AlfalfaGEDB | MS.gene82701

M. sativa cultivar XinJiangDaYe / MS.gene82701

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82701.t1	XP_003600045.1	71	145	40	1	26	170	5	147	8.60E-49	203.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82701.t1	G7IXJ5	71.0	145	40	1	26	170	5	147	6.2e-49	203.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene82701	0.81773	2.83E-52	-1.69E-46
MS.gene049404	MS.gene82701	0.833888	4.12E-56	-1.69E-46
MS.gene049585	MS.gene82701	0.802692	4.97E-49	-1.69E-46
MS.gene049850	MS.gene82701	0.803667	3.12E-49	-1.69E-46
MS.gene050273	MS.gene82701	0.822559	2.22E-53	-1.69E-46
MS.gene050780	MS.gene82701	0.819134	1.36E-52	-1.69E-46
MS.gene050807	MS.gene82701	0.832025	1.20E-55	-1.69E-46
MS.gene050826	MS.gene82701	0.808546	2.94E-50	-1.69E-46
MS.gene051198	MS.gene82701	0.827693	1.36E-54	-1.69E-46
MS.gene051247	MS.gene82701	0.824583	7.46E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82701.t1	MTR_3g051110	71.034	145	40	1	26	170	5	147	2.68e-69	207

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82701.t1	AT5G54855	56.618	136	57	1	34	169	13	146	1.58e-48	154

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Find 40 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGCCCGAGAGTGATCGTT+GGG	0.504720	3.1:+38127528	MS.gene82701:CDS
AATGGTTAAATACGCAAATG+TGG	0.598016	3.1:-38126768	None:intergenic
ACAGCATGTGAGTACCCCGA+TGG	0.701199	3.1:-38127643	None:intergenic
ACTATGACTCATCACCAAAA+TGG	0.362381	3.1:-38126786	None:intergenic
AGGCATTTACAGATGCTAAG+GGG	0.710498	3.1:+38127485	MS.gene82701:CDS
AGTGGGATCCTATGAAGGGT+TGG	0.600492	3.1:+38127142	MS.gene82701:CDS
ATATATCAGATGCAGTATGT+TGG	0.578522	3.1:-38127697	None:intergenic
ATGTTGGAACATTGACAGGT+TGG	0.603546	3.1:-38127681	None:intergenic
ATTCAGTTACAATCATCCAT+CGG	0.553429	3.1:+38127627	MS.gene82701:CDS
ATTGACAGGTTGGTAAACAA+AGG	0.608179	3.1:-38127671	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGTTAAATACGCAAATG+TGG	-	chr3.1:38126771-38126790	None:intergenic	30.0%
AGTTCAGTACAACTAATAAC+CGG	-	chr3.1:38126237-38126256	None:intergenic	30.0%
ATAACAGCACAAAAGTTAGA+GGG	-	chr3.1:38127259-38127278	None:intergenic	30.0%
ATCAGTTACAGATCTATTGT+AGG	+	chr3.1:38127165-38127184	MS.gene82701:intron	30.0%
ATGACTTAAACCAATTCTAG+AGG	-	chr3.1:38126904-38126923	None:intergenic	30.0%
ATTCAGTTACAATCATCCAT+CGG	+	chr3.1:38127627-38127646	MS.gene82701:CDS	30.0%
CAAGACAGTGTGATTAATAA+CGG	-	chr3.1:38126491-38126510	None:intergenic	30.0%
GTAGTGAAGACAAAACTTAT+TGG	+	chr3.1:38125595-38125614	MS.gene82701:CDS	30.0%
TAAATGCTGCTAAAAGAACA+GGG	-	chr3.1:38126675-38126694	None:intergenic	30.0%
TACTTATATCAACCACTTTG+TGG	+	chr3.1:38126422-38126441	MS.gene82701:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	38125573	38127714	38125573	ID=MS.gene82701
chr3.1	mRNA	38125573	38127714	38125573	ID=MS.gene82701.t1;Parent=MS.gene82701
chr3.1	exon	38125573	38125661	38125573	ID=MS.gene82701.t1.exon1;Parent=MS.gene82701.t1
chr3.1	CDS	38125573	38125661	38125573	ID=cds.MS.gene82701.t1;Parent=MS.gene82701.t1
chr3.1	exon	38126727	38126793	38126727	ID=MS.gene82701.t1.exon2;Parent=MS.gene82701.t1
chr3.1	CDS	38126727	38126793	38126727	ID=cds.MS.gene82701.t1;Parent=MS.gene82701.t1
chr3.1	exon	38127110	38127182	38127110	ID=MS.gene82701.t1.exon3;Parent=MS.gene82701.t1
chr3.1	CDS	38127110	38127182	38127110	ID=cds.MS.gene82701.t1;Parent=MS.gene82701.t1
chr3.1	exon	38127431	38127714	38127431	ID=MS.gene82701.t1.exon4;Parent=MS.gene82701.t1
chr3.1	CDS	38127431	38127714	38127431	ID=cds.MS.gene82701.t1;Parent=MS.gene82701.t1

