Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66109.t1 | XP_003622912.1 | 98 | 196 | 4 | 0 | 1 | 196 | 180 | 375 | 5.90E-102 | 380.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66109.t1 | G7L174 | 98.0 | 196 | 4 | 0 | 1 | 196 | 180 | 375 | 4.2e-102 | 380.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene66109 | 0.802204 | 6.27E-49 | -1.69E-46 |
| MS.gene049153 | MS.gene66109 | 0.806332 | 8.66E-50 | -1.69E-46 |
| MS.gene049351 | MS.gene66109 | 0.80639 | 8.42E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene66109 | 0.817827 | 2.69E-52 | -1.69E-46 |
| MS.gene049389 | MS.gene66109 | 0.802724 | 4.90E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene66109 | 0.874256 | 7.79E-68 | -1.69E-46 |
| MS.gene049910 | MS.gene66109 | 0.826059 | 3.34E-54 | -1.69E-46 |
| MS.gene050128 | MS.gene66109 | 0.833568 | 4.95E-56 | -1.69E-46 |
| MS.gene050301 | MS.gene66109 | 0.849919 | 2.37E-60 | -1.69E-46 |
| MS.gene050397 | MS.gene66109 | 0.824847 | 6.46E-54 | -1.69E-46 |
| MS.gene050464 | MS.gene66109 | 0.825571 | 4.36E-54 | -1.69E-46 |
| MS.gene050529 | MS.gene66109 | 0.806454 | 8.16E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene66109 | 0.823622 | 1.25E-53 | -1.69E-46 |
| MS.gene050971 | MS.gene66109 | 0.839805 | 1.27E-57 | -1.69E-46 |
| MS.gene051360 | MS.gene66109 | 0.816784 | 4.63E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene66109 | 0.850972 | 1.20E-60 | -1.69E-46 |
| MS.gene051983 | MS.gene66109 | 0.801074 | 1.07E-48 | -1.69E-46 |
| MS.gene052077 | MS.gene66109 | 0.843672 | 1.21E-58 | -1.69E-46 |
| MS.gene052078 | MS.gene66109 | 0.820049 | 8.42E-53 | -1.69E-46 |
| MS.gene052178 | MS.gene66109 | 0.834734 | 2.53E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene66109 | 0.857834 | 1.25E-62 | -1.69E-46 |
| MS.gene052207 | MS.gene66109 | 0.805765 | 1.14E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene66109 | 0.813443 | 2.55E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene66109 | 0.829872 | 4.04E-55 | -1.69E-46 |
| MS.gene052340 | MS.gene66109 | 0.84489 | 5.71E-59 | -1.69E-46 |
| MS.gene052485 | MS.gene66109 | 0.829739 | 4.35E-55 | -1.69E-46 |
| MS.gene05316 | MS.gene66109 | 0.836075 | 1.16E-56 | -1.69E-46 |
| MS.gene053209 | MS.gene66109 | 0.830392 | 3.01E-55 | -1.69E-46 |
| MS.gene053449 | MS.gene66109 | 0.816767 | 4.67E-52 | -1.69E-46 |
| MS.gene053557 | MS.gene66109 | 0.815927 | 7.19E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene66109 | 0.857007 | 2.19E-62 | -1.69E-46 |
| MS.gene053928 | MS.gene66109 | 0.833539 | 5.03E-56 | -1.69E-46 |
| MS.gene054010 | MS.gene66109 | 0.814044 | 1.88E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene66109 | 0.829067 | 6.33E-55 | -1.69E-46 |
| MS.gene054012 | MS.gene66109 | 0.810382 | 1.19E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene66109 | 0.809784 | 1.59E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene66109 | 0.810308 | 1.23E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene66109 | 0.805634 | 1.21E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene66109 | 0.808825 | 2.56E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene66109 | 0.844497 | 7.29E-59 | -1.69E-46 |
