Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82567.t1 | XP_003620482.1 | 100 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 1.90E-131 | 478.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82567.t1 | Q7DLR9 | 83.7 | 227 | 37 | 0 | 6 | 232 | 20 | 246 | 1.2e-113 | 410.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82567.t1 | G7KN41 | 100.0 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 1.4e-131 | 478.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82567.t1 | MTR_6g084450 | 100.000 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 8.64e-175 | 479 |
| MS.gene82567.t1 | MTR_4g060540 | 91.810 | 232 | 19 | 0 | 1 | 232 | 1 | 232 | 5.98e-165 | 454 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82567.t1 | AT1G56450 | 83.700 | 227 | 37 | 0 | 6 | 232 | 20 | 246 | 4.13e-148 | 412 |
Find 69 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTCATGGCTGCTGATA+TGG | 0.179124 | 6.3:-78752426 | MS.gene82567:CDS |
| TGGGGAAATAAGTGACTTTC+AGG | 0.197112 | 6.3:-78751881 | MS.gene82567:CDS |
| TGGGATGATGGGAATTCTTT+GGG | 0.256707 | 6.3:-78751565 | MS.gene82567:CDS |
| TGTTCTTGGTGGTGTTAAAA+AGG | 0.257084 | 6.3:-78751464 | MS.gene82567:CDS |
| ATTGGAAAGCACTCCCTTCT+AGG | 0.281758 | 6.3:-78751910 | MS.gene82567:CDS |
| TTGTGGAACTCGCTTGTTCT+TGG | 0.303550 | 6.3:-78751478 | MS.gene82567:CDS |
| GTGGGATGATGGGAATTCTT+TGG | 0.319281 | 6.3:-78751566 | MS.gene82567:CDS |
| GTCTGCTGTCAACAAGATTC+AGG | 0.319668 | 6.3:-78751169 | MS.gene82567:intron |
| CATCCCACATGTTGTCAATA+AGG | 0.327041 | 6.3:+78751581 | None:intergenic |
| TATATCCAGGTTAGCATGAT+TGG | 0.334735 | 6.3:-78751342 | MS.gene82567:intron |
| CATTCTCTTTGAAAACATAC+TGG | 0.339670 | 6.3:-78749485 | MS.gene82567:CDS |
| TTCCACTCATCGCGGAGAAT+TGG | 0.357012 | 6.3:+78751264 | None:intergenic |
| TAACTCGGGTGATGTATAAT+AGG | 0.358277 | 6.3:-78751519 | MS.gene82567:CDS |
| TTTCCCCACTAGCACCTAGA+AGG | 0.363671 | 6.3:+78751896 | None:intergenic |
| GAAGACAACCATGTGGCAAC+TGG | 0.364317 | 6.3:-78751309 | MS.gene82567:CDS |
| GTTGAGCGTTTGAAGCCTAT+TGG | 0.368912 | 6.3:-78751928 | MS.gene82567:CDS |
| ACCTAATTCACAGGTTCATA+TGG | 0.375183 | 6.3:-78751973 | MS.gene82567:intron |
| AAATAGTTGTGGACCTCCTT+AGG | 0.408069 | 6.3:+78751541 | None:intergenic |
| AACCATGTGGCAACTGGGCT+TGG | 0.423568 | 6.3:-78751303 | MS.gene82567:CDS |
| AGAATACATACAGAGTTCTC+TGG | 0.424755 | 6.3:+78752612 | None:intergenic |
| CAGTTGGTGCGGAAGGTTCA+TGG | 0.425167 | 6.3:-78749437 | MS.gene82567:CDS |
| GAAAACATACTGGGAGTTCT+CGG | 0.436500 | 6.3:-78749475 | MS.gene82567:CDS |
| ATTCTCATGGCTGCTGATAT+GGG | 0.437064 | 6.3:-78752425 | MS.gene82567:CDS |
| TGGGAATTCTTTGGGGCCTA+AGG | 0.437285 | 6.3:-78751557 | MS.gene82567:CDS |
| ACCAACTGTTGGATTCTTGA+AGG | 0.439925 | 6.3:+78749452 | None:intergenic |
| AGAAGGGAGTGCTTTCCAAT+AGG | 0.442189 | 6.3:+78751913 | None:intergenic |
| CCTAGGTACCCATATGTAAC+TGG | 0.443031 | 6.3:-78752482 | MS.gene82567:intron |
| ACGGAGGATCCAGTTACATA+TGG | 0.445064 | 6.3:+78752473 | None:intergenic |
| TGGAACTCGCTTGTTCTTGG+TGG | 0.475201 | 6.3:-78751475 | MS.gene82567:CDS |
| CACTCCCTTCTAGGTGCTAG+TGG | 0.485120 | 6.3:-78751901 | MS.gene82567:CDS |
| ATTGACAACATGTGGGATGA+TGG | 0.498069 | 6.3:-78751577 | MS.gene82567:CDS |
| GAACCTTCCGCACCAACTGT+TGG | 0.500259 | 6.3:+78749441 | None:intergenic |
| ATATCTAAAATTACCGAAGA+AGG | 0.520773 | 6.3:-78749525 | MS.gene82567:CDS |
| GAAAACTTGACATTTGAAGA+AGG | 0.522330 | 6.3:-78751240 | MS.gene82567:CDS |
| GTAAACAGTAGCACCTTCTT+CGG | 0.525664 | 6.3:+78749512 | None:intergenic |
