Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59838.t1 | XP_003628184.1 | 95.5 | 157 | 7 | 0 | 1 | 157 | 1 | 157 | 4.20E-82 | 313.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59838.t1 | Q9SSK9 | 32.2 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 1.4e-17 | 90.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59838.t1 | B7FMF6 | 95.5 | 157 | 7 | 0 | 1 | 157 | 1 | 157 | 3.0e-82 | 313.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene59838 | 0.809323 | 2.00E-50 | -1.69E-46 |
| MS.gene049341 | MS.gene59838 | 0.807516 | 4.87E-50 | -1.69E-46 |
| MS.gene049382 | MS.gene59838 | 0.817074 | 3.98E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene59838 | 0.804673 | 1.93E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene59838 | 0.810691 | 1.02E-50 | -1.69E-46 |
| MS.gene049979 | MS.gene59838 | 0.801748 | 7.78E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene59838 | 0.829091 | 6.25E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene59838 | 0.802939 | 4.42E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene59838 | 0.801568 | 8.47E-49 | -1.69E-46 |
| MS.gene050438 | MS.gene59838 | 0.814353 | 1.61E-51 | -1.69E-46 |
| MS.gene050780 | MS.gene59838 | 0.802431 | 5.63E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene59838 | 0.872568 | 2.88E-67 | -1.69E-46 |
| MS.gene050808 | MS.gene59838 | 0.850843 | 1.31E-60 | -1.69E-46 |
| MS.gene050815 | MS.gene59838 | 0.812051 | 5.15E-51 | -1.69E-46 |
| MS.gene050826 | MS.gene59838 | 0.804902 | 1.73E-49 | -1.69E-46 |
| MS.gene051180 | MS.gene59838 | 0.820015 | 8.57E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene59838 | 0.843921 | 1.04E-58 | -1.69E-46 |
| MS.gene051265 | MS.gene59838 | 0.811479 | 6.86E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene59838 | 0.805233 | 1.47E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene59838 | 0.808938 | 2.42E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene59838 | 0.816466 | 5.45E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene59838 | 0.856835 | 2.46E-62 | -1.69E-46 |
| MS.gene051720 | MS.gene59838 | 0.847037 | 1.49E-59 | -1.69E-46 |
| MS.gene052020 | MS.gene59838 | 0.834709 | 2.56E-56 | -1.69E-46 |
| MS.gene052133 | MS.gene59838 | 0.804777 | 1.84E-49 | -1.69E-46 |
| MS.gene052323 | MS.gene59838 | 0.823516 | 1.33E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene59838 | 0.814541 | 1.46E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene59838 | 0.802016 | 6.85E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene59838 | 0.819492 | 1.13E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene59838 | 0.864978 | 8.24E-65 | -1.69E-46 |
| MS.gene052863 | MS.gene59838 | 0.829747 | 4.33E-55 | -1.69E-46 |