| MS.gene055390 | MS.gene66109 | 0.822754 | 2.00E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene66109 | 0.847893 | 8.67E-60 | -1.69E-46 |
| MS.gene055428 | MS.gene66109 | 0.814227 | 1.72E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene66109 | 0.805417 | 1.35E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene66109 | 0.819813 | 9.54E-53 | -1.69E-46 |
| MS.gene055666 | MS.gene66109 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene66109 | 0.812894 | 3.37E-51 | -1.69E-46 |
| MS.gene056314 | MS.gene66109 | 0.811594 | 6.47E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene66109 | 0.844183 | 8.85E-59 | -1.69E-46 |
| MS.gene056410 | MS.gene66109 | 0.831908 | 1.28E-55 | -1.69E-46 |
| MS.gene05702 | MS.gene66109 | 0.813425 | 2.58E-51 | -1.69E-46 |
| MS.gene057448 | MS.gene66109 | 0.846647 | 1.90E-59 | -1.69E-46 |
| MS.gene057449 | MS.gene66109 | 0.821823 | 3.29E-53 | -1.69E-46 |
| MS.gene057450 | MS.gene66109 | 0.854921 | 8.92E-62 | -1.69E-46 |
| MS.gene057469 | MS.gene66109 | 0.810041 | 1.40E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene66109 | 0.800024 | 1.75E-48 | -1.69E-46 |
| MS.gene057796 | MS.gene66109 | 0.805951 | 1.04E-49 | -1.69E-46 |
| MS.gene057799 | MS.gene66109 | 0.80339 | 3.57E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene66109 | 0.816816 | 4.55E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene66109 | 0.833592 | 4.88E-56 | -1.69E-46 |
| MS.gene05811 | MS.gene66109 | 0.878582 | 2.50E-69 | -1.69E-46 |
| MS.gene058293 | MS.gene66109 | 0.811092 | 8.32E-51 | -1.69E-46 |
| MS.gene05842 | MS.gene66109 | 0.82022 | 7.70E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene66109 | 0.813903 | 2.02E-51 | -1.69E-46 |
| MS.gene058787 | MS.gene66109 | 0.808445 | 3.09E-50 | -1.69E-46 |
| MS.gene058845 | MS.gene66109 | 0.813092 | 3.05E-51 | -1.69E-46 |
| MS.gene058928 | MS.gene66109 | 0.816446 | 5.51E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene66109 | 0.871792 | 5.22E-67 | -1.69E-46 |
| MS.gene059294 | MS.gene66109 | 0.829144 | 6.07E-55 | -1.69E-46 |
| MS.gene059366 | MS.gene66109 | 0.814699 | 1.35E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene66109 | 0.811934 | 5.46E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene66109 | 0.840409 | 8.85E-58 | -1.69E-46 |
| MS.gene059597 | MS.gene66109 | 0.836128 | 1.12E-56 | -1.69E-46 |
| MS.gene05959 | MS.gene66109 | 0.800975 | 1.12E-48 | -1.69E-46 |
| MS.gene059676 | MS.gene66109 | 0.851488 | 8.59E-61 | -1.69E-46 |
| MS.gene059688 | MS.gene66109 | 0.838553 | 2.69E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene66109 | 0.840539 | 8.18E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene66109 | 0.838578 | 2.65E-57 | -1.69E-46 |
| MS.gene059807 | MS.gene66109 | 0.82496 | 6.08E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene66109 | 0.853606 | 2.14E-61 | -1.69E-46 |
| MS.gene059894 | MS.gene66109 | 0.841455 | 4.70E-58 | -1.69E-46 |
| MS.gene059974 | MS.gene66109 | 0.816862 | 4.44E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene66109 | 0.851408 | 9.05E-61 | -1.69E-46 |