| GTTGCTATCAAATACAAAGA+TGG | 0.535140 | 6.3:-78752449 | MS.gene82567:CDS |
| GGGATGATGGGAATTCTTTG+GGG | 0.539307 | 6.3:-78751564 | MS.gene82567:CDS |
| AATCCAACAGTTGGTGCGGA+AGG | 0.547301 | 6.3:-78749444 | MS.gene82567:CDS |
| GGCCAATTCTCCGCGATGAG+TGG | 0.562260 | 6.3:-78751266 | MS.gene82567:CDS |
| GAATACATACAGAGTTCTCT+GGG | 0.564352 | 6.3:+78752613 | None:intergenic |
| GCCTTCAAGAATCCAACAGT+TGG | 0.564781 | 6.3:-78749453 | MS.gene82567:CDS |
| ACTCCCTTCTAGGTGCTAGT+GGG | 0.571082 | 6.3:-78751900 | MS.gene82567:CDS |
| ATACAAAGATGGCATTCTCA+TGG | 0.571569 | 6.3:-78752438 | MS.gene82567:CDS |
| TTGACAACATGTGGGATGAT+GGG | 0.576024 | 6.3:-78751576 | MS.gene82567:CDS |
| GAATTCTTTGGGGCCTAAGG+AGG | 0.577219 | 6.3:-78751554 | MS.gene82567:CDS |
| TTCCAAGCCCAGTTGCCACA+TGG | 0.580626 | 6.3:+78751301 | None:intergenic |
| TTCCCCACTAGCACCTAGAA+GGG | 0.581322 | 6.3:+78751897 | None:intergenic |
| GCAGCCTTATTGACAACATG+TGG | 0.586058 | 6.3:-78751585 | MS.gene82567:intron |
| CGGAGGATCCAGTTACATAT+GGG | 0.588422 | 6.3:+78752474 | None:intergenic |
| AGGTCCACAACTATTTAACT+CGG | 0.589584 | 6.3:-78751534 | MS.gene82567:CDS |
| CTCCCTTCTAGGTGCTAGTG+GGG | 0.600463 | 6.3:-78751899 | MS.gene82567:CDS |
| AAGACAACCATGTGGCAACT+GGG | 0.606831 | 6.3:-78751308 | MS.gene82567:CDS |
| GGCTTGGAAATCATCTTGCT+AGG | 0.608634 | 6.3:-78751287 | MS.gene82567:CDS |
| TTACTCACATGAGCTCATCA+AGG | 0.609092 | 6.3:+78751845 | None:intergenic |
| ATTCTCTTTGAAAACATACT+GGG | 0.610546 | 6.3:-78749484 | MS.gene82567:CDS |
| TTTGTATTTGATAGCAACGA+CGG | 0.611101 | 6.3:+78752454 | None:intergenic |
| TGTTGACAGCAGACCTGTCA+CGG | 0.624315 | 6.3:+78751178 | None:intergenic |
| CAAGAATCCAACAGTTGGTG+CGG | 0.632689 | 6.3:-78749448 | MS.gene82567:CDS |
| TCACCCGAGTTAAATAGTTG+TGG | 0.633695 | 6.3:+78751530 | None:intergenic |
| CTCATGGCTGCTGATATGGG+AGG | 0.637244 | 6.3:-78752422 | MS.gene82567:intron |
| AAGTAAGGCATACCGTGCCA+AGG | 0.647059 | 6.3:+78751431 | None:intergenic |
| GGTCCACAACTATTTAACTC+GGG | 0.657570 | 6.3:-78751533 | MS.gene82567:CDS |
| AGAACAAGCGAGTTCCACAA+TGG | 0.668612 | 6.3:+78751481 | None:intergenic |
| GGGGCAGAAGTACCTTGGCA+CGG | 0.670563 | 6.3:-78751443 | MS.gene82567:intron |
| CAGCCTTATTGACAACATGT+GGG | 0.687070 | 6.3:-78751584 | MS.gene82567:CDS |
| GCAACAAGTTCAATCCATTG+TGG | 0.696663 | 6.3:-78751495 | MS.gene82567:CDS |
| GTATTTGATAGCAACGACGG+AGG | 0.702152 | 6.3:+78752457 | None:intergenic |
| TAATTACGAAGACAACCATG+TGG | 0.788585 | 6.3:-78751316 | MS.gene82567:CDS |
| GTTCATATGGATCTACACTG+AGG | 0.793582 | 6.3:-78751960 | MS.gene82567:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATTAATTATGGAA+GGG | + | chr6.3:78751524-78751543 | None:intergenic | 10.0% |
| !! | ATATAAATTACAATTGTAAA+AGG | + | chr6.3:78749729-78749748 | None:intergenic | 10.0% |
| !! | AAAATAACAATAATTGAAGA+GGG | + | chr6.3:78749490-78749509 | None:intergenic | 15.0% |
| !! | AGAAAACATATATAGAATAA+AGG | + | chr6.3:78751938-78751957 | None:intergenic | 15.0% |
| !! | CAAAATTAATTAATTATGGA+AGG | + | chr6.3:78751525-78751544 | None:intergenic | 15.0% |
| !! | CATGTTAAATTATTAAACTT+TGG | + | chr6.3:78750997-78751016 | None:intergenic | 15.0% |
| !! | TTGAAAGATAATGTAAAATA+TGG | + | chr6.3:78751173-78751192 | None:intergenic | 15.0% |
| !!! | CTTCCATAATTAATTAATTT+TGG | - | chr6.3:78751523-78751542 | MS.gene82567:CDS | 15.0% |
| !!! | TGATTATTTTAGATTATGAA+TGG | - | chr6.3:78751209-78751228 | MS.gene82567:CDS | 15.0% |
| !! | AAATACAACAAACAAAAATC+AGG | + | chr6.3:78750696-78750715 | None:intergenic | 20.0% |
