Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73273.t1 | XP_003604815.1 | 98 | 252 | 5 | 0 | 1 | 252 | 99 | 350 | 1.70E-138 | 501.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73273.t1 | Q9ZW11 | 32.5 | 160 | 86 | 7 | 6 | 144 | 103 | 261 | 4.2e-08 | 60.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73273.t1 | G7JR99 | 98.0 | 252 | 5 | 0 | 1 | 252 | 99 | 350 | 1.2e-138 | 501.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049378 | MS.gene73273 | 0.846139 | 2.62E-59 | -1.69E-46 |
MS.gene049435 | MS.gene73273 | 0.813439 | 2.56E-51 | -1.69E-46 |
MS.gene049501 | MS.gene73273 | 0.814376 | 1.59E-51 | -1.69E-46 |
MS.gene049647 | MS.gene73273 | 0.811513 | 6.74E-51 | -1.69E-46 |
MS.gene049758 | MS.gene73273 | 0.80941 | 1.92E-50 | -1.69E-46 |
MS.gene04984 | MS.gene73273 | 0.820315 | 7.32E-53 | -1.69E-46 |
MS.gene050226 | MS.gene73273 | 0.836777 | 7.67E-57 | -1.69E-46 |
MS.gene050227 | MS.gene73273 | 0.83994 | 1.17E-57 | -1.69E-46 |
MS.gene050228 | MS.gene73273 | 0.83266 | 8.33E-56 | -1.69E-46 |
MS.gene050438 | MS.gene73273 | 0.821841 | 3.26E-53 | -1.69E-46 |
MS.gene050442 | MS.gene73273 | 0.842706 | 2.20E-58 | -1.69E-46 |
MS.gene050623 | MS.gene73273 | -0.828122 | 1.07E-54 | -1.69E-46 |
MS.gene050629 | MS.gene73273 | -0.808207 | 3.47E-50 | -1.69E-46 |
MS.gene050719 | MS.gene73273 | 0.835281 | 1.84E-56 | -1.69E-46 |
MS.gene050721 | MS.gene73273 | 0.834458 | 2.96E-56 | -1.69E-46 |
MS.gene050724 | MS.gene73273 | 0.839408 | 1.61E-57 | -1.69E-46 |
MS.gene050762 | MS.gene73273 | 0.84006 | 1.09E-57 | -1.69E-46 |
MS.gene050763 | MS.gene73273 | 0.842754 | 2.13E-58 | -1.69E-46 |
MS.gene050787 | MS.gene73273 | 0.88707 | 1.97E-72 | -1.69E-46 |
MS.gene050807 | MS.gene73273 | 0.80771 | 4.42E-50 | -1.69E-46 |
MS.gene050815 | MS.gene73273 | 0.810935 | 9.00E-51 | -1.69E-46 |
MS.gene050824 | MS.gene73273 | 0.805684 | 1.19E-49 | -1.69E-46 |
MS.gene050826 | MS.gene73273 | 0.817142 | 3.84E-52 | -1.69E-46 |
MS.gene050844 | MS.gene73273 | 0.806904 | 6.56E-50 | -1.69E-46 |
MS.gene050959 | MS.gene73273 | 0.827859 | 1.24E-54 | -1.69E-46 |
MS.gene05119 | MS.gene73273 | -0.828955 | 6.74E-55 | -1.69E-46 |
MS.gene051210 | MS.gene73273 | 0.823155 | 1.61E-53 | -1.69E-46 |
MS.gene051265 | MS.gene73273 | 0.813303 | 2.74E-51 | -1.69E-46 |
MS.gene051388 | MS.gene73273 | 0.810146 | 1.33E-50 | -1.69E-46 |
MS.gene051860 | MS.gene73273 | 0.840298 | 9.46E-58 | -1.69E-46 |
