AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80845

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80845.t1 MTR_6g084450 99.569 232 1 0 1 232 1 232 4.06e-174 478
MS.gene80845.t1 MTR_4g060540 91.379 232 20 0 1 232 1 232 2.43e-164 453
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80845.t1 AT1G56450 83.260 227 38 0 6 232 20 246 2.66e-147 410

Find 67 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTCATGGCTGCTGATA+TGG 0.179124 6.2:-82895698 MS.gene80845:CDS
TGGGGAAATAAGTGACTTTC+AGG 0.197112 6.2:-82895175 MS.gene80845:CDS
TGTTCTTGGTGGTGTTAAAA+AGG 0.203874 6.2:-82894754 MS.gene80845:CDS
TTGTGGAACTCACTTGTTCT+TGG 0.291580 6.2:-82894768 MS.gene80845:CDS
ATTGGAAAGCACTCCCTTCT+TGG 0.302569 6.2:-82895204 MS.gene80845:CDS
GTCTGCTGTGAACAAGATTC+AGG 0.323330 6.2:-82894461 MS.gene80845:intron
CATCCCACATGTTGTCAATA+AGG 0.327041 6.2:+82894871 None:intergenic
GTGGGATGATGGGAACTCTT+TGG 0.337980 6.2:-82894856 MS.gene80845:CDS
CTTATCCAGGTTAGCATGAT+TGG 0.338514 6.2:-82894634 MS.gene80845:intron
CATTCTCTTTGAAAACATAC+TGG 0.339670 6.2:-82892803 MS.gene80845:CDS
TAACTCGGGTGATGTATAAT+AGG 0.358277 6.2:-82894809 MS.gene80845:CDS
GAAGACAACCATGTGGCAAC+TGG 0.364317 6.2:-82894601 MS.gene80845:CDS
TGGGATGATGGGAACTCTTT+GGG 0.367264 6.2:-82894855 MS.gene80845:CDS
GTTGAGCGTTTGAAGCCTAT+TGG 0.368912 6.2:-82895222 MS.gene80845:CDS
AACTAATTCACAGGTTCATA+TGG 0.374338 6.2:-82895267 MS.gene80845:intron
TTCCACTCATCACGGAGAAT+TGG 0.375307 6.2:+82894556 None:intergenic
AAATAGTTGTGGACCTCCTT+AGG 0.402257 6.2:+82894831 None:intergenic
AACCATGTGGCAACTGGGCT+TGG 0.423568 6.2:-82894595 MS.gene80845:CDS
AGAATACATACAGAGTTCTC+TGG 0.424755 6.2:+82895887 None:intergenic
CACTCCCTTCTTGGTGCTAG+TGG 0.427822 6.2:-82895195 MS.gene80845:CDS
TCTAGGTACCCATACGTAAC+TGG 0.433194 6.2:-82895754 MS.gene80845:intron
GAAAACATACTGGGAGTTCT+CGG 0.436500 6.2:-82892793 MS.gene80845:CDS
ATTCTCATGGCTGCTGATAT+GGG 0.437064 6.2:-82895697 MS.gene80845:CDS
AGAAGGGAGTGCTTTCCAAT+AGG 0.444361 6.2:+82895207 None:intergenic
CAGTTGGTGCTGAAGGTTCA+TGG 0.451533 6.2:-82892755 MS.gene80845:CDS
ACCAACTGTTGGATTCTTGA+AGG 0.455188 6.2:+82892770 None:intergenic
TGGAACTCACTTGTTCTTGG+TGG 0.462785 6.2:-82894765 MS.gene80845:CDS
TGGGAACTCTTTGGGACCTA+AGG 0.494345 6.2:-82894847 MS.gene80845:CDS
ATTGACAACATGTGGGATGA+TGG 0.498069 6.2:-82894867 MS.gene80845:CDS
ATATCTAAAATTACCGAAGA+AGG 0.520773 6.2:-82892843 MS.gene80845:CDS
GAAAACTTGACATTTGAAGA+AGG 0.522330 6.2:-82894532 MS.gene80845:CDS
AATCCAACAGTTGGTGCTGA+AGG 0.522601 6.2:-82892762 MS.gene80845:CDS
GTAAACAGTAGCACCTTCTT+CGG 0.525664 6.2:+82892830 None:intergenic
TTTCCCCACTAGCACCAAGA+AGG 0.526251 6.2:+82895190 None:intergenic
GAACCTTCAGCACCAACTGT+TGG 0.532387 6.2:+82892759 None:intergenic
GTTGCTATCAAATACAAAGA+TGG 0.535140 6.2:-82895721 MS.gene80845:CDS
ACTCCCTTCTTGGTGCTAGT+GGG 0.536638 6.2:-82895194 MS.gene80845:CDS
ACGGAGGATCCAGTTACGTA+TGG 0.544818 6.2:+82895745 None:intergenic
CTCCCTTCTTGGTGCTAGTG+GGG 0.554016 6.2:-82895193 MS.gene80845:CDS
TTCCCCACTAGCACCAAGAA+GGG 0.561183 6.2:+82895191 None:intergenic
GAATACATACAGAGTTCTCT+GGG 0.564352 6.2:+82895888 None:intergenic
GCCTTCAAGAATCCAACAGT+TGG 0.564781 6.2:-82892771 MS.gene80845:CDS
TTGACAACATGTGGGATGAT+GGG 0.571070 6.2:-82894866 MS.gene80845:CDS