| MS.gene060403 | MS.gene66109 | 0.812922 | 3.32E-51 | -1.69E-46 |
| MS.gene060495 | MS.gene66109 | 0.816435 | 5.54E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene66109 | 0.806983 | 6.31E-50 | -1.69E-46 |
| MS.gene060986 | MS.gene66109 | 0.840812 | 6.94E-58 | -1.69E-46 |
| MS.gene061049 | MS.gene66109 | 0.859927 | 2.95E-63 | -1.69E-46 |
| MS.gene061051 | MS.gene66109 | -0.819938 | 8.93E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene66109 | 0.818217 | 2.20E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66109.t1 | MTR_7g057180 | 97.959 | 196 | 4 | 0 | 1 | 196 | 180 | 375 | 1.58e-136 | 387 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66109.t1 | AT4G13150 | 80.928 | 194 | 37 | 0 | 1 | 194 | 150 | 343 | 6.71e-114 | 328 |
| MS.gene66109.t1 | AT4G13150 | 79.259 | 135 | 28 | 0 | 1 | 135 | 150 | 284 | 3.17e-75 | 228 |
| MS.gene66109.t1 | AT4G13150 | 82.540 | 126 | 22 | 0 | 1 | 126 | 150 | 275 | 1.56e-73 | 223 |
| MS.gene66109.t1 | AT4G13150 | 82.243 | 107 | 19 | 0 | 1 | 107 | 150 | 256 | 6.08e-61 | 191 |
| MS.gene66109.t1 | AT4G13150 | 82.243 | 107 | 19 | 0 | 1 | 107 | 150 | 256 | 6.08e-61 | 191 |
Find 35 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAAGAGGCTTTAAATATT+TGG | 0.131301 | 7.4:-45545267 | MS.gene66109:CDS |
| CAACCATTCTATGGGTTTAT+TGG | 0.145309 | 7.4:-45545051 | MS.gene66109:intron |
| CAAAAGTATGGCAATCTTAT+TGG | 0.194129 | 7.4:-45544307 | MS.gene66109:CDS |
| GAAAAGCTTCCCCAAGTAAA+AGG | 0.226285 | 7.4:+45544919 | None:intergenic |
| TATGGCAATCTTATTGGTTT+TGG | 0.243971 | 7.4:-45544301 | MS.gene66109:intron |
| ACATCATATCAACCATTCTA+TGG | 0.260358 | 7.4:-45545060 | MS.gene66109:CDS |
| TCTGTTCACACTTTCCATTC+AGG | 0.270300 | 7.4:-45543715 | MS.gene66109:intron |
| AACCCTACAGCTTTCCTTGC+AGG | 0.276788 | 7.4:-45544123 | MS.gene66109:CDS |
| TGAAGAGGCTTTAAATATTT+GGG | 0.312257 | 7.4:-45545266 | MS.gene66109:intron |
| ATATGTGATCAGCTTGGAAT+AGG | 0.354232 | 7.4:-45543578 | MS.gene66109:intron |
| TCACATTATTATTACCATTA+CGG | 0.360639 | 7.4:+45543508 | None:intergenic |
| TTCTGGTTGCTTATGGCTGC+AGG | 0.373324 | 7.4:-45545307 | None:intergenic |
| GTTGAAGCAGCCACAGCATA+TGG | 0.393534 | 7.4:+45543393 | None:intergenic |
| ACAGACGTTGTACAAAAGTA+TGG | 0.398457 | 7.4:-45544319 | MS.gene66109:CDS |
| AGCTTTCCTTGCAGGAGCCT+TGG | 0.416636 | 7.4:-45544115 | MS.gene66109:intron |
| GCAGTTGAACGATTCTCTCT+TGG | 0.419870 | 7.4:-45544153 | MS.gene66109:intron |
| TTGCTTATGGCTGCAGGTTG+CGG | 0.464815 | 7.4:-45545301 | None:intergenic |
| CATCTGCTGATGTTACTTCA+AGG | 0.466645 | 7.4:-45544883 | MS.gene66109:CDS |
| ATATCGGCCGTTCCCTCAAA+AGG | 0.477162 | 7.4:+45543552 | None:intergenic |
| TGCTACTGTCGCAACCGTAA+TGG | 0.508904 | 7.4:-45543522 | MS.gene66109:intron |
| TTCTGTCTCTCGACGGAACA+TGG | 0.512776 | 7.4:-45545120 | MS.gene66109:CDS |
| AAAAGCTTCCCCAAGTAAAA+GGG | 0.514440 | 7.4:+45544920 | None:intergenic |
| GTGCTTCATATTCACCTGAA+TGG | 0.522082 | 7.4:+45543701 | None:intergenic |
| CATCATATCAACCATTCTAT+GGG | 0.523229 | 7.4:-45545059 | MS.gene66109:CDS |
| ACAGTAGCAAGAGCAAATAT+CGG | 0.537808 | 7.4:+45543536 | None:intergenic |
| TTACCAATAAACCCATAGAA+TGG | 0.544074 | 7.4:+45545048 | None:intergenic |
