AlfalfaGEDB | MS.gene41693

M. sativa cultivar XinJiangDaYe / MS.gene41693

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF13041.9 PF13812.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41693.t1	XP_003624580.1	83.2	585	94	1	1	581	1	585	1.10E-172	616.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41693.t1	Q9LFQ4	65.0	237	81	1	88	324	88	322	1.2e-87	325.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41693.t1	G7KYE7	83.2	585	94	1	1	581	1	585	8.0e-173	616.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene41693	0.807126	5.89E-50	-1.69E-46
MS.gene049404	MS.gene41693	0.814713	1.34E-51	-1.69E-46
MS.gene050026	MS.gene41693	0.806792	6.93E-50	-1.69E-46
MS.gene051198	MS.gene41693	0.811653	6.29E-51	-1.69E-46
MS.gene051279	MS.gene41693	0.829084	6.27E-55	-1.69E-46
MS.gene051594	MS.gene41693	0.828729	7.64E-55	-1.69E-46
MS.gene051744	MS.gene41693	0.813869	2.06E-51	-1.69E-46
MS.gene052582	MS.gene41693	0.82885	7.15E-55	-1.69E-46
MS.gene052584	MS.gene41693	0.829223	5.81E-55	-1.69E-46
MS.gene052867	MS.gene41693	0.801681	8.03E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000626	MS.gene41693	PPI
MS.gene004676	MS.gene41693	PPI
MS.gene013771	MS.gene41693	PPI
MS.gene015655	MS.gene41693	PPI
MS.gene016068	MS.gene41693	PPI
MS.gene016071	MS.gene41693	PPI
MS.gene01997	MS.gene41693	PPI
MS.gene028001	MS.gene41693	PPI
MS.gene03180	MS.gene41693	PPI
MS.gene03182	MS.gene41693	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41693.t1	MTR_7g085100	95.385	585	23	1	1	581	1	585	0.0	1129
MS.gene41693.t1	MTR_8g098955	32.117	411	261	7	122	531	88	481	1.27e-69	233
MS.gene41693.t1	MTR_2g104640	33.750	400	246	4	130	514	79	474	3.23e-69	232
MS.gene41693.t1	MTR_2g060630	30.900	411	258	8	113	517	83	473	8.52e-68	228
MS.gene41693.t1	MTR_2g016740	30.602	415	280	4	96	507	17	426	1.41e-65	222
MS.gene41693.t1	MTR_2g016740	24.765	319	221	9	240	548	51	360	2.36e-22	100
MS.gene41693.t1	MTR_3g088505	30.275	436	287	6	94	521	28	454	1.12e-64	219
MS.gene41693.t1	MTR_3g088505	25.301	249	178	4	286	528	111	357	1.67e-18	89.0
MS.gene41693.t1	MTR_8g071300	29.224	438	297	5	83	512	67	499	1.40e-62	218
MS.gene41693.t1	MTR_1g086500	29.858	422	280	5	94	509	28	439	1.03e-61	213

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41693.t1	AT5G15010	59.491	511	193	5	72	581	75	572	0.0	631
MS.gene41693.t1	AT3G15200	33.406	458	287	5	76	531	70	511	3.78e-82	267
MS.gene41693.t1	AT1G80880	33.915	401	258	4	118	518	114	507	3.79e-82	267
MS.gene41693.t1	AT1G80880	33.915	401	258	4	118	518	114	507	3.79e-82	267
MS.gene41693.t1	AT1G80880	33.915	401	258	4	118	518	114	507	3.79e-82	267
MS.gene41693.t1	AT5G65820	29.885	435	294	4	77	508	68	494	1.50e-67	231
MS.gene41693.t1	AT3G49730	28.806	427	297	4	90	512	60	483	6.02e-65	224
MS.gene41693.t1	AT3G62470	29.437	462	310	6	54	507	86	539	1.73e-64	222
MS.gene41693.t1	AT3G62470	24.646	353	238	9	191	528	116	455	2.29e-26	114
MS.gene41693.t1	AT3G62470	24.252	301	217	7	223	517	184	479	7.50e-17	84.3

