.0% | |
| TAAAGTTAACTGTGTGTGTC+TGG | - | 15129:9733-9752 | MS.gene35934:intron | 35.0% | |
| TACTGTGAAACCAAACATAC+AGG | - | 15129:9775-9794 | MS.gene35934:intron | 35.0% | |
| TCAATATCACCTTGTCTAGA+AGG | + | 15129:9241-9260 | MS.gene35934:intergenic | 35.0% | |
| TGACTTGATTCTTCAGTTAC+CGG | - | 15129:11003-11022 | MS.gene35934:intron | 35.0% | |
| TTTGTTAGTGAGGCTAATCA+TGG | - | 15129:9211-9230 | MS.gene35934:CDS | 35.0% | |
| ! | CAAAGAAGCAGTTCTGATAT+GGG | - | 15129:9277-9296 | MS.gene35934:intron | 35.0% |
| ! | TATCCGCTATGCATAAGTTT+TGG | - | 15129:11082-11101 | MS.gene35934:intron | 35.0% |
| ! | TCAAAGAAGCAGTTCTGATA+TGG | - | 15129:9276-9295 | MS.gene35934:intron | 35.0% |
| ! | TGTATGTTTGGTTTCACAGT+AGG | + | 15129:9776-9795 | MS.gene35934:intergenic | 35.0% |
| ! | TTGTTTCTTGAGCTTAAAGG+AGG | - | 15129:11389-11408 | MS.gene35934:intron | 35.0% |
| !! | GTGTTGTTTCTTGAGCTTAA+AGG | - | 15129:11386-11405 | MS.gene35934:intron | 35.0% |
| !!! | CGATTTGTTTTTTGCTTGTG+TGG | - | 15129:11537-11556 | MS.gene35934:intron | 35.0% |
| AGATGAATATCGTGAGGTTG+TGG | - | 15129:10844-10863 | MS.gene35934:intron | 40.0% | |
| AGTTGGAAAGATTGCACATG+GGG | - | 15129:10384-10403 | MS.gene35934:intron | 40.0% | |
| ATCAAACTCACCTCATCATC+TGG | + | 15129:11036-11055 | MS.gene35934:intergenic | 40.0% | |
| ATTGACCACCTGATAGAAAC+TGG | - | 15129:11137-11156 | MS.gene35934:CDS | 40.0% | |
| CAACTAAGACTGCCATATCA+AGG | + | 15129:11801-11820 | MS.gene35934:intergenic | 40.0% | |
| CACTGTTTCCAGTTTCTATC+AGG | + | 15129:11148-11167 | MS.gene35934:intergenic | 40.0% | |
| CATTCTTGCTCTGTCAATAC+CGG | + | 15129:10583-10602 | MS.gene35934:intergenic | 40.0% | |
| CTCAGCTATCAAAAAGAGGA+TGG | - | 15129:10345-10364 | MS.gene35934:CDS | 40.0% | |
| GAAGTTGGAAAGATTGCACA+TGG | - | 15129:10382-10401 | MS.gene35934:intron | 40.0% | |
| GTCAAGGAACTGCAATTTCA+AGG | + | 15129:10684-10703 | MS.gene35934:intergenic | 40.0% | |
| GTGTTTCAGACTAACATACC+TGG | + | 15129:10737-10756 | MS.gene35934:intergenic | 40.0% | |
| TCATCTCATGGACGAGATAT+TGG | - | 15129:11343-11362 | MS.gene35934:intron | 40.0% | |
| TGTTTCCAGTTTCTATCAGG+TGG | + | 15129:11145-11164 | MS.gene35934:intergenic | 40.0% | |
| TTTAGACAACATCGAAAGCC+AGG | - | 15129:11837-11856 | MS.gene35934:CDS | 40.0% | |
| ! | AAAGTGAGTTGAATGTGAGG+TGG | - | 15129:9554-9573 | MS.gene35934:intron | 40.0% |
| ! | AAGCAGTTCTGATATGGGAA+TGG | - | 15129:9282-9301 | MS.gene35934:intron | 40.0% |