| CTCCTGCAAGGAAAGCTGTA+GGG | 0.562405 | 7.4:+45544121 | None:intergenic |
| GCTCCTGCAAGGAAAGCTGT+AGG | 0.568204 | 7.4:+45544120 | None:intergenic |
| AGAATGGTTGATATGATGTA+CGG | 0.574452 | 7.4:+45545064 | None:intergenic |
| TGGTGTCAACAGTTAGGCAT+TGG | 0.575572 | 7.4:-45544364 | MS.gene66109:intron |
| GTTAGGCATTGGTAAAGAGA+AGG | 0.598947 | 7.4:-45544353 | MS.gene66109:CDS |
| CACTAACCAAGGCTCCTGCA+AGG | 0.600373 | 7.4:+45544109 | None:intergenic |
| ATCTGCTGATGTTACTTCAA+GGG | 0.608875 | 7.4:-45544882 | MS.gene66109:intron |
| GCAAGGCTTCTGTCTCTCGA+CGG | 0.653198 | 7.4:-45545127 | MS.gene66109:CDS |
| AGGTTGGTACGTCAATAGCA+AGG | 0.665184 | 7.4:-45545144 | MS.gene66109:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAATTAAAAAATAAAA+AGG | + | chr7.4:45545214-45545233 | None:intergenic | 0.0% |
| !! | ATAATTATTATCCATATAAA+AGG | + | chr7.4:45544853-45544872 | None:intergenic | 10.0% |
| !! | ATTAAATATCTTAAAAACAA+AGG | + | chr7.4:45543484-45543503 | None:intergenic | 10.0% |
| !! | TAACTTTATCAAATATAAAA+GGG | + | chr7.4:45544577-45544596 | None:intergenic | 10.0% |
| !! | TAATTATTATCCATATAAAA+GGG | + | chr7.4:45544852-45544871 | None:intergenic | 10.0% |
| !!! | ATTTTATTCACAAATATTTT+TGG | - | chr7.4:45544261-45544280 | MS.gene66109:intron | 10.0% |
| !!! | ATTTTGTTAAAAAAAAAACT+TGG | - | chr7.4:45544826-45544845 | MS.gene66109:intron | 10.0% |
| !!! | TTGTTTTTAAGATATTTAAT+AGG | - | chr7.4:45543484-45543503 | MS.gene66109:intron | 10.0% |
| !! | CTAACTTTATCAAATATAAA+AGG | + | chr7.4:45544578-45544597 | None:intergenic | 15.0% |
| !!! | CTTTTATATTTGATAAAGTT+AGG | - | chr7.4:45544576-45544595 | MS.gene66109:intron | 15.0% |
| !!! | TTTTAAGATATTTAATAGGT+TGG | - | chr7.4:45543488-45543507 | MS.gene66109:intron | 15.0% |
| !! | AAAAGAACTCATATTAACAA+GGG | - | chr7.4:45544613-45544632 | MS.gene66109:intron | 20.0% |
| !! | AAAATTGCTTCTAATTAACT+TGG | - | chr7.4:45544779-45544798 | MS.gene66109:intron | 20.0% |
| !! | ATACTTATACATAAAGACAT+GGG | + | chr7.4:45544410-45544429 | None:intergenic | 20.0% |
| !! | TAAAAGAACTCATATTAACA+AGG | - | chr7.4:45544612-45544631 | MS.gene66109:intron | 20.0% |
| !! | TATACTTATACATAAAGACA+TGG | + | chr7.4:45544411-45544430 | None:intergenic | 20.0% |
| !! | TCACATTATTATTACCATTA+CGG | + | chr7.4:45545143-45545162 | None:intergenic | 20.0% |
| !! | TTATATTTGATAAAGTTAGG+TGG | - | chr7.4:45544579-45544598 | MS.gene66109:intron | 20.0% |
| !! | TTATCTAATGACATAAACAA+GGG | - | chr7.4:45543871-45543890 | MS.gene66109:intron | 20.0% |
| !! | TTTATCTAATGACATAAACA+AGG | - | chr7.4:45543870-45543889 | MS.gene66109:intron | 20.0% |
| !!! | AATTAGAAGCAATTTTACTT+TGG | + | chr7.4:45544775-45544794 | None:intergenic | 20.0% |
| !!! | ATTAGAAGCAATTTTACTTT+GGG | + | chr7.4:45544774-45544793 | None:intergenic | 20.0% |
| !!! | GTCATATTATTTTCATAACT+AGG | + | chr7.4:45544098-45544117 | None:intergenic | 20.0% |
| !!! | TTAATTTTATACAGGGAATT+TGG | - | chr7.4:45545223-45545242 | MS.gene66109:intron | 20.0% |
| !!! | TTATTCACAAATATTTTTGG+TGG | - | chr7.4:45544264-45544283 | MS.gene66109:intron | 20.0% |
| !!! | TTTAGTTCAGATTTATACAT+TGG | - | chr7.4:45543827-45543846 | MS.gene66109:intron | 20.0% |