Gene Sequence

>MS.gene82701

ATGGTCGTTCAGGTGCCTAATAGTAGTGAAGACAAAACTTATTGGAATGACCTGTTTGCTAGAGAGTATGTTAATCAAGAAAAGTGTCTGTGAGTTGTTTTTGAATTCATAAACTCGTTCTCCCAAAAGGTTTGATGCGCATAAACCTTTTAAAACCTTGGTTCAGTGTTGTTAAGTAACCGGTAGCACCGCTATACTGCTGTTACATATCGGGATTTGGAGCAACCTTGATGAAAGACGATATGATATTGCGATTCCGCTATCACTGCAATAGCAGTGCTTTTTGCATATCGGTGATATCCATTATTGCTTAAATAGCGGAAGTTTCTGTTTTGTATGCTTTTTTTCCCTAAGAATAACCTTAAAATATCATGTGAGCTGAACTGTTTTCAAAATCATTAAAATAAAATAATATTGAGTCGGTGTTGAGATGGGGTCTTATATAACCCCACTAGCTAGGTAACCTCTCATCACTAAACAACCTTTGCCTCTCCATCTTACCTCTTCGCGTCATAATTCATCTCCTTCAAGACATTGATTCTGATGATTCCATTTAAGAAGTTGAAAAATATACCTCGCTATCGCAAAATGAGGATAATGATTATGTTAGGAGATAGGGAAATAATTAGATCTTTTTATCTTTTCACACTAAATAGAACTACCGGTTATTAGTTGTACTGAACTATTTGGATTTTGAGTCTTAAGTCACTTCTAATTTTTGTTTCTGGTTTTTCAGTAGCAATGTATACAACTATGCATCATGCTTTATTAGTTGTTTGAGCTATTGAGATTTTGAGTTTTATGTCGGTCACTTTTTTATTTCTGTTGATGCTTCTTTTTATATACAATTACTTATATCAACCACTTTGTGGTTTCCGCTATTTGCCCGCTACGCTATCCGCTATTTTCCGCGATCCGTTATTAATCACACTGTCTTGGTTATATGTTAATGTTTATTTCACAAGTGGCTGATTATTTTCATTTTAAAAATTAGTAAATCGGGCAAACAGTTTCTTGATTTATAGCGAGACATGTTTTGTTTTTTAACCTAATAATGACTCATTTGTATGCCTTTGATGCAATGTCTCAATGCTGTATTCCCTGTTCTTTTAGCAGCATTTAGTATTGATTCTATGACTTGTGGTCTCTATCAGAAATGAGACTCTTGTCTTATTGTATTTGGCTTCTAAGTCAACCACATTTGCGTATTTAACCATTTTGGTGATGAGTCATAGTTCCATTACAATATCTCATTCTTTGAGTAAGGATTCAGTTTGAATTTAAACAATGATACAACAAAGGACAGGTGAATGTGGTCAAATAGTCATCCTCTAGAATTGGTTTAAGTCATATGAAGCATCGACATAGACACAGGCACAACATTGAAACGTAGATACCAATAATAATTTAAGGAAATAGAAGTGATTTAATGTAACCACATGTTTTGTGTTGGTGTCCGACTCTAACTCGTGTCAGACTCCGAACACACCTTTAATCCTAAGTGTTGATGCTACATATAACCCTTTTGCTATTATAGAAGGGAAGGTGGTACTGTAGAGCTGTTGCTGTAGTGGGATCCTATGAAGGGTTGGATCAGTTACAGATCTATTGTAGGCAGTCTTACTAACATTCGCAAGAGATTGAGTTCATGACTCGAACCCGTAATATCTTGTTACACTGCAGCCCTCTAACTTTTGTGCTGTTATGAAGGAAAAGAGAGGAAAAAAAAACCATTTCAAACTTTTTGGTTTAAACTAGAATTTAGTTTCCCCAGATTTATTTTAACATGAATATAACATATTGTAAGAATTTTTTTTCCTATTAAAACAATGAAGTGGTTTTGAATGCTTTGATGTAGGTGCTGAAGTTGCTGTTCTTTGCATAACCAAGTCCGGCGAAGTTCTAAATTATCAGGCATTTACAGATGCTAAGGGGATATACACAGTAGCTGAGACAATGCCCGAGAGTGATCGTTGGGATGCATGTCTTGCTCGACCAATCAGTAGTTTCCATGAGCACTGCACTCGTCTTGGTGGTGGTAGTTCGGGTATTAAATTCAGTTACAATCATCCATCGGGGTACTCACATGCTGTCAGAACCTTTGTTTACCAACCTGTCAATGTTCCAACATACTGCATCTGA

Protein sequence

>MS.gene82701.t1

MVVQVPNSSEDKTYWNDLFAREYVNQEKCLNETLVLLYLASKSTTFAYLTILKGRWYCRAVAVVGSYEGLDQLQIYCAEVAVLCITKSGEVLNYQAFTDAKGIYTVAETMPESDRWDACLARPISSFHEHCTRLGGGSSGIKFSYNHPSGYSHAVRTFVYQPVNVPTYCI