Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50037.t1 | XP_024632599.1 | 99.6 | 283 | 1 | 0 | 1 | 283 | 1 | 283 | 2.00E-119 | 438.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50037.t1 | Q9C717 | 44.7 | 291 | 143 | 6 | 1 | 282 | 1 | 282 | 1.0e-39 | 165.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50037.t1 | G7ZWG9 | 99.6 | 283 | 1 | 0 | 1 | 283 | 1 | 283 | 1.5e-119 | 438.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene50037 | 0.828516 | 8.61E-55 | -1.69E-46 |
| MS.gene049283 | MS.gene50037 | 0.831883 | 1.30E-55 | -1.69E-46 |
| MS.gene049368 | MS.gene50037 | 0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene50037 | 0.822305 | 2.54E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene50037 | 0.800042 | 1.73E-48 | -1.69E-46 |
| MS.gene050359 | MS.gene50037 | 0.809974 | 1.45E-50 | -1.69E-46 |
| MS.gene050414 | MS.gene50037 | 0.804131 | 2.50E-49 | -1.69E-46 |
| MS.gene050551 | MS.gene50037 | 0.826875 | 2.13E-54 | -1.69E-46 |
| MS.gene050571 | MS.gene50037 | 0.824983 | 6.00E-54 | -1.69E-46 |
| MS.gene050646 | MS.gene50037 | 0.840695 | 7.45E-58 | -1.69E-46 |
| MS.gene050654 | MS.gene50037 | 0.839176 | 1.85E-57 | -1.69E-46 |
| MS.gene050689 | MS.gene50037 | 0.815949 | 7.11E-52 | -1.69E-46 |
| MS.gene050945 | MS.gene50037 | 0.807138 | 5.85E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene50037 | 0.818186 | 2.24E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene50037 | 0.850262 | 1.90E-60 | -1.69E-46 |
| MS.gene051381 | MS.gene50037 | 0.819262 | 1.27E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene50037 | 0.834452 | 2.97E-56 | -1.69E-46 |
| MS.gene051975 | MS.gene50037 | 0.834556 | 2.80E-56 | -1.69E-46 |
| MS.gene052242 | MS.gene50037 | -0.801476 | 8.85E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene50037 | 0.854888 | 9.12E-62 | -1.69E-46 |
| MS.gene052463 | MS.gene50037 | 0.832329 | 1.01E-55 | -1.69E-46 |
| MS.gene052514 | MS.gene50037 | 0.800496 | 1.40E-48 | -1.69E-46 |
| MS.gene052516 | MS.gene50037 | 0.81056 | 1.08E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene50037 | 0.813156 | 2.95E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene50037 | 0.858777 | 6.53E-63 | -1.69E-46 |
| MS.gene052775 | MS.gene50037 | 0.823699 | 1.20E-53 | -1.69E-46 |
| MS.gene052776 | MS.gene50037 | 0.844035 | 9.70E-59 | -1.69E-46 |
| MS.gene053058 | MS.gene50037 | 0.837289 | 5.68E-57 | -1.69E-46 |
| MS.gene053079 | MS.gene50037 | 0.839069 | 1.98E-57 | -1.69E-46 |
| MS.gene053143 | MS.gene50037 | 0.839881 | 1.21E-57 | -1.69E-46 |
| MS.gene053620 | MS.gene50037 | 0.818617 | 1.79E-52 | -1.69E-46 |
| MS.gene054178 | MS.gene50037 | 0.804046 | 2.61E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene50037 | 0.808551 | 2.93E-50 | -1.69E-46 |
| MS.gene054824 | MS.gene50037 | 0.802593 | 5.21E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene50037 | 0.82443 | 8.10E-54 | -1.69E-46 |
| MS.gene054893 | MS.gene50037 | 0.827718 | 1.34E-54 | -1.69E-46 |
| MS.gene055313 | MS.gene50037 | 0.80804 | 3.76E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene50037 | 0.869394 | 3.20E-66 | -1.69E-46 |
| MS.gene055864 | MS.gene50037 | 0.828658 | 7.95E-55 | -1.69E-46 |
| MS.gene056045 | MS.gene50037 | 0.817738 | 2.82E-52 | -1.69E-46 |
| MS.gene056097 | MS.gene50037 | 0.823098 | 1.66E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene50037 | 0.800143 | 1.65E-48 | -1.69E-46 |
| MS.gene056181 | MS.gene50037 | 0.843841 | 1.09E-58 | -1.69E-46 |