MS.gene052042 | MS.gene73273 | 0.801955 | 7.05E-49 | -1.69E-46 |
MS.gene052665 | MS.gene73273 | 0.835454 | 1.66E-56 | -1.69E-46 |
MS.gene052673 | MS.gene73273 | -0.804918 | 1.72E-49 | -1.69E-46 |
MS.gene052863 | MS.gene73273 | 0.806943 | 6.43E-50 | -1.69E-46 |
MS.gene052896 | MS.gene73273 | 0.839825 | 1.26E-57 | -1.69E-46 |
MS.gene053184 | MS.gene73273 | 0.800243 | 1.58E-48 | -1.69E-46 |
MS.gene053221 | MS.gene73273 | 0.860726 | 1.69E-63 | -1.69E-46 |
MS.gene053836 | MS.gene73273 | 0.837858 | 4.06E-57 | -1.69E-46 |
MS.gene054379 | MS.gene73273 | 0.853429 | 2.40E-61 | -1.69E-46 |
MS.gene054467 | MS.gene73273 | 0.84229 | 2.83E-58 | -1.69E-46 |
MS.gene054468 | MS.gene73273 | 0.857906 | 1.19E-62 | -1.69E-46 |
MS.gene054472 | MS.gene73273 | 0.817329 | 3.49E-52 | -1.69E-46 |
MS.gene054473 | MS.gene73273 | 0.850895 | 1.26E-60 | -1.69E-46 |
MS.gene05468 | MS.gene73273 | 0.812527 | 4.05E-51 | -1.69E-46 |
MS.gene054930 | MS.gene73273 | 0.834414 | 3.04E-56 | -1.69E-46 |
MS.gene055356 | MS.gene73273 | 0.830281 | 3.21E-55 | -1.69E-46 |
MS.gene055357 | MS.gene73273 | 0.810254 | 1.26E-50 | -1.69E-46 |
MS.gene055358 | MS.gene73273 | 0.83853 | 2.72E-57 | -1.69E-46 |
MS.gene055363 | MS.gene73273 | 0.800577 | 1.35E-48 | -1.69E-46 |
MS.gene055466 | MS.gene73273 | 0.803685 | 3.10E-49 | -1.69E-46 |
MS.gene055608 | MS.gene73273 | 0.803219 | 3.87E-49 | -1.69E-46 |
MS.gene055816 | MS.gene73273 | -0.811569 | 6.56E-51 | -1.69E-46 |
MS.gene055926 | MS.gene73273 | 0.809527 | 1.81E-50 | -1.69E-46 |
MS.gene05604 | MS.gene73273 | 0.818865 | 1.57E-52 | -1.69E-46 |
MS.gene056400 | MS.gene73273 | 0.804924 | 1.71E-49 | -1.69E-46 |
MS.gene056875 | MS.gene73273 | 0.816844 | 4.49E-52 | -1.69E-46 |
MS.gene057469 | MS.gene73273 | 0.840832 | 6.86E-58 | -1.69E-46 |
MS.gene057665 | MS.gene73273 | 0.830673 | 2.57E-55 | -1.69E-46 |
MS.gene058636 | MS.gene73273 | 0.822042 | 2.93E-53 | -1.69E-46 |
MS.gene058792 | MS.gene73273 | 0.833339 | 5.64E-56 | -1.69E-46 |
MS.gene058851 | MS.gene73273 | 0.81123 | 7.77E-51 | -1.69E-46 |
MS.gene059128 | MS.gene73273 | 0.817237 | 3.66E-52 | -1.69E-46 |
MS.gene059249 | MS.gene73273 | 0.806793 | 6.92E-50 | -1.69E-46 |
MS.gene059664 | MS.gene73273 | 0.803911 | 2.78E-49 | -1.69E-46 |
MS.gene059713 | MS.gene73273 | 0.800507 | 1.40E-48 | -1.69E-46 |
MS.gene060137 | MS.gene73273 | -0.827719 | 1.34E-54 | -1.69E-46 |