| !! | AACAAATCATCATTAAGTTT+AGG | + | chr6.3:78752412-78752431 | None:intergenic | 20.0% |
| !! | ACAAATCATCATTAAGTTTA+GGG | + | chr6.3:78752411-78752430 | None:intergenic | 20.0% |
| !! | AGTAAATTCAGGATTTATAT+AGG | - | chr6.3:78751813-78751832 | MS.gene82567:intron | 20.0% |
| !! | CAAAATAACAATAATTGAAG+AGG | + | chr6.3:78749491-78749510 | None:intergenic | 20.0% |
| !! | CAGCCAAAATTAATTAATTA+TGG | + | chr6.3:78751529-78751548 | None:intergenic | 20.0% |
| !! | TTCTAACTGAAAAATTAATG+TGG | + | chr6.3:78751324-78751343 | None:intergenic | 20.0% |
| !!! | AAAGTTATTTGAGATAGAAA+GGG | - | chr6.3:78751783-78751802 | MS.gene82567:intron | 20.0% |
| !!! | AAATACAACATTTGAAATGA+AGG | + | chr6.3:78749831-78749850 | None:intergenic | 20.0% |
| !!! | ACATCTATAAAGAAATTTTC+AGG | + | chr6.3:78749899-78749918 | None:intergenic | 20.0% |
| !!! | ATGAAATTGAAACTTTTACA+CGG | + | chr6.3:78752278-78752297 | None:intergenic | 20.0% |
| !!! | CATAATTAATTAATTTTGGC+TGG | - | chr6.3:78751527-78751546 | MS.gene82567:CDS | 20.0% |
| !!! | GTTATTTTGATTCAAGTTTA+AGG | - | chr6.3:78749502-78749521 | MS.gene82567:CDS | 20.0% |
| !!! | GTTGTAATATTTAAAGTCAA+GGG | + | chr6.3:78750418-78750437 | None:intergenic | 20.0% |
| !!! | TATTTTTGTATCTTATATCC+AGG | - | chr6.3:78750711-78750730 | MS.gene82567:intron | 20.0% |
| !!! | TGTTTGAAATGTACATAAAT+AGG | + | chr6.3:78750370-78750389 | None:intergenic | 20.0% |
| ! | AAACTTTGGTAAGTTGTAAA+TGG | + | chr6.3:78750983-78751002 | None:intergenic | 25.0% |
| ! | AAAGAAGTAAAAACTGAACA+GGG | - | chr6.3:78751738-78751757 | MS.gene82567:intron | 25.0% |
| ! | AACTTTGGTAAGTTGTAAAT+GGG | + | chr6.3:78750982-78751001 | None:intergenic | 25.0% |
| ! | ATTAATTAATTATGGAAGGG+AGG | + | chr6.3:78751521-78751540 | None:intergenic | 25.0% |
| ! | ATTATGAATGGAACTTGTAA+TGG | - | chr6.3:78751221-78751240 | MS.gene82567:CDS | 25.0% |
| ! | CAAATAAGTGAAGCAAAAAT+GGG | - | chr6.3:78750294-78750313 | MS.gene82567:intron | 25.0% |
| ! | GTGTAAAAGTTTCAATTTCA+TGG | - | chr6.3:78752277-78752296 | MS.gene82567:intron | 25.0% |
| ! | TACATTTCAAACACTGTAAA+AGG | - | chr6.3:78750377-78750396 | MS.gene82567:intron | 25.0% |
| ! | TCAAATAAGTGAAGCAAAAA+TGG | - | chr6.3:78750293-78750312 | MS.gene82567:intron | 25.0% |
| ! | TTAGTATTCCAAATCATTCA+TGG | + | chr6.3:78752049-78752068 | None:intergenic | 25.0% |
| ! | TTGATACATTAAGAATTGTG+TGG | - | chr6.3:78751359-78751378 | MS.gene82567:intron | 25.0% |
| !! | AATACAATCTCCTTTTAGAT+AGG | - | chr6.3:78751975-78751994 | MS.gene82567:intron | 25.0% |
| !! | ATATCTAAAATTACCGAAGA+AGG | - | chr6.3:78752541-78752560 | MS.gene82567:intron | 25.0% |
| !! | ATTCTCTTTGAAAACATACT+GGG | - | chr6.3:78752582-78752601 | MS.gene82567:intron | 25.0% |
| !! | GAAAGTTATTTGAGATAGAA+AGG | - | chr6.3:78751782-78751801 | MS.gene82567:intron | 25.0% |
| !! | GGTTGTAATATTTAAAGTCA+AGG | + | chr6.3:78750419-78750438 | None:intergenic | 25.0% |
| !!! | ATTTATATAGGTTGATTCGT+TGG | - | chr6.3:78751825-78751844 | MS.gene82567:intron | 25.0% |
| !!! | TCCTTTATTTTCTACTACTA+AGG | + | chr6.3:78751609-78751628 | None:intergenic | 25.0% |
| !!! | TGAATTTGCTTTCATTTTTC+TGG | - | chr6.3:78751858-78751877 | MS.gene82567:CDS | 25.0% |
| AAGAAGTAAAAACTGAACAG+GGG | - | chr6.3:78751739-78751758 | MS.gene82567:intron | 30.0% | |
| AAGTAAAAGAGTGAACAAGA+AGG | + | chr6.3:78749755-78749774 | None:intergenic | 30.0% | |
| AAGTAAATTGATGAAGCTGA+TGG | + | chr6.3:78750341-78750360 | None:intergenic | 30.0% | |
| AATTACCTTTCCTACTATTG+CGG | - | chr6.3:78749792-78749811 | MS.gene82567:intron | 30.0% | |
