Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82701.t1 | XP_003600045.1 | 71 | 145 | 40 | 1 | 26 | 170 | 5 | 147 | 8.60E-49 | 203.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82701.t1 | G7IXJ5 | 71.0 | 145 | 40 | 1 | 26 | 170 | 5 | 147 | 6.2e-49 | 203.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene82701 | 0.81773 | 2.83E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene82701 | 0.833888 | 4.12E-56 | -1.69E-46 |
| MS.gene049585 | MS.gene82701 | 0.802692 | 4.97E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene82701 | 0.803667 | 3.12E-49 | -1.69E-46 |
| MS.gene050273 | MS.gene82701 | 0.822559 | 2.22E-53 | -1.69E-46 |
| MS.gene050780 | MS.gene82701 | 0.819134 | 1.36E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene82701 | 0.832025 | 1.20E-55 | -1.69E-46 |
| MS.gene050826 | MS.gene82701 | 0.808546 | 2.94E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene82701 | 0.827693 | 1.36E-54 | -1.69E-46 |
| MS.gene051247 | MS.gene82701 | 0.824583 | 7.46E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene82701 | 0.829388 | 5.29E-55 | -1.69E-46 |
| MS.gene051574 | MS.gene82701 | 0.803486 | 3.41E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene82701 | 0.815108 | 1.09E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene82701 | 0.816932 | 4.29E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene82701 | 0.83352 | 5.09E-56 | -1.69E-46 |
| MS.gene052037 | MS.gene82701 | 0.830091 | 3.57E-55 | -1.69E-46 |
| MS.gene052056 | MS.gene82701 | -0.814183 | 1.75E-51 | -1.69E-46 |
| MS.gene052239 | MS.gene82701 | -0.816621 | 5.03E-52 | -1.69E-46 |
| MS.gene052323 | MS.gene82701 | 0.812459 | 4.20E-51 | -1.69E-46 |
| MS.gene052447 | MS.gene82701 | 0.82279 | 1.96E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene82701 | 0.804084 | 2.56E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene82701 | 0.806784 | 6.95E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene82701 | 0.804222 | 2.40E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene82701 | 0.80781 | 4.21E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene82701 | 0.821314 | 4.31E-53 | -1.69E-46 |
| MS.gene053164 | MS.gene82701 | 0.804306 | 2.30E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene82701 | 0.810945 | 8.96E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene82701 | 0.801908 | 7.21E-49 | -1.69E-46 |
| MS.gene053565 | MS.gene82701 | 0.807699 | 4.45E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene82701 | 0.836276 | 1.03E-56 | -1.69E-46 |
| MS.gene05423 | MS.gene82701 | 0.840623 | 7.78E-58 | -1.69E-46 |
| MS.gene054291 | MS.gene82701 | -0.815256 | 1.01E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene82701 | 0.816244 | 6.11E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene82701 | 0.804577 | 2.02E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene82701 | 0.813741 | 2.20E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene82701 | 0.802584 | 5.23E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene82701 | 0.818259 | 2.15E-52 | -1.69E-46 |
| MS.gene054775 | MS.gene82701 | 0.820117 | 8.13E-53 | -1.69E-46 |
| MS.gene055227 | MS.gene82701 | 0.818747 | 1.67E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene82701 | 0.816018 | 6.86E-52 | -1.69E-46 |
| MS.gene055357 | MS.gene82701 | 0.811473 | 6.88E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene82701 | 0.814393 | 1.58E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene82701 | 0.808656 | 2.78E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene82701 | 0.829676 | 4.51E-55 | -1.69E-46 |
| MS.gene056173 | MS.gene82701 | 0.810358 | 1.20E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene82701 | 0.828031 | 1.13E-54 | -1.69E-46 |
| MS.gene056366 | MS.gene82701 | 0.83876 | 2.37E-57 | -1.69E-46 |
| MS.gene056792 | MS.gene82701 | 0.816857 | 4.45E-52 | -1.69E-46 |
| MS.gene057021 | MS.gene82701 | 0.803994 | 2.67E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene82701 | 0.832075 | 1.16E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene82701 | 0.800131 | 1.66E-48 | -1.69E-46 |
| MS.gene058294 | MS.gene82701 | 0.805622 | 1.22E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene82701 | 0.810987 | 8.77E-51 | -1.69E-46 |