| MS.gene056308 | MS.gene50037 | 0.825192 | 5.36E-54 | -1.69E-46 |
| MS.gene056390 | MS.gene50037 | 0.807542 | 4.80E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene50037 | 0.837749 | 4.33E-57 | -1.69E-46 |
| MS.gene056509 | MS.gene50037 | 0.825058 | 5.77E-54 | -1.69E-46 |
| MS.gene056519 | MS.gene50037 | 0.811511 | 6.75E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene50037 | 0.845208 | 4.69E-59 | -1.69E-46 |
| MS.gene056776 | MS.gene50037 | 0.801098 | 1.06E-48 | -1.69E-46 |
| MS.gene056787 | MS.gene50037 | 0.834572 | 2.77E-56 | -1.69E-46 |
| MS.gene056831 | MS.gene50037 | 0.806505 | 7.96E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene50037 | 0.822725 | 2.03E-53 | -1.69E-46 |
| MS.gene056973 | MS.gene50037 | 0.817345 | 3.46E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene50037 | 0.807231 | 5.59E-50 | -1.69E-46 |
| MS.gene057034 | MS.gene50037 | 0.931954 | 1.76E-94 | -1.69E-46 |
| MS.gene057102 | MS.gene50037 | 0.818467 | 1.93E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene50037 | 0.814895 | 1.22E-51 | -1.69E-46 |
| MS.gene058126 | MS.gene50037 | 0.802973 | 4.35E-49 | -1.69E-46 |
| MS.gene058289 | MS.gene50037 | 0.818109 | 2.33E-52 | -1.69E-46 |
| MS.gene059007 | MS.gene50037 | 0.842297 | 2.82E-58 | -1.69E-46 |
| MS.gene059146 | MS.gene50037 | 0.813974 | 1.95E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene50037 | 0.816659 | 4.94E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene50037 | -0.802634 | 5.11E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene50037 | 0.86672 | 2.32E-65 | -1.69E-46 |
| MS.gene060777 | MS.gene50037 | 0.800614 | 1.33E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene50037 | 0.813483 | 2.50E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene50037 | 0.839358 | 1.66E-57 | -1.69E-46 |
| MS.gene060935 | MS.gene50037 | 0.8049 | 1.73E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene50037 | 0.816449 | 5.50E-52 | -1.69E-46 |
| MS.gene061006 | MS.gene50037 | 0.835248 | 1.87E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene50037 | 0.826401 | 2.77E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50037.t1 | MTR_2g100240 | 99.647 | 283 | 1 | 0 | 1 | 283 | 1 | 283 | 0.0 | 575 |
| MS.gene50037.t1 | MTR_2g060900 | 36.842 | 285 | 138 | 5 | 13 | 255 | 1 | 285 | 9.91e-49 | 164 |
| MS.gene50037.t1 | MTR_7g019180 | 36.859 | 312 | 162 | 9 | 1 | 281 | 1 | 308 | 5.28e-47 | 162 |
| MS.gene50037.t1 | MTR_4g129730 | 35.065 | 231 | 149 | 1 | 32 | 262 | 1 | 230 | 1.47e-40 | 142 |
| MS.gene50037.t1 | MTR_4g129730 | 35.931 | 231 | 136 | 3 | 32 | 262 | 1 | 219 | 4.28e-40 | 140 |
| MS.gene50037.t1 | MTR_5g072760 | 31.224 | 237 | 152 | 5 | 44 | 270 | 37 | 272 | 2.53e-35 | 128 |
| MS.gene50037.t1 | MTR_5g072760 | 31.364 | 220 | 142 | 4 | 44 | 255 | 37 | 255 | 1.75e-33 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50037.t1 | AT1G55170 | 51.049 | 286 | 132 | 4 | 1 | 282 | 1 | 282 | 1.71e-86 | 260 |
| MS.gene50037.t1 | AT3G14750 | 38.696 | 230 | 131 | 3 | 37 | 257 | 63 | 291 | 1.68e-46 | 159 |
| MS.gene50037.t1 | AT1G67170 | 38.647 | 207 | 127 | 0 | 33 | 239 | 47 | 253 | 5.50e-42 | 148 |
| MS.gene50037.t1 | AT1G67170 | 38.647 | 207 | 127 | 0 | 33 | 239 | 47 | 253 | 5.50e-42 | 148 |
| MS.gene50037.t1 | AT2G30120 | 26.957 | 230 | 154 | 1 | 42 | 257 | 37 | 266 | 2.54e-21 | 91.7 |
| MS.gene50037.t1 | AT2G30120 | 26.754 | 228 | 153 | 1 | 42 | 255 | 37 | 264 | 5.92e-21 | 90.1 |