| ! | ATATGTATCGGTGTCTTCGT+CGG | + | 15129:9422-9441 | MS.gene35934:intergenic | 40.0% |
| ! | CTGTTACTGGTTACTGAATC+AGG | - | 15129:10179-10198 | MS.gene35934:CDS | 40.0% |
| ! | CTTTTTGCAGGAAGCTAATG+AGG | - | 15129:10046-10065 | MS.gene35934:intron | 40.0% |
| ! | GAGCACTGTAGAAGAAATTC+AGG | - | 15129:11621-11640 | MS.gene35934:intron | 40.0% |
| !! | ACAAAAGCATCTGCCATGAA+AGG | - | 15129:10083-10102 | MS.gene35934:intron | 40.0% |
| !! | CAGAAAATTTGGGTTGTTGC+AGG | - | 15129:11594-11613 | MS.gene35934:intron | 40.0% |
| !!! | CTTTAGCTTTTGAAGTAGCG+CGG | + | 15129:9935-9954 | MS.gene35934:intergenic | 40.0% |
| AGATCTCATGACAGAGTTCC+AGG | - | 15129:10716-10735 | MS.gene35934:intron | 45.0% | |
| CATGGACAACCTTCTAGACA+AGG | - | 15129:9229-9248 | MS.gene35934:CDS | 45.0% | |
| CGCGCTACTTCAAAAGCTAA+AGG | - | 15129:9933-9952 | MS.gene35934:intron | 45.0% | |
| CTCATCATCTGGCCTATTTC+CGG | + | 15129:11025-11044 | MS.gene35934:intergenic | 45.0% | |
| TCATGGACGAGATATTGGTG+TGG | - | 15129:11348-11367 | MS.gene35934:intron | 45.0% | |
| ! | GCAGTCTTAGTTGATGCTCA+AGG | - | 15129:11808-11827 | MS.gene35934:CDS | 45.0% |
| !!! | TTTTCAAAATAAAAAAAATA+CGG | + | 15129:11242-11261 | MS.gene35934:intergenic | 5.0% |
| ACAAAAGCCTGGCTGTGAGA+AGG | - | 15129:10554-10573 | MS.gene35934:intron | 50.0% | |
| CAAAAGCCTGGCTGTGAGAA+GGG | - | 15129:10555-10574 | MS.gene35934:intron | 50.0% | |
| CAGCAGGCAATTCTTGAAGC+AGG | - | 15129:11179-11198 | MS.gene35934:intron | 50.0% | |
| CAGTGAGCAAATCTTCCAGC+AGG | - | 15129:11163-11182 | MS.gene35934:intron | 50.0% | |
| CATGATAGGTATCCGACACC+AGG | + | 15129:9398-9417 | MS.gene35934:intergenic | 50.0% | |
| CGAGATATTGGTGTGGTGAG+CGG | - | 15129:11355-11374 | MS.gene35934:intron | 50.0% | |
| CGGAAATAGGCCAGATGATG+AGG | - | 15129:11023-11042 | MS.gene35934:intron | 50.0% | |
| CTGCTTCAAGAATTGCCTGC+TGG | + | 15129:11181-11200 | MS.gene35934:intergenic | 50.0% | |
| GTGTCTTCGTCGGACATGAT+AGG | + | 15129:9412-9431 | MS.gene35934:intergenic | 50.0% | |
| TGTTCGTGTCTGTGCTGCAT+AGG | - | 15129:9490-9509 | MS.gene35934:intron | 50.0% | |
| ACCAGGACACGCCTAATCTG+AGG | + | 15129:9381-9400 | MS.gene35934:intergenic | 55.0% | |
| ACCTCAGATTAGGCGTGTCC+TGG | - | 15129:9377-9396 | MS.gene35934:CDS | 55.0% | |
| GATTAGGCGTGTCCTGGTGT+CGG | - | 15129:9383-9402 | MS.gene35934:CDS | 55.0% | |
| GCAATTCTTGAAGCAGGCCG+AGG | - | 15129:11185-11204 | MS.gene35934:intron | 55.0% | |