ATACAAAGATGGCATTCTCA+TGG 0.571569 6.2:-82895710 MS.gene80845:CDS
TTCCAAGCCCAGTTGCCACA+TGG 0.580626 6.2:+82894593 None:intergenic
GCAGCCTTATTGACAACATG+TGG 0.586058 6.2:-82894875 MS.gene80845:intron
AGGTCCACAACTATTTAACT+CGG 0.589584 6.2:-82894824 MS.gene80845:CDS
GGCCAATTCTCCGTGATGAG+TGG 0.593615 6.2:-82894558 MS.gene80845:CDS
AAGACAACCATGTGGCAACT+GGG 0.606831 6.2:-82894600 MS.gene80845:CDS
GAACTCTTTGGGACCTAAGG+AGG 0.607188 6.2:-82894844 MS.gene80845:CDS
GGCTTGGAAATCATCTTGCT+AGG 0.608634 6.2:-82894579 MS.gene80845:CDS
TTACTCACATGAGCTCATCA+AGG 0.609092 6.2:+82895139 None:intergenic
ATTCTCTTTGAAAACATACT+GGG 0.610546 6.2:-82892802 MS.gene80845:CDS
TTTGTATTTGATAGCAACGA+CGG 0.611101 6.2:+82895726 None:intergenic
TGTTCACAGCAGACCTATCA+CGG 0.621004 6.2:+82894470 None:intergenic
TCACCCGAGTTAAATAGTTG+TGG 0.633695 6.2:+82894820 None:intergenic
CGGAGGATCCAGTTACGTAT+GGG 0.635103 6.2:+82895746 None:intergenic
CTCATGGCTGCTGATATGGG+AGG 0.637244 6.2:-82895694 MS.gene80845:intron
AAGTAAGGCATACCGTGCCA+AGG 0.647059 6.2:+82894721 None:intergenic
GGTCCACAACTATTTAACTC+GGG 0.657570 6.2:-82894823 MS.gene80845:CDS
GCAACAAGTTCGATCCATTG+TGG 0.659189 6.2:-82894785 MS.gene80845:CDS
GGGGCAGAAGTACCTTGGCA+CGG 0.670563 6.2:-82894733 MS.gene80845:intron
AGAACAAGTGAGTTCCACAA+TGG 0.678967 6.2:+82894771 None:intergenic
CAGCCTTATTGACAACATGT+GGG 0.687070 6.2:-82894874 MS.gene80845:CDS
GTATTTGATAGCAACGACGG+AGG 0.702152 6.2:+82895729 None:intergenic
TAATTACGAAGACAACCATG+TGG 0.788585 6.2:-82894608 MS.gene80845:CDS
GTTCATATGGATCTACACTG+AGG 0.793582 6.2:-82895254 MS.gene80845:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATTAATTAAATATGGA+AGG + chr6.2:82894800-82894819 None:intergenic 15.0%
!! TTGAAAGATAATGTAAAATA+TGG + chr6.2:82894447-82894466 None:intergenic 15.0%
!!! ATAAAATACATTTGAAATGA+AGG + chr6.2:82893155-82893174 None:intergenic 15.0%
!!! ATTTATGAATATTTTTCCTT+TGG + chr6.2:82894415-82894434 None:intergenic 15.0%
!!! CTTCCATATTTAATTAATTT+TGG - chr6.2:82894798-82894817 MS.gene80845:CDS 15.0%
!!! TTTATGAATATTTTTCCTTT+GGG + chr6.2:82894414-82894433 None:intergenic 15.0%
!! AACAAATCATCATTAAGTTT+AGG + chr6.2:82895687-82895706 None:intergenic 20.0%
!! AAGAACATTAATAATTGAAG+AGG + chr6.2:82892809-82892828 None:intergenic 20.0%
!! ACAAATCATCATTAAGTTTA+GGG + chr6.2:82895686-82895705 None:intergenic 20.0%
!! AGAAAACATATATAGAATGA+AGG + chr6.2:82895213-82895232 None:intergenic 20.0%
!! AGAACATTAATAATTGAAGA+GGG + chr6.2:82892808-82892827 None:intergenic 20.0%
!! AGTAAATTCAGGATTTATAT+AGG - chr6.2:82895088-82895107 MS.gene80845:intron 20.0%
!! ATTAATTAAATATGGAAGGA+AGG + chr6.2:82894796-82894815 None:intergenic 20.0%
!! CAAATAAGTGAAGTAAAAAT+GGG - chr6.2:82893597-82893616 MS.gene80845:intron 20.0%
!! CAGCCAAAATTAATTAAATA+TGG + chr6.2:82894804-82894823 None:intergenic 20.0%
!! TCAAATAAGTGAAGTAAAAA+TGG - chr6.2:82893596-82893615 MS.gene80845:intron 20.0%
!! TTATACATTTAAGAATTGTG+TGG - chr6.2:82894633-82894652 MS.gene80845:intron 20.0%
!!! AAAGTTATTTGAGATAGAAA+GGG - chr6.2:82895058-82895077 MS.gene80845:intron 20.0%
!!! AGTTGTAATATTTAAAGTCA+AGG + chr6.2:82893722-82893741 None:intergenic 20.0%
!!! ATGAAATTGAAACTTTTACA+CGG + chr6.2:82895553-82895572 None:intergenic 20.0%
!!! ATTTATATAGGTTGATTTGT+CGG - chr6.2:82895100-82895119 MS.gene80845:intron 20.0%
