Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55625.t1 | XP_013451524.1 | 98.8 | 586 | 7 | 0 | 1 | 586 | 1 | 586 | 0.00E+00 | 1110.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55625.t1 | Q9FKP1 | 50.2 | 580 | 269 | 6 | 9 | 586 | 6 | 567 | 2.2e-145 | 517.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55625.t1 | A0A072U799 | 98.8 | 586 | 7 | 0 | 1 | 586 | 1 | 586 | 0.0e+00 | 1110.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene55625 | 0.824413 | 8.18E-54 | -1.69E-46 |
| MS.gene049435 | MS.gene55625 | 0.815125 | 1.08E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene55625 | 0.806263 | 8.95E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene55625 | 0.858966 | 5.73E-63 | -1.69E-46 |
| MS.gene050303 | MS.gene55625 | 0.829447 | 5.12E-55 | -1.69E-46 |
| MS.gene050438 | MS.gene55625 | 0.816884 | 4.39E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene55625 | 0.822335 | 2.50E-53 | -1.69E-46 |
| MS.gene050586 | MS.gene55625 | 0.828703 | 7.76E-55 | -1.69E-46 |
| MS.gene050680 | MS.gene55625 | 0.814755 | 1.31E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene55625 | 0.806903 | 6.56E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene55625 | 0.846073 | 2.73E-59 | -1.69E-46 |
| MS.gene050808 | MS.gene55625 | 0.81015 | 1.33E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene55625 | 0.854827 | 9.50E-62 | -1.69E-46 |
| MS.gene050820 | MS.gene55625 | 0.801658 | 8.11E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene55625 | 0.804792 | 1.82E-49 | -1.69E-46 |
| MS.gene051180 | MS.gene55625 | 0.809694 | 1.67E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene55625 | 0.801212 | 1.00E-48 | -1.69E-46 |
| MS.gene051265 | MS.gene55625 | 0.835388 | 1.73E-56 | -1.69E-46 |
| MS.gene051328 | MS.gene55625 | 0.810168 | 1.32E-50 | -1.69E-46 |
| MS.gene051344 | MS.gene55625 | 0.816802 | 4.58E-52 | -1.69E-46 |
| MS.gene051626 | MS.gene55625 | 0.821237 | 4.49E-53 | -1.69E-46 |
| MS.gene051789 | MS.gene55625 | 0.835276 | 1.84E-56 | -1.69E-46 |
| MS.gene051860 | MS.gene55625 | 0.806776 | 6.98E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene55625 | 0.806765 | 7.02E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene55625 | 0.818663 | 1.74E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene55625 | 0.809 | 2.35E-50 | -1.69E-46 |
| MS.gene05288 | MS.gene55625 | 0.81999 | 8.69E-53 | -1.69E-46 |
| MS.gene05289 | MS.gene55625 | 0.814837 | 1.26E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene55625 | 0.830912 | 2.25E-55 | -1.69E-46 |
| MS.gene053074 | MS.gene55625 | 0.877127 | 8.06E-69 | -1.69E-46 |
| MS.gene053184 | MS.gene55625 | 0.818248 | 2.16E-52 | -1.69E-46 |
| MS.gene053630 | MS.gene55625 | 0.815848 | 7.49E-52 | -1.69E-46 |
| MS.gene054184 | MS.gene55625 | 0.832238 | 1.06E-55 | -1.69E-46 |
| MS.gene054185 | MS.gene55625 | 0.836099 | 1.14E-56 | -1.69E-46 |
| MS.gene054433 | MS.gene55625 | 0.814856 | 1.25E-51 | -1.69E-46 |
| MS.gene054596 | MS.gene55625 | 0.840429 | 8.74E-58 | -1.69E-46 |
| MS.gene054658 | MS.gene55625 | 0.81137 | 7.24E-51 | -1.69E-46 |