MS.gene060322 | MS.gene73273 | 0.826588 | 2.50E-54 | -1.69E-46 |
MS.gene060404 | MS.gene73273 | 0.814169 | 1.77E-51 | -1.69E-46 |
MS.gene060480 | MS.gene73273 | 0.803083 | 4.13E-49 | -1.69E-46 |
MS.gene06052 | MS.gene73273 | 0.826475 | 2.66E-54 | -1.69E-46 |
MS.gene060683 | MS.gene73273 | 0.813682 | 2.26E-51 | -1.69E-46 |
MS.gene060685 | MS.gene73273 | 0.813137 | 2.98E-51 | -1.69E-46 |
MS.gene060802 | MS.gene73273 | 0.826635 | 2.43E-54 | -1.69E-46 |
MS.gene060803 | MS.gene73273 | 0.835627 | 1.50E-56 | -1.69E-46 |
MS.gene060998 | MS.gene73273 | 0.834826 | 2.39E-56 | -1.69E-46 |
MS.gene061040 | MS.gene73273 | -0.81536 | 9.62E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73273.t1 | MTR_4g019080 | 98.016 | 252 | 5 | 0 | 1 | 252 | 99 | 350 | 0.0 | 508 |
MS.gene73273.t1 | MTR_7g066210 | 49.057 | 265 | 99 | 9 | 6 | 252 | 106 | 352 | 1.46e-73 | 228 |
MS.gene73273.t1 | MTR_7g011345 | 85.000 | 80 | 12 | 0 | 154 | 233 | 1 | 80 | 3.38e-42 | 139 |
MS.gene73273.t1 | MTR_3g069910 | 34.270 | 178 | 106 | 3 | 70 | 243 | 166 | 336 | 2.12e-20 | 89.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73273.t1 | AT5G01090 | 38.340 | 253 | 133 | 9 | 7 | 246 | 109 | 351 | 7.34e-45 | 154 |
MS.gene73273.t1 | AT3G09190 | 34.711 | 242 | 141 | 9 | 1 | 229 | 97 | 334 | 5.13e-32 | 120 |
MS.gene73273.t1 | AT3G09035 | 38.298 | 235 | 124 | 8 | 7 | 229 | 109 | 334 | 1.11e-30 | 116 |
MS.gene73273.t1 | AT3G54080 | 28.977 | 176 | 116 | 4 | 69 | 239 | 163 | 334 | 3.74e-16 | 77.0 |
MS.gene73273.t1 | AT3G53810 | 32.335 | 167 | 90 | 7 | 6 | 151 | 104 | 268 | 2.66e-11 | 63.5 |
Find 39 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAAGCTACTTTACAAATT+TGG | 0.178240 | 4.1:-79137381 | MS.gene73273:CDS |
GTTCTTGCTGCAATGATATT+TGG | 0.190612 | 4.1:-79137011 | MS.gene73273:CDS |
CTTTATTTGTGGACAATCTT+TGG | 0.296212 | 4.1:-79136954 | MS.gene73273:CDS |
AATGGTGTTAAAAGTGTTAA+AGG | 0.299364 | 4.1:-79137536 | MS.gene73273:CDS |
TGTTGAGTTTGGTGGTTATA+AGG | 0.316166 | 4.1:-79137444 | MS.gene73273:CDS |
GTGGTGAAAAGTTGCATACT+TGG | 0.363123 | 4.1:-79137349 | MS.gene73273:CDS |
CATTCACTGTGCTTTATTTG+TGG | 0.378610 | 4.1:-79136965 | MS.gene73273:CDS |
GAAGGTATTAGTGTTGAGTT+TGG | 0.387797 | 4.1:-79137455 | MS.gene73273:CDS |
GGTTGCATAGAACATCCTTC+TGG | 0.388793 | 4.1:+79136909 | None:intergenic |
TTCAATATCAATGGAAAATG+AGG | 0.394385 | 4.1:-79137585 | None:intergenic |