!!! CATATTTAATTAATTTTGGC+TGG - chr6.2:82894802-82894821 MS.gene80845:CDS 20.0%
!!! CTTTTTTCTTAAAAAGTTAC+AGG + chr6.2:82893220-82893239 None:intergenic 20.0%
!!! GTTGTAATATTTAAAGTCAA+GGG + chr6.2:82893721-82893740 None:intergenic 20.0%
!!! TGATTATTTTGGATTATGAA+TGG - chr6.2:82894483-82894502 MS.gene80845:CDS 20.0%
!!! TGTTTGAAATGTAGATAAAT+AGG + chr6.2:82893670-82893689 None:intergenic 20.0%
! AAACACAACAAACAAAAATC+AGG + chr6.2:82893999-82894018 None:intergenic 25.0%
! AAACTTCGATAAGTTGTAAA+TGG + chr6.2:82894282-82894301 None:intergenic 25.0%
! AAAGAAGTAAAAACTGAACA+GGG - chr6.2:82895013-82895032 MS.gene80845:intron 25.0%
! AACTTCGATAAGTTGTAAAT+GGG + chr6.2:82894281-82894300 None:intergenic 25.0%
! AATGGGTGTGATTAATTAAA+TGG - chr6.2:82893614-82893633 MS.gene80845:intron 25.0%
! AATTATCTTTCCTTCTATTG+TGG - chr6.2:82893116-82893135 MS.gene80845:intron 25.0%
! GTGTAAAAGTTTCAATTTCA+TGG - chr6.2:82895552-82895571 MS.gene80845:intron 25.0%
! TTAGTATTCCAAATCATTCA+TGG + chr6.2:82895324-82895343 None:intergenic 25.0%
! TTCTAACCGAAAAATTAATG+TGG + chr6.2:82894596-82894615 None:intergenic 25.0%
! TTCTATCCATCAATTATCAT+TGG + chr6.2:82893370-82893389 None:intergenic 25.0%
! TTGAAGTGAAATCATTTGTA+TGG - chr6.2:82894656-82894675 MS.gene80845:intron 25.0%
!! AATACAATCTCCTTTTAGAT+AGG - chr6.2:82895250-82895269 MS.gene80845:CDS 25.0%
!! ATATCTAAAATTACCGAAGA+AGG - chr6.2:82895816-82895835 MS.gene80845:intron 25.0%
!! ATTCTCTTTGAAAACATACT+GGG - chr6.2:82895857-82895876 MS.gene80845:intron 25.0%
!! GAAAGTTATTTGAGATAGAA+AGG - chr6.2:82895057-82895076 MS.gene80845:intron 25.0%
!! TTTTCTTAAAAAGTTACAGG+AGG + chr6.2:82893217-82893236 None:intergenic 25.0%
!!! ATAAATGTTGTTTCCTTACA+AGG - chr6.2:82893250-82893269 MS.gene80845:intron 25.0%
!!! GTTCTTTTGATTCAAGTTTA+AGG - chr6.2:82892823-82892842 MS.gene80845:CDS 25.0%
!!! TAAATGTTGTTTCCTTACAA+GGG - chr6.2:82893251-82893270 MS.gene80845:intron 25.0%
!!! TGCTCAAGTTTTGATTATTT+TGG - chr6.2:82894472-82894491 MS.gene80845:CDS 25.0%
AACAAGTAAAATGAAGCTGA+TGG + chr6.2:82893644-82893663 None:intergenic 30.0%
AACTAATTCACAGGTTCATA+TGG - chr6.2:82893392-82893411 MS.gene80845:intron 30.0%
AAGAAGTAAAAACTGAACAG+GGG - chr6.2:82895014-82895033 MS.gene80845:intron 30.0%
ACAACAAACAAAAATCAGGA+AGG + chr6.2:82893995-82894014 None:intergenic 30.0%
ACATTAATAATTGAAGAGGG+AGG + chr6.2:82892805-82892824 None:intergenic 30.0%
ACGAGAGTAAATGTCAAAAT+TGG - chr6.2:82894954-82894973 MS.gene80845:intron 30.0%
ACTTCGATAAGTTGTAAATG+GGG + chr6.2:82894280-82894299 None:intergenic 30.0%
AGGGAGAAAATAGTAAATTC+AGG - chr6.2:82895077-82895096 MS.gene80845:intron 30.0%
ATTAAATATGGAAGGAAGGT+AGG + chr6.2:82894792-82894811 None:intergenic 30.0%
CAAAATCTAACCACAATAGA+AGG + chr6.2:82893129-82893148 None:intergenic 30.0%
CAAAGAAGTAAAAACTGAAC+AGG - chr6.2:82895012-82895031 MS.gene80845:intron 30.0%
CGAGAGTAAATGTCAAAATT+GGG - chr6.2:82894955-82894974 MS.gene80845:intron 30.0%
GAAAACTTGACATTTGAAGA+AGG - chr6.2:82894127-82894146 MS.gene80845:intron 30.0%
GAGAGTAAATGTCAAAATTG+GGG - chr6.2:82894956-82894975 MS.gene80845:intron 30.0%
GATAGAATGAACTAATTCAC+AGG - chr6.2:82893383-82893402 MS.gene80845:intron 30.0%
GTAATGCCAATGATAATTGA+TGG - chr6.2:82893361-82893380 MS.gene80845:intron 30.0%
GTTCTATATATAGCTGATAG+TGG - chr6.2:82894365-82894384 MS.gene80845:intron 30.0%
