Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56510.t1 | XP_013456774.1 | 98.9 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 2.40E-186 | 661.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56510.t1 | A0A072UY68 | 98.9 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 1.7e-186 | 661.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene56510 | 0.855073 | 8.06E-62 | -1.69E-46 |
| MS.gene049178 | MS.gene56510 | 0.802281 | 6.04E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene56510 | 0.844557 | 7.02E-59 | -1.69E-46 |
| MS.gene049368 | MS.gene56510 | 0.821922 | 3.12E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene56510 | 0.806734 | 7.12E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene56510 | 0.860455 | 2.04E-63 | -1.69E-46 |
| MS.gene049887 | MS.gene56510 | 0.841527 | 4.50E-58 | -1.69E-46 |
| MS.gene049983 | MS.gene56510 | 0.802045 | 6.76E-49 | -1.69E-46 |
| MS.gene050253 | MS.gene56510 | 0.803979 | 2.69E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene56510 | 0.800373 | 1.49E-48 | -1.69E-46 |
| MS.gene050551 | MS.gene56510 | 0.812758 | 3.61E-51 | -1.69E-46 |
| MS.gene050556 | MS.gene56510 | 0.800145 | 1.65E-48 | -1.69E-46 |
| MS.gene050838 | MS.gene56510 | 0.839599 | 1.44E-57 | -1.69E-46 |
| MS.gene050901 | MS.gene56510 | 0.800069 | 1.71E-48 | -1.69E-46 |
| MS.gene051003 | MS.gene56510 | 0.823458 | 1.37E-53 | -1.69E-46 |
| MS.gene051102 | MS.gene56510 | 0.818024 | 2.43E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene56510 | 0.832166 | 1.10E-55 | -1.69E-46 |
| MS.gene051676 | MS.gene56510 | 0.802818 | 4.68E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene56510 | 0.831318 | 1.79E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene56510 | 0.82927 | 5.65E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene56510 | 0.827713 | 1.34E-54 | -1.69E-46 |
| MS.gene051852 | MS.gene56510 | 0.81893 | 1.52E-52 | -1.69E-46 |
| MS.gene051902 | MS.gene56510 | 0.816029 | 6.82E-52 | -1.69E-46 |
| MS.gene052072 | MS.gene56510 | 0.807666 | 4.52E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene56510 | 0.857109 | 2.04E-62 | -1.69E-46 |
| MS.gene052335 | MS.gene56510 | 0.821816 | 3.30E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene56510 | 0.858691 | 6.93E-63 | -1.69E-46 |
| MS.gene052516 | MS.gene56510 | 0.835011 | 2.15E-56 | -1.69E-46 |
| MS.gene052609 | MS.gene56510 | 0.831213 | 1.90E-55 | -1.69E-46 |
| MS.gene052932 | MS.gene56510 | 0.806648 | 7.43E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene56510 | 0.827683 | 1.37E-54 | -1.69E-46 |
| MS.gene053143 | MS.gene56510 | 0.830527 | 2.79E-55 | -1.69E-46 |
| MS.gene053144 | MS.gene56510 | 0.83802 | 3.69E-57 | -1.69E-46 |
| MS.gene053581 | MS.gene56510 | 0.853299 | 2.62E-61 | -1.69E-46 |
| MS.gene053677 | MS.gene56510 | 0.805835 | 1.10E-49 | -1.69E-46 |