ATTCATGGAGCTTTGTTATG+AGG | 0.423293 | 4.1:-79137157 | MS.gene73273:CDS |
TTCCTATACTCAACATCTAA+AGG | 0.425116 | 4.1:+79136888 | None:intergenic |
AAGGAGGAAGAAATGTTTGT+TGG | 0.425503 | 4.1:-79137215 | MS.gene73273:CDS |
TGACATATCTAATGTCTTGA+AGG | 0.441160 | 4.1:-79137234 | MS.gene73273:CDS |
GCTGCAATGATATTTGGTAC+TGG | 0.447642 | 4.1:-79137005 | MS.gene73273:CDS |
ATGATATTTGGTACTGGTTG+TGG | 0.463600 | 4.1:-79136999 | MS.gene73273:CDS |
GTTGTAGATAATAAAACCAT+TGG | 0.483802 | 4.1:-79136855 | MS.gene73273:CDS |
ACATGGAAATTCAAAGCCAT+TGG | 0.487541 | 4.1:-79137279 | MS.gene73273:CDS |
TTGATTATGAAGCAAGTTCA+AGG | 0.491101 | 4.1:-79137325 | MS.gene73273:CDS |
AACCTTTAGATGTTGAGTAT+AGG | 0.496316 | 4.1:-79136890 | MS.gene73273:CDS |
GGTTGTTAAACCAAAGGAAA+AGG | 0.497433 | 4.1:-79137060 | MS.gene73273:CDS |
TGCCATAGCAATGGATCCAA+TGG | 0.525534 | 4.1:+79137263 | None:intergenic |
GATAATAAAACCATTGGAGA+TGG | 0.530127 | 4.1:-79136849 | MS.gene73273:CDS |
TTCAATGGTTGTTAAACCAA+AGG | 0.530255 | 4.1:-79137066 | MS.gene73273:CDS |
CTACTTATTACCATCTCCAA+TGG | 0.535555 | 4.1:+79136839 | None:intergenic |
GAGTTTGGTGGTTATAAGGA+TGG | 0.543126 | 4.1:-79137440 | MS.gene73273:CDS |
GAAGTGAGGTTGAGTAAACA+TGG | 0.554505 | 4.1:-79137296 | MS.gene73273:CDS |
GGTATTAGTGTTGAGTTTGG+TGG | 0.561452 | 4.1:-79137452 | MS.gene73273:CDS |
TCAATATCAATGGAAAATGA+GGG | 0.570391 | 4.1:-79137584 | None:intergenic |
ACAGAAACATTAGGATCAAG+TGG | 0.578057 | 4.1:+79137104 | None:intergenic |
AGCCATTGGATCCATTGCTA+TGG | 0.592130 | 4.1:-79137265 | MS.gene73273:CDS |
GTTCAAGGAGGTTAGAAGTG+AGG | 0.608852 | 4.1:-79137310 | MS.gene73273:CDS |
CGTGGTGCAGTTGTTCCAGA+AGG | 0.612769 | 4.1:-79136924 | MS.gene73273:CDS |
CATATCTAATGTCTTGAAGG+AGG | 0.626720 | 4.1:-79137231 | MS.gene73273:CDS |
ATATCAATGGAAAATGAGGG+TGG | 0.655031 | 4.1:-79137581 | None:intergenic |
GGCTCTGAATGCATTGAATG+TGG | 0.679936 | 4.1:+79137125 | None:intergenic |
TCTGAATGCATTGAATGTGG+TGG | 0.691560 | 4.1:+79137128 | None:intergenic |
ACAATCTTTGGCAATAAACG+TGG | 0.699558 | 4.1:-79136942 | MS.gene73273:CDS |
ATTATGAAGCAAGTTCAAGG+AGG | 0.716891 | 4.1:-79137322 | MS.gene73273:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGAAAAATAATGATTTTGA+AGG | - | chr4.1:79136941-79136960 | MS.gene73273:CDS | 15.0% |
!!! | TTTTTAATAAAAGTTCATCT+GGG | - | chr4.1:79136906-79136925 | MS.gene73273:CDS | 15.0% |