| MS.gene054713 | MS.gene55625 | 0.880266 | 6.32E-70 | -1.69E-46 |
| MS.gene05510 | MS.gene55625 | 0.826624 | 2.45E-54 | -1.69E-46 |
| MS.gene055356 | MS.gene55625 | 0.820202 | 7.77E-53 | -1.69E-46 |
| MS.gene055357 | MS.gene55625 | 0.803115 | 4.07E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene55625 | 0.824088 | 9.75E-54 | -1.69E-46 |
| MS.gene055359 | MS.gene55625 | 0.801825 | 7.50E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene55625 | 0.866403 | 2.93E-65 | -1.69E-46 |
| MS.gene055818 | MS.gene55625 | 0.808813 | 2.58E-50 | -1.69E-46 |
| MS.gene055860 | MS.gene55625 | 0.803179 | 3.94E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene55625 | 0.804279 | 2.33E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene55625 | 0.817182 | 3.77E-52 | -1.69E-46 |
| MS.gene057693 | MS.gene55625 | 0.816828 | 4.52E-52 | -1.69E-46 |
| MS.gene058042 | MS.gene55625 | 0.84802 | 8.00E-60 | -1.69E-46 |
| MS.gene058168 | MS.gene55625 | 0.869823 | 2.32E-66 | -1.69E-46 |
| MS.gene059006 | MS.gene55625 | 0.868989 | 4.33E-66 | -1.69E-46 |
| MS.gene059124 | MS.gene55625 | 0.839372 | 1.65E-57 | -1.69E-46 |
| MS.gene059128 | MS.gene55625 | 0.800339 | 1.51E-48 | -1.69E-46 |
| MS.gene05979 | MS.gene55625 | 0.805069 | 1.60E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene55625 | 0.800239 | 1.58E-48 | -1.69E-46 |
| MS.gene059937 | MS.gene55625 | 0.807012 | 6.22E-50 | -1.69E-46 |
| MS.gene060137 | MS.gene55625 | -0.833944 | 3.99E-56 | -1.69E-46 |
| MS.gene060322 | MS.gene55625 | 0.80872 | 2.70E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene55625 | 0.818638 | 1.77E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene55625 | 0.817018 | 4.10E-52 | -1.69E-46 |
| MS.gene060685 | MS.gene55625 | 0.813836 | 2.09E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene55625 | 0.82211 | 2.82E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene55625 | 0.862832 | 3.83E-64 | -1.69E-46 |
| MS.gene060998 | MS.gene55625 | 0.812386 | 4.35E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55625.t1 | MTR_6g027580 | 98.805 | 586 | 7 | 0 | 1 | 586 | 1 | 586 | 0.0 | 1161 |
| MS.gene55625.t1 | MTR_7g086690 | 49.436 | 532 | 250 | 7 | 67 | 586 | 59 | 583 | 3.66e-151 | 447 |
| MS.gene55625.t1 | MTR_8g021180 | 45.126 | 554 | 260 | 5 | 69 | 583 | 98 | 646 | 1.78e-149 | 445 |
| MS.gene55625.t1 | MTR_6g027570 | 48.270 | 578 | 278 | 8 | 16 | 586 | 9 | 572 | 3.00e-147 | 437 |
| MS.gene55625.t1 | MTR_7g113730 | 30.972 | 494 | 302 | 10 | 95 | 582 | 55 | 515 | 2.13e-50 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55625.t1 | AT5G17860 | 53.448 | 522 | 234 | 4 | 67 | 586 | 53 | 567 | 0.0 | 546 |
| MS.gene55625.t1 | AT5G17860 | 51.341 | 522 | 210 | 5 | 67 | 586 | 53 | 532 | 1.27e-174 | 505 |
| MS.gene55625.t1 | AT1G54115 | 41.680 | 619 | 293 | 9 | 26 | 583 | 27 | 638 | 9.95e-155 | 459 |
| MS.gene55625.t1 | AT3G14070 | 44.203 | 552 | 265 | 6 | 69 | 583 | 92 | 637 | 9.86e-154 | 456 |
| MS.gene55625.t1 | AT5G17850 | 48.177 | 521 | 254 | 6 | 69 | 583 | 46 | 556 | 3.17e-138 | 413 |