| MS.gene052896 | MS.gene59838 | 0.825319 | 5.00E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene59838 | 0.800882 | 1.17E-48 | -1.69E-46 |
| MS.gene053074 | MS.gene59838 | 0.800537 | 1.38E-48 | -1.69E-46 |
| MS.gene053166 | MS.gene59838 | 0.804866 | 1.76E-49 | -1.69E-46 |
| MS.gene053221 | MS.gene59838 | 0.834361 | 3.13E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene59838 | 0.807975 | 3.89E-50 | -1.69E-46 |
| MS.gene053563 | MS.gene59838 | 0.806 | 1.02E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene59838 | 0.803886 | 2.81E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene59838 | 0.802615 | 5.16E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene59838 | 0.818584 | 1.82E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene59838 | 0.803929 | 2.76E-49 | -1.69E-46 |
| MS.gene05462 | MS.gene59838 | 0.803678 | 3.11E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene59838 | 0.807338 | 5.31E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene59838 | 0.835369 | 1.75E-56 | -1.69E-46 |
| MS.gene055357 | MS.gene59838 | 0.816253 | 6.08E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene59838 | 0.818712 | 1.70E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene59838 | 0.818257 | 2.15E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene59838 | 0.83136 | 1.74E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene59838 | 0.821967 | 3.05E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene59838 | 0.818012 | 2.45E-52 | -1.69E-46 |
| MS.gene055608 | MS.gene59838 | 0.813876 | 2.05E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene59838 | 0.80186 | 7.38E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene59838 | 0.818576 | 1.82E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene59838 | 0.827594 | 1.43E-54 | -1.69E-46 |
| MS.gene056069 | MS.gene59838 | -0.83006 | 3.63E-55 | -1.69E-46 |
| MS.gene056173 | MS.gene59838 | 0.841687 | 4.09E-58 | -1.69E-46 |
| MS.gene056553 | MS.gene59838 | 0.819834 | 9.43E-53 | -1.69E-46 |
| MS.gene056643 | MS.gene59838 | 0.806512 | 7.94E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene59838 | 0.821285 | 4.38E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene59838 | 0.831887 | 1.29E-55 | -1.69E-46 |
| MS.gene057414 | MS.gene59838 | 0.801826 | 7.50E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene59838 | 0.823657 | 1.23E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene59838 | 0.817301 | 3.54E-52 | -1.69E-46 |
| MS.gene058636 | MS.gene59838 | 0.83235 | 9.94E-56 | -1.69E-46 |
| MS.gene059128 | MS.gene59838 | 0.817997 | 2.47E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene59838 | 0.805573 | 1.25E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene59838 | 0.808459 | 3.06E-50 | -1.69E-46 |