| MS.gene053678 | MS.gene56510 | 0.801877 | 7.32E-49 | -1.69E-46 |
| MS.gene053786 | MS.gene56510 | 0.811412 | 7.09E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene56510 | 0.814891 | 1.22E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene56510 | 0.809997 | 1.43E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene56510 | 0.810693 | 1.02E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene56510 | 0.83088 | 2.29E-55 | -1.69E-46 |
| MS.gene055314 | MS.gene56510 | 0.806185 | 9.30E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene56510 | 0.843017 | 1.81E-58 | -1.69E-46 |
| MS.gene055466 | MS.gene56510 | 0.821289 | 4.37E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene56510 | 0.838327 | 3.07E-57 | -1.69E-46 |
| MS.gene055469 | MS.gene56510 | 0.854945 | 8.78E-62 | -1.69E-46 |
| MS.gene055513 | MS.gene56510 | 0.876188 | 1.70E-68 | -1.69E-46 |
| MS.gene055580 | MS.gene56510 | -0.817497 | 3.20E-52 | -1.69E-46 |
| MS.gene05574 | MS.gene56510 | 0.811555 | 6.60E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene56510 | 0.809816 | 1.57E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene56510 | 0.809549 | 1.79E-50 | -1.69E-46 |
| MS.gene056005 | MS.gene56510 | 0.805839 | 1.10E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene56510 | -0.822747 | 2.01E-53 | -1.69E-46 |
| MS.gene056045 | MS.gene56510 | 0.818258 | 2.15E-52 | -1.69E-46 |
| MS.gene056082 | MS.gene56510 | 0.801708 | 7.93E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene56510 | 0.830924 | 2.23E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene56510 | 0.856081 | 4.10E-62 | -1.69E-46 |
| MS.gene056390 | MS.gene56510 | 0.854797 | 9.69E-62 | -1.69E-46 |
| MS.gene056522 | MS.gene56510 | -0.815081 | 1.11E-51 | -1.69E-46 |
| MS.gene056578 | MS.gene56510 | 0.804577 | 2.02E-49 | -1.69E-46 |
| MS.gene056677 | MS.gene56510 | 0.807662 | 4.53E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene56510 | 0.807676 | 4.50E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene56510 | 0.837253 | 5.80E-57 | -1.69E-46 |
| MS.gene057294 | MS.gene56510 | 0.808403 | 3.15E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene56510 | 0.815838 | 7.53E-52 | -1.69E-46 |
| MS.gene058492 | MS.gene56510 | 0.834343 | 3.17E-56 | -1.69E-46 |
| MS.gene058625 | MS.gene56510 | 0.809293 | 2.03E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene56510 | 0.810671 | 1.03E-50 | -1.69E-46 |
| MS.gene058639 | MS.gene56510 | 0.821674 | 3.56E-53 | -1.69E-46 |
| MS.gene058852 | MS.gene56510 | 0.844481 | 7.36E-59 | -1.69E-46 |
| MS.gene059170 | MS.gene56510 | 0.816105 | 6.57E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene56510 | 0.85261 | 4.12E-61 | -1.69E-46 |
| MS.gene059227 | MS.gene56510 | 0.818924 | 1.52E-52 | -1.69E-46 |