| MS.gene55625.t1 | AT5G17850 | 48.177 | 521 | 254 | 6 | 69 | 583 | 46 | 556 | 3.17e-138 | 413 |
| MS.gene55625.t1 | AT1G08960 | 32.115 | 520 | 303 | 10 | 77 | 581 | 58 | 542 | 3.52e-64 | 220 |
Find 81 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTGTTTCTTGTTTATA+AGG | 0.167874 | 6.2:-19435840 | MS.gene55625:CDS |
| AGTTGGTTTAAATAGCATTT+TGG | 0.186213 | 6.2:-19437000 | MS.gene55625:CDS |
| TATTTAACATCATCATTAAT+TGG | 0.192192 | 6.2:-19436372 | MS.gene55625:CDS |
| TTAGGAACAACATAAGAATT+AGG | 0.200723 | 6.2:+19435985 | None:intergenic |
| TCCTAAGGATAGTTCACTTT+TGG | 0.246796 | 6.2:-19435968 | MS.gene55625:CDS |
| TCATTAATTGGAATTGTCTT+TGG | 0.252260 | 6.2:-19436360 | MS.gene55625:CDS |
| ATTTCAATTGGATATGTAAT+TGG | 0.264822 | 6.2:-19436207 | MS.gene55625:CDS |
| CTTGGAAATTCACCAATTCT+TGG | 0.270067 | 6.2:-19437230 | MS.gene55625:CDS |
| GAATCCGGCATACCATTATT+AGG | 0.272331 | 6.2:-19436690 | MS.gene55625:CDS |
| GGTGCACAAATTGCTGTTTC+AGG | 0.282821 | 6.2:-19436084 | MS.gene55625:CDS |
| CAAGAAGATGTTTGTTTCCT+TGG | 0.294111 | 6.2:-19436299 | MS.gene55625:CDS |
| ACCTCTTGTTCTTTCAGCAT+GGG | 0.313872 | 6.2:-19436016 | MS.gene55625:CDS |
| TAGAAACTTCCACAAGTAAT+AGG | 0.324007 | 6.2:+19436569 | None:intergenic |
| TATGCAACTAAACTACTCTT+TGG | 0.330716 | 6.2:+19436393 | None:intergenic |
| AGGATTGATATAAAGTTTGA+TGG | 0.349971 | 6.2:+19437454 | None:intergenic |
| TTTATCAACTGAAACTTCAT+TGG | 0.356036 | 6.2:+19436920 | None:intergenic |
| GAGTTGGAAGTGAAAGTATA+AGG | 0.357006 | 6.2:+19437542 | None:intergenic |
| CAAGGAAACAAACATCTTCT+TGG | 0.367485 | 6.2:+19436300 | None:intergenic |
| ACTTCAATACTTTGTAAAAT+CGG | 0.368947 | 6.2:+19436621 | None:intergenic |
| AAACAAGAAACAAAGGTAAA+TGG | 0.374670 | 6.2:+19435846 | None:intergenic |
| ACAAAGTATTGAAGTAAAAG+AGG | 0.381832 | 6.2:-19436613 | MS.gene55625:CDS |
| TACCTCTTGTTCTTTCAGCA+TGG | 0.389379 | 6.2:-19436017 | MS.gene55625:CDS |
| CAAAGAATTGCGAATAAAAT+CGG | 0.396842 | 6.2:+19436441 | None:intergenic |
| TAGGAACAACATAAGAATTA+GGG | 0.400579 | 6.2:+19435986 | None:intergenic |
| AAATGAGAATTAGAATTTGA+AGG | 0.413721 | 6.2:+19437434 | None:intergenic |
| TCGTCGGCATAACCTAATAA+TGG | 0.416187 | 6.2:+19436678 | None:intergenic |
| TGTGATGATTTAGTTGAATC+CGG | 0.417427 | 6.2:-19436705 | MS.gene55625:CDS |
| CTCCTTATCATCATTTCCAT+TGG | 0.424094 | 6.2:-19436849 | MS.gene55625:CDS |
| CTAGGTGATTTGATAGCAAA+TGG | 0.424425 | 6.2:-19436135 | MS.gene55625:CDS |
| TGTTTGTTTCCTTGGCTAGC+TGG | 0.426986 | 6.2:-19436291 | MS.gene55625:CDS |
| TTTGTTTCTACAGCTGTCTT+AGG | 0.432757 | 6.2:-19436966 | MS.gene55625:CDS |
| GGAGAATGAACAAAGAGAAA+AGG | 0.434641 | 6.2:+19436868 | None:intergenic |
| TAATTCTTATGTTGTTCCTA+AGG | 0.435073 | 6.2:-19435983 | MS.gene55625:CDS |
| CGGTTGTGAATGAAGAAAAC+TGG | 0.441944 | 6.2:-19436500 | MS.gene55625:CDS |
| CATTCTGATTGTAGATCAAA+AGG | 0.451621 | 6.2:-19437287 | MS.gene55625:CDS |
| ATAAGGTTAGCCATGGCAAT+TGG | 0.456604 | 6.2:-19435823 | MS.gene55625:CDS |
| AGACTTTCTCCAACCATAGC+TGG | 0.456635 | 6.2:-19437104 | MS.gene55625:CDS |
