Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52973.t1 | XP_003590834.1 | 98.5 | 202 | 3 | 0 | 1 | 202 | 1 | 202 | 1.90E-111 | 411.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52973.t1 | O22797 | 74.3 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 3.3e-88 | 325.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52973.t1 | B7FNC0 | 98.5 | 202 | 3 | 0 | 1 | 202 | 1 | 202 | 1.4e-111 | 411.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050114 | MS.gene52973 | 0.851592 | 8.03E-61 | -1.69E-46 |
| MS.gene050277 | MS.gene52973 | 0.834128 | 3.59E-56 | -1.69E-46 |
| MS.gene050288 | MS.gene52973 | 0.839403 | 1.62E-57 | -1.69E-46 |
| MS.gene050317 | MS.gene52973 | 0.815804 | 7.66E-52 | -1.69E-46 |
| MS.gene050320 | MS.gene52973 | 0.846234 | 2.47E-59 | -1.69E-46 |
| MS.gene050439 | MS.gene52973 | 0.803454 | 3.46E-49 | -1.69E-46 |
| MS.gene050752 | MS.gene52973 | 0.843565 | 1.30E-58 | -1.69E-46 |
| MS.gene050838 | MS.gene52973 | 0.861549 | 9.49E-64 | -1.69E-46 |
| MS.gene050955 | MS.gene52973 | 0.814671 | 1.37E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene52973 | 0.857766 | 1.31E-62 | -1.69E-46 |
| MS.gene051063 | MS.gene52973 | 0.836773 | 7.69E-57 | -1.69E-46 |
| MS.gene051233 | MS.gene52973 | 0.800764 | 1.24E-48 | -1.69E-46 |
| MS.gene051245 | MS.gene52973 | 0.809673 | 1.68E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene52973 | 0.818526 | 1.87E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene52973 | 0.822986 | 1.77E-53 | -1.69E-46 |
| MS.gene051748 | MS.gene52973 | 0.84026 | 9.68E-58 | -1.69E-46 |
| MS.gene051756 | MS.gene52973 | 0.87264 | 2.72E-67 | -1.69E-46 |
| MS.gene051757 | MS.gene52973 | 0.819362 | 1.21E-52 | -1.69E-46 |
| MS.gene051850 | MS.gene52973 | 0.807851 | 4.13E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene52973 | 0.854806 | 9.63E-62 | -1.69E-46 |
| MS.gene051975 | MS.gene52973 | 0.826014 | 3.42E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene52973 | 0.811115 | 8.23E-51 | -1.69E-46 |
| MS.gene053058 | MS.gene52973 | 0.818699 | 1.71E-52 | -1.69E-46 |
| MS.gene053109 | MS.gene52973 | 0.842689 | 2.22E-58 | -1.69E-46 |
| MS.gene053564 | MS.gene52973 | 0.817134 | 3.86E-52 | -1.69E-46 |
| MS.gene053786 | MS.gene52973 | 0.80555 | 1.26E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene52973 | 0.840822 | 6.90E-58 | -1.69E-46 |
| MS.gene054536 | MS.gene52973 | 0.806721 | 7.17E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene52973 | 0.818518 | 1.88E-52 | -1.69E-46 |
| MS.gene055424 | MS.gene52973 | 0.815594 | 8.53E-52 | -1.69E-46 |
| MS.gene055603 | MS.gene52973 | 0.828602 | 8.20E-55 | -1.69E-46 |
| MS.gene056181 | MS.gene52973 | 0.801237 | 9.90E-49 | -1.69E-46 |
| MS.gene056580 | MS.gene52973 | 0.801392 | 9.20E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene52973 | 0.822119 | 2.81E-53 | -1.69E-46 |
| MS.gene056638 | MS.gene52973 | 0.801351 | 9.38E-49 | -1.69E-46 |
| MS.gene056752 | MS.gene52973 | 0.802048 | 6.75E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene52973 | 0.855872 | 4.71E-62 | -1.69E-46 |
| MS.gene056830 | MS.gene52973 | -0.80352 | 3.35E-49 | -1.69E-46 |
| MS.gene056896 | MS.gene52973 | 0.821988 | 3.01E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene52973 | 0.839199 | 1.83E-57 | -1.69E-46 |
| MS.gene057094 | MS.gene52973 | 0.859797 | 3.22E-63 | -1.69E-46 |
| MS.gene057234 | MS.gene52973 | 0.844209 | 8.71E-59 | -1.69E-46 |