GTTGCTATCAAATACAAAGA+TGG - chr6.2:82892938-82892957 MS.gene80845:intron 30.0%
TAAAAGAGTGATCAAGAAGA+AGG + chr6.2:82893076-82893095 None:intergenic 30.0%
TAGGAAAGTTCCTATCTAAA+AGG + chr6.2:82895263-82895282 None:intergenic 30.0%
TCTGATCATGTATATGTGTT+AGG - chr6.2:82895507-82895526 MS.gene80845:intron 30.0%
! AGGAAGCCACATTAATTTTT+CGG - chr6.2:82894587-82894606 MS.gene80845:CDS 30.0%
! ATGTTTTCAAAGAGAATGGT+GGG + chr6.2:82895854-82895873 None:intergenic 30.0%
! ATTTGTTGAATATGTTGCGT+CGG - chr6.2:82895637-82895656 MS.gene80845:intron 30.0%
! CAGTATGTTTTCAAAGAGAA+TGG + chr6.2:82895858-82895877 None:intergenic 30.0%
! CATTCTCTTTGAAAACATAC+TGG - chr6.2:82895856-82895875 MS.gene80845:intron 30.0%
! CTGTTCAGTTTTTACTTCTT+TGG + chr6.2:82895014-82895033 None:intergenic 30.0%
! TATGTTTTCAAAGAGAATGG+TGG + chr6.2:82895855-82895874 None:intergenic 30.0%
! TGATCACTCTTTTACTTTGT+TGG - chr6.2:82893082-82893101 MS.gene80845:intron 30.0%
! TTTGTATTTGATAGCAACGA+CGG + chr6.2:82892936-82892955 None:intergenic 30.0%
!! AATTTTGACATTTACTCTCG+TGG + chr6.2:82894955-82894974 None:intergenic 30.0%
!! TGGATTTGCTTTCATTTTTC+TGG - chr6.2:82895133-82895152 MS.gene80845:intron 30.0%
!! TTGCTTATTTTCTTTGCTCT+AGG - chr6.2:82892888-82892907 MS.gene80845:intron 30.0%
!!! TGCTTTATTTTCTGCTACTA+AGG + chr6.2:82894884-82894903 None:intergenic 30.0%
AGAATACATACAGAGTTCTC+TGG + chr6.2:82892775-82892794 None:intergenic 35.0%
AGGTAATAACACCTAGATGA+TGG - chr6.2:82895448-82895467 MS.gene80845:intron 35.0%
AGGTCCACAACTATTTAACT+CGG - chr6.2:82893835-82893854 MS.gene80845:intron 35.0%
ATAAGTTGTAAATGGGGAGA+GGG + chr6.2:82894274-82894293 None:intergenic 35.0%
ATACAAAGATGGCATTCTCA+TGG - chr6.2:82892949-82892968 MS.gene80845:intron 35.0%
ATTGACCACCTAAGAAATGA+AGG - chr6.2:82894853-82894872 MS.gene80845:CDS 35.0%
CTGAATGACAAGACAAAGTA+AGG + chr6.2:82893956-82893975 None:intergenic 35.0%
GAATACATACAGAGTTCTCT+GGG + chr6.2:82892774-82892793 None:intergenic 35.0%
GATGTGTAACATCAATACAC+TGG - chr6.2:82895353-82895372 MS.gene80845:intron 35.0%
TAACTCGGGTGATGTATAAT+AGG - chr6.2:82893850-82893869 MS.gene80845:intron 35.0%
TAATTACGAAGACAACCATG+TGG - chr6.2:82894051-82894070 MS.gene80845:intron 35.0%
TCAAATAACTTTCCCTCCAT+GGG + chr6.2:82895050-82895069 None:intergenic 35.0%
TGTGTTTGTGTATCTTATCC+AGG - chr6.2:82894012-82894031 MS.gene80845:intron 35.0%
TTAAAAAGTTACAGGAGGAC+TGG + chr6.2:82893212-82893231 None:intergenic 35.0%
TTGCTTATGACCCAATTAAG+CGG - chr6.2:82895393-82895412 MS.gene80845:intron 35.0%
TTTGTTGAATATGTTGCGTC+GGG - chr6.2:82895638-82895657 MS.gene80845:intron 35.0%
! AGTTTTCATTCCACTCATCA+CGG + chr6.2:82894114-82894133 None:intergenic 35.0%
!! CAGAAGAAAAGCACTAAAAC+TGG + chr6.2:82893277-82893296 None:intergenic 35.0%
!! GTTCTTGGTGGTGTTAAAAA+GGG - chr6.2:82893906-82893925 MS.gene80845:intron 35.0%
!! TGATGATTTGTTTCGTTCGT+TGG - chr6.2:82895695-82895714 MS.gene80845:CDS 35.0%
!! TGTTCTTGGTGGTGTTAAAA+AGG - chr6.2:82893905-82893924 MS.gene80845:intron 35.0%
!! TTCTTGGTGGTGTTAAAAAG+GGG - chr6.2:82893907-82893926 MS.gene80845:intron 35.0%
AAATAGTTGTGGACCTCCTT+AGG + chr6.2:82893831-82893850 None:intergenic 40.0%
AAGTAAAAACTGAACAGGGG+TGG - chr6.2:82895017-82895036 MS.gene80845:intron 40.0%