| GCTGTTTCAGGTTGTTATGC+TGG | 0.461252 | 6.2:-19436072 | MS.gene55625:CDS |
| TCTTTATGTTTGTGCCGTCT+CGG | 0.461328 | 6.2:-19436781 | MS.gene55625:CDS |
| TTCCAATGGAAATGATGATA+AGG | 0.463870 | 6.2:+19436847 | None:intergenic |
| CATAAAGAAAATAGATAGAA+AGG | 0.470467 | 6.2:+19436796 | None:intergenic |
| TTGGCTTGGGGAAATTCTCT+AGG | 0.480332 | 6.2:-19436153 | MS.gene55625:CDS |
| AATTCTTTGCAATACACAAA+TGG | 0.485520 | 6.2:-19436427 | MS.gene55625:CDS |
| ACGGTTAGCCCTAAAATTGA+AGG | 0.489309 | 6.2:+19436177 | None:intergenic |
| CAAGAATTGGTGAATTTCCA+AGG | 0.494536 | 6.2:+19437231 | None:intergenic |
| TGGAATTGTCTTTGGAAACA+TGG | 0.496793 | 6.2:-19436352 | MS.gene55625:CDS |
| ACAACACTAGCAAAGAAATC+AGG | 0.497139 | 6.2:+19437050 | None:intergenic |
| CCTCTTGTTCTTTCAGCATG+GGG | 0.507419 | 6.2:-19436015 | MS.gene55625:CDS |
| ACCAAGAAAACTCACTATAC+CGG | 0.516679 | 6.2:-19436520 | MS.gene55625:CDS |
| TGCGAATAAAATCGGTGCTA+AGG | 0.517302 | 6.2:+19436449 | None:intergenic |
| ACATTACTCTCTCTAGGTAA+TGG | 0.517323 | 6.2:-19437077 | MS.gene55625:CDS |
| AGTAGTGTGTGACCAAGAAT+TGG | 0.519119 | 6.2:+19437218 | None:intergenic |
| CCCAAAAGTGAACTATCCTT+AGG | 0.527760 | 6.2:+19435967 | None:intergenic |
| CTTGTTTATAAGGTTAGCCA+TGG | 0.529470 | 6.2:-19435830 | MS.gene55625:CDS |
| TGAAGAGGAAGGATGTGTTG+AGG | 0.534769 | 6.2:+19437489 | None:intergenic |
| AGAATTTCCCCAAGCCAAAA+CGG | 0.537248 | 6.2:+19436158 | None:intergenic |
| CTCTTGTTCTTTCAGCATGG+GGG | 0.543298 | 6.2:-19436014 | MS.gene55625:CDS |
| GGAAACAAACATCTTCTTGG+TGG | 0.548039 | 6.2:+19436303 | None:intergenic |
| TCTTGTTCTTTCAGCATGGG+GGG | 0.549335 | 6.2:-19436013 | MS.gene55625:CDS |
| TTGTTTCCTTGGCTAGCTGG+TGG | 0.552371 | 6.2:-19436288 | MS.gene55625:CDS |
| GAGTAATGTTACACCAGCTA+TGG | 0.556234 | 6.2:+19437091 | None:intergenic |
| AGTTCAAACAATGGCGCAGT+TGG | 0.556253 | 6.2:-19437017 | MS.gene55625:CDS |
| CAATACACAAATGGAAAATG+TGG | 0.556780 | 6.2:-19436418 | MS.gene55625:CDS |
| CCCCATGCTGAAAGAACAAG+AGG | 0.576639 | 6.2:+19436015 | None:intergenic |
| ATAACCTAATAATGGTATGC+CGG | 0.577118 | 6.2:+19436686 | None:intergenic |
| GGTGTAACATTACTCTCTCT+AGG | 0.578728 | 6.2:-19437083 | MS.gene55625:CDS |
| AAAGTAATTTGAAGCCGTGT+CGG | 0.579217 | 6.2:+19437160 | None:intergenic |
| ATCATTATCAGTATCATCGT+CGG | 0.584965 | 6.2:+19436662 | None:intergenic |
| ATTAAGAGCACCAATTGCCA+TGG | 0.587028 | 6.2:+19435813 | None:intergenic |
| GATGAAATGTGTGGCCGAGA+CGG | 0.594481 | 6.2:+19436767 | None:intergenic |
| TTTGATAGCAAATGGTGCTA+TGG | 0.595159 | 6.2:-19436127 | MS.gene55625:CDS |
| AATGTTACACCAGCTATGGT+TGG | 0.602466 | 6.2:+19437095 | None:intergenic |
| GTAACTGATATAACCGCGTA+TGG | 0.604588 | 6.2:+19436471 | None:intergenic |
| TCTTTCACAAGTTCAAACAA+TGG | 0.607460 | 6.2:-19437026 | MS.gene55625:CDS |
| CACTAGTGAGAATTCTAGCA+TGG | 0.614238 | 6.2:+19437384 | None:intergenic |
| GAAAATCCACCAGCTAGCCA+AGG | 0.618132 | 6.2:+19436282 | None:intergenic |
| CCCATCAAAATATTGAACAT+AGG | 0.620623 | 6.2:+19436048 | None:intergenic |
| ACCTTATAAACAAGAAACAA+AGG | 0.640232 | 6.2:+19435839 | None:intergenic |