| MS.gene059863 | MS.gene59838 | 0.805402 | 1.36E-49 | -1.69E-46 |
| MS.gene059937 | MS.gene59838 | 0.813845 | 2.08E-51 | -1.69E-46 |
| MS.gene060137 | MS.gene59838 | -0.81292 | 3.33E-51 | -1.69E-46 |
| MS.gene060310 | MS.gene59838 | 0.804017 | 2.64E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene59838 | 0.817219 | 3.69E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene59838 | 0.836585 | 8.58E-57 | -1.69E-46 |
| MS.gene060619 | MS.gene59838 | 0.821295 | 4.36E-53 | -1.69E-46 |
| MS.gene060637 | MS.gene59838 | 0.806482 | 8.05E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene59838 | 0.823085 | 1.68E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59838.t1 | MTR_8g045300 | 95.541 | 157 | 7 | 0 | 1 | 157 | 1 | 157 | 2.23e-110 | 310 |
| MS.gene59838.t1 | MTR_8g045520 | 73.718 | 156 | 41 | 0 | 1 | 156 | 1 | 156 | 1.06e-84 | 245 |
| MS.gene59838.t1 | MTR_8g045490 | 68.590 | 156 | 48 | 1 | 1 | 156 | 1 | 155 | 2.97e-81 | 237 |
| MS.gene59838.t1 | MTR_8g045570 | 70.199 | 151 | 45 | 0 | 1 | 151 | 1 | 151 | 1.19e-80 | 235 |
| MS.gene59838.t1 | MTR_8g045400 | 67.308 | 156 | 50 | 1 | 1 | 156 | 1 | 155 | 1.08e-77 | 228 |
| MS.gene59838.t1 | MTR_8g045555 | 68.212 | 151 | 48 | 0 | 1 | 151 | 1 | 151 | 2.54e-77 | 227 |
| MS.gene59838.t1 | MTR_8g045695 | 65.385 | 156 | 53 | 1 | 1 | 156 | 1 | 155 | 2.74e-76 | 224 |
| MS.gene59838.t1 | MTR_8g045735 | 65.806 | 155 | 52 | 1 | 1 | 155 | 1 | 154 | 2.76e-74 | 219 |
| MS.gene59838.t1 | MTR_8g045640 | 62.821 | 156 | 57 | 1 | 1 | 156 | 1 | 155 | 1.64e-70 | 209 |
| MS.gene59838.t1 | MTR_8g045560 | 62.179 | 156 | 58 | 1 | 1 | 156 | 1 | 155 | 1.99e-69 | 207 |
| MS.gene59838.t1 | MTR_8g045665 | 61.538 | 156 | 59 | 1 | 1 | 156 | 1 | 155 | 2.85e-69 | 206 |
| MS.gene59838.t1 | MTR_1g030810 | 42.208 | 154 | 86 | 2 | 1 | 152 | 1 | 153 | 1.27e-38 | 129 |
| MS.gene59838.t1 | MTR_1g030820 | 39.610 | 154 | 90 | 2 | 1 | 152 | 1 | 153 | 4.29e-37 | 125 |
| MS.gene59838.t1 | MTR_8g012550 | 33.333 | 150 | 97 | 3 | 6 | 154 | 8 | 155 | 1.56e-26 | 98.2 |
| MS.gene59838.t1 | MTR_1g030840 | 32.692 | 156 | 97 | 4 | 1 | 149 | 1 | 155 | 4.65e-22 | 87.0 |
| MS.gene59838.t1 | MTR_1g031640 | 34.694 | 147 | 87 | 5 | 7 | 151 | 7 | 146 | 5.93e-21 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59838.t1 | AT5G28010 | 32.895 | 152 | 99 | 3 | 3 | 152 | 15 | 165 | 7.00e-23 | 89.4 |
| MS.gene59838.t1 | AT5G28010 | 32.895 | 152 | 99 | 3 | 3 | 152 | 15 | 165 | 7.00e-23 | 89.4 |
| MS.gene59838.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 1.23e-22 | 88.6 |
| MS.gene59838.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 2.86e-22 | 88.6 |