| MS.gene057451 | MS.gene52973 | -0.816862 | 4.44E-52 | -1.69E-46 |
| MS.gene057452 | MS.gene52973 | -0.836519 | 8.93E-57 | -1.69E-46 |
| MS.gene057890 | MS.gene52973 | -0.800318 | 1.52E-48 | -1.69E-46 |
| MS.gene057999 | MS.gene52973 | 0.837115 | 6.29E-57 | -1.69E-46 |
| MS.gene058054 | MS.gene52973 | 0.807195 | 5.69E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene52973 | 0.819444 | 1.16E-52 | -1.69E-46 |
| MS.gene058074 | MS.gene52973 | 0.801001 | 1.11E-48 | -1.69E-46 |
| MS.gene058238 | MS.gene52973 | 0.854246 | 1.40E-61 | -1.69E-46 |
| MS.gene058654 | MS.gene52973 | 0.811155 | 8.07E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene52973 | 0.813102 | 3.03E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene52973 | 0.806166 | 9.39E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene52973 | 0.832018 | 1.20E-55 | -1.69E-46 |
| MS.gene06001 | MS.gene52973 | 0.843632 | 1.24E-58 | -1.69E-46 |
| MS.gene06011 | MS.gene52973 | 0.847413 | 1.17E-59 | -1.69E-46 |
| MS.gene060297 | MS.gene52973 | 0.806613 | 7.56E-50 | -1.69E-46 |
| MS.gene060869 | MS.gene52973 | 0.806292 | 8.83E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52973.t1 | MTR_1g075710 | 98.515 | 202 | 3 | 0 | 1 | 202 | 1 | 202 | 2.76e-151 | 417 |
| MS.gene52973.t1 | MTR_1g041495 | 81.683 | 202 | 37 | 0 | 1 | 202 | 1 | 202 | 9.84e-126 | 353 |
| MS.gene52973.t1 | MTR_1g041495 | 78.199 | 211 | 37 | 1 | 1 | 202 | 1 | 211 | 1.09e-122 | 345 |
| MS.gene52973.t1 | MTR_1g075700 | 89.571 | 163 | 13 | 1 | 1 | 163 | 1 | 159 | 2.96e-106 | 303 |
| MS.gene52973.t1 | MTR_1g028960 | 34.921 | 189 | 118 | 1 | 19 | 202 | 35 | 223 | 3.90e-40 | 136 |
| MS.gene52973.t1 | MTR_3g090530 | 37.433 | 187 | 112 | 3 | 21 | 202 | 36 | 222 | 5.69e-39 | 133 |
| MS.gene52973.t1 | MTR_1g028970 | 34.574 | 188 | 119 | 1 | 19 | 202 | 36 | 223 | 7.50e-39 | 133 |
| MS.gene52973.t1 | MTR_3g090530 | 37.017 | 181 | 109 | 3 | 21 | 196 | 36 | 216 | 6.06e-36 | 125 |
| MS.gene52973.t1 | MTR_1g028970 | 33.708 | 178 | 114 | 1 | 19 | 192 | 36 | 213 | 2.93e-35 | 124 |
| MS.gene52973.t1 | MTR_1g028970 | 36.923 | 130 | 82 | 0 | 19 | 148 | 36 | 165 | 3.63e-27 | 102 |
| MS.gene52973.t1 | MTR_3g090530 | 37.984 | 129 | 79 | 1 | 21 | 148 | 36 | 164 | 3.64e-27 | 102 |
| MS.gene52973.t1 | MTR_3g090530 | 36.424 | 151 | 91 | 3 | 57 | 202 | 7 | 157 | 1.32e-26 | 100 |
| MS.gene52973.t1 | MTR_3g090530 | 35.862 | 145 | 88 | 3 | 57 | 196 | 7 | 151 | 1.61e-23 | 92.0 |
| MS.gene52973.t1 | MTR_3g090530 | 36.559 | 93 | 58 | 1 | 57 | 148 | 7 | 99 | 2.05e-14 | 67.0 |
| MS.gene52973.t1 | MTR_2g029520 | 24.476 | 143 | 104 | 1 | 18 | 160 | 28 | 166 | 1.92e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52973.t1 | AT2G33470 | 74.257 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 2.25e-116 | 329 |
| MS.gene52973.t1 | AT2G33470 | 74.257 | 202 | 52 | 0 | 1 | 202 | 1 | 202 | 2.25e-116 | 329 |
| MS.gene52973.t1 | AT1G21360 | 36.842 | 190 | 114 | 2 | 17 | 201 | 34 | 222 | 6.70e-38 | 130 |
| MS.gene52973.t1 | AT3G21260 | 34.444 | 180 | 114 | 1 | 26 | 201 | 53 | 232 | 7.80e-36 | 125 |
| MS.gene52973.t1 | AT1G21360 | 36.646 | 161 | 96 | 2 | 46 | 201 | 1 | 160 | 2.62e-30 | 109 |
| MS.gene52973.t1 | AT1G21360 | 37.879 | 132 | 82 | 0 | 17 | 148 | 34 | 165 | 1.81e-25 | 98.2 |
| MS.gene52973.t1 | AT3G21260 | 33.333 | 147 | 94 | 1 | 59 | 201 | 2 | 148 | 3.56e-25 | 96.3 |
| MS.gene52973.t1 | AT3G21260 | 32.857 | 140 | 90 | 1 | 66 | 201 | 4 | 143 | 2.39e-23 | 91.3 |