ACATGTTGTCAATAAGGCTG+CGG + chr6.2:82893785-82893804 None:intergenic 40.0%
ACCAACTGTTGGATTCTTGA+AGG + chr6.2:82895892-82895911 None:intergenic 40.0%
ACGCAGCAAGAAAATGAAAC+AGG + chr6.2:82894229-82894248 None:intergenic 40.0%
AGAACAAGTGAGTTCCACAA+TGG + chr6.2:82893891-82893910 None:intergenic 40.0%
AGAACTGTCTCGTAATTCAC+AGG + chr6.2:82895481-82895500 None:intergenic 40.0%
AGGAAACATCCTCATAACTC+TGG + chr6.2:82894772-82894791 None:intergenic 40.0%
AGGTAACATGTGATGTGAGT+TGG + chr6.2:82894715-82894734 None:intergenic 40.0%
AGTAAAAACTGAACAGGGGT+GGG - chr6.2:82895018-82895037 MS.gene80845:intron 40.0%
AGTTAACAGAGAGAGAGCTA+TGG + chr6.2:82893024-82893043 None:intergenic 40.0%
ATAATTGAAGAGGGAGGAAG+AGG + chr6.2:82892799-82892818 None:intergenic 40.0%
ATCTGAACGTGACATCCTTA+TGG - chr6.2:82894737-82894756 MS.gene80845:CDS 40.0%
ATTCTCATGGCTGCTGATAT+GGG - chr6.2:82892962-82892981 MS.gene80845:intron 40.0%
ATTGACAACATGTGGGATGA+TGG - chr6.2:82893792-82893811 MS.gene80845:intron 40.0%
CATCCCACATGTTGTCAATA+AGG + chr6.2:82893791-82893810 None:intergenic 40.0%
CCTCATAACTCTGGACTTAA+GGG + chr6.2:82894763-82894782 None:intergenic 40.0%
CTCAAATAACTTTCCCTCCA+TGG + chr6.2:82895051-82895070 None:intergenic 40.0%
CTTATCCAGGTTAGCATGAT+TGG - chr6.2:82894025-82894044 MS.gene80845:intron 40.0%
CTTTCCTATCATAGAGCCAT+TGG - chr6.2:82895275-82895294 MS.gene80845:intron 40.0%
GAAAACATACTGGGAGTTCT+CGG - chr6.2:82895866-82895885 MS.gene80845:intron 40.0%
GATAAGTTGTAAATGGGGAG+AGG + chr6.2:82894275-82894294 None:intergenic 40.0%
GGTCCACAACTATTTAACTC+GGG - chr6.2:82893836-82893855 MS.gene80845:intron 40.0%
GTAAACAGTAGCACCTTCTT+CGG + chr6.2:82895832-82895851 None:intergenic 40.0%
GTTCATATGGATCTACACTG+AGG - chr6.2:82893405-82893424 MS.gene80845:intron 40.0%
TAATTGAAGAGGGAGGAAGA+GGG + chr6.2:82892798-82892817 None:intergenic 40.0%
TCACCCGAGTTAAATAGTTG+TGG + chr6.2:82893842-82893861 None:intergenic 40.0%
TCCTCATAACTCTGGACTTA+AGG + chr6.2:82894764-82894783 None:intergenic 40.0%
TGGGGAAATAAGTGACTTTC+AGG - chr6.2:82893484-82893503 MS.gene80845:intron 40.0%
TGTACATGCTGTCACTGTTA+AGG - chr6.2:82894567-82894586 MS.gene80845:CDS 40.0%
TTACTCACATGAGCTCATCA+AGG + chr6.2:82893523-82893542 None:intergenic 40.0%
TTGACAACATGTGGGATGAT+GGG - chr6.2:82893793-82893812 MS.gene80845:intron 40.0%
TTGTGGAACTCACTTGTTCT+TGG - chr6.2:82893891-82893910 MS.gene80845:intron 40.0%
! CAAACCAATGGCTCTATGAT+AGG + chr6.2:82895282-82895301 None:intergenic 40.0%
! GCTTGCTACCATGAATGATT+TGG - chr6.2:82895313-82895332 MS.gene80845:intron 40.0%
! TGTCAAAATTGGGGCTTTGA+AGG - chr6.2:82894965-82894984 MS.gene80845:intron 40.0%
!! ATAGGTTGATTTGTCGGCAT+GGG - chr6.2:82895106-82895125 MS.gene80845:intron 40.0%
!! ATCATAGAGCCATTGGTTTG+TGG - chr6.2:82895282-82895301 MS.gene80845:intron 40.0%
!! CAGCCTTATTGACAACATGT+GGG - chr6.2:82893785-82893804 MS.gene80845:intron 40.0%
!! TATAGGTTGATTTGTCGGCA+TGG - chr6.2:82895105-82895124 MS.gene80845:intron 40.0%
AAGACAACCATGTGGCAACT+GGG - chr6.2:82894059-82894078 MS.gene80845:intron 45.0%
AATTAAGCGGCCGCAAAATC+TGG - chr6.2:82895406-82895425 MS.gene80845:intron 45.0%
ACAAACAAAACTCTCAGCCG+AGG + chr6.2:82895189-82895208 None:intergenic 45.0%
AGGATGTCACGTTCAGATCT+AGG + chr6.2:82894735-82894754 None:intergenic 45.0%
AGGCACAGCCTTCATTTCTT+AGG + chr6.2:82894864-82894883 None:intergenic 45.0%