| MS.gene50037.t1 | AT2G30120 | 26.638 | 229 | 154 | 1 | 41 | 255 | 36 | 264 | 6.57e-21 | 90.5 |
| MS.gene50037.t1 | AT5G61920 | 28.351 | 194 | 139 | 0 | 28 | 221 | 37 | 230 | 1.53e-18 | 82.8 |
| MS.gene50037.t1 | AT5G61920 | 28.351 | 194 | 139 | 0 | 28 | 221 | 37 | 230 | 1.53e-18 | 82.8 |
| MS.gene50037.t1 | AT5G61920 | 28.351 | 194 | 139 | 0 | 28 | 221 | 37 | 230 | 1.53e-18 | 82.8 |
| MS.gene50037.t1 | AT5G61920 | 28.351 | 194 | 139 | 0 | 28 | 221 | 37 | 230 | 1.53e-18 | 82.8 |
| MS.gene50037.t1 | AT5G61920 | 28.351 | 194 | 139 | 0 | 28 | 221 | 37 | 230 | 1.53e-18 | 82.8 |
| MS.gene50037.t1 | AT5G61920 | 28.902 | 173 | 123 | 0 | 49 | 221 | 17 | 189 | 1.53e-16 | 76.6 |
| MS.gene50037.t1 | AT2G30120 | 27.972 | 143 | 103 | 0 | 39 | 181 | 34 | 176 | 1.12e-11 | 62.8 |
| MS.gene50037.t1 | AT2G30120 | 27.972 | 143 | 103 | 0 | 39 | 181 | 34 | 176 | 1.62e-11 | 62.0 |
| MS.gene50037.t1 | AT2G30120 | 27.972 | 143 | 103 | 0 | 39 | 181 | 34 | 176 | 1.62e-11 | 62.0 |
Find 80 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAGAAAGGTCCTCTTTA+TGG | 0.176094 | 2.3:-3511173 | MS.gene50037:CDS |
| TTGCCTTATGGAACAAATTT+TGG | 0.192469 | 2.3:-3511342 | MS.gene50037:CDS |
| ATTCATGCAGGTTTGCCTTA+TGG | 0.235597 | 2.3:-3511354 | MS.gene50037:intron |
| ATGGGGTGGGTACTGCTTCT+AGG | 0.246552 | 2.3:-3511154 | MS.gene50037:CDS |
| CACTTACGAAAGATGTTTCT+AGG | 0.253529 | 2.3:-3512416 | MS.gene50037:CDS |
| AGTATCAAACAAGAACTTTC+TGG | 0.261139 | 2.3:-3512450 | MS.gene50037:CDS |
| CACGAAGTTTCTCAACTTCT+CGG | 0.317894 | 2.3:+3512119 | None:intergenic |
| ACCTAGCACGCATCAGTTCT+TGG | 0.336174 | 2.3:+3512337 | None:intergenic |
| ACCTCATCCAGCATTGTTAG+AGG | 0.338446 | 2.3:-3512745 | MS.gene50037:CDS |
| CCTCCATATGCAGATGGATA+TGG | 0.340583 | 2.3:-3511297 | MS.gene50037:CDS |
| CAGAGAAAGGTCCTCTTTAT+GGG | 0.349670 | 2.3:-3511172 | MS.gene50037:CDS |
| TCAATGAGATCTGAGATTGA+TGG | 0.370744 | 2.3:-3512366 | MS.gene50037:CDS |
| GGAGGCTGGTGGCGGATAAC+AGG | 0.382841 | 2.3:-3512692 | MS.gene50037:CDS |
| CTTCCGATGGATACCCTCTT+CGG | 0.387777 | 2.3:+3512814 | None:intergenic |
| GAAGGCAAACATGGAGTTCA+TGG | 0.395776 | 2.3:-3512182 | MS.gene50037:CDS |
| CTACCAAAATTTGTTCCATA+AGG | 0.410355 | 2.3:+3511339 | None:intergenic |
| TGAAGTTGGAGTCTGATCTT+AGG | 0.426762 | 2.3:-3512533 | MS.gene50037:CDS |
| GGTGGTGGCCCGCGAGCATA+AGG | 0.435456 | 2.3:+3512789 | None:intergenic |
| TAGCATGGATGGAAGACATT+GGG | 0.438242 | 2.3:-3512086 | MS.gene50037:CDS |
| TTTCTCAACTTCTCGGGCCA+TGG | 0.443621 | 2.3:+3512126 | None:intergenic |
| TTCCGATGGATACCCTCTTC+GGG | 0.447941 | 2.3:+3512815 | None:intergenic |
| AAACATCTTTCGTAAGTGTC+TGG | 0.450505 | 2.3:+3512421 | None:intergenic |
| GTTTAGGCTGCTGCAGAGAA+AGG | 0.464656 | 2.3:-3511185 | MS.gene50037:intron |
| GATGGAAGACATTGGGGAGC+TGG | 0.465511 | 2.3:-3512079 | MS.gene50037:intron |
| GTATCAAACAAGAACTTTCT+GGG | 0.473347 | 2.3:-3512449 | MS.gene50037:CDS |
| TCAATCTCAGATCTCATTGA+AGG | 0.475047 | 2.3:+3512369 | None:intergenic |
| ACGAAGTTTCTCAACTTCTC+GGG | 0.483936 | 2.3:+3512120 | None:intergenic |
| AGCTCTTCCTCTAACAATGC+TGG | 0.487736 | 2.3:+3512738 | None:intergenic |
| ACACCATATCCATCTGCATA+TGG | 0.495250 | 2.3:+3511294 | None:intergenic |
| GCGAGACCTTGCAGCTGCGA+AGG | 0.508426 | 2.3:-3512640 | MS.gene50037:CDS |
| TATGGTGGATTATGAAAAGA+AGG | 0.509898 | 2.3:-3512200 | MS.gene50037:CDS |
| TACCCTCTTCGGGAACTCAT+TGG | 0.513298 | 2.3:+3512825 | None:intergenic |
| TCCTCTAACAATGCTGGATG+AGG | 0.514770 | 2.3:+3512744 | None:intergenic |