| MS.gene059570 | MS.gene56510 | 0.807788 | 4.26E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene56510 | 0.801854 | 7.40E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene56510 | 0.804934 | 1.70E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene56510 | 0.83065 | 2.61E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene56510 | 0.804138 | 2.49E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene56510 | 0.801671 | 8.07E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene56510 | 0.803557 | 3.29E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene56510 | 0.82213 | 2.79E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene56510 | 0.874519 | 6.34E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56510.t1 | MTR_4g082350 | 98.883 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 0.0 | 723 |
| MS.gene56510.t1 | MTR_4g109020 | 28.082 | 292 | 198 | 9 | 49 | 331 | 6 | 294 | 7.34e-29 | 114 |
| MS.gene56510.t1 | MTR_3g037110 | 27.703 | 296 | 186 | 8 | 49 | 330 | 6 | 287 | 6.45e-26 | 106 |
| MS.gene56510.t1 | MTR_4g096890 | 26.073 | 303 | 197 | 7 | 41 | 336 | 7 | 289 | 1.80e-17 | 82.4 |
| MS.gene56510.t1 | MTR_7g021620 | 26.316 | 304 | 199 | 7 | 39 | 336 | 5 | 289 | 8.51e-17 | 80.5 |
| MS.gene56510.t1 | MTR_3g088975 | 24.756 | 307 | 211 | 6 | 39 | 336 | 5 | 300 | 2.06e-15 | 76.6 |
| MS.gene56510.t1 | MTR_1g029440 | 23.127 | 307 | 225 | 6 | 35 | 336 | 1 | 301 | 1.05e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56510.t1 | AT1G69430 | 66.462 | 325 | 102 | 2 | 17 | 335 | 8 | 331 | 2.83e-154 | 437 |
| MS.gene56510.t1 | AT1G26650 | 63.939 | 330 | 116 | 3 | 24 | 350 | 2 | 331 | 8.05e-154 | 436 |
| MS.gene56510.t1 | AT4G19950 | 27.451 | 306 | 190 | 9 | 41 | 336 | 7 | 290 | 8.72e-15 | 74.7 |
| MS.gene56510.t1 | AT5G61340 | 28.311 | 219 | 136 | 8 | 119 | 329 | 80 | 285 | 1.57e-12 | 68.2 |
| MS.gene56510.t1 | AT5G61340 | 28.311 | 219 | 136 | 8 | 119 | 329 | 113 | 318 | 1.59e-12 | 68.6 |
Find 67 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGGTTCTGGAGGATGTTTC+GGG | 0.171105 | 4.2:+27373738 | MS.gene56510:CDS |
| CTCGGTTCTGGAGGATGTTT+CGG | 0.203669 | 4.2:+27373737 | MS.gene56510:CDS |
| GAGAAACTATAAGGATTCTT+AGG | 0.245365 | 4.2:+27373169 | MS.gene56510:CDS |
| TGTAGTGCATTGGCTGTTCT+TGG | 0.255096 | 4.2:+27373612 | MS.gene56510:CDS |
| TTGTGAAGAATCTTACTATT+AGG | 0.290531 | 4.2:+27373283 | MS.gene56510:CDS |
| GAGGTTGTTCTCCTAGGATT+AGG | 0.293873 | 4.2:+27373031 | MS.gene56510:CDS |
| TGCGTTGGTGATCTCGGTTC+TGG | 0.297916 | 4.2:+27373725 | MS.gene56510:CDS |
| TATTCGAGAAAGAAGTTTGA+TGG | 0.334246 | 4.2:+27373471 | MS.gene56510:CDS |
| TTTACGTCAAGCTTTAGAAT+TGG | 0.356836 | 4.2:+27373092 | MS.gene56510:CDS |
| ATATTCTTAGAGAAACTATA+AGG | 0.357854 | 4.2:+27373160 | MS.gene56510:CDS |
| GCCCATTGTTTCAGCAGAAA+TGG | 0.362209 | 4.2:-27374060 | None:intergenic |
| AATTCAATCAATGAATGCTT+TGG | 0.379030 | 4.2:+27373137 | MS.gene56510:CDS |
| TGTGCTATTGTCTAATGTAT+TGG | 0.379670 | 4.2:+27373248 | MS.gene56510:CDS |