| ! | AAACTATTAATCACTAACCA+AGG | + | chr7.4:45544553-45544572 | None:intergenic | 25.0% |
| ! | TATCTAATGACATAAACAAG+GGG | - | chr7.4:45543872-45543891 | MS.gene66109:intron | 25.0% |
| ! | TTATTCACAAACCACATTAA+AGG | + | chr7.4:45544641-45544660 | None:intergenic | 25.0% |
| !! | AAAAACTACTGATTGTTTCA+GGG | - | chr7.4:45543682-45543701 | MS.gene66109:intron | 25.0% |
| !! | TGGTTTGTGAATAATACATT+GGG | - | chr7.4:45544647-45544666 | MS.gene66109:intron | 25.0% |
| !!! | AATTATTTTTCTTCAAGTGC+AGG | - | chr7.4:45544867-45544886 | MS.gene66109:intron | 25.0% |
| !!! | ATTATTTTTCTTCAAGTGCA+GGG | - | chr7.4:45544868-45544887 | MS.gene66109:intron | 25.0% |
| !!! | TGAAGAGGCTTTAAATATTT+GGG | - | chr7.4:45543382-45543401 | MS.gene66109:CDS | 25.0% |
| ACATCATATCAACCATTCTA+TGG | - | chr7.4:45543588-45543607 | MS.gene66109:intron | 30.0% | |
| ATCTAATGACATAAACAAGG+GGG | - | chr7.4:45543873-45543892 | MS.gene66109:intron | 30.0% | |
| CATCATATCAACCATTCTAT+GGG | - | chr7.4:45543589-45543608 | MS.gene66109:intron | 30.0% | |
| CATGCTAATGAATCATTAGT+TGG | - | chr7.4:45544716-45544735 | MS.gene66109:intron | 30.0% | |
| GAACTTATATAATAAGCGCT+TGG | - | chr7.4:45544158-45544177 | MS.gene66109:intron | 30.0% | |
| GTTGTACATAATACTTCCTT+CGG | - | chr7.4:45543792-45543811 | MS.gene66109:intron | 30.0% | |
| TCATTAGATAAACCACTTGT+TGG | + | chr7.4:45543862-45543881 | None:intergenic | 30.0% | |
| TTAAGCTGTTTATCGAAACA+CGG | - | chr7.4:45544185-45544204 | MS.gene66109:intron | 30.0% | |
| TTACCAATAAACCCATAGAA+TGG | + | chr7.4:45543603-45543622 | None:intergenic | 30.0% | |
| ! | AAAAACTTGGCCCTTTTATA+TGG | - | chr7.4:45544839-45544858 | MS.gene66109:intron | 30.0% |
| ! | AAAACTACTGATTGTTTCAG+GGG | - | chr7.4:45543683-45543702 | MS.gene66109:intron | 30.0% |
| ! | AATCTGAACTAAACTGATTC+AGG | + | chr7.4:45543820-45543839 | None:intergenic | 30.0% |
| ! | AGAATGGTTGATATGATGTA+CGG | + | chr7.4:45543587-45543606 | None:intergenic | 30.0% |
| ! | CAAAAACTACTGATTGTTTC+AGG | - | chr7.4:45543681-45543700 | MS.gene66109:intron | 30.0% |
| ! | CAAAAGTATGGCAATCTTAT+TGG | - | chr7.4:45544341-45544360 | MS.gene66109:CDS | 30.0% |
| ! | GTGGTTTGTGAATAATACAT+TGG | - | chr7.4:45544646-45544665 | MS.gene66109:intron | 30.0% |
| !! | GTGAAGAGGCTTTAAATATT+TGG | - | chr7.4:45543381-45543400 | MS.gene66109:CDS | 30.0% |
| !!! | AAAGGTGTTTTCAATTCAAC+GGG | + | chr7.4:45543466-45543485 | None:intergenic | 30.0% |
| !!! | CAAAGGTGTTTTCAATTCAA+CGG | + | chr7.4:45543467-45543486 | None:intergenic | 30.0% |
| !!! | TATGGCAATCTTATTGGTTT+TGG | - | chr7.4:45544347-45544366 | MS.gene66109:CDS | 30.0% |
| AAAAGCTTCCCCAAGTAAAA+GGG | + | chr7.4:45543731-45543750 | None:intergenic | 35.0% | |
| ACAGACGTTGTACAAAAGTA+TGG | - | chr7.4:45544329-45544348 | MS.gene66109:CDS | 35.0% | |
| ACAGTAGCAAGAGCAAATAT+CGG | + | chr7.4:45545115-45545134 | None:intergenic | 35.0% | |
| ATATGTGATCAGCTTGGAAT+AGG | - | chr7.4:45545070-45545089 | MS.gene66109:CDS | 35.0% | |
| CAACCATTCTATGGGTTTAT+TGG | - | chr7.4:45543597-45543616 | MS.gene66109:intron | 35.0% | |
| CAAGCTGATCACATATGAAA+AGG | + | chr7.4:45545066-45545085 | None:intergenic | 35.0% | |
