AlfalfaGEDB | MS.gene56510

M. sativa cultivar XinJiangDaYe / MS.gene56510

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56510.t1	XP_013456774.1	98.9	358	4	0	1	358	1	358	2.40E-186	661.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56510.t1	A0A072UY68	98.9	358	4	0	1	358	1	358	1.7e-186	661.4

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene56510	0.855073	8.06E-62	-1.69E-46
MS.gene049178	MS.gene56510	0.802281	6.04E-49	-1.69E-46
MS.gene049350	MS.gene56510	0.844557	7.02E-59	-1.69E-46
MS.gene049368	MS.gene56510	0.821922	3.12E-53	-1.69E-46
MS.gene049711	MS.gene56510	0.806734	7.12E-50	-1.69E-46
MS.gene049807	MS.gene56510	0.860455	2.04E-63	-1.69E-46
MS.gene049887	MS.gene56510	0.841527	4.50E-58	-1.69E-46
MS.gene049983	MS.gene56510	0.802045	6.76E-49	-1.69E-46
MS.gene050253	MS.gene56510	0.803979	2.69E-49	-1.69E-46
MS.gene050414	MS.gene56510	0.800373	1.49E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56510.t1	MTR_4g082350	98.883	358	4	0	1	358	1	358	0.0	723
MS.gene56510.t1	MTR_4g109020	28.082	292	198	9	49	331	6	294	7.34e-29	114
MS.gene56510.t1	MTR_3g037110	27.703	296	186	8	49	330	6	287	6.45e-26	106
MS.gene56510.t1	MTR_4g096890	26.073	303	197	7	41	336	7	289	1.80e-17	82.4
MS.gene56510.t1	MTR_7g021620	26.316	304	199	7	39	336	5	289	8.51e-17	80.5
MS.gene56510.t1	MTR_3g088975	24.756	307	211	6	39	336	5	300	2.06e-15	76.6
MS.gene56510.t1	MTR_1g029440	23.127	307	225	6	35	336	1	301	1.05e-11	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56510.t1	AT1G69430	66.462	325	102	2	17	335	8	331	2.83e-154	437
MS.gene56510.t1	AT1G26650	63.939	330	116	3	24	350	2	331	8.05e-154	436
MS.gene56510.t1	AT4G19950	27.451	306	190	9	41	336	7	290	8.72e-15	74.7
MS.gene56510.t1	AT5G61340	28.311	219	136	8	119	329	80	285	1.57e-12	68.2
MS.gene56510.t1	AT5G61340	28.311	219	136	8	119	329	113	318	1.59e-12	68.6

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Find 67 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAGATTTCAAGTGG+AGG	0.612604	4.2:+27373012	None:intergenic
AACAACAATGTAGCATACAA+AGG	0.636060	4.2:-27373408	None:intergenic
AACAATAGGAATGGCCTTTG+TGG	0.433278	4.2:+27373836	MS.gene56510:CDS
AAGACACTGAGTTATGGTGA+TGG	0.640856	4.2:+27373882	MS.gene56510:CDS
AATAGGAATGGCCTTTGTGG+AGG	0.586579	4.2:+27373839	MS.gene56510:CDS
AATCATTTGCAGCGTTGCGT+TGG	0.493610	4.2:+27373710	MS.gene56510:CDS
AATGTGGGAAGGGCCGCTCT+TGG	0.532814	4.2:+27373914	MS.gene56510:CDS
AATTCAATCAATGAATGCTT+TGG	0.379030	4.2:+27373137	MS.gene56510:CDS
AGAGTAAAGACACTGAGTTA+TGG	0.598968	4.2:+27373876	MS.gene56510:CDS
AGATACTTGCGACGTATATG+TGG	0.480298	4.2:+27373532	MS.gene56510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACAATGTAGCATACAA+AGG	-	chr4.2:27373411-27373430	None:intergenic	30.0%
GAGAAACTATAAGGATTCTT+AGG	+	chr4.2:27373169-27373188	MS.gene56510:CDS	30.0%
GATTCTTAGGTTTAATGCAT+GGG	+	chr4.2:27373182-27373201	MS.gene56510:CDS	30.0%
GGTAGATCATATGAAAAAAG+AGG	+	chr4.2:27373053-27373072	MS.gene56510:CDS	30.0%
TATAGATTCTATGATGAGTG+CGG	+	chr4.2:27373962-27373981	MS.gene56510:CDS	30.0%
TATTCGAGAAAGAAGTTTGA+TGG	+	chr4.2:27373471-27373490	MS.gene56510:CDS	30.0%
TCTTACTATTAGGCTTATGT+TGG	+	chr4.2:27373293-27373312	MS.gene56510:CDS	30.0%
TGACAAGATTGCTTAATCAT+AGG	-	chr4.2:27373348-27373367	None:intergenic	30.0%
AGAGTAAAGACACTGAGTTA+TGG	+	chr4.2:27373876-27373895	MS.gene56510:CDS	35.0%
ATATGATCTACCCTAATCCT+AGG	-	chr4.2:27373045-27373064	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	27373015	27374091	27373015	ID=MS.gene56510
chr4.2	mRNA	27373015	27374091	27373015	ID=MS.gene56510.t1;Parent=MS.gene56510
chr4.2	exon	27373015	27374091	27373015	ID=MS.gene56510.t1.exon1;Parent=MS.gene56510.t1
chr4.2	CDS	27373015	27374091	27373015	ID=cds.MS.gene56510.t1;Parent=MS.gene56510.t1