| ATATATCTTGGATCAACAAT+AGG | 0.400163 | 4.2:+27373822 | MS.gene56510:CDS |
| TGTTGTGTATGCTGCATTGA+TGG | 0.401523 | 4.2:+27373650 | MS.gene56510:CDS |
| AGGTTGTTCTCCTAGGATTA+GGG | 0.404867 | 4.2:+27373032 | MS.gene56510:CDS |
| CAGCGTTGCGTTGGTGATCT+CGG | 0.412590 | 4.2:+27373719 | MS.gene56510:CDS |
| GTGTGATCGTGGCAAAGTTT+TGG | 0.412812 | 4.2:+27373505 | MS.gene56510:CDS |
| GTCGGTCTGCTAATATATCT+TGG | 0.415716 | 4.2:+27373810 | MS.gene56510:CDS |
| GCAGCATACACAACAACATT+AGG | 0.417117 | 4.2:-27373642 | None:intergenic |
| GGCCATTTCTGCTGAAACAA+TGG | 0.429412 | 4.2:+27374058 | MS.gene56510:CDS |
| GACAATAGCACAGCAGAAAC+AGG | 0.430186 | 4.2:-27373237 | None:intergenic |
| AACAATAGGAATGGCCTTTG+TGG | 0.433278 | 4.2:+27373836 | MS.gene56510:CDS |
| TGCGGATACGGTGATTGCTT+CGG | 0.443552 | 4.2:+27373374 | MS.gene56510:CDS |
| TGGGCTTGTACAGTTATTGT+TGG | 0.445242 | 4.2:+27373552 | MS.gene56510:CDS |
| ATTGTTGTTATTGTCGAAAA+CGG | 0.446504 | 4.2:+27373422 | MS.gene56510:CDS |
| CAAGTGGAGGTTGTTCTCCT+AGG | 0.449328 | 4.2:+27373025 | MS.gene56510:CDS |
| GTAGTGCATTGGCTGTTCTT+GGG | 0.473904 | 4.2:+27373613 | MS.gene56510:CDS |
| GCCATTTCTGCTGAAACAAT+GGG | 0.478130 | 4.2:+27374059 | MS.gene56510:CDS |
| AGATACTTGCGACGTATATG+TGG | 0.480298 | 4.2:+27373532 | MS.gene56510:CDS |
| TTGTCAGAGATTTGCGGATA+CGG | 0.482242 | 4.2:+27373362 | MS.gene56510:CDS |
| TGACAAGATTGCTTAATCAT+AGG | 0.488189 | 4.2:-27373345 | None:intergenic |
| AATCATTTGCAGCGTTGCGT+TGG | 0.493610 | 4.2:+27373710 | MS.gene56510:CDS |
| GGATTCTTAGGTTTAATGCA+TGG | 0.498954 | 4.2:+27373181 | MS.gene56510:CDS |
| TCTTACTATTAGGCTTATGT+TGG | 0.501948 | 4.2:+27373293 | MS.gene56510:CDS |
| TTTAGCATGGAGAACTCAAA+TGG | 0.507639 | 4.2:+27374008 | MS.gene56510:CDS |
| GCAATCTTGTCAGAGATTTG+CGG | 0.510716 | 4.2:+27373356 | MS.gene56510:CDS |
| ATATGATCTACCCTAATCCT+AGG | 0.527505 | 4.2:-27373042 | None:intergenic |
| AATGTGGGAAGGGCCGCTCT+TGG | 0.532814 | 4.2:+27373914 | MS.gene56510:CDS |
| GATTCTTAGGTTTAATGCAT+GGG | 0.536767 | 4.2:+27373182 | MS.gene56510:CDS |
| ATAGGAATGGCCTTTGTGGA+GGG | 0.546492 | 4.2:+27373840 | MS.gene56510:CDS |
| TGCTTAATCATAGGTCTCAA+AGG | 0.555452 | 4.2:-27373336 | None:intergenic |
| GTTATTGTCGAAAACGGCTG+TGG | 0.558964 | 4.2:+27373428 | MS.gene56510:CDS |
| GTGTATGCTGCATTGATGGT+CGG | 0.566529 | 4.2:+27373654 | MS.gene56510:CDS |
| GTGATGGATCTTCGAGAATG+TGG | 0.574992 | 4.2:+27373898 | MS.gene56510:CDS |
| AATAGGAATGGCCTTTGTGG+AGG | 0.586579 | 4.2:+27373839 | MS.gene56510:CDS |
| TCTTGGATCAACAATAGGAA+TGG | 0.587680 | 4.2:+27373827 | MS.gene56510:CDS |
| TTTAATCAAAGGTCAGACTC+AGG | 0.592291 | 4.2:+27373788 | MS.gene56510:CDS |
| AGAGTAAAGACACTGAGTTA+TGG | 0.598968 | 4.2:+27373876 | MS.gene56510:CDS |
| TAGGAATGGCCTTTGTGGAG+GGG | 0.600285 | 4.2:+27373841 | MS.gene56510:CDS |
| ATCAAAGGTCAGACTCAGGT+CGG | 0.608137 | 4.2:+27373792 | MS.gene56510:CDS |