| ATGGACTTATATAATAGCTG+AGG | 0.679474 | 6.2:-19436247 | MS.gene55625:CDS |
| AAACTGGTCGAAACCATACG+CGG | 0.707194 | 6.2:-19436484 | MS.gene55625:CDS |
| AACTTCGTAGATGAAATGTG+TGG | 0.768427 | 6.2:+19436758 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAACATCATCATTAAT+TGG | - | chr6.2:19436986-19437005 | MS.gene55625:CDS | 15.0% |
| !! | AAAGTTTGATGGAAAAAAAT+AGG | + | chr6.2:19435896-19435915 | None:intergenic | 20.0% |
| !! | AAATGAGAATTAGAATTTGA+AGG | + | chr6.2:19435927-19435946 | None:intergenic | 20.0% |
| !! | ACTTCAATACTTTGTAAAAT+CGG | + | chr6.2:19436740-19436759 | None:intergenic | 20.0% |
| !! | ATTTCAATTGGATATGTAAT+TGG | - | chr6.2:19437151-19437170 | MS.gene55625:CDS | 20.0% |
| !! | CATAAAGAAAATAGATAGAA+AGG | + | chr6.2:19436565-19436584 | None:intergenic | 20.0% |
| !!! | TTTTAGTTAAGAAGAATATG+AGG | - | chr6.2:19437458-19437477 | MS.gene55625:CDS | 20.0% |
| ! | AAAAAGACTAATCTTTCCAA+TGG | + | chr6.2:19436528-19436547 | None:intergenic | 25.0% |
| ! | AAACAAGAAACAAAGGTAAA+TGG | + | chr6.2:19437515-19437534 | None:intergenic | 25.0% |
| ! | AATTCTTTGCAATACACAAA+TGG | - | chr6.2:19436931-19436950 | MS.gene55625:CDS | 25.0% |
| ! | ACCTTATAAACAAGAAACAA+AGG | + | chr6.2:19437522-19437541 | None:intergenic | 25.0% |
| ! | AGGATTGATATAAAGTTTGA+TGG | + | chr6.2:19435907-19435926 | None:intergenic | 25.0% |
| ! | CAAAGAATTGCGAATAAAAT+CGG | + | chr6.2:19436920-19436939 | None:intergenic | 25.0% |
| ! | TAATTCTTATGTTGTTCCTA+AGG | - | chr6.2:19437375-19437394 | MS.gene55625:CDS | 25.0% |
| ! | TAGGAACAACATAAGAATTA+GGG | + | chr6.2:19437375-19437394 | None:intergenic | 25.0% |
| ! | TCATTAATTGGAATTGTCTT+TGG | - | chr6.2:19436998-19437017 | MS.gene55625:CDS | 25.0% |
| ! | TTAGGAACAACATAAGAATT+AGG | + | chr6.2:19437376-19437395 | None:intergenic | 25.0% |
| ! | TTTATCAACTGAAACTTCAT+TGG | + | chr6.2:19436441-19436460 | None:intergenic | 25.0% |
| !! | ACCTTTGTTTCTTGTTTATA+AGG | - | chr6.2:19437518-19437537 | MS.gene55625:CDS | 25.0% |
| !! | CAAATCTTTTATTGTAACCT+TGG | - | chr6.2:19436110-19436129 | MS.gene55625:CDS | 25.0% |
| !! | TTGGTTTAAATAGCATTTTG+GGG | - | chr6.2:19436360-19436379 | MS.gene55625:CDS | 25.0% |
| !!! | AATATTGTTTTTGATGGTAG+GGG | - | chr6.2:19437417-19437436 | MS.gene55625:CDS | 25.0% |
| !!! | ACAAAGTATTGAAGTAAAAG+AGG | - | chr6.2:19436745-19436764 | MS.gene55625:CDS | 25.0% |
| !!! | ACAATATTGTTTTTGATGGT+AGG | - | chr6.2:19437415-19437434 | MS.gene55625:CDS | 25.0% |
| !!! | AGTTGGTTTAAATAGCATTT+TGG | - | chr6.2:19436358-19436377 | MS.gene55625:CDS | 25.0% |
| !!! | ATTGGAAAGATTAGTCTTTT+TGG | - | chr6.2:19436527-19436546 | MS.gene55625:CDS | 25.0% |
| !!! | CAATATTGTTTTTGATGGTA+GGG | - | chr6.2:19437416-19437435 | MS.gene55625:CDS | 25.0% |
| !!! | CCTATGTTCAATATTTTGAT+GGG | - | chr6.2:19437310-19437329 | MS.gene55625:CDS | 25.0% |
| !!! | GTTGGTTTAAATAGCATTTT+GGG | - | chr6.2:19436359-19436378 | MS.gene55625:CDS | 25.0% |
| !!! | GTTTCACTTTTGATTTCAAT+TGG | - | chr6.2:19437139-19437158 | MS.gene55625:CDS | 25.0% |