Gene Sequence

>MS.gene56510

ATGGAGATTTCAAGTGGAGGTTGTTCTCCTAGGATTAGGGTAGATCATATGAAAAAAGAGGGATCAGATGATACACGTTTACGTCAAGCTTTAGAATTGGAACTTTCTGATCATAATCATGAAATTCAATCAATGAATGCTTTGGATATTCTTAGAGAAACTATAAGGATTCTTAGGTTTAATGCATGGGCTTTTATGATAATCGCTTTTTTGCTTATTTGTCCTGTTTCTGCTGTGCTATTGTCTAATGTATTGGTTGATGAATCTATTGTGAAGAATCTTACTATTAGGCTTATGTTGGTTGCTGAAACTAGTGGTCTTCCTTTGAGACCTATGATTAAGCAATCTTGTCAGAGATTTGCGGATACGGTGATTGCTTCGGCGATGTGTTTTCCTTTGTATGCTACATTGTTGTTATTGTCGAAAACGGCTGTGGTTTATTCTGTTGATTGTACTTATTCGAGAAAGAAGTTTGATGGTTCGAAGTTTTGTGTGATCGTGGCAAAGTTTTGGAGGAAGATACTTGCGACGTATATGTGGGCTTGTACAGTTATTGTTGGTTGCATCACTATGTTTTGTGTTTTCCTTGTTGCGTTTTGTAGTGCATTGGCTGTTCTTGGGTTTTCTCCTAATGTTGTTGTGTATGCTGCATTGATGGTCGGATTAGTTTTCTCTGTTGTATTTGCGAATGCGATAATCATTTGCAGCGTTGCGTTGGTGATCTCGGTTCTGGAGGATGTTTCGGGGGCGCAGGCGATGCTAAGGTCGAGTATTTTAATCAAAGGTCAGACTCAGGTCGGTCTGCTAATATATCTTGGATCAACAATAGGAATGGCCTTTGTGGAGGGGTTGTTTGAGCACAGAGTAAAGACACTGAGTTATGGTGATGGATCTTCGAGAATGTGGGAAGGGCCGCTCTTGGTGATAATGTATTCTTTTGTGGTGCTTATAGATTCTATGATGAGTGCGGTTTTCTATTTCAGTTGTAGATCTTTTAGCATGGAGAACTCAAATGGCGATGGCAACTCAATTTTAGAAACTATGGCCATTTCTGCTGAAACAATGGGCATTCAATGA

Protein sequence

>MS.gene56510.t1

MEISSGGCSPRIRVDHMKKEGSDDTRLRQALELELSDHNHEIQSMNALDILRETIRILRFNAWAFMIIAFLLICPVSAVLLSNVLVDESIVKNLTIRLMLVAETSGLPLRPMIKQSCQRFADTVIASAMCFPLYATLLLLSKTAVVYSVDCTYSRKKFDGSKFCVIVAKFWRKILATYMWACTVIVGCITMFCVFLVAFCSALAVLGFSPNVVVYAALMVGLVFSVVFANAIIICSVALVISVLEDVSGAQAMLRSSILIKGQTQVGLLIYLGSTIGMAFVEGLFEHRVKTLSYGDGSSRMWEGPLLVIMYSFVVLIDSMMSAVFYFSCRSFSMENSNGDGNSILETMAISAETMGIQ