| TCTTGAAGCAGGCCGAGGAC+AGG | - | 15129:11190-11209 | MS.gene35934:intron | 60.0% | |
| ! | CCTGGCTGTGAGAAGGGCAC+CGG | - | 15129:10561-10580 | MS.gene35934:intron | 65.0% |
| CCGGTGCCCTTCTCACAGCC+AGG | + | 15129:10564-10583 | MS.gene35934:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15129 | gene | 9205 | 11858 | 9205 | ID=MS.gene35934 |
| 15129 | mRNA | 9205 | 11858 | 9205 | ID=MS.gene35934.t1;Parent=MS.gene35934 |
| 15129 | exon | 11742 | 11858 | 11742 | ID=MS.gene35934.t1.exon1;Parent=MS.gene35934.t1 |
| 15129 | CDS | 11742 | 11858 | 11742 | ID=cds.MS.gene35934.t1;Parent=MS.gene35934.t1 |
| 15129 | exon | 11109 | 11165 | 11109 | ID=MS.gene35934.t1.exon2;Parent=MS.gene35934.t1 |
| 15129 | CDS | 11109 | 11165 | 11109 | ID=cds.MS.gene35934.t1;Parent=MS.gene35934.t1 |
| 15129 | exon | 10959 | 11007 | 10959 | ID=MS.gene35934.t1.exon3;Parent=MS.gene35934.t1 |
| 15129 | CDS | 10959 | 11007 | 10959 | ID=cds.MS.gene35934.t1;Parent=MS.gene35934.t1 |
| 15129 | exon | 10625 | 10713 | 10625 | ID=MS.gene35934.t1.exon4;Parent=MS.gene35934.t1 |
| 15129 | CDS | 10625 | 10713 | 10625 | ID=cds.MS.gene35934.t1;Parent=MS.gene35934.t1 |
| 15129 | exon | 10450 | 10523 | 10450 | ID=MS.gene35934.t1.exon5;Parent=MS.gene35934.t1 |
| 15129 | CDS | 10450 | 10523 | 10450 | ID=cds.MS.gene35934.t1;Parent=MS.gene35934.t1 |
| 15129 | exon | 10326 | 10368 | 10326 | ID=MS.gene35934.t1.exon6;Parent=MS.gene35934.t1 |
| 15129 | CDS | 10326 | 10368 | 10326 | ID=cds.MS.gene35934.t1;Parent=MS.gene35934.t1 |
| 15129 | exon | 10179 | 10239 | 10179 | ID=MS.gene35934.t1.exon7;Parent=MS.gene35934.t1 |
| 15129 | CDS | 10179 | 10239 | 10179 | ID=cds.MS.gene35934.t1;Parent=MS.gene35934.t1 |
| 15129 | exon | 10019 | 10044 | 10019 | ID=MS.gene35934.t1.exon8;Parent=MS.gene35934.t1 |
| 15129 | CDS | 10019 | 10044 | 10019 | ID=cds.MS.gene35934.t1;Parent=MS.gene35934.t1 |
| 15129 | exon | 9852 | 9929 | 9852 | ID=MS.gene35934.t1.exon9;Parent=MS.gene35934.t1 |
| 15129 | CDS | 9852 | 9929 | 9852 | ID=cds.MS.gene35934.t1;Parent=MS.gene35934.t1 |
| 15129 | exon | 9367 | 9447 | 9367 | ID=MS.gene35934.t1.exon10;Parent=MS.gene35934.t1 |
| 15129 | CDS | 9367 | 9447 | 9367 | ID=cds.MS.gene35934.t1;Parent=MS.gene35934.t1 |
| 15129 | exon | 9205 | 9270 | 9205 | ID=MS.gene35934.t1.exon11;Parent=MS.gene35934.t1 |
| 15129 | CDS | 9205 | 9270 | 9205 | ID=cds.MS.gene35934.t1;Parent=MS.gene35934.t1 |
| Gene Sequence |
| Protein sequence |