!!! | AATGAGATTTTGATTAGAAA+TGG | - | chr4.1:79137001-79137020 | MS.gene73273:CDS | 20.0% |
!!! | ATAATGTTTTTCTGTATTCA+TGG | - | chr4.1:79137242-79137261 | MS.gene73273:CDS | 20.0% |
!!! | GTTTTTAATAAAAGTTCATC+TGG | - | chr4.1:79136905-79136924 | MS.gene73273:CDS | 20.0% |
! | GTTGTAGATAATAAAACCAT+TGG | - | chr4.1:79137559-79137578 | MS.gene73273:CDS | 25.0% |
! | TAAAAAGAGTGAAACTTCAA+TGG | - | chr4.1:79137333-79137352 | MS.gene73273:CDS | 25.0% |
!! | CTCTTTTTAACAGAAACATT+AGG | + | chr4.1:79137322-79137341 | None:intergenic | 25.0% |
!! | TGAAAGCTACTTTACAAATT+TGG | - | chr4.1:79137033-79137052 | MS.gene73273:CDS | 25.0% |
!! | TTAACACTTTTAACACCATT+TGG | + | chr4.1:79136878-79136897 | None:intergenic | 25.0% |
!!! | AATGGTGTTAAAAGTGTTAA+AGG | - | chr4.1:79136878-79136897 | MS.gene73273:CDS | 25.0% |
AACCTTTAGATGTTGAGTAT+AGG | - | chr4.1:79137524-79137543 | MS.gene73273:CDS | 30.0% | |
ACAAATTTGGCACTAAAAAG+TGG | - | chr4.1:79137046-79137065 | MS.gene73273:CDS | 30.0% | |
GATAATAAAACCATTGGAGA+TGG | - | chr4.1:79137565-79137584 | MS.gene73273:CDS | 30.0% | |
TGACATATCTAATGTCTTGA+AGG | - | chr4.1:79137180-79137199 | MS.gene73273:CDS | 30.0% | |
TTCAATGGTTGTTAAACCAA+AGG | - | chr4.1:79137348-79137367 | MS.gene73273:CDS | 30.0% | |
TTCCTATACTCAACATCTAA+AGG | + | chr4.1:79137529-79137548 | None:intergenic | 30.0% | |
TTGATTATGAAGCAAGTTCA+AGG | - | chr4.1:79137089-79137108 | MS.gene73273:CDS | 30.0% | |
! | CTTTATTTGTGGACAATCTT+TGG | - | chr4.1:79137460-79137479 | MS.gene73273:CDS | 30.0% |
!! | GCTTTTGTTATGATTCCAAA+TGG | - | chr4.1:79136860-79136879 | MS.gene73273:CDS | 30.0% |
!!! | GTTGGTTTTAGTCATGTAAA+GGG | - | chr4.1:79137217-79137236 | MS.gene73273:CDS | 30.0% |
!!! | TGTTGGTTTTAGTCATGTAA+AGG | - | chr4.1:79137216-79137235 | MS.gene73273:CDS | 30.0% |
AAGGAGGAAGAAATGTTTGT+TGG | - | chr4.1:79137199-79137218 | MS.gene73273:CDS | 35.0% | |
ACAATCTTTGGCAATAAACG+TGG | - | chr4.1:79137472-79137491 | MS.gene73273:CDS | 35.0% | |
ACAGAAACATTAGGATCAAG+TGG | + | chr4.1:79137313-79137332 | None:intergenic | 35.0% | |
ACATGGAAATTCAAAGCCAT+TGG | - | chr4.1:79137135-79137154 | MS.gene73273:CDS | 35.0% | |
ATTATGAAGCAAGTTCAAGG+AGG | - | chr4.1:79137092-79137111 | MS.gene73273:CDS | 35.0% | |
CATATCTAATGTCTTGAAGG+AGG | - | chr4.1:79137183-79137202 | MS.gene73273:CDS | 35.0% | |
CTACTTATTACCATCTCCAA+TGG | + | chr4.1:79137578-79137597 | None:intergenic | 35.0% | |