Find 49 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAGAATCACAAGTTTC+TGG | 0.197925 | 1.1:-56646304 | MS.gene52973:intron |
| AATTCTGTCACAGCCTTTCT+TGG | 0.198191 | 1.1:-56648630 | MS.gene52973:CDS |
| CTTCTTTAGAGTCTTGTTAT+AGG | 0.217183 | 1.1:+56646552 | None:intergenic |
| ACTATACAGGCAGTTGAATT+TGG | 0.221005 | 1.1:+56647385 | None:intergenic |
| CTTCAGAGCAATGGATTTCT+TGG | 0.230093 | 1.1:-56646638 | MS.gene52973:intron |
| GGTTGGATTAGATAAATATT+TGG | 0.236982 | 1.1:+56647406 | None:intergenic |
| ATTCTTATGGCAGATAAGTT+TGG | 0.303743 | 1.1:-56647840 | MS.gene52973:intron |
| AAACATATACTTCCTGTTAT+AGG | 0.315283 | 1.1:-56648599 | MS.gene52973:intron |
| TCCATGAATTTCTTCCTATC+AGG | 0.324564 | 1.1:+56646396 | None:intergenic |
| GAAACTTGTGATTCTCTTCA+AGG | 0.338646 | 1.1:+56646307 | None:intergenic |
| GAAATTCATGGAGGTGATAC+AGG | 0.370152 | 1.1:-56646385 | MS.gene52973:CDS |
| ATTCAACTGCCTGTATAGTT+TGG | 0.375332 | 1.1:-56647381 | MS.gene52973:CDS |
| AAAGCATGTAAAGTCTGAAC+AGG | 0.386552 | 1.1:-56648657 | MS.gene52973:CDS |
| GAGAAGTCCATTGGTACAAC+TGG | 0.387611 | 1.1:+56647319 | None:intergenic |
| CTCTAAAGAAGTGGCATGGC+TGG | 0.390523 | 1.1:-56646540 | MS.gene52973:CDS |
| ATTTGGATTGGATGAATTGA+AGG | 0.405788 | 1.1:-56645833 | MS.gene52973:CDS |
| CCGCATGCTCAATTAAGTTT+CGG | 0.407021 | 1.1:+56646605 | None:intergenic |
| ATAGAGCAATTACCTATAAC+AGG | 0.408205 | 1.1:+56648587 | None:intergenic |
| ATGAATTGAAGGCTTCATAA+AGG | 0.410184 | 1.1:-56645822 | None:intergenic |
| TACAGGCAGTTGAATTTGGT+TGG | 0.435495 | 1.1:+56647389 | None:intergenic |
| GTTGTACCAATGGACTTCTC+TGG | 0.441414 | 1.1:-56647316 | MS.gene52973:CDS |
| GGCACAGGCTCGATTTGGAT+TGG | 0.445538 | 1.1:-56645845 | MS.gene52973:intron |
| TGACATAGGTGGTAATATAT+CGG | 0.452189 | 1.1:-56647793 | MS.gene52973:intron |
| CAGAGCAATGGATTTCTTGG+TGG | 0.470381 | 1.1:-56646635 | MS.gene52973:CDS |
| CTACTTGTACCAAACTATAC+AGG | 0.482133 | 1.1:+56647372 | None:intergenic |
| TTGTGATTCTCTTCAAGGAA+AGG | 0.512151 | 1.1:+56646312 | None:intergenic |
| CGATGAAGCTTGCTCCTGAT+AGG | 0.512345 | 1.1:-56646410 | MS.gene52973:CDS |
| ATGGACTTCTCTGGCTTACA+AGG | 0.522903 | 1.1:-56647307 | MS.gene52973:intron |
| TCCTGATAGGAAGAAATTCA+TGG | 0.526707 | 1.1:-56646397 | MS.gene52973:CDS |
| CTTGTTATAGGAATCAGTAC+AGG | 0.533723 | 1.1:+56646564 | None:intergenic |
| ATGTAAAATCTTCAGAGCAA+TGG | 0.543737 | 1.1:-56646647 | MS.gene52973:intron |
| CACCTATGTCAGATTTGACA+AGG | 0.546300 | 1.1:+56647805 | None:intergenic |
| CCGAAACTTAATTGAGCATG+CGG | 0.552124 | 1.1:-56646605 | MS.gene52973:CDS |
| TGTTTGCACACATCCAAGAA+AGG | 0.556146 | 1.1:+56648617 | None:intergenic |
| ACTTAATTGAGCATGCGGAT+TGG | 0.558353 | 1.1:-56646600 | MS.gene52973:CDS |
| ATAACAAGACTCTAAAGAAG+TGG | 0.561369 | 1.1:-56646549 | MS.gene52973:CDS |
| GGTACAACTGGATGATGCCT+TGG | 0.564664 | 1.1:+56647331 | None:intergenic |
| GCATCATCCAGTTGTACCAA+TGG | 0.585383 | 1.1:-56647326 | MS.gene52973:CDS |
| AGTTGAAACTAAAACTGCCA+AGG | 0.615757 | 1.1:-56647348 | MS.gene52973:CDS |
| TGTAAGCCAGAGAAGTCCAT+TGG | 0.619617 | 1.1:+56647310 | None:intergenic |
| ATGGAGGTGATACAGGGAGG+TGG | 0.623912 | 1.1:-56646378 | MS.gene52973:CDS |
| ACCCTTGTCAAATCTGACAT+AGG | 0.626109 | 1.1:-56647807 | MS.gene52973:CDS |
| AAATTCATGGAGGTGATACA+GGG | 0.645139 | 1.1:-56646384 | MS.gene52973:CDS |
| AAGACTCTAAAGAAGTGGCA+TGG | 0.651111 | 1.1:-56646544 | MS.gene52973:CDS |
| CTTGTCAAATCTGACATAGG+TGG | 0.659236 | 1.1:-56647804 | MS.gene52973:CDS |