| MS.gene59838.t1 | AT1G70840 | 32.237 | 152 | 100 | 3 | 3 | 152 | 20 | 170 | 6.06e-22 | 87.0 |
| MS.gene59838.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 7.12e-22 | 88.6 |
| MS.gene59838.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 22 | 172 | 2.07e-21 | 88.6 |
| MS.gene59838.t1 | AT1G70830 | 30.921 | 152 | 102 | 3 | 3 | 152 | 184 | 334 | 6.94e-20 | 84.7 |
| MS.gene59838.t1 | AT1G70890 | 30.921 | 152 | 102 | 3 | 3 | 152 | 7 | 157 | 2.61e-21 | 84.7 |
| MS.gene59838.t1 | AT1G70830 | 30.921 | 152 | 102 | 3 | 3 | 152 | 137 | 287 | 3.09e-20 | 84.7 |
| MS.gene59838.t1 | AT1G70850 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 7.53e-20 | 82.8 |
| MS.gene59838.t1 | AT1G70850 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 1.76e-19 | 83.2 |
| MS.gene59838.t1 | AT1G70850 | 32.394 | 142 | 93 | 3 | 13 | 152 | 175 | 315 | 1.07e-18 | 81.3 |
| MS.gene59838.t1 | AT1G70850 | 30.667 | 150 | 101 | 3 | 3 | 150 | 9 | 157 | 1.76e-19 | 83.2 |
| MS.gene59838.t1 | AT1G70850 | 32.394 | 142 | 93 | 3 | 13 | 152 | 175 | 315 | 1.07e-18 | 81.3 |
| MS.gene59838.t1 | AT1G23120 | 28.105 | 153 | 105 | 3 | 1 | 153 | 1 | 148 | 9.03e-19 | 78.2 |
| MS.gene59838.t1 | AT1G23120 | 28.571 | 154 | 103 | 4 | 2 | 153 | 50 | 198 | 4.43e-18 | 77.4 |
| MS.gene59838.t1 | AT1G23130 | 27.815 | 151 | 107 | 2 | 3 | 152 | 10 | 159 | 8.49e-18 | 75.9 |
| MS.gene59838.t1 | AT1G70870 | 32.450 | 151 | 89 | 4 | 1 | 151 | 1 | 138 | 3.98e-17 | 73.6 |
| MS.gene59838.t1 | AT4G23670 | 30.921 | 152 | 102 | 3 | 1 | 151 | 1 | 150 | 6.04e-17 | 73.6 |
| MS.gene59838.t1 | AT5G28000 | 28.947 | 152 | 105 | 3 | 3 | 152 | 13 | 163 | 7.46e-17 | 73.6 |
| MS.gene59838.t1 | AT1G70880 | 26.974 | 152 | 108 | 3 | 3 | 152 | 8 | 158 | 1.13e-16 | 72.8 |
| MS.gene59838.t1 | AT1G24020 | 29.870 | 154 | 104 | 3 | 1 | 152 | 1 | 152 | 1.27e-15 | 70.1 |
| MS.gene59838.t1 | AT1G24020 | 29.870 | 154 | 104 | 3 | 1 | 152 | 1 | 152 | 1.27e-15 | 70.1 |
| MS.gene59838.t1 | AT2G01520 | 27.632 | 152 | 107 | 3 | 1 | 151 | 1 | 150 | 2.87e-15 | 68.9 |
| MS.gene59838.t1 | AT1G14930 | 27.389 | 157 | 111 | 3 | 1 | 156 | 1 | 155 | 1.18e-14 | 67.4 |
| MS.gene59838.t1 | AT2G01530 | 28.947 | 152 | 105 | 3 | 1 | 151 | 1 | 150 | 3.28e-14 | 66.2 |
| MS.gene59838.t1 | AT1G35310 | 28.169 | 142 | 99 | 3 | 13 | 153 | 12 | 151 | 1.07e-13 | 65.1 |
| MS.gene59838.t1 | AT1G35260 | 27.815 | 151 | 99 | 4 | 7 | 152 | 6 | 151 | 1.29e-13 | 64.7 |
| MS.gene59838.t1 | AT4G14060 | 27.632 | 152 | 107 | 3 | 1 | 151 | 1 | 150 | 2.62e-13 | 63.9 |
| MS.gene59838.t1 | AT1G14940 | 27.152 | 151 | 107 | 3 | 1 | 150 | 1 | 149 | 1.66e-12 | 62.0 |
| MS.gene59838.t1 | AT1G30990 | 28.571 | 154 | 100 | 5 | 1 | 150 | 1 | 148 | 1.98e-12 | 61.6 |