| TGCTGTCGTGGCATTGGTGG+TGG | 0.516987 | 2.3:+3512774 | None:intergenic |
| TATCCATCTGCATATGGAGG+TGG | 0.517988 | 2.3:+3511300 | None:intergenic |
| GCTGAGCTTGCTAGCATGGA+TGG | 0.521001 | 2.3:-3512097 | MS.gene50037:CDS |
| TCGTGCTGAGCTTGCTAGCA+TGG | 0.521988 | 2.3:-3512101 | MS.gene50037:CDS |
| CTGAACATGAGATGCATTCG+AGG | 0.524074 | 2.3:-3512575 | MS.gene50037:CDS |
| CATCGTATGAATTTAGCGAT+TGG | 0.524610 | 2.3:-3512609 | MS.gene50037:CDS |
| GCAGTACCCACCCCATAAAG+AGG | 0.528840 | 2.3:+3511161 | None:intergenic |
| AGACCTTGCAGCTGCGAAGG+AGG | 0.529458 | 2.3:-3512637 | MS.gene50037:CDS |
| CATGGAACAGAGGCAGTCAA+TGG | 0.533149 | 2.3:-3512164 | MS.gene50037:CDS |
| TGTATAACTTCATTCTTCAA+CGG | 0.535567 | 2.3:+3512501 | None:intergenic |
| GGAATATGCTGTCGTGGCAT+TGG | 0.548596 | 2.3:+3512768 | None:intergenic |
| TCTAACAATGCTGGATGAGG+TGG | 0.550555 | 2.3:+3512747 | None:intergenic |
| CCTCTTCGGGAACTCATTGG+TGG | 0.551456 | 2.3:+3512828 | None:intergenic |
| CTAGCATGGATGGAAGACAT+TGG | 0.560779 | 2.3:-3512087 | MS.gene50037:CDS |
| TCGGAAGGTCCTTATGCTCG+CGG | 0.566608 | 2.3:-3512798 | MS.gene50037:CDS |
| ACCAAGAACTGATGCGTGCT+AGG | 0.567292 | 2.3:-3512338 | MS.gene50037:intron |
| TTATGAAAAGAAGGCAAACA+TGG | 0.573229 | 2.3:-3512191 | MS.gene50037:CDS |
| GCTCCTCCTTCGCAGCTGCA+AGG | 0.574836 | 2.3:+3512634 | None:intergenic |
| ATTCAACGACGGTTTGAGCG+AGG | 0.579107 | 2.3:+3511116 | None:intergenic |
| AAAGGTCCTCTTTATGGGGT+GGG | 0.581180 | 2.3:-3511167 | MS.gene50037:CDS |
| GAAAGGTCCTCTTTATGGGG+TGG | 0.586390 | 2.3:-3511168 | MS.gene50037:CDS |
| ATATGCTGTCGTGGCATTGG+TGG | 0.591214 | 2.3:+3512771 | None:intergenic |
| ACAGGAGGTTGATTGATGAT+CGG | 0.594043 | 2.3:-3512674 | MS.gene50037:CDS |
| TTCCCACCTCCATATGCAGA+TGG | 0.594536 | 2.3:-3511303 | MS.gene50037:CDS |
| ATCCATCTGCATATGGAGGT+GGG | 0.596363 | 2.3:+3511301 | None:intergenic |
| CGGAAGGTCCTTATGCTCGC+GGG | 0.597736 | 2.3:-3512797 | MS.gene50037:CDS |
| CAAACAAGAACTTTCTGGGA+AGG | 0.599275 | 2.3:-3512445 | MS.gene50037:CDS |
| TGAAATGAGGAGGCTGGTGG+CGG | 0.604523 | 2.3:-3512700 | MS.gene50037:CDS |
| GCATGCTGAAATGAGGAGGC+TGG | 0.605896 | 2.3:-3512706 | MS.gene50037:CDS |
| GGCTGGTGGCGGATAACAGG+AGG | 0.608308 | 2.3:-3512689 | MS.gene50037:CDS |
| CACCAATGAGTTCCCGAAGA+GGG | 0.614590 | 2.3:-3512827 | MS.gene50037:CDS |
| CGAGCATAAGGACCTTCCGA+TGG | 0.617038 | 2.3:+3512801 | None:intergenic |
| CGAAGAGGGTATCCATCGGA+AGG | 0.623087 | 2.3:-3512813 | MS.gene50037:CDS |
| AAGTGCAGCATGCTGAAATG+AGG | 0.630681 | 2.3:-3512713 | MS.gene50037:CDS |
| TTCCCGAAGAGGGTATCCAT+CGG | 0.640372 | 2.3:-3512817 | MS.gene50037:CDS |
| AGCATGGATGGAAGACATTG+GGG | 0.653311 | 2.3:-3512085 | MS.gene50037:CDS |
| TGAGGTGGAATATGCTGTCG+TGG | 0.657020 | 2.3:+3512762 | None:intergenic |
| CCATATCCATCTGCATATGG+AGG | 0.657742 | 2.3:+3511297 | None:intergenic |
| TGCTGAAATGAGGAGGCTGG+TGG | 0.673111 | 2.3:-3512703 | MS.gene50037:CDS |
| TGAACATGAGATGCATTCGA+GGG | 0.676175 | 2.3:-3512574 | MS.gene50037:CDS |
| AGAGAAAGGTCCTCTTTATG+GGG | 0.677550 | 2.3:-3511171 | MS.gene50037:CDS |
| TGCAGCATGCTGAAATGAGG+AGG | 0.680683 | 2.3:-3512710 | MS.gene50037:CDS |
| CAATCACTTAGATTCAACGA+CGG | 0.682596 | 2.3:+3511105 | None:intergenic |
| TTGGTGGCTCTCTATGAACA+CGG | 0.684269 | 2.3:+3512844 | None:intergenic |
| ACATGGAGTTCATGGAACAG+AGG | 0.685058 | 2.3:-3512174 | MS.gene50037:CDS |
| CCACCAATGAGTTCCCGAAG+AGG | 0.693852 | 2.3:-3512828 | MS.gene50037:CDS |