CACAGCCTTCATTTCTTAGG+TGG + chr6.2:82894861-82894880 None:intergenic 45.0%
CACTAAAACTGGCCCTTGTA+AGG + chr6.2:82893266-82893285 None:intergenic 45.0%
CATTCTCATGGCTGCTGATA+TGG - chr6.2:82892961-82892980 MS.gene80845:intron 45.0%
CCCTTAAGTCCAGAGTTATG+AGG - chr6.2:82894760-82894779 MS.gene80845:CDS 45.0%
CTAGTGCAACCACAAACCAA+TGG + chr6.2:82895294-82895313 None:intergenic 45.0%
GCAACAAGTTCGATCCATTG+TGG - chr6.2:82893874-82893893 MS.gene80845:intron 45.0%
GCCTTCAAGAATCCAACAGT+TGG - chr6.2:82895888-82895907 MS.gene80845:intron 45.0%
GGCTTGGAAATCATCTTGCT+AGG - chr6.2:82894080-82894099 MS.gene80845:intron 45.0%
GTCTGCTGTGAACAAGATTC+AGG - chr6.2:82894198-82894217 MS.gene80845:intron 45.0%
TAACGCCAATCATGCTAACC+TGG + chr6.2:82894033-82894052 None:intergenic 45.0%
TCTAGGTACCCATACGTAAC+TGG - chr6.2:82892905-82892924 MS.gene80845:intron 45.0%
TGATCAACTAGCATGCCCAA+AGG - chr6.2:82894396-82894415 MS.gene80845:intron 45.0%
TGGAACTCACTTGTTCTTGG+TGG - chr6.2:82893894-82893913 MS.gene80845:intron 45.0%
TGGGCATGCTAGTTGATCAA+AGG + chr6.2:82894395-82894414 None:intergenic 45.0%
TGTTCACAGCAGACCTATCA+CGG + chr6.2:82894192-82894211 None:intergenic 45.0%
TTCCACTCATCACGGAGAAT+TGG + chr6.2:82894106-82894125 None:intergenic 45.0%
! AGATTTTGCGGCCGCTTAAT+TGG + chr6.2:82895407-82895426 None:intergenic 45.0%
! GAGTGCTTTTGTACCGTGAT+AGG - chr6.2:82894176-82894195 MS.gene80845:intron 45.0%
! GATTTTGCGGCCGCTTAATT+GGG + chr6.2:82895406-82895425 None:intergenic 45.0%
! GTATTTGATAGCAACGACGG+AGG + chr6.2:82892933-82892952 None:intergenic 45.0%
! GTTGAGCGTTTGAAGCCTAT+TGG - chr6.2:82893437-82893456 MS.gene80845:intron 45.0%
! TAGCCACTGACCAGATTTTG+CGG + chr6.2:82895419-82895438 None:intergenic 45.0%
!! AAAAAGGGGCAGAAGTACCT+TGG - chr6.2:82893921-82893940 MS.gene80845:intron 45.0%
!! AATCCAACAGTTGGTGCTGA+AGG - chr6.2:82895897-82895916 MS.gene80845:intron 45.0%
!! AGAAGGGAGTGCTTTCCAAT+AGG + chr6.2:82893455-82893474 None:intergenic 45.0%
!! ATTGGAAAGCACTCCCTTCT+TGG - chr6.2:82893455-82893474 MS.gene80845:intron 45.0%
!! GCAGCCTTATTGACAACATG+TGG - chr6.2:82893784-82893803 MS.gene80845:intron 45.0%
!! TGGGATGATGGGAACTCTTT+GGG - chr6.2:82893804-82893823 MS.gene80845:intron 45.0%
AAGTAAGGCATACCGTGCCA+AGG + chr6.2:82893941-82893960 None:intergenic 50.0%
ACGGAGGATCCAGTTACGTA+TGG + chr6.2:82892917-82892936 None:intergenic 50.0%
AGTTGTAAATGGGGAGAGGG+AGG + chr6.2:82894271-82894290 None:intergenic 50.0%
CACGGATGCTGAACAAGATG+AGG + chr6.2:82895535-82895554 None:intergenic 50.0%
CAGGCAAGCAACCATCATCT+AGG + chr6.2:82895462-82895481 None:intergenic 50.0%
CGGAGGATCCAGTTACGTAT+GGG + chr6.2:82892916-82892935 None:intergenic 50.0%
CTCTGGACTTAAGGGCCATA+AGG + chr6.2:82894755-82894774 None:intergenic 50.0%
GAACCTTCAGCACCAACTGT+TGG + chr6.2:82895903-82895922 None:intergenic 50.0%
GAAGACAACCATGTGGCAAC+TGG - chr6.2:82894058-82894077 MS.gene80845:intron 50.0%
GTCATTCAGTCCGACAGTTG+AGG - chr6.2:82893967-82893986 MS.gene80845:intron 50.0%
TTCCCCACTAGCACCAAGAA+GGG + chr6.2:82893471-82893490 None:intergenic 50.0%
TTTCCCCACTAGCACCAAGA+AGG + chr6.2:82893472-82893491 None:intergenic 50.0%
! GTCAGTGGCTAGTTACTGGA+AGG - chr6.2:82895428-82895447 MS.gene80845:intron 50.0%
! TCTGGTCAGTGGCTAGTTAC+TGG - chr6.2:82895424-82895443 MS.gene80845:intron 50.0%