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Find 102 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAATATCACTCCTGAT+AGG	0.473881	7.2:-22561879	MS.gene41693:CDS
AAAGGATATGGAATGCAATG+AGG	0.611950	7.2:-22561492	MS.gene41693:CDS
AAAGTCTTCTAAACTTTATA+GGG	0.286305	7.2:-22561929	MS.gene41693:CDS
AACTATATCACAGTGATTGA+CGG	0.557118	7.2:+22562803	None:intergenic
AAGAATAATGTTAAAACTTT+TGG	0.211935	7.2:+22562071	None:intergenic
AAGCTTCTGCTTAATTTCAT+AGG	0.257059	7.2:+22562542	None:intergenic
AAGGATATGGAATGCAATGA+GGG	0.568516	7.2:-22561491	MS.gene41693:CDS
AAGTAAATTTGATAGGGAAA+AGG	0.463934	7.2:-22561218	MS.gene41693:CDS
ACCAGAAGTGTAACAAGAGA+AGG	0.510352	7.2:-22561175	MS.gene41693:CDS
ACCGACAAAGCGCAGAAAGA+AGG	0.537058	7.2:+22562157	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTATATCACAGTGATTGA+CGG	+	chr7.2:22561223-22561242	None:intergenic	30.0%
AAGCTTCTGCTTAATTTCAT+AGG	+	chr7.2:22561484-22561503	None:intergenic	30.0%
ACTGAAAAACTAAATTTCGG+TGG	+	chr7.2:22561300-22561319	None:intergenic	30.0%
AGAAATGAGAAGAGGAAAAA+CGG	-	chr7.2:22561704-22561723	MS.gene41693:CDS	30.0%
AGCTTCTGCTTAATTTCATA+GGG	+	chr7.2:22561483-22561502	None:intergenic	30.0%
CATTCAATGATATCTGTTCT+TGG	-	chr7.2:22561642-22561661	MS.gene41693:CDS	30.0%
CTTCCTTGACTCTTAATATT+CGG	+	chr7.2:22562400-22562419	None:intergenic	30.0%
GGAAGATAACAATATTACTC+CGG	-	chr7.2:22562244-22562263	MS.gene41693:CDS	30.0%
TATATAGAGATGCAAGAGAA+AGG	-	chr7.2:22562644-22562663	MS.gene41693:CDS	30.0%
TATCTGTTCTTGGTAAAATG+AGG	-	chr7.2:22561652-22561671	MS.gene41693:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	22561150	22562895	22561150	ID=MS.gene41693
chr7.2	mRNA	22561150	22562895	22561150	ID=MS.gene41693.t1;Parent=MS.gene41693
chr7.2	exon	22561150	22562895	22561150	ID=MS.gene41693.t1.exon1;Parent=MS.gene41693.t1
chr7.2	CDS	22561150	22562895	22561150	ID=cds.MS.gene41693.t1;Parent=MS.gene41693.t1