| MS.gene59838.t1 | AT4G23680 | 25.000 | 152 | 111 | 3 | 1 | 151 | 1 | 150 | 2.25e-12 | 61.6 |
| MS.gene59838.t1 | AT1G14950 | 24.841 | 157 | 115 | 3 | 1 | 156 | 1 | 155 | 1.79e-11 | 59.3 |
Find 21 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAAACTTAGCACTGAAAT+TGG | 0.239596 | 8.3:+54169528 | MS.gene59838:CDS |
| AGGTATTCCATCCAACTATT+TGG | 0.260874 | 8.3:-54170926 | None:intergenic |
| ATGGCTCTACTGTAGTTAAA+TGG | 0.325362 | 8.3:+54170864 | MS.gene59838:CDS |
| TTCATCACCTTGATGCAGCT+TGG | 0.437287 | 8.3:-54169637 | None:intergenic |
| GTAAACTTAGCACTGAAATT+GGG | 0.446714 | 8.3:+54169529 | MS.gene59838:CDS |
| AGAAATTGATGAGCACTATA+AGG | 0.468901 | 8.3:+54170805 | MS.gene59838:CDS |
| AGAATCGTCCACAAGATCTT+CGG | 0.493976 | 8.3:+54170779 | MS.gene59838:CDS |
| TATTCCATCCAACTATTTGG+AGG | 0.505271 | 8.3:-54170923 | None:intergenic |
| AGCTGCATCAAGGTGATGAA+TGG | 0.510022 | 8.3:+54169640 | MS.gene59838:CDS |
| TTTCTTCACCGAAGATCTTG+TGG | 0.512241 | 8.3:-54170787 | None:intergenic |
| CATCATTGAAGTGATTGATA+AGG | 0.521648 | 8.3:+54170838 | MS.gene59838:CDS |
| ATGTTGAACCTCCAAATAGT+TGG | 0.544310 | 8.3:+54170915 | MS.gene59838:CDS |
| CGATTTCACAACAGAGGGCA+AGG | 0.552186 | 8.3:+54170709 | MS.gene59838:intron |
| CATGAAACCAAGCTGCATCA+AGG | 0.562710 | 8.3:+54169630 | MS.gene59838:CDS |
| TGAACCTCCAAATAGTTGGA+TGG | 0.602941 | 8.3:+54170919 | MS.gene59838:CDS |
| TGTCTCGAGTGCATTTGCTA+AGG | 0.617854 | 8.3:-54170946 | None:intergenic |
| ACTCTGATTCAGTTAAACAC+TGG | 0.620261 | 8.3:+54169667 | MS.gene59838:CDS |
| TAGTTTGAAGAACTTGTCAG+AGG | 0.640528 | 8.3:-54169562 | None:intergenic |
| GAAGTGATTGATAAGGCTGA+TGG | 0.645628 | 8.3:+54170845 | MS.gene59838:CDS |
| TCATCTTGTCAAGCAAGCAA+AGG | 0.651550 | 8.3:+54170976 | MS.gene59838:CDS |
| AAACACTGGACTCATGTCCG+AGG | 0.721608 | 8.3:+54169681 | MS.gene59838:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACATATTGTAAAATTT+GGG | + | chr8.3:54169920-54169939 | MS.gene59838:intron | 10.0% |
| !! | AATTCCAATAAAAATTAAAA+CGG | - | chr8.3:54170680-54170699 | None:intergenic | 10.0% |
| !! | ATCATCATTATATATAAAAT+TGG | + | chr8.3:54170400-54170419 | MS.gene59838:intron | 10.0% |
| !!! | GTTTACAATTTTTTTTTTTT+TGG | + | chr8.3:54170515-54170534 | MS.gene59838:intron | 10.0% |
| !!! | TTACAATTTTTTTTTTTTTG+GGG | + | chr8.3:54170517-54170536 | MS.gene59838:intron | 10.0% |
| !! | ACCATTAAATTAAAATTAGA+TGG | + | chr8.3:54170190-54170209 | MS.gene59838:intron | 15.0% |
| !! | AGTATAATTATAGAAACATA+TGG | - | chr8.3:54170613-54170632 | None:intergenic | 15.0% |
| !! | ATTAGAAATATAATTTACCT+CGG | - | chr8.3:54169701-54169720 | None:intergenic | 15.0% |
| !! | CAATAACATATTGTAAAATT+TGG | + | chr8.3:54169919-54169938 | MS.gene59838:intron | 15.0% |