! TTAAGTTTAGGGCGCAGTGC+AGG + chr6.2:82895675-82895694 None:intergenic 50.0%
!! ACTCCCTTCTTGGTGCTAGT+GGG - chr6.2:82893465-82893484 MS.gene80845:intron 50.0%
!! CAGGAAGGTACCTCAACTGT+CGG + chr6.2:82893980-82893999 None:intergenic 50.0%
!! CAGTTGGTGCTGAAGGTTCA+TGG - chr6.2:82895904-82895923 MS.gene80845:CDS 50.0%
!! GAACTCTTTGGGACCTAAGG+AGG - chr6.2:82893815-82893834 MS.gene80845:intron 50.0%
!! GTGGGATGATGGGAACTCTT+TGG - chr6.2:82893803-82893822 MS.gene80845:intron 50.0%
!! TGGGAACTCTTTGGGACCTA+AGG - chr6.2:82893812-82893831 MS.gene80845:intron 50.0%
AACCATGTGGCAACTGGGCT+TGG - chr6.2:82894064-82894083 MS.gene80845:intron 55.0%
CTCATGGCTGCTGATATGGG+AGG - chr6.2:82892965-82892984 MS.gene80845:intron 55.0%
GATTTGTCGGCATGGGAGTC+TGG - chr6.2:82895113-82895132 MS.gene80845:intron 55.0%
GGCCAATTCTCCGTGATGAG+TGG - chr6.2:82894101-82894120 MS.gene80845:intron 55.0%
TCAGCCGAGGAGAAACAGTC+TGG + chr6.2:82895176-82895195 None:intergenic 55.0%
TTCCAAGCCCAGTTGCCACA+TGG + chr6.2:82894069-82894088 None:intergenic 55.0%
! CACGCCAGACTGTTTCTCCT+CGG - chr6.2:82895169-82895188 MS.gene80845:CDS 55.0%
!! CACTCCCTTCTTGGTGCTAG+TGG - chr6.2:82893464-82893483 MS.gene80845:intron 55.0%
!! CTCCCTTCTTGGTGCTAGTG+GGG - chr6.2:82893466-82893485 MS.gene80845:intron 55.0%
CGAGGAGAAACAGTCTGGCG+TGG + chr6.2:82895171-82895190 None:intergenic 60.0%
CGGCCGCAAAATCTGGTCAG+TGG - chr6.2:82895413-82895432 MS.gene80845:intron 60.0%
!! GGGGCAGAAGTACCTTGGCA+CGG - chr6.2:82893926-82893945 MS.gene80845:intron 60.0%
! GGTGGGCTTGCACCCATGGA+GGG - chr6.2:82895035-82895054 MS.gene80845:intron 65.0%
! CAGGGGTGGGCTTGCACCCA+TGG - chr6.2:82895031-82895050 MS.gene80845:intron 70.0%
! GGGTGGGCTTGCACCCATGG+AGG - chr6.2:82895034-82895053 MS.gene80845:intron 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 82892752 82895929 82892752 ID=MS.gene80845
chr6.2 mRNA 82892752 82895929 82892752 ID=MS.gene80845.t1;Parent=MS.gene80845
chr6.2 exon 82895898 82895929 82895898 ID=MS.gene80845.t1.exon1;Parent=MS.gene80845.t1
chr6.2 CDS 82895898 82895929 82895898 ID=cds.MS.gene80845.t1;Parent=MS.gene80845.t1
chr6.2 exon 82895695 82895771 82895695 ID=MS.gene80845.t1.exon2;Parent=MS.gene80845.t1
chr6.2 CDS 82895695 82895771 82895695 ID=cds.MS.gene80845.t1;Parent=MS.gene80845.t1
chr6.2 exon 82895147 82895276 82895147 ID=MS.gene80845.t1.exon3;Parent=MS.gene80845.t1
chr6.2 CDS 82895147 82895276 82895147 ID=cds.MS.gene80845.t1;Parent=MS.gene80845.t1
chr6.2 exon 82894734 82894893 82894734 ID=MS.gene80845.t1.exon4;Parent=MS.gene80845.t1
chr6.2 CDS 82894734 82894893 82894734 ID=cds.MS.gene80845.t1;Parent=MS.gene80845.t1
chr6.2 exon 82894462 82894647 82894462 ID=MS.gene80845.t1.exon5;Parent=MS.gene80845.t1
chr6.2 CDS 82894462 82894647 82894462 ID=cds.MS.gene80845.t1;Parent=MS.gene80845.t1
chr6.2 exon 82892752 82892865 82892752 ID=MS.gene80845.t1.exon6;Parent=MS.gene80845.t1
chr6.2 CDS 82892752 82892865 82892752 ID=cds.MS.gene80845.t1;Parent=MS.gene80845.t1
Gene Sequence

>MS.gene80845