| ACAACAAACAAAAATCAGGT+AGG | + | chr6.3:78750692-78750711 | None:intergenic | 30.0% | |
| ACAGTTATATGAGAATCATG+AGG | + | chr6.3:78750440-78750459 | None:intergenic | 30.0% | |
| ACGAGAGTAAATGTCAAAAT+TGG | - | chr6.3:78751679-78751698 | MS.gene82567:intron | 30.0% | |
| ACTCTAAATTCAGAGTTATG+AGG | - | chr6.3:78751485-78751504 | MS.gene82567:CDS | 30.0% | |
| ACTTTGGTAAGTTGTAAATG+GGG | + | chr6.3:78750981-78751000 | None:intergenic | 30.0% | |
| AGGGAGAAAATAGTAAATTC+AGG | - | chr6.3:78751802-78751821 | MS.gene82567:intron | 30.0% | |
| ATAACAATAATTGAAGAGGG+AGG | + | chr6.3:78749487-78749506 | None:intergenic | 30.0% | |
| CAAAGAAGTAAAAACTGAAC+AGG | - | chr6.3:78751737-78751756 | MS.gene82567:intron | 30.0% | |
| CAGCTATATATAGAACTACA+AGG | + | chr6.3:78751062-78751081 | None:intergenic | 30.0% | |
| CGAGAGTAAATGTCAAAATT+GGG | - | chr6.3:78751680-78751699 | MS.gene82567:intron | 30.0% | |
| GAAAACTTGACATTTGAAGA+AGG | - | chr6.3:78750826-78750845 | MS.gene82567:intron | 30.0% | |
| GAGAGTAAATGTCAAAATTG+GGG | - | chr6.3:78751681-78751700 | MS.gene82567:intron | 30.0% | |
| GATGCTAATATGAATTGATG+TGG | + | chr6.3:78749682-78749701 | None:intergenic | 30.0% | |
| GCCTTAGTAGTAGAAAATAA+AGG | - | chr6.3:78751605-78751624 | MS.gene82567:intron | 30.0% | |
| GTTCTATATATAGCTGATAG+TGG | - | chr6.3:78751066-78751085 | MS.gene82567:intron | 30.0% | |
| GTTGCTATCAAATACAAAGA+TGG | - | chr6.3:78749617-78749636 | MS.gene82567:intron | 30.0% | |
| TAAAATCTAACCGCAATAGT+AGG | + | chr6.3:78749805-78749824 | None:intergenic | 30.0% | |
| TAAATGTCACTAAAATGCAC+TGG | - | chr6.3:78750265-78750284 | MS.gene82567:intron | 30.0% | |
| TAGGAAAGTTCCTATCTAAA+AGG | + | chr6.3:78751988-78752007 | None:intergenic | 30.0% | |
| TCTGATCATGTATATGTGTT+AGG | - | chr6.3:78752232-78752251 | MS.gene82567:intron | 30.0% | |
| TTCAATCCATCAATTATCAG+TGG | + | chr6.3:78750071-78750090 | None:intergenic | 30.0% | |
| ! | AATGGGTGTGATTAGTTAAA+TGG | - | chr6.3:78750311-78750330 | MS.gene82567:intron | 30.0% |
| ! | ACTCTGAATTTAGAGTCATA+AGG | + | chr6.3:78751481-78751500 | None:intergenic | 30.0% |
| ! | ATGTTTTCAAAGAGAATGGT+GGG | + | chr6.3:78752579-78752598 | None:intergenic | 30.0% |
| ! | ATTTGTTGAGTATGTTGTGT+CGG | - | chr6.3:78752362-78752381 | MS.gene82567:intron | 30.0% |
| ! | CAGTATGTTTTCAAAGAGAA+TGG | + | chr6.3:78752583-78752602 | None:intergenic | 30.0% |
| ! | CATTCTCTTTGAAAACATAC+TGG | - | chr6.3:78752581-78752600 | MS.gene82567:intron | 30.0% |
| ! | CTGTTCAGTTTTTACTTCTT+TGG | + | chr6.3:78751739-78751758 | None:intergenic | 30.0% |
| ! | TATGTTTTCAAAGAGAATGG+TGG | + | chr6.3:78752580-78752599 | None:intergenic | 30.0% |
| ! | TGTTCACTCTTTTACTTTGT+TGG | - | chr6.3:78749758-78749777 | MS.gene82567:intron | 30.0% |
| ! | TTTGTATTTGATAGCAACGA+CGG | + | chr6.3:78749615-78749634 | None:intergenic | 30.0% |
| !! | AATTTTGACATTTACTCTCG+TGG | + | chr6.3:78751680-78751699 | None:intergenic | 30.0% |
| !!! | ATAAGTTTTGTTTCCTTGCA+AGG | - | chr6.3:78749950-78749969 | MS.gene82567:intron | 30.0% |
| !!! | TAAGTTTTGTTTCCTTGCAA+GGG | - | chr6.3:78749951-78749970 | MS.gene82567:intron | 30.0% |
| ACCTAATTCACAGGTTCATA+TGG | - | chr6.3:78750093-78750112 | MS.gene82567:intron | 35.0% | |
| AGAATACATACAGAGTTCTC+TGG | + | chr6.3:78749457-78749476 | None:intergenic | 35.0% | |
| AGGTAACATGTGATGTGAAT+TGG | + | chr6.3:78751441-78751460 | None:intergenic | 35.0% | |
| AGGTAATAACACCTAGATGA+TGG | - | chr6.3:78752173-78752192 | MS.gene82567:intron | 35.0% | |
| AGGTCCACAACTATTTAACT+CGG | - | chr6.3:78750532-78750551 | MS.gene82567:intron | 35.0% | |