| AAGCATGTAAAGTCTGAACA+GGG | 0.684936 | 1.1:-56648656 | MS.gene52973:CDS |
| ACCTATGTCAGATTTGACAA+GGG | 0.696405 | 1.1:+56647806 | None:intergenic |
| TTCATGGAGGTGATACAGGG+AGG | 0.725186 | 1.1:-56646381 | MS.gene52973:CDS |
| TGATAGGAAGAAATTCATGG+AGG | 0.764708 | 1.1:-56646394 | MS.gene52973:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGATATTAATTTCTTAA+AGG | - | chr1.1:56648624-56648643 | MS.gene52973:CDS | 10.0% |
| !!! | AATATATATATTTCTAAACA+TGG | + | chr1.1:56648532-56648551 | None:intergenic | 10.0% |
| !!! | TCTAAATCATTTTAATTTTA+AGG | - | chr1.1:56646416-56646435 | MS.gene52973:CDS | 10.0% |
| !! | AAAAACAACTTAAATTGTAT+TGG | - | chr1.1:56647023-56647042 | MS.gene52973:intron | 15.0% |
| !! | AAATAAAGATTAGGAAAAAA+AGG | - | chr1.1:56647375-56647394 | MS.gene52973:CDS | 15.0% |
| !! | AATACTAACAAATTACATAA+AGG | + | chr1.1:56647824-56647843 | None:intergenic | 15.0% |
| !! | AATCATATGAGATATATATA+CGG | + | chr1.1:56646791-56646810 | None:intergenic | 15.0% |
| !! | AGAAATTAATATCTTTATCA+TGG | + | chr1.1:56648621-56648640 | None:intergenic | 15.0% |
| !! | GGAATATTAGATTAAATTTA+TGG | + | chr1.1:56646057-56646076 | None:intergenic | 15.0% |
| !! | TTCGATAAAAAATATAAGTT+TGG | + | chr1.1:56647002-56647021 | None:intergenic | 15.0% |
| !!! | TTTTCAAATTCATATTTAGT+TGG | - | chr1.1:56646916-56646935 | MS.gene52973:intron | 15.0% |
| !! | AATATTTCATTAAGAGGAAA+AGG | - | chr1.1:56646440-56646459 | MS.gene52973:intron | 20.0% |
| !! | ATCATATGAGATATATATAC+GGG | + | chr1.1:56646790-56646809 | None:intergenic | 20.0% |
| !! | TAAGGAAATATTTCATTAAG+AGG | - | chr1.1:56646434-56646453 | MS.gene52973:intron | 20.0% |
| !! | TATGCATTTGATTATTCAAA+CGG | + | chr1.1:56646015-56646034 | None:intergenic | 20.0% |
| !! | TGATACAAGTAATCATATTA+TGG | + | chr1.1:56646640-56646659 | None:intergenic | 20.0% |
| !!! | ACTACATTTTATAGAACTTT+TGG | - | chr1.1:56646963-56646982 | MS.gene52973:intron | 20.0% |
| !!! | CATGTTTTAATGTACAAATT+TGG | - | chr1.1:56646267-56646286 | MS.gene52973:intron | 20.0% |
| !!! | GGATTTGTTTTCTATTTTTT+AGG | - | chr1.1:56648029-56648048 | MS.gene52973:intron | 20.0% |
| !!! | TGTATATTTTTGATAGAGAT+GGG | + | chr1.1:56646490-56646509 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCAATTTATGTTG+AGG | - | chr1.1:56647719-56647738 | MS.gene52973:intron | 20.0% |
| ! | AAACATATACTTCCTGTTAT+AGG | - | chr1.1:56645921-56645940 | MS.gene52973:intron | 25.0% |
| ! | AACTTAAATAACCAAGAAAC+AGG | + | chr1.1:56646396-56646415 | None:intergenic | 25.0% |
| ! | ACATCAAAATGTCAAATCAA+AGG | + | chr1.1:56645961-56645980 | None:intergenic | 25.0% |
| ! | ACTTATAATTCCTACTGTTA+TGG | - | chr1.1:56647263-56647282 | MS.gene52973:intron | 25.0% |
| ! | ATACTAGCATGTTTAATGTA+AGG | - | chr1.1:56646201-56646220 | MS.gene52973:intron | 25.0% |
| ! | ATGCATTTGATTATTCAAAC+GGG | + | chr1.1:56646014-56646033 | None:intergenic | 25.0% |
| ! | GAAAAACACAAGATAAAAAC+AGG | + | chr1.1:56646765-56646784 | None:intergenic | 25.0% |
| ! | GAACAGTCAAAATAAAGATT+AGG | - | chr1.1:56647366-56647385 | MS.gene52973:CDS | 25.0% |
| ! | TAAGTTAAGCAGTAATTGTT+TGG | + | chr1.1:56647248-56647267 | None:intergenic | 25.0% |
| ! | TCTAGCTAAAATAATCCTTT+CGG | + | chr1.1:56647423-56647442 | None:intergenic | 25.0% |
| ! | TTATAATTGAAGCTACTGAA+AGG | + | chr1.1:56647690-56647709 | None:intergenic | 25.0% |
| ! | TTTATTATCTTTCAGCTCAA+TGG | - | chr1.1:56647659-56647678 | MS.gene52973:intron | 25.0% |