ATGGACACTGTAACTGAATCCCAGAGAACTCTGTATGTATTCTCCCTCTTCCTCCCTCTTCAATTATTAATGTTCTTTTGATTCAAGTTTAAGGTTTTAATGCAGTAGTTGAAATTTAGTCTTAAATGTATACTTGTTGCTTATTTTCTTTGCTCTAGGTACCCATACGTAACTGGATCCTCCGTCGTTGCTATCAAATACAAAGATGGCATTCTCATGGCTGCTGATATGGGAGGTCTGATGCTAAATCACATCAATTCATATTAATACCATAGCTCTCTCTCTGTTAACTTCACATTTTTCAATTGCAATTTATATGCACCTTCTTCTTGATCACTCTTTTACTTTGTTGGTGCTAGTTTTTAATTATCTTTCCTTCTATTGTGGTTAGATTTTGCTGCCTTCATTTCAAATGTATTTTATTATGATTTTATCTTCAAGTCGAAGTGCTTTAAAACCAGTCCTCCTGTAACTTTTTAAGAAAAAAGTTGTACATGAATAAATGTTGTTTCCTTACAAGGGCCAGTTTTAGTGCTTTTCTTCTGATTTGTAAATGTGTCATCTCTGCAAAGTTCATTGAAGTGTTCAAGTCTTTGTCTCACTCTGCATGTAATGCCAATGATAATTGATGGATAGAATGAACTAATTCACAGGTTCATATGGATCTACACTGAGGTACAAGAGTGTTGAGCGTTTGAAGCCTATTGGAAAGCACTCCCTTCTTGGTGCTAGTGGGGAAATAAGTGACTTTCAGGAGATTATGCGCTACCTTGATGAGCTCATGTGAGTAATTTTTTAAAATAATATAATTAATAATTAATTTCATTAAAATGCACTGATTACTTCAAATAAGTGAAGTAAAAATGGGTGTGATTAATTAAATGGTCTTCCATCAGCTTCATTTTACTTGTTTTTCCTATTTATCTACATTTCAAACACTATAAAAGACATCTTCTGTGCATTTCACCCTTGACTTTAAATATTACAACTTCAAGATTGTCATATAACTGTTACTTTTGACTTTTGATTACCGCAGCCTTATTGACAACATGTGGGATGATGGGAACTCTTTGGGACCTAAGGAGGTCCACAACTATTTAACTCGGGTGATGTATAATAGGCGCAACAAGTTCGATCCATTGTGGAACTCACTTGTTCTTGGTGGTGTTAAAAAGGGGCAGAAGTACCTTGGCACGGTATGCCTTACTTTGTCTTGTCATTCAGTCCGACAGTTGAGGTACCTTCCTGATTTTTGTTTGTTGTGTTTGTGTATCTTATCCAGGTTAGCATGATTGGCGTTAATTACGAAGACAACCATGTGGCAACTGGGCTTGGAAATCATCTTGCTAGGCCAATTCTCCGTGATGAGTGGAATGAAAACTTGACATTTGAAGAAGGTGTCAAGTTACTCGAAAAATGCATGCGAGTGCTTTTGTACCGTGATAGGTCTGCTGTGAACAAGATTCAGGTTTGTCCTGTTTCATTTTCTTGCTGCGTTGCTCTACTCTGCTTTCAACCTCCCTCTCCCCATTTACAACTTATCGAAGTTTAATAATTTAACATCAAAATACTACATGAACATATAATTAACGTGAAAAAGTGAAAACTTCGTAGTTCTATATATAGCTGATAGTGGTTCACCTTTGATCAACTAGCATGCCCAAAGGAAAAATATTCATAAATCTCAAATTTCCATATTTTACATTATCTTTCAAGATCATGCTCAAGTTTTGATTATTTTGGATTATGAATGGAACTTGTAATAGACTTGTTAGAAATTGAATAGCAATTGTTGCTGCAGTTCTTTTAATTTTCTGTACATGCTGTCACTGTTAAGGAAGCCACATTAATTTTTCGGTTAGAAGTTTTAACAATCACATTTTATACATTTAAGAATTGTGTGGTTGAAGTGAAATCATTTGTATGGAACTTCAATTGATAACATTTTTGCTGCTATGTGCCAACTCACATCACATGTTACCTAGATCTGAACGTGACATCCTTATGGCCCTTAAGTCCAGAGTTATGAGGATGTTTCCTACCTTCCTTCCATATTTAATTAATTTTGGCTGGATCAGATCAACATAGCTTAGCATAGAATATTGACCACCTAAGAAATGAAGGCTGTGCCTTAGTAGCAGAAAATAAAGCATCTTCTAATGACGATGATGCAAAAAGTAGCAATAATATTGTTACAGAACCACGAGAGTAAATGTCAAAATTGGGGCTTTGAAGGCTCTTCAACTTTACTCTCGCAGACCAAAGAAGTAAAAACTGAACAGGGGTGGGCTTGCACCCATGGAGGGAAAGTTATTTGAGATAGAAAGGGAGAAAATAGTAAATTCAGGATTTATATAGGTTGATTTGTCGGCATGGGAGTCTGGATTTGCTTTCATTTTTCTGGCTTCGCTTGCGTCCACGCCAGACTGTTTCTCCTCGGCTGAGAGTTTTGTTTGTACCTTCATTCTATATATGTTTTCTGTTATTATCTCAGTAGTAATACAATCTCCTTTTAGATAGGAACTTTCCTATCATAGAGCCATTGGTTTGTGGTTGCACTAGCTTGCTACCATGAATGATTTGGAATACTAAGATCTATTAGATGTGTAACATCAATACACTGGAATAATGTTACAAAAATTTGCTTATGACCCAATTAAGCGGCCGCAAAATCTGGTCAGTGGCTAGTTACTGGAAGGTAATAACACCTAGATGATGGTTGCTTGCCTGTGAATTACGAGACAGTTCTTTAACATCTGATCATGTATATGTGTTAGGTACCTCATCTTGTTCAGCATCCGTGTAAAAGTTTCAATTTCATGGTTATTATGAGAATCTGTTGCTAATTTTATATTCTGATGCTCGAGTGTTGAATTATATTATTTATTTGTTGAATATGTTGCGTCGGGTTAACTATGAGCCTGCACTGCGCCCTAAACTTAATGATGATTTGTTTCGTTCGTTGGTTGTTGAATTCTTCTTATCATAAAATGCAGTTAAACTGAATGAGCTATCTATCTATTTTATTGTGATATTTACTGCATTTATAATGTTAAATTTACAGATATCTAAAATTACCGAAGAAGGTGCTACTGTTTACCCACCATTCTCTTTGAAAACATACTGGGAGTTCTCGGCCTTCAAGAATCCAACAGTTGGTGCTGAAGGTTCATGGTAG
Protein sequence

>MS.gene80845.t1

MDTVTESQRTLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLRYKSVERLKPIGKHSLLGASGEISDFQEIMRYLDELILIDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFDPLWNSLVLGGVKKGQKYLGTVSMIGVNYEDNHVATGLGNHLARPILRDEWNENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQISKITEEGATVYPPFSLKTYWEFSAFKNPTVGAEGSW