| ATACAAAGATGGCATTCTCA+TGG | - | chr6.3:78749628-78749647 | MS.gene82567:intron | 35.0% | |
| ATGATGCCACTGATAATTGA+TGG | - | chr6.3:78750062-78750081 | MS.gene82567:intron | 35.0% | |
| ATTAATTATGGAAGGGAGGT+AGG | + | chr6.3:78751517-78751536 | None:intergenic | 35.0% | |
| ATTGACCACCTAAGAAATGA+AGG | - | chr6.3:78751578-78751597 | MS.gene82567:CDS | 35.0% | |
| CTGAATGACAAGACAAAGTA+AGG | + | chr6.3:78750653-78750672 | None:intergenic | 35.0% | |
| CTTTGGTAAGTTGTAAATGG+GGG | + | chr6.3:78750980-78750999 | None:intergenic | 35.0% | |
| GAATACATACAGAGTTCTCT+GGG | + | chr6.3:78749456-78749475 | None:intergenic | 35.0% | |
| GATGTGTAACATCAATACAC+TGG | - | chr6.3:78752078-78752097 | MS.gene82567:intron | 35.0% | |
| GATTGAATGACCTAATTCAC+AGG | - | chr6.3:78750084-78750103 | MS.gene82567:intron | 35.0% | |
| GCTTACTACCATGAATGATT+TGG | - | chr6.3:78752038-78752057 | MS.gene82567:intron | 35.0% | |
| TAACTCGGGTGATGTATAAT+AGG | - | chr6.3:78750547-78750566 | MS.gene82567:intron | 35.0% | |
| TAATTACGAAGACAACCATG+TGG | - | chr6.3:78750750-78750769 | MS.gene82567:intron | 35.0% | |
| TATATCCAGGTTAGCATGAT+TGG | - | chr6.3:78750724-78750743 | MS.gene82567:intron | 35.0% | |
| TCAAATAACTTTCCCTCCAT+GGG | + | chr6.3:78751775-78751794 | None:intergenic | 35.0% | |
| TCCATATGAACCTGTGAATT+AGG | + | chr6.3:78750097-78750116 | None:intergenic | 35.0% | |
| TTGCTTATGACCCAATTAAG+CGG | - | chr6.3:78752118-78752137 | MS.gene82567:intron | 35.0% | |
| TTTGGTAAGTTGTAAATGGG+GGG | + | chr6.3:78750979-78750998 | None:intergenic | 35.0% | |
| TTTGTTGAGTATGTTGTGTC+GGG | - | chr6.3:78752363-78752382 | MS.gene82567:intron | 35.0% | |
| !! | AATGGAACTTGTAATGGACT+TGG | - | chr6.3:78751227-78751246 | MS.gene82567:CDS | 35.0% |
| !! | CAGAAGAAAAGCACTAAAAC+TGG | + | chr6.3:78749977-78749996 | None:intergenic | 35.0% |
| !! | GTTCTTGGTGGTGTTAAAAA+GGG | - | chr6.3:78750603-78750622 | MS.gene82567:intron | 35.0% |
| !! | TGATGATTTGTTTCGTTCGT+TGG | - | chr6.3:78752420-78752439 | MS.gene82567:intron | 35.0% |
| !! | TGTTCTTGGTGGTGTTAAAA+AGG | - | chr6.3:78750602-78750621 | MS.gene82567:intron | 35.0% |
| !! | TTCTTGGTGGTGTTAAAAAG+GGG | - | chr6.3:78750604-78750623 | MS.gene82567:intron | 35.0% |
| AAATAGTTGTGGACCTCCTT+AGG | + | chr6.3:78750528-78750547 | None:intergenic | 40.0% | |
| AAGTAAAAACTGAACAGGGG+TGG | - | chr6.3:78751742-78751761 | MS.gene82567:intron | 40.0% | |
| AAGTCAAGGGTAAAATACGC+AGG | + | chr6.3:78750405-78750424 | None:intergenic | 40.0% | |
| ACATGTTGTCAATAAGGCTG+CGG | + | chr6.3:78750482-78750501 | None:intergenic | 40.0% | |
| ACCAACTGTTGGATTCTTGA+AGG | + | chr6.3:78752617-78752636 | None:intergenic | 40.0% | |
| ACGCAGCAAGAAAATGAAAC+AGG | + | chr6.3:78750928-78750947 | None:intergenic | 40.0% | |
| AGAACTGTCTCGTAATTCAC+AGG | + | chr6.3:78752206-78752225 | None:intergenic | 40.0% | |
| AGGATGTCACGTTTAGATCT+AGG | + | chr6.3:78751461-78751480 | None:intergenic | 40.0% | |
| AGGCAAAGCCTTCATTTCTT+AGG | + | chr6.3:78751589-78751608 | None:intergenic | 40.0% | |
| AGTAAAAACTGAACAGGGGT+GGG | - | chr6.3:78751743-78751762 | MS.gene82567:intron | 40.0% | |
| ATTCTCATGGCTGCTGATAT+GGG | - | chr6.3:78749641-78749660 | MS.gene82567:intron | 40.0% | |
| ATTGACAACATGTGGGATGA+TGG | - | chr6.3:78750489-78750508 | MS.gene82567:intron | 40.0% | |
| CAAAGCCTTCATTTCTTAGG+TGG | + | chr6.3:78751586-78751605 | None:intergenic | 40.0% | |
| CAGTTACATATGGGTACCTA+GGG | + | chr6.3:78749586-78749605 | None:intergenic | 40.0% | |
| CATCCCACATGTTGTCAATA+AGG | + | chr6.3:78750488-78750507 | None:intergenic | 40.0% | |