| !!! | TCAATATTTTGATGGGTTTA+GGG | - | chr6.2:19437317-19437336 | MS.gene55625:CDS | 25.0% |
| !!! | TCCTATGTTCAATATTTTGA+TGG | - | chr6.2:19437309-19437328 | MS.gene55625:CDS | 25.0% |
| !!! | TTCAATATTTTGATGGGTTT+AGG | - | chr6.2:19437316-19437335 | MS.gene55625:CDS | 25.0% |
| !!! | TTTTTAGTACCTATTACTTG+TGG | - | chr6.2:19436780-19436799 | MS.gene55625:CDS | 25.0% |
| AAAAAATAGGATGAAGAGGA+AGG | + | chr6.2:19435883-19435902 | None:intergenic | 30.0% | |
| ATAACCTAATAATGGTATGC+CGG | + | chr6.2:19436675-19436694 | None:intergenic | 30.0% | |
| ATCATTATCAGTATCATCGT+CGG | + | chr6.2:19436699-19436718 | None:intergenic | 30.0% | |
| ATGGACTTATATAATAGCTG+AGG | - | chr6.2:19437111-19437130 | MS.gene55625:CDS | 30.0% | |
| CAATACACAAATGGAAAATG+TGG | - | chr6.2:19436940-19436959 | MS.gene55625:CDS | 30.0% | |
| CATTCTGATTGTAGATCAAA+AGG | - | chr6.2:19436071-19436090 | MS.gene55625:CDS | 30.0% | |
| CCCATCAAAATATTGAACAT+AGG | + | chr6.2:19437313-19437332 | None:intergenic | 30.0% | |
| TAGAAACTTCCACAAGTAAT+AGG | + | chr6.2:19436792-19436811 | None:intergenic | 30.0% | |
| TATGCAACTAAACTACTCTT+TGG | + | chr6.2:19436968-19436987 | None:intergenic | 30.0% | |
| TCTTTCACAAGTTCAAACAA+TGG | - | chr6.2:19436332-19436351 | MS.gene55625:CDS | 30.0% | |
| TGGAAAAAAATAGGATGAAG+AGG | + | chr6.2:19435887-19435906 | None:intergenic | 30.0% | |
| TGTGATGATTTAGTTGAATC+CGG | - | chr6.2:19436653-19436672 | MS.gene55625:CDS | 30.0% | |
| TTCCAATGGAAATGATGATA+AGG | + | chr6.2:19436514-19436533 | None:intergenic | 30.0% | |
| ! | AGTTTTCTTGGTAAACAAAG+TGG | + | chr6.2:19436830-19436849 | None:intergenic | 30.0% |
| ! | ATGAGGCTTGATAAGTTTTT+AGG | - | chr6.2:19437475-19437494 | MS.gene55625:CDS | 30.0% |
| ! | GTGTTAGTCCTTCAATTTTA+GGG | - | chr6.2:19437173-19437192 | MS.gene55625:CDS | 30.0% |
| ! | TGGTTTAAATAGCATTTTGG+GGG | - | chr6.2:19436361-19436380 | MS.gene55625:CDS | 30.0% |
| !!! | GAGTTTTTTTGGTTGTGATT+TGG | + | chr6.2:19435841-19435860 | None:intergenic | 30.0% |
| AACTTCGTAGATGAAATGTG+TGG | + | chr6.2:19436603-19436622 | None:intergenic | 35.0% | |
| ACAACACTAGCAAAGAAATC+AGG | + | chr6.2:19436311-19436330 | None:intergenic | 35.0% | |
| ACATTACTCTCTCTAGGTAA+TGG | - | chr6.2:19436281-19436300 | MS.gene55625:CDS | 35.0% | |
| ACCAAGAAAACTCACTATAC+CGG | - | chr6.2:19436838-19436857 | MS.gene55625:CDS | 35.0% | |
| CAAGAAGATGTTTGTTTCCT+TGG | - | chr6.2:19437059-19437078 | MS.gene55625:CDS | 35.0% | |
| CAAGAATTGGTGAATTTCCA+AGG | + | chr6.2:19436130-19436149 | None:intergenic | 35.0% | |
| CAAGGAAACAAACATCTTCT+TGG | + | chr6.2:19437061-19437080 | None:intergenic | 35.0% | |
| CTCCTTATCATCATTTCCAT+TGG | - | chr6.2:19436509-19436528 | MS.gene55625:CDS | 35.0% | |
| CTTGGAAATTCACCAATTCT+TGG | - | chr6.2:19436128-19436147 | MS.gene55625:CDS | 35.0% | |
| GGAGAATGAACAAAGAGAAA+AGG | + | chr6.2:19436493-19436512 | None:intergenic | 35.0% | |
| ! | AAAGTAATTTGAAGCCGTGT+CGG | + | chr6.2:19436201-19436220 | None:intergenic | 35.0% |
| ! | ATTCTATCTTTTAGCCGACA+CGG | - | chr6.2:19436184-19436203 | MS.gene55625:CDS | 35.0% |