| GAGTAAGCAAGTTTCTAATG+CGG | - | chr7.4:45545023-45545042 | MS.gene66109:intron | 35.0% | |
| GTCACATGACAACAACTTTA+AGG | + | chr7.4:45543912-45543931 | None:intergenic | 35.0% | |
| TCCATAAGCTCTCTCAAAAA+GGG | + | chr7.4:45544070-45544089 | None:intergenic | 35.0% | |
| TTATACATAAAGACATGGGC+AGG | + | chr7.4:45544406-45544425 | None:intergenic | 35.0% | |
| TTCCATAAGCTCTCTCAAAA+AGG | + | chr7.4:45544071-45544090 | None:intergenic | 35.0% | |
| TTGGGATAGATATACTCATC+TGG | + | chr7.4:45544756-45544775 | None:intergenic | 35.0% | |
| ! | ACATGATACCCTTTTACTTG+GGG | - | chr7.4:45543720-45543739 | MS.gene66109:CDS | 35.0% |
| ! | ATCTGCTGATGTTACTTCAA+GGG | - | chr7.4:45543766-45543785 | MS.gene66109:intron | 35.0% |
| ! | CGTTATTCTTTTATGTCAGG+CGG | - | chr7.4:45545280-45545299 | MS.gene66109:CDS | 35.0% |
| ! | CTGCGTTATTCTTTTATGTC+AGG | - | chr7.4:45545277-45545296 | MS.gene66109:CDS | 35.0% |
| ! | CTTTTCATATGTGATCAGCT+TGG | - | chr7.4:45545064-45545083 | MS.gene66109:CDS | 35.0% |
| ! | GACAATTTTTCCATATGCTG+TGG | - | chr7.4:45545245-45545264 | MS.gene66109:intron | 35.0% |
| ! | GACATGATACCCTTTTACTT+GGG | - | chr7.4:45543719-45543738 | MS.gene66109:CDS | 35.0% |
| ! | GCTTCTAATTAACTTGGTCA+TGG | - | chr7.4:45544785-45544804 | MS.gene66109:intron | 35.0% |
| ! | TGACATGATACCCTTTTACT+TGG | - | chr7.4:45543718-45543737 | MS.gene66109:CDS | 35.0% |
| ! | TGGAATAGGATTCCTTTTGA+GGG | - | chr7.4:45545084-45545103 | MS.gene66109:CDS | 35.0% |
| ! | TTGGAATAGGATTCCTTTTG+AGG | - | chr7.4:45545083-45545102 | MS.gene66109:CDS | 35.0% |
| AGCCTCTTGCGTAAAAAACA+GGG | - | chr7.4:45543961-45543980 | MS.gene66109:intron | 40.0% | |
| CGTACTATACACCAAATGGT+TGG | - | chr7.4:45543992-45544011 | MS.gene66109:intron | 40.0% | |
| GAAAAGCTTCCCCAAGTAAA+AGG | + | chr7.4:45543732-45543751 | None:intergenic | 40.0% | |
| GTCATGTGACTGAAAGGTTT+GGG | - | chr7.4:45543922-45543941 | MS.gene66109:intron | 40.0% | |
| GTGCTTCATATTCACCTGAA+TGG | + | chr7.4:45544950-45544969 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr7.4:45543916-45543935 | MS.gene66109:intron | 40.0% | |
| TAACAAGGGCTCCTTTAATG+TGG | - | chr7.4:45544627-45544646 | MS.gene66109:intron | 40.0% | |
| TCTGTTCACACTTTCCATTC+AGG | - | chr7.4:45544933-45544952 | MS.gene66109:CDS | 40.0% | |
| TGTCATGTGACTGAAAGGTT+TGG | - | chr7.4:45543921-45543940 | MS.gene66109:intron | 40.0% | |
| ! | AAAGGTTTGGGTTCAATTCC+TGG | - | chr7.4:45543934-45543953 | MS.gene66109:intron | 40.0% |
| ! | CATCTGCTGATGTTACTTCA+AGG | - | chr7.4:45543765-45543784 | MS.gene66109:intron | 40.0% |
| ! | TAAACTGATTCAGGTTCCGA+AGG | + | chr7.4:45543811-45543830 | None:intergenic | 40.0% |
| !! | GTCATGGTGATGATTTTGCA+TGG | - | chr7.4:45544801-45544820 | MS.gene66109:intron | 40.0% |
| !! | GTTAGGCATTGGTAAAGAGA+AGG | - | chr7.4:45544295-45544314 | MS.gene66109:intron | 40.0% |
| !! | TAGGATTCCTTTTGAGGGAA+CGG | - | chr7.4:45545089-45545108 | MS.gene66109:CDS | 40.0% |
| !! | TTTTTGCAGGGGTGTGTTTT+GGG | - | chr7.4:45544908-45544927 | MS.gene66109:CDS | 40.0% |
| !!! | CTCCAGAGTTGTTTTTTGCA+GGG | - | chr7.4:45544896-45544915 | MS.gene66109:CDS | 40.0% |