| CTAATGCAACCACAAACCAA+TGG | + | chr6.3:78752019-78752038 | None:intergenic | 40.0% | |
| CTCAAATAACTTTCCCTCCA+TGG | + | chr6.3:78751776-78751795 | None:intergenic | 40.0% | |
| CTTTCCTATCATAGAGCCAT+TGG | - | chr6.3:78752000-78752019 | MS.gene82567:intron | 40.0% | |
| GAAAACATACTGGGAGTTCT+CGG | - | chr6.3:78752591-78752610 | MS.gene82567:intron | 40.0% | |
| GCAACAAGTTCAATCCATTG+TGG | - | chr6.3:78750571-78750590 | MS.gene82567:intron | 40.0% | |
| GGTCCACAACTATTTAACTC+GGG | - | chr6.3:78750533-78750552 | MS.gene82567:intron | 40.0% | |
| GTAAACAGTAGCACCTTCTT+CGG | + | chr6.3:78752557-78752576 | None:intergenic | 40.0% | |
| GTCATTCAGTCTAACAGTTG+AGG | - | chr6.3:78750664-78750683 | MS.gene82567:intron | 40.0% | |
| GTTCATATGGATCTACACTG+AGG | - | chr6.3:78750106-78750125 | MS.gene82567:intron | 40.0% | |
| TCACCCGAGTTAAATAGTTG+TGG | + | chr6.3:78750539-78750558 | None:intergenic | 40.0% | |
| TCTAACCGCAATAGTAGGAA+AGG | + | chr6.3:78749800-78749819 | None:intergenic | 40.0% | |
| TGGATCAGATCAACATAGCT+TGG | - | chr6.3:78751547-78751566 | MS.gene82567:CDS | 40.0% | |
| TGGGGAAATAAGTGACTTTC+AGG | - | chr6.3:78750185-78750204 | MS.gene82567:intron | 40.0% | |
| TGTACATGCTGTCACTGTTA+AGG | - | chr6.3:78751295-78751314 | MS.gene82567:CDS | 40.0% | |
| TTACTCACATGAGCTCATCA+AGG | + | chr6.3:78750224-78750243 | None:intergenic | 40.0% | |
| TTGACAACATGTGGGATGAT+GGG | - | chr6.3:78750490-78750509 | MS.gene82567:intron | 40.0% | |
| ! | AGTTTTCATTCCACTCATCG+CGG | + | chr6.3:78750813-78750832 | None:intergenic | 40.0% |
| ! | CAAACCAATGGCTCTATGAT+AGG | + | chr6.3:78752007-78752026 | None:intergenic | 40.0% |
| ! | TGTCAAAATTGGGGCTTTGA+AGG | - | chr6.3:78751690-78751709 | MS.gene82567:intron | 40.0% |
| !! | ATCATAGAGCCATTGGTTTG+TGG | - | chr6.3:78752007-78752026 | MS.gene82567:intron | 40.0% |
| !! | CAGCCTTATTGACAACATGT+GGG | - | chr6.3:78750482-78750501 | MS.gene82567:intron | 40.0% |
| !! | TATAGGTTGATTCGTTGGCA+TGG | - | chr6.3:78751830-78751849 | MS.gene82567:intron | 40.0% |
| !! | TGGGATGATGGGAATTCTTT+GGG | - | chr6.3:78750501-78750520 | MS.gene82567:intron | 40.0% |
| !! | TTGCTTATTTTCTGTGCCCT+AGG | - | chr6.3:78749567-78749586 | MS.gene82567:intron | 40.0% |
| !!! | TCATTTTTCTGGCTTCGCTT+GGG | - | chr6.3:78751869-78751888 | MS.gene82567:CDS | 40.0% |
| !!! | TTCATTTTTCTGGCTTCGCT+TGG | - | chr6.3:78751868-78751887 | MS.gene82567:CDS | 40.0% |
| AAGACAACCATGTGGCAACT+GGG | - | chr6.3:78750758-78750777 | MS.gene82567:intron | 45.0% | |
| AAGTTGTAAATGGGGGGAGA+CGG | + | chr6.3:78750973-78750992 | None:intergenic | 45.0% | |
| AATTAAGCGGCCGCAAAATC+TGG | - | chr6.3:78752131-78752150 | MS.gene82567:intron | 45.0% | |
| ACAAACAAAACTCTCAGCCG+AGG | + | chr6.3:78751914-78751933 | None:intergenic | 45.0% | |
| ACGGAGGATCCAGTTACATA+TGG | + | chr6.3:78749596-78749615 | None:intergenic | 45.0% | |
| AGAACAAGCGAGTTCCACAA+TGG | + | chr6.3:78750588-78750607 | None:intergenic | 45.0% | |
| ATAATTGAAGAGGGAGGACG+AGG | + | chr6.3:78749481-78749500 | None:intergenic | 45.0% | |
| CATTCTCATGGCTGCTGATA+TGG | - | chr6.3:78749640-78749659 | MS.gene82567:intron | 45.0% | |
| CCAGTTACATATGGGTACCT+AGG | + | chr6.3:78749587-78749606 | None:intergenic | 45.0% | |
| CCTAGGTACCCATATGTAAC+TGG | - | chr6.3:78749584-78749603 | MS.gene82567:intron | 45.0% | |
| CGGAGGATCCAGTTACATAT+GGG | + | chr6.3:78749595-78749614 | None:intergenic | 45.0% | |
| GCCTTCAAGAATCCAACAGT+TGG | - | chr6.3:78752613-78752632 | MS.gene82567:intron | 45.0% | |
| GGCTTGGAAATCATCTTGCT+AGG | - | chr6.3:78750779-78750798 | MS.gene82567:intron | 45.0% | |