| !! | GGTTGGATTAGATAAATATT+TGG | + | chr1.1:56647117-56647136 | None:intergenic | 25.0% |
| !! | GTAACAAATATTTTACCTAC+AGG | - | chr1.1:56648084-56648103 | MS.gene52973:intron | 25.0% |
| !! | TTGGTTCTTTAATTATACTG+TGG | - | chr1.1:56646286-56646305 | MS.gene52973:intron | 25.0% |
| !!! | AACTTAAAAGCTTGTTGTTT+TGG | - | chr1.1:56648654-56648673 | MS.gene52973:CDS | 25.0% |
| !!! | CATGTTTTTTTTAGCATGTA+TGG | - | chr1.1:56646244-56646263 | MS.gene52973:intron | 25.0% |
| !!! | GATGTGTTTTATTTTGTGAT+GGG | - | chr1.1:56645976-56645995 | MS.gene52973:intron | 25.0% |
| !!! | GTGTATATTTTTGATAGAGA+TGG | + | chr1.1:56646491-56646510 | None:intergenic | 25.0% |
| !!! | TGATGTGTTTTATTTTGTGA+TGG | - | chr1.1:56645975-56645994 | MS.gene52973:intron | 25.0% |
| !!! | TTACTAATTTTGTTTTCCCA+TGG | - | chr1.1:56647768-56647787 | MS.gene52973:intron | 25.0% |
| AAAATGTTCACATACTGCTA+AGG | + | chr1.1:56646358-56646377 | None:intergenic | 30.0% | |
| AAATGTTCACATACTGCTAA+GGG | + | chr1.1:56646357-56646376 | None:intergenic | 30.0% | |
| ATAGAGCAATTACCTATAAC+AGG | + | chr1.1:56645936-56645955 | None:intergenic | 30.0% | |
| ATAGTATAGCCATATAACCA+TGG | + | chr1.1:56646865-56646884 | None:intergenic | 30.0% | |
| ATGCAATATCTGTGCATTTA+TGG | - | chr1.1:56646317-56646336 | MS.gene52973:CDS | 30.0% | |
| ATGTAAAATCTTCAGAGCAA+TGG | - | chr1.1:56647873-56647892 | MS.gene52973:intron | 30.0% | |
| ATTCTTATGGCAGATAAGTT+TGG | - | chr1.1:56646680-56646699 | MS.gene52973:intron | 30.0% | |
| CATGACACATTAATTGATCT+TGG | + | chr1.1:56648451-56648470 | None:intergenic | 30.0% | |
| CCAAAAATGCAATATGATAC+TGG | - | chr1.1:56647493-56647512 | MS.gene52973:intron | 30.0% | |
| GAAAAGGAATAGAAAACAAG+AGG | - | chr1.1:56646456-56646475 | MS.gene52973:intron | 30.0% | |
| TAGTACAGAGTAAGAATATG+TGG | + | chr1.1:56647066-56647085 | None:intergenic | 30.0% | |
| TATATGCATAAGATTCCGAA+AGG | - | chr1.1:56647405-56647424 | MS.gene52973:CDS | 30.0% | |
| TCATGTAGTATATGGTAACA+TGG | - | chr1.1:56648057-56648076 | MS.gene52973:intron | 30.0% | |
| TCGGAATCTTATGCATATAT+TGG | + | chr1.1:56647404-56647423 | None:intergenic | 30.0% | |
| TGACATAGGTGGTAATATAT+CGG | - | chr1.1:56646727-56646746 | MS.gene52973:intron | 30.0% | |
| TGCATAGACTTGAATTGATT+TGG | + | chr1.1:56646078-56646097 | None:intergenic | 30.0% | |
| TTGTGTTACAATTTGATGCT+TGG | - | chr1.1:56646597-56646616 | MS.gene52973:CDS | 30.0% | |
| ! | AAACAAATAAGCATTTGCTG+AGG | + | chr1.1:56647801-56647820 | None:intergenic | 30.0% |
| ! | ATAACAAGACTCTAAAGAAG+TGG | - | chr1.1:56647971-56647990 | MS.gene52973:intron | 30.0% |
| ! | ATTTGGATTGGATGAATTGA+AGG | - | chr1.1:56648687-56648706 | MS.gene52973:CDS | 30.0% |
| ! | CCAGTATCATATTGCATTTT+TGG | + | chr1.1:56647496-56647515 | None:intergenic | 30.0% |
| ! | TTTGTGATGGGAATATAGAA+TGG | - | chr1.1:56645988-56646007 | MS.gene52973:intron | 30.0% |
| !! | CTTCTTTAGAGTCTTGTTAT+AGG | + | chr1.1:56647971-56647990 | None:intergenic | 30.0% |
| !!! | ACTGTTTTTAACCTGTTTCT+TGG | - | chr1.1:56646382-56646401 | MS.gene52973:CDS | 30.0% |
| !!! | CTAATTGAGTCACTTTTTCA+AGG | - | chr1.1:56647611-56647630 | MS.gene52973:intron | 30.0% |
| AAAACATGCCACACAATCAT+CGG | + | chr1.1:56646232-56646251 | None:intergenic | 35.0% | |
| AAAGCATGTAAAGTCTGAAC+AGG | - | chr1.1:56645863-56645882 | MS.gene52973:intron | 35.0% | |
| AAATTCATGGAGGTGATACA+GGG | - | chr1.1:56648136-56648155 | MS.gene52973:intron | 35.0% | |