| !!! | TCCAGAGTTGTTTTTTGCAG+GGG | - | chr7.4:45544897-45544916 | MS.gene66109:CDS | 40.0% |
| !!! | TCTCCAGAGTTGTTTTTTGC+AGG | - | chr7.4:45544895-45544914 | MS.gene66109:CDS | 40.0% |
| !!! | TTTTGGTGGTGTCAACAGTT+AGG | - | chr7.4:45544278-45544297 | MS.gene66109:intron | 40.0% |
| !!! | TTTTTTGCAGGGGTGTGTTT+TGG | - | chr7.4:45544907-45544926 | MS.gene66109:CDS | 40.0% |
| AAGCTCTCTCAAAAAGGGCA+GGG | + | chr7.4:45544065-45544084 | None:intergenic | 45.0% | |
| ACCCCTGCAAAAAACAACTC+TGG | + | chr7.4:45544901-45544920 | None:intergenic | 45.0% | |
| CAGCCTCTTGCGTAAAAAAC+AGG | - | chr7.4:45543960-45543979 | MS.gene66109:intron | 45.0% | |
| CTTGCGTAAAAAACAGGGCA+AGG | - | chr7.4:45543966-45543985 | MS.gene66109:intron | 45.0% | |
| GCAGTTGAACGATTCTCTCT+TGG | - | chr7.4:45544495-45544514 | MS.gene66109:intron | 45.0% | |
| GCTGCGTACTATACACCAAA+TGG | - | chr7.4:45543988-45544007 | MS.gene66109:intron | 45.0% | |
| TAAGCTCTCTCAAAAAGGGC+AGG | + | chr7.4:45544066-45544085 | None:intergenic | 45.0% | |
| TGGAGATCGAATCCAACAAG+TGG | - | chr7.4:45543847-45543866 | MS.gene66109:intron | 45.0% | |
| ! | ATACTCATCTGGCTTCAGCT+TGG | + | chr7.4:45544745-45544764 | None:intergenic | 45.0% |
| ! | CGGTCTTTTCATCAGTGAAG+AGG | - | chr7.4:45543367-45543386 | MS.gene66109:CDS | 45.0% |
| ! | GGGAAGCTTTTCAGAAAGTC+TGG | - | chr7.4:45543740-45543759 | MS.gene66109:CDS | 45.0% |
| ! | TGGTGTCAACAGTTAGGCAT+TGG | - | chr7.4:45544284-45544303 | MS.gene66109:intron | 45.0% |
| ! | TTTGGGTCTGTGCTTTTCAC+TGG | - | chr7.4:45543399-45543418 | MS.gene66109:CDS | 45.0% |
| !! | ACAACTTTAAGGTTGCGCCA+AGG | + | chr7.4:45543901-45543920 | None:intergenic | 45.0% |
| !! | AGGTTGGTACGTCAATAGCA+AGG | - | chr7.4:45543504-45543523 | MS.gene66109:intron | 45.0% |
| !! | GCCCTTTTTGAGAGAGCTTA+TGG | - | chr7.4:45544066-45544085 | MS.gene66109:intron | 45.0% |
| !! | TTTTGCAGGGGTGTGTTTTG+GGG | - | chr7.4:45544909-45544928 | MS.gene66109:CDS | 45.0% |
| !!! | TGCCCTGTTTTTTACGCAAG+AGG | + | chr7.4:45543966-45543985 | None:intergenic | 45.0% |
| !!! | ATTTAATTTTTTTATATACA+AGG | - | chr7.4:45545001-45545020 | MS.gene66109:intron | 5.0% |
| !!! | TTATTTTTTAATTTTATACA+GGG | - | chr7.4:45545216-45545235 | MS.gene66109:intron | 5.0% |
| !!! | TTTATTTTTTAATTTTATAC+AGG | - | chr7.4:45545215-45545234 | MS.gene66109:intron | 5.0% |
| AACCCTACAGCTTTCCTTGC+AGG | - | chr7.4:45544525-45544544 | MS.gene66109:intron | 50.0% | |
| ACATAAACAAGGGGGAGCCT+TGG | - | chr7.4:45543881-45543900 | MS.gene66109:intron | 50.0% | |
| ATATCGGCCGTTCCCTCAAA+AGG | + | chr7.4:45545099-45545118 | None:intergenic | 50.0% | |
| CTCCTGCAAGGAAAGCTGTA+GGG | + | chr7.4:45544530-45544549 | None:intergenic | 50.0% | |
| GTTGAAGCAGCCACAGCATA+TGG | + | chr7.4:45545258-45545277 | None:intergenic | 50.0% | |
| TGCTACTGTCGCAACCGTAA+TGG | - | chr7.4:45545126-45545145 | MS.gene66109:CDS | 50.0% | |
| TTCTGTCTCTCGACGGAACA+TGG | - | chr7.4:45543528-45543547 | MS.gene66109:CDS | 50.0% | |
| ! | TTACGCAAGAGGCTGTTTCC+AGG | + | chr7.4:45543955-45543974 | None:intergenic | 50.0% |
| !! | TTTGCAGGGGTGTGTTTTGG+GGG | - | chr7.4:45544910-45544929 | MS.gene66109:CDS | 50.0% |