| !!! | AGATGAATATTTTAATTGAA+CGG | + | chr8.3:54170283-54170302 | MS.gene59838:intron | 15.0% |
| !!! | ATAATTTAAAACTATTTGGT+TGG | - | chr8.3:54170472-54170491 | None:intergenic | 15.0% |
| !!! | TTAACCGTTTTAATTTTTAT+TGG | + | chr8.3:54170673-54170692 | MS.gene59838:intron | 15.0% |
| !! | AACCAATCAACAATTAATAA+TGG | + | chr8.3:54170110-54170129 | MS.gene59838:intron | 20.0% |
| !! | ATTCAAGATCAATATCAATA+TGG | - | chr8.3:54170052-54170071 | None:intergenic | 20.0% |
| !! | GATCTAAGTAAAAGATATAA+AGG | + | chr8.3:54170007-54170026 | MS.gene59838:intron | 20.0% |
| !! | TAAAAATATGACAGATCTAA+AGG | + | chr8.3:54169971-54169990 | MS.gene59838:intron | 20.0% |
| !! | TTCCATTATTAATTGTTGAT+TGG | - | chr8.3:54170115-54170134 | None:intergenic | 20.0% |
| !!! | GACATCTTTAAATTTCATTT+TGG | + | chr8.3:54169850-54169869 | MS.gene59838:intron | 20.0% |
| !!! | GCCATCTAATTTTAATTTAA+TGG | - | chr8.3:54170194-54170213 | None:intergenic | 20.0% |
| !!! | TATAAAATTGGTTGATTTGA+TGG | + | chr8.3:54170412-54170431 | MS.gene59838:intron | 20.0% |
| !!! | TTTAGATCTGTCATATTTTT+AGG | - | chr8.3:54169972-54169991 | None:intergenic | 20.0% |
| ! | ATGTACAAGTACAACTATAA+AGG | + | chr8.3:54170312-54170331 | MS.gene59838:intron | 25.0% |
| ! | ATTTCTAATAACACTAACAC+TGG | + | chr8.3:54169712-54169731 | MS.gene59838:intron | 25.0% |
| ! | GATATATATAGCAAAAGTGA+TGG | + | chr8.3:54170138-54170157 | MS.gene59838:intron | 25.0% |
| !!! | TTGTCTTCTGATTTTTAACT+TGG | + | chr8.3:54169777-54169796 | MS.gene59838:intron | 25.0% |
| AGAAATTGATGAGCACTATA+AGG | + | chr8.3:54170805-54170824 | MS.gene59838:CDS | 30.0% | |
| CATCATTGAAGTGATTGATA+AGG | + | chr8.3:54170838-54170857 | MS.gene59838:CDS | 30.0% | |
| ! | GTAAACTTAGCACTGAAATT+GGG | + | chr8.3:54169529-54169548 | MS.gene59838:CDS | 30.0% |
| ! | TTGATTTGATGGTTGGAATA+GGG | + | chr8.3:54170423-54170442 | MS.gene59838:intron | 30.0% |
| !! | AAACTATTTGGTTGGCTTTA+AGG | - | chr8.3:54170464-54170483 | None:intergenic | 30.0% |
| !! | AAATTGGTTGATTTGATGGT+TGG | + | chr8.3:54170416-54170435 | MS.gene59838:intron | 30.0% |
| !! | ACTGGATTTATGTGCTATTT+CGG | + | chr8.3:54169730-54169749 | MS.gene59838:intron | 30.0% |
| !! | ATAGCAAAAGTGATGGATTT+AGG | + | chr8.3:54170145-54170164 | MS.gene59838:intron | 30.0% |
| !! | GCTTTAAGGATCTCTAATTT+AGG | - | chr8.3:54170450-54170469 | None:intergenic | 30.0% |
| ACTCTGATTCAGTTAAACAC+TGG | + | chr8.3:54169667-54169686 | MS.gene59838:CDS | 35.0% | |
| AGGTATTCCATCCAACTATT+TGG | - | chr8.3:54170929-54170948 | None:intergenic | 35.0% | |
| ATGTTGAACCTCCAAATAGT+TGG | + | chr8.3:54170915-54170934 | MS.gene59838:CDS | 35.0% | |
| TAGTTTGAAGAACTTGTCAG+AGG | - | chr8.3:54169565-54169584 | None:intergenic | 35.0% | |