| ! | CAGTTTTCTTCATTCACAAC+CGG | + | chr6.2:19436860-19436879 | None:intergenic | 35.0% |
| ! | CTAGGTGATTTGATAGCAAA+TGG | - | chr6.2:19437223-19437242 | MS.gene55625:CDS | 35.0% |
| ! | CTTGTTTATAAGGTTAGCCA+TGG | - | chr6.2:19437528-19437547 | MS.gene55625:CDS | 35.0% |
| ! | GAGTTGGAAGTGAAAGTATA+AGG | + | chr6.2:19435819-19435838 | None:intergenic | 35.0% |
| ! | GATTTTCAATGAGTGTGACA+TGG | - | chr6.2:19437092-19437111 | MS.gene55625:CDS | 35.0% |
| ! | GGTGTTAGTCCTTCAATTTT+AGG | - | chr6.2:19437172-19437191 | MS.gene55625:CDS | 35.0% |
| ! | GGTTTAAATAGCATTTTGGG+GGG | - | chr6.2:19436362-19436381 | MS.gene55625:CDS | 35.0% |
| ! | TACTTTTGCACATCTCTAGA+AGG | - | chr6.2:19436215-19436234 | MS.gene55625:CDS | 35.0% |
| ! | TCCTAAGGATAGTTCACTTT+TGG | - | chr6.2:19437390-19437409 | MS.gene55625:CDS | 35.0% |
| ! | TGGAATTGTCTTTGGAAACA+TGG | - | chr6.2:19437006-19437025 | MS.gene55625:CDS | 35.0% |
| ! | TTTGATAGCAAATGGTGCTA+TGG | - | chr6.2:19437231-19437250 | MS.gene55625:CDS | 35.0% |
| !! | AATGGTGCTATGGCTAAAAA+TGG | - | chr6.2:19437241-19437260 | MS.gene55625:CDS | 35.0% |
| !! | CCTAAGGATAGTTCACTTTT+GGG | - | chr6.2:19437391-19437410 | MS.gene55625:CDS | 35.0% |
| !! | CTAAGGATAGTTCACTTTTG+GGG | - | chr6.2:19437392-19437411 | MS.gene55625:CDS | 35.0% |
| !! | CTTGATAAGTTTTTAGGAGC+TGG | - | chr6.2:19437481-19437500 | MS.gene55625:CDS | 35.0% |
| !! | TTTGTTTCTACAGCTGTCTT+AGG | - | chr6.2:19436392-19436411 | MS.gene55625:CDS | 35.0% |
| !! | TTTTGGTTGTGATTTGGAGT+TGG | + | chr6.2:19435835-19435854 | None:intergenic | 35.0% |
| !!! | AATTTTAGGGCTAACCGTTT+TGG | - | chr6.2:19437186-19437205 | MS.gene55625:CDS | 35.0% |
| !!! | AGGAGAAGAGTGAGTTTTTT+TGG | + | chr6.2:19435852-19435871 | None:intergenic | 35.0% |
| !!! | GGGGACAATATTGTTTTTGA+TGG | - | chr6.2:19437411-19437430 | MS.gene55625:CDS | 35.0% |
| !!! | GTCACACACTACTTGTTTTA+TGG | - | chr6.2:19436150-19436169 | MS.gene55625:CDS | 35.0% |
| AATGTTACACCAGCTATGGT+TGG | + | chr6.2:19436266-19436285 | None:intergenic | 40.0% | |
| ACCTCTTGTTCTTTCAGCAT+GGG | - | chr6.2:19437342-19437361 | MS.gene55625:CDS | 40.0% | |
| AGAATTTCCCCAAGCCAAAA+CGG | + | chr6.2:19437203-19437222 | None:intergenic | 40.0% | |
| AGTAGTGTGTGACCAAGAAT+TGG | + | chr6.2:19436143-19436162 | None:intergenic | 40.0% | |
| CACTAGTGAGAATTCTAGCA+TGG | + | chr6.2:19435977-19435996 | None:intergenic | 40.0% | |
| CCCAAAAGTGAACTATCCTT+AGG | + | chr6.2:19437394-19437413 | None:intergenic | 40.0% | |
| CGGTTGTGAATGAAGAAAAC+TGG | - | chr6.2:19436858-19436877 | MS.gene55625:CDS | 40.0% | |
| GAATCCGGCATACCATTATT+AGG | - | chr6.2:19436668-19436687 | MS.gene55625:CDS | 40.0% | |
| GAGTAATGTTACACCAGCTA+TGG | + | chr6.2:19436270-19436289 | None:intergenic | 40.0% | |
| GGAAACAAACATCTTCTTGG+TGG | + | chr6.2:19437058-19437077 | None:intergenic | 40.0% | |
| GGTGTAACATTACTCTCTCT+AGG | - | chr6.2:19436275-19436294 | MS.gene55625:CDS | 40.0% | |
| GTAACTGATATAACCGCGTA+TGG | + | chr6.2:19436890-19436909 | None:intergenic | 40.0% | |
| TACCTCTTGTTCTTTCAGCA+TGG | - | chr6.2:19437341-19437360 | MS.gene55625:CDS | 40.0% | |