| AGATGGATATGGTGTTCACA+TGG | 0.705947 | 2.3:-3511286 | MS.gene50037:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAAAAGACATGAAAAA+CGG | - | chr2.3:3512075-3512094 | MS.gene50037:intron | 15.0% |
| !!! | ATTTTTGTTTTATAGAACTA+TGG | - | chr2.3:3511758-3511777 | MS.gene50037:intron | 15.0% |
| !! | AATGAAATGACATGAATAAT+AGG | - | chr2.3:3512044-3512063 | MS.gene50037:intron | 20.0% |
| !! | ATCCAATTAACACAAATAAT+AGG | + | chr2.3:3512472-3512491 | None:intergenic | 20.0% |
| !! | ATCCTATTATTTGTGTTAAT+TGG | - | chr2.3:3512467-3512486 | MS.gene50037:CDS | 20.0% |
| !!! | TGTTGATAAAAATATGAAGT+TGG | - | chr2.3:3511429-3511448 | MS.gene50037:intron | 20.0% |
| !!! | TTTTGTGTATTATGTGATTA+CGG | + | chr2.3:3512174-3512193 | None:intergenic | 20.0% |
| !!! | TTTTTAGAATTTAAGGCAAT+TGG | - | chr2.3:3512202-3512221 | MS.gene50037:CDS | 20.0% |
| ! | AATCACATAATACACAAAAG+TGG | - | chr2.3:3512175-3512194 | MS.gene50037:CDS | 25.0% |
| ! | AATGAAGCAAACGTTAAAAA+AGG | + | chr2.3:3512605-3512624 | None:intergenic | 25.0% |
| ! | ATCTTTCAGACAATTATGAA+GGG | + | chr2.3:3512133-3512152 | None:intergenic | 25.0% |
| ! | ATGAAGCAAACGTTAAAAAA+GGG | + | chr2.3:3512604-3512623 | None:intergenic | 25.0% |
| ! | TGTATAACTTCATTCTTCAA+CGG | + | chr2.3:3511478-3511497 | None:intergenic | 25.0% |
| !! | GGTCTAAAATTATTGTGTTA+AGG | + | chr2.3:3512726-3512745 | None:intergenic | 25.0% |
| !!! | AGAATTTTAGTATTCATCGA+GGG | - | chr2.3:3512321-3512340 | MS.gene50037:intron | 25.0% |
| !!! | TGGCAGTTTTTTAGAATTTA+AGG | - | chr2.3:3512195-3512214 | MS.gene50037:CDS | 25.0% |
| !!! | TTTGTTTTATAGAACTATGG+TGG | - | chr2.3:3511761-3511780 | MS.gene50037:intron | 25.0% |
| AAGCAAAGTAAATGAAACCT+TGG | + | chr2.3:3512763-3512782 | None:intergenic | 30.0% | |
| AAGGATGATAAATTCTGCAA+AGG | + | chr2.3:3511945-3511964 | None:intergenic | 30.0% | |
| AGTATCAAACAAGAACTTTC+TGG | - | chr2.3:3511526-3511545 | MS.gene50037:intron | 30.0% | |
| ATAATTGTCTGAAAGATGGT+TGG | - | chr2.3:3512136-3512155 | MS.gene50037:CDS | 30.0% | |
| CATCTTTCAGACAATTATGA+AGG | + | chr2.3:3512134-3512153 | None:intergenic | 30.0% | |
| CTTCATAATTGTCTGAAAGA+TGG | - | chr2.3:3512132-3512151 | MS.gene50037:CDS | 30.0% | |
| GAGTTAAGGTGATTAAGAAT+AGG | + | chr2.3:3512257-3512276 | None:intergenic | 30.0% | |
| GCTATGCTAGTAAATACATA+TGG | + | chr2.3:3511980-3511999 | None:intergenic | 30.0% | |
| GTATCAAACAAGAACTTTCT+GGG | - | chr2.3:3511527-3511546 | MS.gene50037:intron | 30.0% | |
| TAATTGTCTGAAAGATGGTT+GGG | - | chr2.3:3512137-3512156 | MS.gene50037:CDS | 30.0% | |
| TATAGACACATCATGATGTT+TGG | - | chr2.3:3512502-3512521 | MS.gene50037:CDS | 30.0% | |
| TGAAGCAAACGTTAAAAAAG+GGG | + | chr2.3:3512603-3512622 | None:intergenic | 30.0% | |
| TTATGAAAAGAAGGCAAACA+TGG | - | chr2.3:3511785-3511804 | MS.gene50037:intron | 30.0% | |
| ! | ATATCTTTCGATCTTTTGAC+TGG | - | chr2.3:3512374-3512393 | MS.gene50037:CDS | 30.0% |
| ! | CTACCAAAATTTGTTCCATA+AGG | + | chr2.3:3512640-3512659 | None:intergenic | 30.0% |
| ! | TCTATCTTTAAGCATCCTTT+TGG | - | chr2.3:3511694-3511713 | MS.gene50037:intron | 30.0% |
| ! | TTGCCTTATGGAACAAATTT+TGG | - | chr2.3:3512634-3512653 | MS.gene50037:CDS | 30.0% |
| !! | CAGAATTTTAGTATTCATCG+AGG | - | chr2.3:3512320-3512339 | MS.gene50037:intron | 30.0% |
| !! | CTATGTGATGATTTTGAGAA+CGG | - | chr2.3:3512297-3512316 | MS.gene50037:intron | 30.0% |
| !! | TATGGTGGATTATGAAAAGA+AGG | - | chr2.3:3511776-3511795 | MS.gene50037:intron | 30.0% |