| TATTCCATCCAACTATTTGG+AGG | - | chr8.3:54170926-54170945 | None:intergenic | 35.0% | |
| ! | ATGGCTCTACTGTAGTTAAA+TGG | + | chr8.3:54170864-54170883 | MS.gene59838:CDS | 35.0% |
| ! | GGTAAACTTAGCACTGAAAT+TGG | + | chr8.3:54169528-54169547 | MS.gene59838:CDS | 35.0% |
| ! | TGATTTGATGGTTGGAATAG+GGG | + | chr8.3:54170424-54170443 | MS.gene59838:intron | 35.0% |
| !! | GTTGATTTGATGGTTGGAAT+AGG | + | chr8.3:54170422-54170441 | MS.gene59838:intron | 35.0% |
| ACCTTCGATTTCACAACAGA+GGG | + | chr8.3:54170704-54170723 | MS.gene59838:intron | 40.0% | |
| AGAATCGTCCACAAGATCTT+CGG | + | chr8.3:54170779-54170798 | MS.gene59838:CDS | 40.0% | |
| GAAGTGATTGATAAGGCTGA+TGG | + | chr8.3:54170845-54170864 | MS.gene59838:CDS | 40.0% | |
| TACCTTCGATTTCACAACAG+AGG | + | chr8.3:54170703-54170722 | MS.gene59838:intron | 40.0% | |
| TCATCTTGTCAAGCAAGCAA+AGG | + | chr8.3:54170976-54170995 | MS.gene59838:CDS | 40.0% | |
| TGAACCTCCAAATAGTTGGA+TGG | + | chr8.3:54170919-54170938 | MS.gene59838:CDS | 40.0% | |
| TTTCTTCACCGAAGATCTTG+TGG | - | chr8.3:54170790-54170809 | None:intergenic | 40.0% | |
| AGCTGCATCAAGGTGATGAA+TGG | + | chr8.3:54169640-54169659 | MS.gene59838:CDS | 45.0% | |
| CATGAAACCAAGCTGCATCA+AGG | + | chr8.3:54169630-54169649 | MS.gene59838:CDS | 45.0% | |
| TTCATCACCTTGATGCAGCT+TGG | - | chr8.3:54169640-54169659 | None:intergenic | 45.0% | |
| ! | TGTCTCGAGTGCATTTGCTA+AGG | - | chr8.3:54170949-54170968 | None:intergenic | 45.0% |
| !!! | AATAATAATTTAAAACTATT+TGG | - | chr8.3:54170476-54170495 | None:intergenic | 5.0% |
| !!! | TTTACAATTTTTTTTTTTTT+GGG | + | chr8.3:54170516-54170535 | MS.gene59838:intron | 5.0% |
| !!! | TTTTTTTTTAACAAAAAATT+GGG | + | chr8.3:54170585-54170604 | MS.gene59838:intron | 5.0% |
| !!! | TTTTTTTTTTAACAAAAAAT+TGG | + | chr8.3:54170584-54170603 | MS.gene59838:intron | 5.0% |
| AAACACTGGACTCATGTCCG+AGG | + | chr8.3:54169681-54169700 | MS.gene59838:CDS | 50.0% | |
| CGATTTCACAACAGAGGGCA+AGG | + | chr8.3:54170709-54170728 | MS.gene59838:intron | 50.0% | |
| GCCCTCTGTTGTGAAATCGA+AGG | - | chr8.3:54170708-54170727 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 54169516 | 54171009 | 54169516 | ID=MS.gene59838 |
| chr8.3 | mRNA | 54169516 | 54171009 | 54169516 | ID=MS.gene59838.t1;Parent=MS.gene59838 |
| chr8.3 | exon | 54169516 | 54169702 | 54169516 | ID=MS.gene59838.t1.exon1;Parent=MS.gene59838.t1 |
| chr8.3 | CDS | 54169516 | 54169702 | 54169516 | ID=cds.MS.gene59838.t1;Parent=MS.gene59838.t1 |
| chr8.3 | exon | 54170723 | 54171009 | 54170723 | ID=MS.gene59838.t1.exon2;Parent=MS.gene59838.t1 |
| chr8.3 | CDS | 54170723 | 54171009 | 54170723 | ID=cds.MS.gene59838.t1;Parent=MS.gene59838.t1 |
| Gene Sequence |
| Protein sequence |