| CGGTTCTGGAGGATGTTTCG+GGG | 0.610462 | 4.2:+27373739 | MS.gene56510:CDS |
| AAAATGGAGATTTCAAGTGG+AGG | 0.612604 | 4.2:+27373012 | None:intergenic |
| ATGGAGAACTCAAATGGCGA+TGG | 0.614239 | 4.2:+27374014 | MS.gene56510:CDS |
| ATGTTGGTTGCTGAAACTAG+TGG | 0.620640 | 4.2:+27373309 | MS.gene56510:CDS |
| TATAGATTCTATGATGAGTG+CGG | 0.621002 | 4.2:+27373962 | MS.gene56510:CDS |
| ATGCACTACAAAACGCAACA+AGG | 0.631744 | 4.2:-27373599 | None:intergenic |
| GATACTTGCGACGTATATGT+GGG | 0.634555 | 4.2:+27373533 | MS.gene56510:CDS |
| AACAACAATGTAGCATACAA+AGG | 0.636060 | 4.2:-27373408 | None:intergenic |
| GTTGGTGATCTCGGTTCTGG+AGG | 0.638193 | 4.2:+27373728 | MS.gene56510:CDS |
| AAGACACTGAGTTATGGTGA+TGG | 0.640856 | 4.2:+27373882 | MS.gene56510:CDS |
| GATCTTCGAGAATGTGGGAA+GGG | 0.641099 | 4.2:+27373904 | MS.gene56510:CDS |
| GGATCTTCGAGAATGTGGGA+AGG | 0.642671 | 4.2:+27373903 | MS.gene56510:CDS |
| CTCAAACAACCCCTCCACAA+AGG | 0.646189 | 4.2:-27373850 | None:intergenic |
| GAATACATTATCACCAAGAG+CGG | 0.651587 | 4.2:-27373927 | None:intergenic |
| GGTTCTGGAGGATGTTTCGG+GGG | 0.680880 | 4.2:+27373740 | MS.gene56510:CDS |
| TGATGGATCTTCGAGAATGT+GGG | 0.681312 | 4.2:+27373899 | MS.gene56510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTTAGAGAAACTATA+AGG | + | chr4.2:27373160-27373179 | MS.gene56510:CDS | 20.0% |
| ! | AATTCAATCAATGAATGCTT+TGG | + | chr4.2:27373137-27373156 | MS.gene56510:CDS | 25.0% |
| ! | ATATATCTTGGATCAACAAT+AGG | + | chr4.2:27373822-27373841 | MS.gene56510:CDS | 25.0% |
| ! | GTAGATCATATGAAAAAAGA+GGG | + | chr4.2:27373054-27373073 | MS.gene56510:CDS | 25.0% |
| ! | TTGTGAAGAATCTTACTATT+AGG | + | chr4.2:27373283-27373302 | MS.gene56510:CDS | 25.0% |
| !! | ATTGTTGTTATTGTCGAAAA+CGG | + | chr4.2:27373422-27373441 | MS.gene56510:CDS | 25.0% |
| !!! | CAACTCAATTTTAGAAACTA+TGG | + | chr4.2:27374037-27374056 | MS.gene56510:CDS | 25.0% |
| AACAACAATGTAGCATACAA+AGG | - | chr4.2:27373411-27373430 | None:intergenic | 30.0% | |
| GAGAAACTATAAGGATTCTT+AGG | + | chr4.2:27373169-27373188 | MS.gene56510:CDS | 30.0% | |
| GATTCTTAGGTTTAATGCAT+GGG | + | chr4.2:27373182-27373201 | MS.gene56510:CDS | 30.0% | |
| GGTAGATCATATGAAAAAAG+AGG | + | chr4.2:27373053-27373072 | MS.gene56510:CDS | 30.0% | |
| TATAGATTCTATGATGAGTG+CGG | + | chr4.2:27373962-27373981 | MS.gene56510:CDS | 30.0% | |
| TATTCGAGAAAGAAGTTTGA+TGG | + | chr4.2:27373471-27373490 | MS.gene56510:CDS | 30.0% | |
| TCTTACTATTAGGCTTATGT+TGG | + | chr4.2:27373293-27373312 | MS.gene56510:CDS | 30.0% | |
| TGACAAGATTGCTTAATCAT+AGG | - | chr4.2:27373348-27373367 | None:intergenic | 30.0% | |
| ! | TGTGCTATTGTCTAATGTAT+TGG | + | chr4.2:27373248-27373267 | MS.gene56510:CDS | 30.0% |
| !! | GGTGATAATGTATTCTTTTG+TGG | + | chr4.2:27373935-27373954 | MS.gene56510:CDS | 30.0% |
| !! | TTTACGTCAAGCTTTAGAAT+TGG | + | chr4.2:27373092-27373111 | MS.gene56510:CDS | 30.0% |