| AAACATCTTTCGTAAGTGTC+TGG | + | chr2.3:3511558-3511577 | None:intergenic | 35.0% | |
| AATTGTCTGAAAGATGGTTG+GGG | - | chr2.3:3512138-3512157 | MS.gene50037:CDS | 35.0% | |
| ACCTTGGAAAATTGAATACG+AGG | + | chr2.3:3512747-3512766 | None:intergenic | 35.0% | |
| CACTTACGAAAGATGTTTCT+AGG | - | chr2.3:3511560-3511579 | MS.gene50037:intron | 35.0% | |
| CATCGTATGAATTTAGCGAT+TGG | - | chr2.3:3511367-3511386 | MS.gene50037:intron | 35.0% | |
| GGAGTTCATTAGTGATAACA+GGG | - | chr2.3:3512342-3512361 | MS.gene50037:CDS | 35.0% | |
| TCAATCTCAGATCTCATTGA+AGG | + | chr2.3:3511610-3511629 | None:intergenic | 35.0% | |
| ! | ACCTCGTATTCAATTTTCCA+AGG | - | chr2.3:3512743-3512762 | MS.gene50037:CDS | 35.0% |
| ! | TCAATGAGATCTGAGATTGA+TGG | - | chr2.3:3511610-3511629 | MS.gene50037:intron | 35.0% |
| ! | TCTTTAAGCATCCTTTTGGT+TGG | - | chr2.3:3511698-3511717 | MS.gene50037:intron | 35.0% |
| ! | TGCTACAGTATCTGCATTTT+TGG | + | chr2.3:3512448-3512467 | None:intergenic | 35.0% |
| ! | TTGTGGATTGATTGCTAACA+CGG | - | chr2.3:3511662-3511681 | MS.gene50037:intron | 35.0% |
| !! | AACAAATTTTGGTAGTCCAG+AGG | - | chr2.3:3512645-3512664 | MS.gene50037:CDS | 35.0% |
| !! | ACAAATTTTGGTAGTCCAGA+GGG | - | chr2.3:3512646-3512665 | MS.gene50037:CDS | 35.0% |
| !! | CTTTAAGCATCCTTTTGGTT+GGG | - | chr2.3:3511699-3511718 | MS.gene50037:intron | 35.0% |
| AACGTTTGCTTCATTCATGC+AGG | - | chr2.3:3512610-3512629 | MS.gene50037:CDS | 40.0% | |
| ACACCATATCCATCTGCATA+TGG | + | chr2.3:3512685-3512704 | None:intergenic | 40.0% | |
| ACGAAGTTTCTCAACTTCTC+GGG | + | chr2.3:3511859-3511878 | None:intergenic | 40.0% | |
| AGAGAAAGGTCCTCTTTATG+GGG | - | chr2.3:3512805-3512824 | MS.gene50037:CDS | 40.0% | |
| AGATGGATATGGTGTTCACA+TGG | - | chr2.3:3512690-3512709 | MS.gene50037:CDS | 40.0% | |
| ATGCAGAAATCCCAACCAAA+AGG | + | chr2.3:3511712-3511731 | None:intergenic | 40.0% | |
| ATTCATGCAGGTTTGCCTTA+TGG | - | chr2.3:3512622-3512641 | MS.gene50037:CDS | 40.0% | |
| ATTGTCTGAAAGATGGTTGG+GGG | - | chr2.3:3512139-3512158 | MS.gene50037:CDS | 40.0% | |
| CACGAAGTTTCTCAACTTCT+CGG | + | chr2.3:3511860-3511879 | None:intergenic | 40.0% | |
| CAGAGAAAGGTCCTCTTTAT+GGG | - | chr2.3:3512804-3512823 | MS.gene50037:CDS | 40.0% | |
| CATATGGAGTTAACGACTGA+AGG | + | chr2.3:3511964-3511983 | None:intergenic | 40.0% | |
| CTTTGCTTGTGCTTCTGTTT+AGG | - | chr2.3:3512775-3512794 | MS.gene50037:CDS | 40.0% | |
| GCAGTCAATGGAGAAAAACA+TGG | - | chr2.3:3511824-3511843 | MS.gene50037:intron | 40.0% | |
| GGAGAAAAACATGGTTTCCA+TGG | - | chr2.3:3511833-3511852 | MS.gene50037:intron | 40.0% | |
| GGGAGTTCATTAGTGATAAC+AGG | - | chr2.3:3512341-3512360 | MS.gene50037:CDS | 40.0% | |
| TAGACAAGTTAGAGAAAGCG+TGG | + | chr2.3:3512280-3512299 | None:intergenic | 40.0% | |
| TAGCATGGATGGAAGACATT+GGG | - | chr2.3:3511890-3511909 | MS.gene50037:intron | 40.0% | |
| TGAACATGAGATGCATTCGA+GGG | - | chr2.3:3511402-3511421 | MS.gene50037:intron | 40.0% | |
| TGAAGTTGGAGTCTGATCTT+AGG | - | chr2.3:3511443-3511462 | MS.gene50037:intron | 40.0% | |
| ! | ACAGGAGGTTGATTGATGAT+CGG | - | chr2.3:3511302-3511321 | MS.gene50037:CDS | 40.0% |
| ! | AGACAAGTTAGAGAAAGCGT+GGG | + | chr2.3:3512279-3512298 | None:intergenic | 40.0% |
| ! | CAAACAAGAACTTTCTGGGA+AGG | - | chr2.3:3511531-3511550 | MS.gene50037:intron | 40.0% |
| !! | AAATTTTGGTAGTCCAGAGG+GGG | - | chr2.3:3512648-3512667 | MS.gene50037:CDS | 40.0% |
| !! | CAAATTTTGGTAGTCCAGAG+GGG | - | chr2.3:3512647-3512666 | MS.gene50037:CDS | 40.0% |