| TCGTCGGCATAACCTAATAA+TGG | + | chr6.2:19436683-19436702 | None:intergenic | 40.0% | |
| TCTTTATGTTTGTGCCGTCT+CGG | - | chr6.2:19436577-19436596 | MS.gene55625:CDS | 40.0% | |
| ! | ACCGGTATAGTGAGTTTTCT+TGG | + | chr6.2:19436842-19436861 | None:intergenic | 40.0% |
| ! | ACGGTTAGCCCTAAAATTGA+AGG | + | chr6.2:19437184-19437203 | None:intergenic | 40.0% |
| ! | AGCATGGTTGAAGAGTTTTG+AGG | + | chr6.2:19435961-19435980 | None:intergenic | 40.0% |
| ! | ATAAGGTTAGCCATGGCAAT+TGG | - | chr6.2:19437535-19437554 | MS.gene55625:CDS | 40.0% |
| ! | GCTAAAAATGGTGGTGTTGA+TGG | - | chr6.2:19437253-19437272 | MS.gene55625:CDS | 40.0% |
| !! | ATTAAGAGCACCAATTGCCA+TGG | + | chr6.2:19437548-19437567 | None:intergenic | 40.0% |
| !! | TGCGAATAAAATCGGTGCTA+AGG | + | chr6.2:19436912-19436931 | None:intergenic | 40.0% |
| !!! | TTTTGATGGTAGGGGTACTT+TGG | - | chr6.2:19437425-19437444 | MS.gene55625:CDS | 40.0% |
| AAACTGGTCGAAACCATACG+CGG | - | chr6.2:19436874-19436893 | MS.gene55625:CDS | 45.0% | |
| AGACTTTCTCCAACCATAGC+TGG | - | chr6.2:19436254-19436273 | MS.gene55625:CDS | 45.0% | |
| AGTTCAAACAATGGCGCAGT+TGG | - | chr6.2:19436341-19436360 | MS.gene55625:CDS | 45.0% | |
| CCTCTTGTTCTTTCAGCATG+GGG | - | chr6.2:19437343-19437362 | MS.gene55625:CDS | 45.0% | |
| CTCTTGTTCTTTCAGCATGG+GGG | - | chr6.2:19437344-19437363 | MS.gene55625:CDS | 45.0% | |
| TCTTGTTCTTTCAGCATGGG+GGG | - | chr6.2:19437345-19437364 | MS.gene55625:CDS | 45.0% | |
| TGAAGAGGAAGGATGTGTTG+AGG | + | chr6.2:19435872-19435891 | None:intergenic | 45.0% | |
| TGTTTGTTTCCTTGGCTAGC+TGG | - | chr6.2:19437067-19437086 | MS.gene55625:CDS | 45.0% | |
| ! | GGTGCTATGGCTAAAAATGG+TGG | - | chr6.2:19437244-19437263 | MS.gene55625:CDS | 45.0% |
| !! | GCTGTTTCAGGTTGTTATGC+TGG | - | chr6.2:19437286-19437305 | MS.gene55625:CDS | 45.0% |
| !! | GGTGCACAAATTGCTGTTTC+AGG | - | chr6.2:19437274-19437293 | MS.gene55625:CDS | 45.0% |
| !! | TTGGCTTGGGGAAATTCTCT+AGG | - | chr6.2:19437205-19437224 | MS.gene55625:CDS | 45.0% |
| CCCCATGCTGAAAGAACAAG+AGG | + | chr6.2:19437346-19437365 | None:intergenic | 50.0% | |
| GAAAATCCACCAGCTAGCCA+AGG | + | chr6.2:19437079-19437098 | None:intergenic | 50.0% | |
| GATGAAATGTGTGGCCGAGA+CGG | + | chr6.2:19436594-19436613 | None:intergenic | 50.0% | |
| ! | TTGTTTCCTTGGCTAGCTGG+TGG | - | chr6.2:19437070-19437089 | MS.gene55625:CDS | 50.0% |
| !!! | AGGGCTAACCGTTTTGGCTT+GGG | - | chr6.2:19437192-19437211 | MS.gene55625:CDS | 50.0% |
| !!! | TAGGGCTAACCGTTTTGGCT+TGG | - | chr6.2:19437191-19437210 | MS.gene55625:CDS | 50.0% |
| !!! | GGGCTAACCGTTTTGGCTTG+GGG | - | chr6.2:19437193-19437212 | MS.gene55625:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 19435810 | 19437570 | 19435810 | ID=MS.gene55625 |
| chr6.2 | mRNA | 19435810 | 19437570 | 19435810 | ID=MS.gene55625.t1;Parent=MS.gene55625 |
| chr6.2 | exon | 19435810 | 19437570 | 19435810 | ID=MS.gene55625.t1.exon1;Parent=MS.gene55625.t1 |
| chr6.2 | CDS | 19435810 | 19437570 | 19435810 | ID=cds.MS.gene55625.t1;Parent=MS.gene55625.t1 |
| Gene Sequence |
| Protein sequence |