| !!! | AGGTCGAGTATTTTAATCAA+AGG | + | chr4.2:27373777-27373796 | MS.gene56510:CDS | 30.0% |
| AGAGTAAAGACACTGAGTTA+TGG | + | chr4.2:27373876-27373895 | MS.gene56510:CDS | 35.0% | |
| ATATGATCTACCCTAATCCT+AGG | - | chr4.2:27373045-27373064 | None:intergenic | 35.0% | |
| GAATACATTATCACCAAGAG+CGG | - | chr4.2:27373930-27373949 | None:intergenic | 35.0% | |
| GGATTCTTAGGTTTAATGCA+TGG | + | chr4.2:27373181-27373200 | MS.gene56510:CDS | 35.0% | |
| TCTTGGATCAACAATAGGAA+TGG | + | chr4.2:27373827-27373846 | MS.gene56510:CDS | 35.0% | |
| TGCTTAATCATAGGTCTCAA+AGG | - | chr4.2:27373339-27373358 | None:intergenic | 35.0% | |
| TTTAATCAAAGGTCAGACTC+AGG | + | chr4.2:27373788-27373807 | MS.gene56510:CDS | 35.0% | |
| TTTAGCATGGAGAACTCAAA+TGG | + | chr4.2:27374008-27374027 | MS.gene56510:CDS | 35.0% | |
| ! | CAGTTGTAGATCTTTTAGCA+TGG | + | chr4.2:27373995-27374014 | MS.gene56510:CDS | 35.0% |
| AACAATAGGAATGGCCTTTG+TGG | + | chr4.2:27373836-27373855 | MS.gene56510:CDS | 40.0% | |
| AAGACACTGAGTTATGGTGA+TGG | + | chr4.2:27373882-27373901 | MS.gene56510:CDS | 40.0% | |
| AGATACTTGCGACGTATATG+TGG | + | chr4.2:27373532-27373551 | MS.gene56510:CDS | 40.0% | |
| AGGTTGTTCTCCTAGGATTA+GGG | + | chr4.2:27373032-27373051 | MS.gene56510:CDS | 40.0% | |
| ATGCACTACAAAACGCAACA+AGG | - | chr4.2:27373602-27373621 | None:intergenic | 40.0% | |
| GATACTTGCGACGTATATGT+GGG | + | chr4.2:27373533-27373552 | MS.gene56510:CDS | 40.0% | |
| GCAATCTTGTCAGAGATTTG+CGG | + | chr4.2:27373356-27373375 | MS.gene56510:CDS | 40.0% | |
| GCAGCATACACAACAACATT+AGG | - | chr4.2:27373645-27373664 | None:intergenic | 40.0% | |
| GCCATTTCTGCTGAAACAAT+GGG | + | chr4.2:27374059-27374078 | MS.gene56510:CDS | 40.0% | |
| GTCGGTCTGCTAATATATCT+TGG | + | chr4.2:27373810-27373829 | MS.gene56510:CDS | 40.0% | |
| TGGGCTTGTACAGTTATTGT+TGG | + | chr4.2:27373552-27373571 | MS.gene56510:CDS | 40.0% | |
| TGTTGTGTATGCTGCATTGA+TGG | + | chr4.2:27373650-27373669 | MS.gene56510:CDS | 40.0% | |
| TTGTCAGAGATTTGCGGATA+CGG | + | chr4.2:27373362-27373381 | MS.gene56510:CDS | 40.0% | |
| ! | ATGTTGGTTGCTGAAACTAG+TGG | + | chr4.2:27373309-27373328 | MS.gene56510:CDS | 40.0% |
| ! | TGATGGATCTTCGAGAATGT+GGG | + | chr4.2:27373899-27373918 | MS.gene56510:CDS | 40.0% |
| ! | TGTTGCGTTTTGTAGTGCAT+TGG | + | chr4.2:27373602-27373621 | MS.gene56510:CDS | 40.0% |
| !! | TTCGAAGTTTTGTGTGATCG+TGG | + | chr4.2:27373494-27373513 | MS.gene56510:CDS | 40.0% |
| AATAGGAATGGCCTTTGTGG+AGG | + | chr4.2:27373839-27373858 | MS.gene56510:CDS | 45.0% | |
| AATCATTTGCAGCGTTGCGT+TGG | + | chr4.2:27373710-27373729 | MS.gene56510:CDS | 45.0% | |
| ATAGGAATGGCCTTTGTGGA+GGG | + | chr4.2:27373840-27373859 | MS.gene56510:CDS | 45.0% | |
| ATCAAAGGTCAGACTCAGGT+CGG | + | chr4.2:27373792-27373811 | MS.gene56510:CDS | 45.0% | |
| ATGGAGAACTCAAATGGCGA+TGG | + | chr4.2:27374014-27374033 | MS.gene56510:CDS | 45.0% | |