| AAAGGTCCTCTTTATGGGGT+GGG | - | chr2.3:3512809-3512828 | MS.gene50037:CDS | 45.0% | |
| AAGTGCAGCATGCTGAAATG+AGG | - | chr2.3:3511263-3511282 | MS.gene50037:intron | 45.0% | |
| ACATGGAGTTCATGGAACAG+AGG | - | chr2.3:3511802-3511821 | MS.gene50037:intron | 45.0% | |
| ACCTCATCCAGCATTGTTAG+AGG | - | chr2.3:3511231-3511250 | MS.gene50037:intron | 45.0% | |
| AGCATGGATGGAAGACATTG+GGG | - | chr2.3:3511891-3511910 | MS.gene50037:intron | 45.0% | |
| AGCTCTTCCTCTAACAATGC+TGG | + | chr2.3:3511241-3511260 | None:intergenic | 45.0% | |
| ATCCATCTGCATATGGAGGT+GGG | + | chr2.3:3512678-3512697 | None:intergenic | 45.0% | |
| ATCCCACAAGGTGTATACGT+AGG | - | chr2.3:3512416-3512435 | MS.gene50037:CDS | 45.0% | |
| ATCCCTACGTATACACCTTG+TGG | + | chr2.3:3512422-3512441 | None:intergenic | 45.0% | |
| CCATATCCATCTGCATATGG+AGG | + | chr2.3:3512682-3512701 | None:intergenic | 45.0% | |
| CCTCCATATGCAGATGGATA+TGG | - | chr2.3:3512679-3512698 | MS.gene50037:CDS | 45.0% | |
| CTAGCATGGATGGAAGACAT+TGG | - | chr2.3:3511889-3511908 | MS.gene50037:intron | 45.0% | |
| CTGAACATGAGATGCATTCG+AGG | - | chr2.3:3511401-3511420 | MS.gene50037:intron | 45.0% | |
| GAAGGCAAACATGGAGTTCA+TGG | - | chr2.3:3511794-3511813 | MS.gene50037:intron | 45.0% | |
| GCAGAGAAAGGTCCTCTTTA+TGG | - | chr2.3:3512803-3512822 | MS.gene50037:CDS | 45.0% | |
| TATCCATCTGCATATGGAGG+TGG | + | chr2.3:3512679-3512698 | None:intergenic | 45.0% | |
| TCCCACAAGGTGTATACGTA+GGG | - | chr2.3:3512417-3512436 | MS.gene50037:CDS | 45.0% | |
| TCCCTACGTATACACCTTGT+GGG | + | chr2.3:3512421-3512440 | None:intergenic | 45.0% | |
| TCCTCTAACAATGCTGGATG+AGG | + | chr2.3:3511235-3511254 | None:intergenic | 45.0% | |
| TCTAACAATGCTGGATGAGG+TGG | + | chr2.3:3511232-3511251 | None:intergenic | 45.0% | |
| ! | TAGAGAAAGCGTGGGAGTTA+AGG | + | chr2.3:3512271-3512290 | None:intergenic | 45.0% |
| ! | TTGGTGGCTCTCTATGAACA+CGG | + | chr2.3:3511135-3511154 | None:intergenic | 45.0% |
| !! | AATTTTGGTAGTCCAGAGGG+GGG | - | chr2.3:3512649-3512668 | MS.gene50037:CDS | 45.0% |
| !! | CTTTTGACTGGCAGTGTTGA+GGG | - | chr2.3:3512386-3512405 | MS.gene50037:CDS | 45.0% |
| !! | TCTTTTGACTGGCAGTGTTG+AGG | - | chr2.3:3512385-3512404 | MS.gene50037:CDS | 45.0% |
| ACCAAGAACTGATGCGTGCT+AGG | - | chr2.3:3511638-3511657 | MS.gene50037:intron | 50.0% | |
| ACCTAGCACGCATCAGTTCT+TGG | + | chr2.3:3511642-3511661 | None:intergenic | 50.0% | |
| ACTGATGCGTGCTAGGTTTG+TGG | - | chr2.3:3511645-3511664 | MS.gene50037:intron | 50.0% | |
| CACCAATGAGTTCCCGAAGA+GGG | - | chr2.3:3511149-3511168 | MS.gene50037:CDS | 50.0% | |
| CATGGAACAGAGGCAGTCAA+TGG | - | chr2.3:3511812-3511831 | MS.gene50037:intron | 50.0% | |
| CTTCCGATGGATACCCTCTT+CGG | + | chr2.3:3511165-3511184 | None:intergenic | 50.0% | |
| GAAAGGTCCTCTTTATGGGG+TGG | - | chr2.3:3512808-3512827 | MS.gene50037:CDS | 50.0% | |
| GGAATATGCTGTCGTGGCAT+TGG | + | chr2.3:3511211-3511230 | None:intergenic | 50.0% | |
| GTTTAGGCTGCTGCAGAGAA+AGG | - | chr2.3:3512791-3512810 | MS.gene50037:CDS | 50.0% | |
| TACCCTCTTCGGGAACTCAT+TGG | + | chr2.3:3511154-3511173 | None:intergenic | 50.0% | |
| TGAGGTGGAATATGCTGTCG+TGG | + | chr2.3:3511217-3511236 | None:intergenic | 50.0% | |
| TGCAGCATGCTGAAATGAGG+AGG | - | chr2.3:3511266-3511285 | MS.gene50037:intron | 50.0% | |
| TTCCCACCTCCATATGCAGA+TGG | - | chr2.3:3512673-3512692 | MS.gene50037:CDS | 50.0% | |
| TTCCGATGGATACCCTCTTC+GGG | + | chr2.3:3511164-3511183 | None:intergenic | 50.0% | |