Gene Sequence

>MS.gene41693

ATGATCAGAATCAGATCTAACCTATCTGTTCTTTCTATTGCTCTAGTACGCATAAGGCAAAACTCATTCACCGTCAATCACTGTGATATAGTTCACAAGCCTCTTATAAATGCTTTTAATTCTTCAAATTATTACACTTTTTTCGCTCCACCGAAATTTAGTTTTTCAGTTAGGTTCTTTTCTGCTGAATCCTCAAGTGACGATGACGATAATGAAGACGACGGTGATGATGATCATGATAAGAATAGTAGTCAGTTACATTTAAGGGATGATGGTTTTGTCGAAGATGTTAAGACTATTTTGGATATAATTCACAAACCGGGTTCTGGACCCTATGAAATTAAGCAGAAGCTTGAGGATTGCAATGTTAAAGCATCATCGGAGTTGGTTGTGGAGGTTCTTTCGAGGGTTCGCAATGATTGGGAAGCAGCTTTTACTTTTTTCTTGTGGGCTGGAAAGCAACCGGGGTATGATCATTCTGTTCGTGAATATCATTCAATGATATCTGTTCTTGGTAAAATGAGGAGATTTGATACTGCTTGGGCATTAGTTGAAGAAATGAGAAGAGGAAAAACGGGTGAATCTATTGTTACGCCACAAACTCTTTTGATTATGATAAGGAAATATTGTGCTGTTCATGATGTTGGTAGGGCTATAAACACTTTCTATGCTTTTAAACGGTTTAATTTTCAAGTTGGATTGTATGAGTTTCAAGGCCTTCTTTCTGCGCTTTGTCGGTACAAGAATGTGCAGGATGCTGAGCACTTATTGTTCTGCAACAAAAATGTTTTCCCACTTGACACCAAAAGTTTTAACATTATTCTTAATGGATGGTGCAATTTGATTGTTAGTGCTCGCAATGCAGAGAGGATTTGGGAGGAGATGAGTAAGAGACGAATCCAACATGATGTTGTCTCGTATGCAAGTATAATATCTTGTTATTCAAAGTCTTCTAAACTTTATAGGGTGCTCCAGCTGTTTGAACAAATGAAGAAAAGGAATATCACTCCTGATAGGAAGGTTTATAACGCAGTCATTTTTTCTCTTGCGAAGAATAGGATGGTGAAAGAAGCTGTAAATCTTATTAGAACAATGGAAGATAACAATATTACTCCGGATGCTATTACTTACAACTCTCTGATCAAACCTCTCTGCAAATCCCGCAAAATTGATGAAGCAAAAGAAATTTTCAATGAGATGTTGAAGCGAGGCATATCCCCATCTATTCGGACTTTTCATGCTTTCTTCCGAATATTAAGAGTCAAGGAAGAAGTATTTGAGCTTTTGGACAAAATGAAAGAGCAAGGGTGCAACCCAACTATTGAGACTTATATAATGTTGATAAGAAAGTTTTGCCGGTGGCGCCAACTTGATGAAGTCAAAAGGATATGGAATGCAATGAGGGAAGATGGAATCAGCCATGATCGTAGCTCGTATATTGTACTGATTCATGGTCTGTTTCTGAATTGTAAGGTGGAGGAAGCATACAAATATTATATAGAGATGCAAGAGAAAGGTTTTCTCCCTGAACCAAAGACAGAAAATATGCTTCAGACATGGCTTTCTGGGAGACAAGTAACAGACAGCCAGGTAACAGATCTAGAACACAAACAATTGGAACATGGTGGTGTTAAAAAGAATGTCAAACCTATACAAAGTAAATTTGATAGGGAAAAGGATTTTCTTCGTGAACCTGAGACCAGAAGTGTAACAAGAGAAGGGGGCTTTTCTTTCTGGGAGAAGTAA

Protein sequence

>MS.gene41693.t1

MIRIRSNLSVLSIALVRIRQNSFTVNHCDIVHKPLINAFNSSNYYTFFAPPKFSFSVRFFSAESSSDDDDNEDDGDDDHDKNSSQLHLRDDGFVEDVKTILDIIHKPGSGPYEIKQKLEDCNVKASSELVVEVLSRVRNDWEAAFTFFLWAGKQPGYDHSVREYHSMISVLGKMRRFDTAWALVEEMRRGKTGESIVTPQTLLIMIRKYCAVHDVGRAINTFYAFKRFNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLDTKSFNIILNGWCNLIVSARNAERIWEEMSKRRIQHDVVSYASIISCYSKSSKLYRVLQLFEQMKKRNITPDRKVYNAVIFSLAKNRMVKEAVNLIRTMEDNNITPDAITYNSLIKPLCKSRKIDEAKEIFNEMLKRGISPSIRTFHAFFRILRVKEEVFELLDKMKEQGCNPTIETYIMLIRKFCRWRQLDEVKRIWNAMREDGISHDRSSYIVLIHGLFLNCKVEEAYKYYIEMQEKGFLPEPKTENMLQTWLSGRQVTDSQVTDLEHKQLEHGGVKKNVKPIQSKFDREKDFLREPETRSVTREGGFSFWEK