| GACAATAGCACAGCAGAAAC+AGG | - | chr4.2:27373240-27373259 | None:intergenic | 45.0% | |
| GAGGTTGTTCTCCTAGGATT+AGG | + | chr4.2:27373031-27373050 | MS.gene56510:CDS | 45.0% | |
| GATCTTCGAGAATGTGGGAA+GGG | + | chr4.2:27373904-27373923 | MS.gene56510:CDS | 45.0% | |
| GCCCATTGTTTCAGCAGAAA+TGG | - | chr4.2:27374063-27374082 | None:intergenic | 45.0% | |
| GGCCATTTCTGCTGAAACAA+TGG | + | chr4.2:27374058-27374077 | MS.gene56510:CDS | 45.0% | |
| GTTATTGTCGAAAACGGCTG+TGG | + | chr4.2:27373428-27373447 | MS.gene56510:CDS | 45.0% | |
| ! | GTGTATGCTGCATTGATGGT+CGG | + | chr4.2:27373654-27373673 | MS.gene56510:CDS | 45.0% |
| ! | GTGTGATCGTGGCAAAGTTT+TGG | + | chr4.2:27373505-27373524 | MS.gene56510:CDS | 45.0% |
| !! | GTAGTGCATTGGCTGTTCTT+GGG | + | chr4.2:27373613-27373632 | MS.gene56510:CDS | 45.0% |
| !! | GTGATGGATCTTCGAGAATG+TGG | + | chr4.2:27373898-27373917 | MS.gene56510:CDS | 45.0% |
| !! | TGATCGTGGCAAAGTTTTGG+AGG | + | chr4.2:27373508-27373527 | MS.gene56510:CDS | 45.0% |
| !! | TGTAGTGCATTGGCTGTTCT+TGG | + | chr4.2:27373612-27373631 | MS.gene56510:CDS | 45.0% |
| CAAGTGGAGGTTGTTCTCCT+AGG | + | chr4.2:27373025-27373044 | MS.gene56510:CDS | 50.0% | |
| CTCAAACAACCCCTCCACAA+AGG | - | chr4.2:27373853-27373872 | None:intergenic | 50.0% | |
| GGATCTTCGAGAATGTGGGA+AGG | + | chr4.2:27373903-27373922 | MS.gene56510:CDS | 50.0% | |
| TAGGAATGGCCTTTGTGGAG+GGG | + | chr4.2:27373841-27373860 | MS.gene56510:CDS | 50.0% | |
| TGCGGATACGGTGATTGCTT+CGG | + | chr4.2:27373374-27373393 | MS.gene56510:CDS | 50.0% | |
| !! | CTCGGTTCTGGAGGATGTTT+CGG | + | chr4.2:27373737-27373756 | MS.gene56510:CDS | 50.0% |
| !! | TCGGTTCTGGAGGATGTTTC+GGG | + | chr4.2:27373738-27373757 | MS.gene56510:CDS | 50.0% |
| !! | CAGCGTTGCGTTGGTGATCT+CGG | + | chr4.2:27373719-27373738 | MS.gene56510:CDS | 55.0% |
| !! | CGGTTCTGGAGGATGTTTCG+GGG | + | chr4.2:27373739-27373758 | MS.gene56510:CDS | 55.0% |
| !! | GGTTCTGGAGGATGTTTCGG+GGG | + | chr4.2:27373740-27373759 | MS.gene56510:CDS | 55.0% |
| !! | GTTGGTGATCTCGGTTCTGG+AGG | + | chr4.2:27373728-27373747 | MS.gene56510:CDS | 55.0% |
| !! | TGCGTTGGTGATCTCGGTTC+TGG | + | chr4.2:27373725-27373744 | MS.gene56510:CDS | 55.0% |
| AATGTGGGAAGGGCCGCTCT+TGG | + | chr4.2:27373914-27373933 | MS.gene56510:CDS | 60.0% | |
| ! | GGAGGATGTTTCGGGGGCGC+AGG | + | chr4.2:27373746-27373765 | MS.gene56510:CDS | 70.0% |
| ! | CGGGGGCGCAGGCGATGCTA+AGG | + | chr4.2:27373757-27373776 | MS.gene56510:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 27373015 | 27374091 | 27373015 | ID=MS.gene56510 |
| chr4.2 | mRNA | 27373015 | 27374091 | 27373015 | ID=MS.gene56510.t1;Parent=MS.gene56510 |
| chr4.2 | exon | 27373015 | 27374091 | 27373015 | ID=MS.gene56510.t1.exon1;Parent=MS.gene56510.t1 |
| chr4.2 | CDS | 27373015 | 27374091 | 27373015 | ID=cds.MS.gene56510.t1;Parent=MS.gene56510.t1 |
| Gene Sequence |
| Protein sequence |