| TTTCTCAACTTCTCGGGCCA+TGG | + | chr2.3:3511853-3511872 | None:intergenic | 50.0% | |
| ! | ATATGCTGTCGTGGCATTGG+TGG | + | chr2.3:3511208-3511227 | None:intergenic | 50.0% |
| !! | TTCCCGAAGAGGGTATCCAT+CGG | - | chr2.3:3511159-3511178 | MS.gene50037:CDS | 50.0% |
| CCACCAATGAGTTCCCGAAG+AGG | - | chr2.3:3511148-3511167 | MS.gene50037:CDS | 55.0% | |
| CCTCTTCGGGAACTCATTGG+TGG | + | chr2.3:3511151-3511170 | None:intergenic | 55.0% | |
| CGAGCATAAGGACCTTCCGA+TGG | + | chr2.3:3511178-3511197 | None:intergenic | 55.0% | |
| GATGGAAGACATTGGGGAGC+TGG | - | chr2.3:3511897-3511916 | MS.gene50037:intron | 55.0% | |
| GCAGTACCCACCCCATAAAG+AGG | + | chr2.3:3512818-3512837 | None:intergenic | 55.0% | |
| GCATGCTGAAATGAGGAGGC+TGG | - | chr2.3:3511270-3511289 | MS.gene50037:intron | 55.0% | |
| TCGGAAGGTCCTTATGCTCG+CGG | - | chr2.3:3511178-3511197 | MS.gene50037:CDS | 55.0% | |
| TGAAATGAGGAGGCTGGTGG+CGG | - | chr2.3:3511276-3511295 | MS.gene50037:intron | 55.0% | |
| TGCTGAAATGAGGAGGCTGG+TGG | - | chr2.3:3511273-3511292 | MS.gene50037:intron | 55.0% | |
| ! | ATGGGGTGGGTACTGCTTCT+AGG | - | chr2.3:3512822-3512841 | MS.gene50037:CDS | 55.0% |
| ! | TTGACTGGCAGTGTTGAGGG+TGG | - | chr2.3:3512389-3512408 | MS.gene50037:CDS | 55.0% |
| !! | CGAAGAGGGTATCCATCGGA+AGG | - | chr2.3:3511163-3511182 | MS.gene50037:CDS | 55.0% |
| !! | GCTGAGCTTGCTAGCATGGA+TGG | - | chr2.3:3511879-3511898 | MS.gene50037:intron | 55.0% |
| !! | TCGTGCTGAGCTTGCTAGCA+TGG | - | chr2.3:3511875-3511894 | MS.gene50037:intron | 55.0% |
| AGACCTTGCAGCTGCGAAGG+AGG | - | chr2.3:3511339-3511358 | MS.gene50037:CDS | 60.0% | |
| CGGAAGGTCCTTATGCTCGC+GGG | - | chr2.3:3511179-3511198 | MS.gene50037:CDS | 60.0% | |
| ! | ACTGGCAGTGTTGAGGGTGG+TGG | - | chr2.3:3512392-3512411 | MS.gene50037:CDS | 60.0% |
| ! | GAGGGTGGTGGTATCCCACA+AGG | - | chr2.3:3512404-3512423 | MS.gene50037:CDS | 60.0% |
| !! | TGCTGTCGTGGCATTGGTGG+TGG | + | chr2.3:3511205-3511224 | None:intergenic | 60.0% |
| GCGAGACCTTGCAGCTGCGA+AGG | - | chr2.3:3511336-3511355 | MS.gene50037:CDS | 65.0% | |
| GCTCCTCCTTCGCAGCTGCA+AGG | + | chr2.3:3511345-3511364 | None:intergenic | 65.0% | |
| !! | GGAGGCTGGTGGCGGATAAC+AGG | - | chr2.3:3511284-3511303 | MS.gene50037:intron | 65.0% |
| !! | GGCTGGTGGCGGATAACAGG+AGG | - | chr2.3:3511287-3511306 | MS.gene50037:CDS | 65.0% |
| GGAGGTGGGAAACCCCCCTC+TGG | + | chr2.3:3512664-3512683 | None:intergenic | 70.0% | |
| ! | GGTGGTGGCCCGCGAGCATA+AGG | + | chr2.3:3511190-3511209 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 3511118 | 3512880 | 3511118 | ID=MS.gene50037 |
| chr2.3 | mRNA | 3511118 | 3512880 | 3511118 | ID=MS.gene50037.t1;Parent=MS.gene50037 |
| chr2.3 | exon | 3512339 | 3512880 | 3512339 | ID=MS.gene50037.t1.exon1;Parent=MS.gene50037.t1 |
| chr2.3 | CDS | 3512339 | 3512880 | 3512339 | ID=cds.MS.gene50037.t1;Parent=MS.gene50037.t1 |
| chr2.3 | exon | 3512080 | 3512225 | 3512080 | ID=MS.gene50037.t1.exon2;Parent=MS.gene50037.t1 |
| chr2.3 | CDS | 3512080 | 3512225 | 3512080 | ID=cds.MS.gene50037.t1;Parent=MS.gene50037.t1 |
| chr2.3 | exon | 3511287 | 3511366 | 3511287 | ID=MS.gene50037.t1.exon3;Parent=MS.gene50037.t1 |
| chr2.3 | CDS | 3511287 | 3511366 | 3511287 | ID=cds.MS.gene50037.t1;Parent=MS.gene50037.t1 |
| chr2.3 | exon | 3511118 | 3511201 | 3511118 | ID=MS.gene50037.t1.exon4;Parent=MS.gene50037.t1 |
| chr2.3 | CDS | 3511118 | 3511201 | 3511118 | ID=cds.MS.gene50037.t1;Parent=MS.gene50037.t1 |
| Gene Sequence |
| Protein sequence |