| ACAGAGCTACCGCATACGCA+GGG | + | chr7.4:45544031-45544050 | None:intergenic | 55.0% | |
| AGCTTTCCTTGCAGGAGCCT+TGG | - | chr7.4:45544533-45544552 | MS.gene66109:intron | 55.0% | |
| CAAATGGTTGGACGCCTTCC+CGG | - | chr7.4:45544004-45544023 | MS.gene66109:intron | 55.0% | |
| CACTAACCAAGGCTCCTGCA+AGG | + | chr7.4:45544542-45544561 | None:intergenic | 55.0% | |
| GCAAGGCTTCTGTCTCTCGA+CGG | - | chr7.4:45543521-45543540 | MS.gene66109:intron | 55.0% | |
| GCTCCTGCAAGGAAAGCTGT+AGG | + | chr7.4:45544531-45544550 | None:intergenic | 55.0% | |
| ! | TATGCGGTAGCTCTGTGCAC+CGG | - | chr7.4:45544035-45544054 | MS.gene66109:intron | 55.0% |
| CACAGAGCTACCGCATACGC+AGG | + | chr7.4:45544032-45544051 | None:intergenic | 60.0% | |
| TCAAAAAGGGCAGGGCAGCC+CGG | + | chr7.4:45544057-45544076 | None:intergenic | 60.0% | |
| ! | ATGCGGTAGCTCTGTGCACC+GGG | - | chr7.4:45544036-45544055 | MS.gene66109:intron | 60.0% |
| !! | CGGGAAGGCGTCCAACCATT+TGG | + | chr7.4:45544006-45544025 | None:intergenic | 60.0% |
| CTACCGCATACGCAGGGTCC+GGG | + | chr7.4:45544025-45544044 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr7.4:45544019-45544038 | MS.gene66109:intron | 65.0% | |
| GCTACCGCATACGCAGGGTC+CGG | + | chr7.4:45544026-45544045 | None:intergenic | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr7.4:45544021-45544040 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 45543353 | 45545317 | 45543353 | ID=MS.gene66109 |
| chr7.4 | mRNA | 45543353 | 45545317 | 45543353 | ID=MS.gene66109.t1;Parent=MS.gene66109 |
| chr7.4 | exon | 45545267 | 45545317 | 45545267 | ID=MS.gene66109.t1.exon1;Parent=MS.gene66109.t1 |
| chr7.4 | CDS | 45545267 | 45545317 | 45545267 | ID=cds.MS.gene66109.t1;Parent=MS.gene66109.t1 |
| chr7.4 | exon | 45545052 | 45545164 | 45545052 | ID=MS.gene66109.t1.exon2;Parent=MS.gene66109.t1 |
| chr7.4 | CDS | 45545052 | 45545164 | 45545052 | ID=cds.MS.gene66109.t1;Parent=MS.gene66109.t1 |
| chr7.4 | exon | 45544883 | 45544967 | 45544883 | ID=MS.gene66109.t1.exon3;Parent=MS.gene66109.t1 |
| chr7.4 | CDS | 45544883 | 45544967 | 45544883 | ID=cds.MS.gene66109.t1;Parent=MS.gene66109.t1 |
| chr7.4 | exon | 45544302 | 45544374 | 45544302 | ID=MS.gene66109.t1.exon4;Parent=MS.gene66109.t1 |
| chr7.4 | CDS | 45544302 | 45544374 | 45544302 | ID=cds.MS.gene66109.t1;Parent=MS.gene66109.t1 |
| chr7.4 | exon | 45544116 | 45544171 | 45544116 | ID=MS.gene66109.t1.exon5;Parent=MS.gene66109.t1 |
| chr7.4 | CDS | 45544116 | 45544171 | 45544116 | ID=cds.MS.gene66109.t1;Parent=MS.gene66109.t1 |
| chr7.4 | exon | 45543716 | 45543781 | 45543716 | ID=MS.gene66109.t1.exon6;Parent=MS.gene66109.t1 |
| chr7.4 | CDS | 45543716 | 45543781 | 45543716 | ID=cds.MS.gene66109.t1;Parent=MS.gene66109.t1 |
| chr7.4 | exon | 45543523 | 45543588 | 45543523 | ID=MS.gene66109.t1.exon7;Parent=MS.gene66109.t1 |
| chr7.4 | CDS | 45543523 | 45543588 | 45543523 | ID=cds.MS.gene66109.t1;Parent=MS.gene66109.t1 |
| chr7.4 | exon | 45543353 | 45543433 | 45543353 | ID=MS.gene66109.t1.exon8;Parent=MS.gene66109.t1 |
| chr7.4 | CDS | 45543353 | 45543433 | 45543353 | ID=cds.MS.gene66109.t1;Parent=MS.gene66109.t1 |
| Gene Sequence |
| Protein sequence |