| AACCATGGTATGTCATCTTA+AGG | + | chr1.1:56646850-56646869 | None:intergenic | 35.0% | |
| AAGCATGTAAAGTCTGAACA+GGG | - | chr1.1:56645864-56645883 | MS.gene52973:intron | 35.0% | |
| AATGTTCACATACTGCTAAG+GGG | + | chr1.1:56646356-56646375 | None:intergenic | 35.0% | |
| ACATCTGCATGAAATCATCT+GGG | - | chr1.1:56648392-56648411 | MS.gene52973:intron | 35.0% | |
| ACCTATGTCAGATTTGACAA+GGG | + | chr1.1:56646717-56646736 | None:intergenic | 35.0% | |
| ACTATACAGGCAGTTGAATT+TGG | + | chr1.1:56647138-56647157 | None:intergenic | 35.0% | |
| AGTATGTGTCGAATATAAGG+AGG | + | chr1.1:56646186-56646205 | None:intergenic | 35.0% | |
| AGTTGAAACTAAAACTGCCA+AGG | - | chr1.1:56647172-56647191 | MS.gene52973:intron | 35.0% | |
| ATTATCTTTCAGCTCAATGG+TGG | - | chr1.1:56647662-56647681 | MS.gene52973:intron | 35.0% | |
| ATTCAACTGCCTGTATAGTT+TGG | - | chr1.1:56647139-56647158 | MS.gene52973:intron | 35.0% | |
| CATGCAAAACAAACTCTACT+TGG | + | chr1.1:56647339-56647358 | None:intergenic | 35.0% | |
| CTACTTGTACCAAACTATAC+AGG | + | chr1.1:56647151-56647170 | None:intergenic | 35.0% | |
| GAAACTTGTGATTCTCTTCA+AGG | + | chr1.1:56648216-56648235 | None:intergenic | 35.0% | |
| GATGACATACCATGGTTATA+TGG | - | chr1.1:56646853-56646872 | MS.gene52973:intron | 35.0% | |
| GATTGCTGCATTTATCTACA+AGG | - | chr1.1:56648275-56648294 | MS.gene52973:intron | 35.0% | |
| GCTAGTATGTGTCGAATATA+AGG | + | chr1.1:56646189-56646208 | None:intergenic | 35.0% | |
| TACATCTGCATGAAATCATC+TGG | - | chr1.1:56648391-56648410 | MS.gene52973:intron | 35.0% | |
| TAGGCTCAATAAAGATACAG+CGG | + | chr1.1:56646148-56646167 | None:intergenic | 35.0% | |
| TATACCTTGAAGTGTATGCT+GGG | - | chr1.1:56646882-56646901 | MS.gene52973:intron | 35.0% | |
| TATTTGGATTCCAATCTCTG+CGG | + | chr1.1:56647101-56647120 | None:intergenic | 35.0% | |
| TCCATGAATTTCTTCCTATC+AGG | + | chr1.1:56648127-56648146 | None:intergenic | 35.0% | |
| TCCTGATAGGAAGAAATTCA+TGG | - | chr1.1:56648123-56648142 | MS.gene52973:intron | 35.0% | |
| TGAAGAGAATCACAAGTTTC+TGG | - | chr1.1:56648216-56648235 | MS.gene52973:intron | 35.0% | |
| TGATAGGAAGAAATTCATGG+AGG | - | chr1.1:56648126-56648145 | MS.gene52973:intron | 35.0% | |
| TTATCTACAAGGCCTGAAAA+AGG | - | chr1.1:56648286-56648305 | MS.gene52973:intron | 35.0% | |
| TTCCTTAAGATGACATACCA+TGG | - | chr1.1:56646845-56646864 | MS.gene52973:intron | 35.0% | |
| TTGTGATTCTCTTCAAGGAA+AGG | + | chr1.1:56648211-56648230 | None:intergenic | 35.0% | |
| TTTGAGAACACCATAACAGT+AGG | + | chr1.1:56647276-56647295 | None:intergenic | 35.0% | |
| ! | CTTGTTATAGGAATCAGTAC+AGG | + | chr1.1:56647959-56647978 | None:intergenic | 35.0% |
| ! | GTTCATCTTGGATTTGAGAT+TGG | - | chr1.1:56648421-56648440 | MS.gene52973:intron | 35.0% |
| ! | TGTATCATTGTTGACTGAAC+TGG | - | chr1.1:56646653-56646672 | MS.gene52973:intron | 35.0% |
| !! | AGGAGTGTTCATGTAGTATA+TGG | - | chr1.1:56648049-56648068 | MS.gene52973:intron | 35.0% |
| !! | CTGAACTGGTGTTATTCTTA+TGG | - | chr1.1:56646667-56646686 | MS.gene52973:intron | 35.0% |
| !! | TAGTTCTAGCTTCACTGTAA+GGG | - | chr1.1:56648008-56648027 | MS.gene52973:intron | 35.0% |
| !! | TCCCTGCATTTTGAAAACAA+GGG | - | chr1.1:56648332-56648351 | MS.gene52973:intron | 35.0% |
| !! | TTCCCTGCATTTTGAAAACA+AGG | - | chr1.1:56648331-56648350 | MS.gene52973:intron | 35.0% |
| !!! | ATCCCTTGTTTTCAAAATGC+AGG | + | chr1.1:56648337-56648356 | None:intergenic | 35.0% |
| !!! | CACTTTTTCAAGGTGTGTTA+GGG | - | chr1.1:56647621-56647640 | MS.gene52973:intron | 35.0% |