| GTCTGCTGTCAACAAGATTC+AGG | - | chr6.3:78750897-78750916 | MS.gene82567:intron | 45.0% | |
| TAACGCCAATCATGCTAACC+TGG | + | chr6.3:78750732-78750751 | None:intergenic | 45.0% | |
| TAATTGAAGAGGGAGGACGA+GGG | + | chr6.3:78749480-78749499 | None:intergenic | 45.0% | |
| TGATCAACTAGCATGCCCAT+AGG | - | chr6.3:78751097-78751116 | MS.gene82567:intron | 45.0% | |
| TGGGCATGCTAGTTGATCAA+AGG | + | chr6.3:78751096-78751115 | None:intergenic | 45.0% | |
| TTGTGGAACTCGCTTGTTCT+TGG | - | chr6.3:78750588-78750607 | MS.gene82567:intron | 45.0% | |
| ! | AGATTTTGCGGCCGCTTAAT+TGG | + | chr6.3:78752132-78752151 | None:intergenic | 45.0% |
| ! | CAAGAATCCAACAGTTGGTG+CGG | - | chr6.3:78752618-78752637 | MS.gene82567:intron | 45.0% |
| ! | GATTTTGCGGCCGCTTAATT+GGG | + | chr6.3:78752131-78752150 | None:intergenic | 45.0% |
| ! | GTATTTGATAGCAACGACGG+AGG | + | chr6.3:78749612-78749631 | None:intergenic | 45.0% |
| ! | GTTGAGCGTTTGAAGCCTAT+TGG | - | chr6.3:78750138-78750157 | MS.gene82567:intron | 45.0% |
| ! | TAGCCACTGACCAGATTTTG+CGG | + | chr6.3:78752144-78752163 | None:intergenic | 45.0% |
| ! | TTTTTCCCAAGTGTAGCACC+TGG | + | chr6.3:78751130-78751149 | None:intergenic | 45.0% |
| !! | AAAAAGGGGCAGAAGTACCT+TGG | - | chr6.3:78750618-78750637 | MS.gene82567:intron | 45.0% |
| !! | AGAAGGGAGTGCTTTCCAAT+AGG | + | chr6.3:78750156-78750175 | None:intergenic | 45.0% |
| !! | ATTGGAAAGCACTCCCTTCT+AGG | - | chr6.3:78750156-78750175 | MS.gene82567:intron | 45.0% |
| !! | GCAGCCTTATTGACAACATG+TGG | - | chr6.3:78750481-78750500 | MS.gene82567:intron | 45.0% |
| !! | GGGATGATGGGAATTCTTTG+GGG | - | chr6.3:78750502-78750521 | MS.gene82567:intron | 45.0% |
| !! | GTGGGATGATGGGAATTCTT+TGG | - | chr6.3:78750500-78750519 | MS.gene82567:intron | 45.0% |
| !!! | CATTTTTCTGGCTTCGCTTG+GGG | - | chr6.3:78751870-78751889 | MS.gene82567:CDS | 45.0% |
| AAGTAAGGCATACCGTGCCA+AGG | + | chr6.3:78750638-78750657 | None:intergenic | 50.0% | |
| ACTCCCTTCTAGGTGCTAGT+GGG | - | chr6.3:78750166-78750185 | MS.gene82567:intron | 50.0% | |
| CACGGATGCTGAACAAGATG+AGG | + | chr6.3:78752260-78752279 | None:intergenic | 50.0% | |
| CACTAAAACTGGCCCTTGCA+AGG | + | chr6.3:78749966-78749985 | None:intergenic | 50.0% | |
| CAGGCAAGCAACCATCATCT+AGG | + | chr6.3:78752187-78752206 | None:intergenic | 50.0% | |
| GAAGACAACCATGTGGCAAC+TGG | - | chr6.3:78750757-78750776 | MS.gene82567:intron | 50.0% | |
| TGGAACTCGCTTGTTCTTGG+TGG | - | chr6.3:78750591-78750610 | MS.gene82567:intron | 50.0% | |
| TGTTGACAGCAGACCTGTCA+CGG | + | chr6.3:78750891-78750910 | None:intergenic | 50.0% | |
| TTCCACTCATCGCGGAGAAT+TGG | + | chr6.3:78750805-78750824 | None:intergenic | 50.0% | |
| TTCCCCACTAGCACCTAGAA+GGG | + | chr6.3:78750172-78750191 | None:intergenic | 50.0% | |
| TTTCCCCACTAGCACCTAGA+AGG | + | chr6.3:78750173-78750192 | None:intergenic | 50.0% | |
| ! | AATCCAACAGTTGGTGCGGA+AGG | - | chr6.3:78752622-78752641 | MS.gene82567:intron | 50.0% |
| ! | GAGTGCTTTTGTACCGTGAC+AGG | - | chr6.3:78750875-78750894 | MS.gene82567:intron | 50.0% |
| ! | GTCAGTGGCTAGTTACTGGA+AGG | - | chr6.3:78752153-78752172 | MS.gene82567:intron | 50.0% |
| ! | TCTGGTCAGTGGCTAGTTAC+TGG | - | chr6.3:78752149-78752168 | MS.gene82567:intron | 50.0% |
| ! | TTAAGTTTAGGGCGCAGTGC+AGG | + | chr6.3:78752400-78752419 | None:intergenic | 50.0% |
| !! | GAATTCTTTGGGGCCTAAGG+AGG | - | chr6.3:78750512-78750531 | MS.gene82567:intron | 50.0% |
| !! | TGGGAATTCTTTGGGGCCTA+AGG | - | chr6.3:78750509-78750528 | MS.gene82567:intron | 50.0% |