GGTTGTTAAACCAAAGGAAA+AGG | - | chr4.1:79137354-79137373 | MS.gene73273:CDS | 35.0% | |
GTTCTTGCTGCAATGATATT+TGG | - | chr4.1:79137403-79137422 | MS.gene73273:CDS | 35.0% | |
! | TCAATTTTGTGCCATAGCAA+TGG | + | chr4.1:79137163-79137182 | None:intergenic | 35.0% |
! | TGTTGAGTTTGGTGGTTATA+AGG | - | chr4.1:79136970-79136989 | MS.gene73273:CDS | 35.0% |
! | TTCTTCTTTGCCTTTTCCTT+TGG | + | chr4.1:79137367-79137386 | None:intergenic | 35.0% |
!! | ATGATATTTGGTACTGGTTG+TGG | - | chr4.1:79137415-79137434 | MS.gene73273:CDS | 35.0% |
!! | ATTCATGGAGCTTTGTTATG+AGG | - | chr4.1:79137257-79137276 | MS.gene73273:CDS | 35.0% |
!! | CATTCACTGTGCTTTATTTG+TGG | - | chr4.1:79137449-79137468 | MS.gene73273:CDS | 35.0% |
!! | GAAGGTATTAGTGTTGAGTT+TGG | - | chr4.1:79136959-79136978 | MS.gene73273:CDS | 35.0% |
GAAGTGAGGTTGAGTAAACA+TGG | - | chr4.1:79137118-79137137 | MS.gene73273:CDS | 40.0% | |
GCTGCAATGATATTTGGTAC+TGG | - | chr4.1:79137409-79137428 | MS.gene73273:CDS | 40.0% | |
GTGGTGAAAAGTTGCATACT+TGG | - | chr4.1:79137065-79137084 | MS.gene73273:CDS | 40.0% | |
TCTGAATGCATTGAATGTGG+TGG | + | chr4.1:79137289-79137308 | None:intergenic | 40.0% | |
! | AGTTCATCTGGGTTTTCTCT+TGG | - | chr4.1:79136917-79136936 | MS.gene73273:CDS | 40.0% |
! | GAGTTTGGTGGTTATAAGGA+TGG | - | chr4.1:79136974-79136993 | MS.gene73273:CDS | 40.0% |
! | GGTATTAGTGTTGAGTTTGG+TGG | - | chr4.1:79136962-79136981 | MS.gene73273:CDS | 40.0% |
AGCCATTGGATCCATTGCTA+TGG | - | chr4.1:79137149-79137168 | MS.gene73273:CDS | 45.0% | |
GGTTGCATAGAACATCCTTC+TGG | + | chr4.1:79137508-79137527 | None:intergenic | 45.0% | |
GTTCAAGGAGGTTAGAAGTG+AGG | - | chr4.1:79137104-79137123 | MS.gene73273:CDS | 45.0% | |
TGCCATAGCAATGGATCCAA+TGG | + | chr4.1:79137154-79137173 | None:intergenic | 45.0% | |
!! | GGCTCTGAATGCATTGAATG+TGG | + | chr4.1:79137292-79137311 | None:intergenic | 45.0% |
CGTGGTGCAGTTGTTCCAGA+AGG | - | chr4.1:79137490-79137509 | MS.gene73273:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 79136839 | 79137597 | 79136839 | ID=MS.gene73273 |
chr4.1 | mRNA | 79136839 | 79137597 | 79136839 | ID=MS.gene73273.t1;Parent=MS.gene73273 |
chr4.1 | exon | 79136839 | 79137597 | 79136839 | ID=MS.gene73273.t1.exon1;Parent=MS.gene73273.t1 |
chr4.1 | CDS | 79136839 | 79137597 | 79136839 | ID=cds.MS.gene73273.t1;Parent=MS.gene73273.t1 |
Gene Sequence |
Protein sequence |