| !!! | GCATTTTTGGTCCCAAATTT+TGG | + | chr1.1:56647483-56647502 | None:intergenic | 35.0% |
| !!! | TATGTTGAGGTTTTGAAGCT+CGG | - | chr1.1:56647732-56647751 | MS.gene52973:intron | 35.0% |
| !!! | TCACTTTTTCAAGGTGTGTT+AGG | - | chr1.1:56647620-56647639 | MS.gene52973:intron | 35.0% |
| !!! | TCCCTTGTTTTCAAAATGCA+GGG | + | chr1.1:56648336-56648355 | None:intergenic | 35.0% |
| AATGCAGAGTTTCAGGGATT+TGG | + | chr1.1:56648491-56648510 | None:intergenic | 40.0% | |
| AATTCTGTCACAGCCTTTCT+TGG | - | chr1.1:56645890-56645909 | MS.gene52973:intron | 40.0% | |
| ACACGATAATGCAGAGTTTC+AGG | + | chr1.1:56648498-56648517 | None:intergenic | 40.0% | |
| ACATACTGCTAAGGGGTAAA+AGG | + | chr1.1:56646349-56646368 | None:intergenic | 40.0% | |
| ACCCTTGTCAAATCTGACAT+AGG | - | chr1.1:56646713-56646732 | MS.gene52973:intron | 40.0% | |
| ACTTAATTGAGCATGCGGAT+TGG | - | chr1.1:56647920-56647939 | MS.gene52973:intron | 40.0% | |
| CACCTATGTCAGATTTGACA+AGG | + | chr1.1:56646718-56646737 | None:intergenic | 40.0% | |
| CACGATAATGCAGAGTTTCA+GGG | + | chr1.1:56648497-56648516 | None:intergenic | 40.0% | |
| CCGAAACTTAATTGAGCATG+CGG | - | chr1.1:56647915-56647934 | MS.gene52973:intron | 40.0% | |
| CCGCATGCTCAATTAAGTTT+CGG | + | chr1.1:56647918-56647937 | None:intergenic | 40.0% | |
| CTATACCTTGAAGTGTATGC+TGG | - | chr1.1:56646881-56646900 | MS.gene52973:intron | 40.0% | |
| CTTGTCAAATCTGACATAGG+TGG | - | chr1.1:56646716-56646735 | MS.gene52973:intron | 40.0% | |
| GAAATTCATGGAGGTGATAC+AGG | - | chr1.1:56648135-56648154 | MS.gene52973:intron | 40.0% | |
| GAGGAGTAAGGTAAAGAAGT+AGG | + | chr1.1:56646167-56646186 | None:intergenic | 40.0% | |
| GCACGTGCTTTCCAAAATTT+GGG | - | chr1.1:56647469-56647488 | MS.gene52973:intron | 40.0% | |
| GTCGAATATAAGGAGGAGTA+AGG | + | chr1.1:56646179-56646198 | None:intergenic | 40.0% | |
| GTGTGTGTGTGTTTGTGTAT+TGG | + | chr1.1:56648573-56648592 | None:intergenic | 40.0% | |
| TACAGGCAGTTGAATTTGGT+TGG | + | chr1.1:56647134-56647153 | None:intergenic | 40.0% | |
| TCTGGGAACAATGTTCATCT+TGG | - | chr1.1:56648409-56648428 | MS.gene52973:intron | 40.0% | |
| TGAAAAAGGAGACTGAACTG+TGG | - | chr1.1:56648300-56648319 | MS.gene52973:intron | 40.0% | |
| TGCACGTGCTTTCCAAAATT+TGG | - | chr1.1:56647468-56647487 | MS.gene52973:intron | 40.0% | |
| TGTGTCATGCATTTACTGCA+CGG | - | chr1.1:56648462-56648481 | MS.gene52973:intron | 40.0% | |
| TGTTTGCACACATCCAAGAA+AGG | + | chr1.1:56645906-56645925 | None:intergenic | 40.0% | |
| ! | AAGACTCTAAAGAAGTGGCA+TGG | - | chr1.1:56647976-56647995 | MS.gene52973:intron | 40.0% |
| ! | ACAGTTCAGTCTCCTTTTTC+AGG | + | chr1.1:56648301-56648320 | None:intergenic | 40.0% |
| ! | ATAGTGGCGATTTAGGTTAC+AGG | + | chr1.1:56646110-56646129 | None:intergenic | 40.0% |
| ! | CTTCAGAGCAATGGATTTCT+TGG | - | chr1.1:56647882-56647901 | MS.gene52973:intron | 40.0% |
| ! | GTCTTTTAAGCTGCAGATAG+TGG | + | chr1.1:56646126-56646145 | None:intergenic | 40.0% |
| !! | CTAGTTCTAGCTTCACTGTA+AGG | - | chr1.1:56648007-56648026 | MS.gene52973:intron | 40.0% |
| !!! | AAAGCTTGTTGTTTTGGCAC+AGG | - | chr1.1:56648660-56648679 | MS.gene52973:CDS | 40.0% |
| !!! | TTTTGTTTTCCCATGGTCAG+AGG | - | chr1.1:56647775-56647794 | MS.gene52973:intron | 40.0% |
| AGGTTACTCCGATGATTGTG+TGG | - | chr1.1:56646221-56646240 | MS.gene52973:intron | 45.0% | |
| GAGAAGTCCATTGGTACAAC+TGG | + | chr1.1:56647204-56647223 | None:intergenic | 45.0% | |