| AACCATGTGGCAACTGGGCT+TGG | - | chr6.3:78750763-78750782 | MS.gene82567:intron | 55.0% | |
| ACTAGCATGCCCATAGGTCG+AGG | - | chr6.3:78751103-78751122 | MS.gene82567:intron | 55.0% | |
| CACTCCCTTCTAGGTGCTAG+TGG | - | chr6.3:78750165-78750184 | MS.gene82567:intron | 55.0% | |
| CTCATGGCTGCTGATATGGG+AGG | - | chr6.3:78749644-78749663 | MS.gene82567:intron | 55.0% | |
| CTCCCTTCTAGGTGCTAGTG+GGG | - | chr6.3:78750167-78750186 | MS.gene82567:intron | 55.0% | |
| GAACCTTCCGCACCAACTGT+TGG | + | chr6.3:78752628-78752647 | None:intergenic | 55.0% | |
| TCAGCCGAGGAGAAACAGTC+TGG | + | chr6.3:78751901-78751920 | None:intergenic | 55.0% | |
| TTCCAAGCCCAGTTGCCACA+TGG | + | chr6.3:78750768-78750787 | None:intergenic | 55.0% | |
| TTGTAAATGGGGGGAGACGG+AGG | + | chr6.3:78750970-78750989 | None:intergenic | 55.0% | |
| ! | CACGCCAGACTGTTTCTCCT+CGG | - | chr6.3:78751894-78751913 | MS.gene82567:CDS | 55.0% |
| ! | CAGTTGGTGCGGAAGGTTCA+TGG | - | chr6.3:78752629-78752648 | MS.gene82567:CDS | 55.0% |
| ! | GAGGTCCAGGTGCTACACTT+GGG | - | chr6.3:78751122-78751141 | MS.gene82567:intron | 55.0% |
| AGCACCTGGACCTCGACCTA+TGG | + | chr6.3:78751116-78751135 | None:intergenic | 60.0% | |
| ATGCCCATAGGTCGAGGTCC+AGG | - | chr6.3:78751109-78751128 | MS.gene82567:intron | 60.0% | |
| CGAGGAGAAACAGTCTGGCG+TGG | + | chr6.3:78751896-78751915 | None:intergenic | 60.0% | |
| CGGCCGCAAAATCTGGTCAG+TGG | - | chr6.3:78752138-78752157 | MS.gene82567:intron | 60.0% | |
| GCACCTGGACCTCGACCTAT+GGG | + | chr6.3:78751115-78751134 | None:intergenic | 60.0% | |
| GGCCAATTCTCCGCGATGAG+TGG | - | chr6.3:78750800-78750819 | MS.gene82567:intron | 60.0% | |
| ! | CGAGGTCCAGGTGCTACACT+TGG | - | chr6.3:78751121-78751140 | MS.gene82567:intron | 60.0% |
| !! | GGGGCAGAAGTACCTTGGCA+CGG | - | chr6.3:78750623-78750642 | MS.gene82567:intron | 60.0% |
| ! | GGTGGGCTTGCACCCATGGA+GGG | - | chr6.3:78751760-78751779 | MS.gene82567:intron | 65.0% |
| ! | CAGGGGTGGGCTTGCACCCA+TGG | - | chr6.3:78751756-78751775 | MS.gene82567:intron | 70.0% |
| ! | GGGTGGGCTTGCACCCATGG+AGG | - | chr6.3:78751759-78751778 | MS.gene82567:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 78749434 | 78752654 | 78749434 | ID=MS.gene82567 |
| chr6.3 | mRNA | 78749434 | 78752654 | 78749434 | ID=MS.gene82567.t1;Parent=MS.gene82567 |
| chr6.3 | exon | 78752623 | 78752654 | 78752623 | ID=MS.gene82567.t1.exon1;Parent=MS.gene82567.t1 |
| chr6.3 | CDS | 78752623 | 78752654 | 78752623 | ID=cds.MS.gene82567.t1;Parent=MS.gene82567.t1 |
| chr6.3 | exon | 78752423 | 78752499 | 78752423 | ID=MS.gene82567.t1.exon2;Parent=MS.gene82567.t1 |
| chr6.3 | CDS | 78752423 | 78752499 | 78752423 | ID=cds.MS.gene82567.t1;Parent=MS.gene82567.t1 |
| chr6.3 | exon | 78751853 | 78751982 | 78751853 | ID=MS.gene82567.t1.exon3;Parent=MS.gene82567.t1 |
| chr6.3 | CDS | 78751853 | 78751982 | 78751853 | ID=cds.MS.gene82567.t1;Parent=MS.gene82567.t1 |
| chr6.3 | exon | 78751444 | 78751603 | 78751444 | ID=MS.gene82567.t1.exon4;Parent=MS.gene82567.t1 |
| chr6.3 | CDS | 78751444 | 78751603 | 78751444 | ID=cds.MS.gene82567.t1;Parent=MS.gene82567.t1 |
| chr6.3 | exon | 78751170 | 78751355 | 78751170 | ID=MS.gene82567.t1.exon5;Parent=MS.gene82567.t1 |
| chr6.3 | CDS | 78751170 | 78751355 | 78751170 | ID=cds.MS.gene82567.t1;Parent=MS.gene82567.t1 |
| chr6.3 | exon | 78749434 | 78749547 | 78749434 | ID=MS.gene82567.t1.exon6;Parent=MS.gene82567.t1 |
| chr6.3 | CDS | 78749434 | 78749547 | 78749434 | ID=cds.MS.gene82567.t1;Parent=MS.gene82567.t1 |
| Gene Sequence |
| Protein sequence |