| GCATCATCCAGTTGTACCAA+TGG | - | chr1.1:56647194-56647213 | MS.gene52973:intron | 45.0% | |
| TACACCCAGCATACACTTCA+AGG | + | chr1.1:56646889-56646908 | None:intergenic | 45.0% | |
| TGTAAGCCAGAGAAGTCCAT+TGG | + | chr1.1:56647213-56647232 | None:intergenic | 45.0% | |
| TTGACTTTCACCGCAGAGAT+TGG | - | chr1.1:56647088-56647107 | MS.gene52973:intron | 45.0% | |
| ! | ATGGACTTCTCTGGCTTACA+AGG | - | chr1.1:56647213-56647232 | MS.gene52973:intron | 45.0% |
| ! | CAGAGCAATGGATTTCTTGG+TGG | - | chr1.1:56647885-56647904 | MS.gene52973:intron | 45.0% |
| ! | GACTGTTTTCGCTGCTACAT+TGG | - | chr1.1:56645833-56645852 | MS.gene52973:CDS | 45.0% |
| ! | GTTGTACCAATGGACTTCTC+TGG | - | chr1.1:56647204-56647223 | MS.gene52973:intron | 45.0% |
| ! | GTTTTCGCTGCTACATTGGA+AGG | - | chr1.1:56645837-56645856 | MS.gene52973:CDS | 45.0% |
| !! | GCAAGAATGTTTGCTATGCG+TGG | - | chr1.1:56647563-56647582 | MS.gene52973:intron | 45.0% |
| CAAGCTTCATCGCTACCTGT+AGG | + | chr1.1:56648102-56648121 | None:intergenic | 50.0% | |
| GGAGACTGAACTGTGGACTT+TGG | - | chr1.1:56648307-56648326 | MS.gene52973:intron | 50.0% | |
| GGTACAACTGGATGATGCCT+TGG | + | chr1.1:56647192-56647211 | None:intergenic | 50.0% | |
| TTCATGGAGGTGATACAGGG+AGG | - | chr1.1:56648139-56648158 | MS.gene52973:intron | 50.0% | |
| ! | CGATGAAGCTTGCTCCTGAT+AGG | - | chr1.1:56648110-56648129 | MS.gene52973:intron | 50.0% |
| ! | CTCTAAAGAAGTGGCATGGC+TGG | - | chr1.1:56647980-56647999 | MS.gene52973:intron | 50.0% |
| ! | GCTGCAGATAGTGGCGATTT+AGG | + | chr1.1:56646117-56646136 | None:intergenic | 50.0% |
| !! | GTTTTGGCACAGGCTCGATT+TGG | - | chr1.1:56648670-56648689 | MS.gene52973:CDS | 50.0% |
| ATGGAGGTGATACAGGGAGG+TGG | - | chr1.1:56648142-56648161 | MS.gene52973:intron | 55.0% | |
| TTGCTGAGGCCTCTGACCAT+GGG | + | chr1.1:56647787-56647806 | None:intergenic | 55.0% | |
| TTTGCTGAGGCCTCTGACCA+TGG | + | chr1.1:56647788-56647807 | None:intergenic | 55.0% | |
| !! | GGCACAGGCTCGATTTGGAT+TGG | - | chr1.1:56648675-56648694 | MS.gene52973:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 56645825 | 56648717 | 56645825 | ID=MS.gene52973 |
| chr1.1 | mRNA | 56645825 | 56648717 | 56645825 | ID=MS.gene52973.t1;Parent=MS.gene52973 |
| chr1.1 | exon | 56648600 | 56648717 | 56648600 | ID=MS.gene52973.t1.exon1;Parent=MS.gene52973.t1 |
| chr1.1 | CDS | 56648600 | 56648717 | 56648600 | ID=cds.MS.gene52973.t1;Parent=MS.gene52973.t1 |
| chr1.1 | exon | 56647794 | 56647849 | 56647794 | ID=MS.gene52973.t1.exon2;Parent=MS.gene52973.t1 |
| chr1.1 | CDS | 56647794 | 56647849 | 56647794 | ID=cds.MS.gene52973.t1;Parent=MS.gene52973.t1 |
| chr1.1 | exon | 56647308 | 56647438 | 56647308 | ID=MS.gene52973.t1.exon3;Parent=MS.gene52973.t1 |
| chr1.1 | CDS | 56647308 | 56647438 | 56647308 | ID=cds.MS.gene52973.t1;Parent=MS.gene52973.t1 |
| chr1.1 | exon | 56646519 | 56646654 | 56646519 | ID=MS.gene52973.t1.exon4;Parent=MS.gene52973.t1 |
| chr1.1 | CDS | 56646519 | 56646654 | 56646519 | ID=cds.MS.gene52973.t1;Parent=MS.gene52973.t1 |
| chr1.1 | exon | 56646305 | 56646436 | 56646305 | ID=MS.gene52973.t1.exon5;Parent=MS.gene52973.t1 |
| chr1.1 | CDS | 56646305 | 56646436 | 56646305 | ID=cds.MS.gene52973.t1;Parent=MS.gene52973.t1 |
| chr1.1 | exon | 56645825 | 56645860 | 56645825 | ID=MS.gene52973.t1.exon6;Parent=MS.gene52973.t1 |
| chr1.1 | CDS | 56645825 | 56645860 | 56645825 | ID=cds.MS.gene52973.t1;Parent=MS.gene52973.t1 |
| Gene Sequence |
| Protein sequence |