| MS.gene058636 | MS.gene82701 | 0.805643 | 1.21E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene82701 | 0.814587 | 1.43E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene82701 | 0.828739 | 7.60E-55 | -1.69E-46 |
| MS.gene059625 | MS.gene82701 | 0.810621 | 1.05E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene82701 | 0.810562 | 1.08E-50 | -1.69E-46 |
| MS.gene060373 | MS.gene82701 | 0.826072 | 3.31E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene82701 | 0.800304 | 1.53E-48 | -1.69E-46 |
| MS.gene060634 | MS.gene82701 | -0.82465 | 7.20E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82701.t1 | MTR_3g051110 | 71.034 | 145 | 40 | 1 | 26 | 170 | 5 | 147 | 2.68e-69 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82701.t1 | AT5G54855 | 56.618 | 136 | 57 | 1 | 34 | 169 | 13 | 146 | 1.58e-48 | 154 |
Find 40 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCTTGTCTTATTGTATT+TGG | 0.139867 | 3.1:+38126733 | MS.gene82701:CDS |
| ATTTGCGTATTTAACCATTT+TGG | 0.227305 | 3.1:+38126772 | MS.gene82701:CDS |
| GTAGTGAAGACAAAACTTAT+TGG | 0.306815 | 3.1:+38125595 | MS.gene82701:CDS |
| TGGTTTCCACATGGTCGTTC+AGG | 0.324147 | 3.1:+38125563 | None:intergenic |
| TCGTCTTGGTGGTGGTAGTT+CGG | 0.336867 | 3.1:+38127597 | MS.gene82701:CDS |
| CGGCGAAGTTCTAAATTATC+AGG | 0.338733 | 3.1:+38127465 | MS.gene82701:CDS |
| CGTCTTGGTGGTGGTAGTTC+GGG | 0.342385 | 3.1:+38127598 | MS.gene82701:CDS |
| ACTATGACTCATCACCAAAA+TGG | 0.362381 | 3.1:-38126786 | None:intergenic |
| ATTTAGAACTTCGCCGGACT+TGG | 0.414951 | 3.1:-38127458 | None:intergenic |
| TTCAGTTACAATCATCCATC+GGG | 0.416663 | 3.1:+38127628 | MS.gene82701:CDS |
| TAACTGATCCAACCCTTCAT+AGG | 0.416799 | 3.1:-38127150 | None:intergenic |
| CATGAGCACTGCACTCGTCT+TGG | 0.451233 | 3.1:+38127583 | MS.gene82701:CDS |
| CTGTAGAGCTGTTGCTGTAG+TGG | 0.454408 | 3.1:+38127124 | MS.gene82701:CDS |
| TAACATACTCTCTAGCAAAC+AGG | 0.476344 | 3.1:-38125623 | None:intergenic |
| TCAGGCATTTACAGATGCTA+AGG | 0.492192 | 3.1:+38127483 | MS.gene82701:CDS |
| CAGTATGTTGGAACATTGAC+AGG | 0.497172 | 3.1:-38127685 | None:intergenic |
| GTTCTTTGCATAACCAAGTC+CGG | 0.497448 | 3.1:+38127445 | MS.gene82701:CDS |
| CAAGACGAGTGCAGTGCTCA+TGG | 0.501517 | 3.1:-38127582 | None:intergenic |
| AATGCCCGAGAGTGATCGTT+GGG | 0.504720 | 3.1:+38127528 | MS.gene82701:CDS |
| TGCATCCCAACGATCACTCT+CGG | 0.507480 | 3.1:-38127533 | None:intergenic |
| TGTAGAGCTGTTGCTGTAGT+GGG | 0.512682 | 3.1:+38127125 | MS.gene82701:CDS |
| GCTGTAGTGGGATCCTATGA+AGG | 0.513702 | 3.1:+38127137 | MS.gene82701:CDS |
| TGCTCATGGAAACTACTGAT+TGG | 0.530403 | 3.1:-38127568 | None:intergenic |
| CAGGCATTTACAGATGCTAA+GGG | 0.533023 | 3.1:+38127484 | MS.gene82701:CDS |
| GAGCACTGCACTCGTCTTGG+TGG | 0.534296 | 3.1:+38127586 | MS.gene82701:CDS |
| CTGATAATTTAGAACTTCGC+CGG | 0.538086 | 3.1:-38127464 | None:intergenic |
| CACTGCACTCGTCTTGGTGG+TGG | 0.544640 | 3.1:+38127589 | MS.gene82701:CDS |
| ATTCAGTTACAATCATCCAT+CGG | 0.553429 | 3.1:+38127627 | MS.gene82701:CDS |
| GCATCCCAACGATCACTCTC+GGG | 0.561902 | 3.1:-38127532 | None:intergenic |
| TGCTATTATAGAAGGGAAGG+TGG | 0.573567 | 3.1:+38127099 | MS.gene82701:intron |
| CAATGCCCGAGAGTGATCGT+TGG | 0.575843 | 3.1:+38127527 | MS.gene82701:CDS |
| ATATATCAGATGCAGTATGT+TGG | 0.578522 | 3.1:-38127697 | None:intergenic |
| AATGGTTAAATACGCAAATG+TGG | 0.598016 | 3.1:-38126768 | None:intergenic |
| AGTGGGATCCTATGAAGGGT+TGG | 0.600492 | 3.1:+38127142 | MS.gene82701:CDS |
| ATGTTGGAACATTGACAGGT+TGG | 0.603546 | 3.1:-38127681 | None:intergenic |
| ATTGACAGGTTGGTAAACAA+AGG | 0.608179 | 3.1:-38127671 | None:intergenic |
| CTGTAGTGGGATCCTATGAA+GGG | 0.629218 | 3.1:+38127138 | MS.gene82701:CDS |
| ACAGCATGTGAGTACCCCGA+TGG | 0.701199 | 3.1:-38127643 | None:intergenic |
| AGGCATTTACAGATGCTAAG+GGG | 0.710498 | 3.1:+38127485 | MS.gene82701:CDS |
| TCAGTTACAATCATCCATCG+GGG | 0.761110 | 3.1:+38127629 | MS.gene82701:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATAATATTGAGT+CGG | + | chr3.1:38125973-38125992 | MS.gene82701:intron | 10.0% |
| !!! | ATTTTAAAAATTAGTAAATC+GGG | + | chr3.1:38126553-38126572 | MS.gene82701:intron | 10.0% |
| !!! | CATTTTAAAAATTAGTAAAT+CGG | + | chr3.1:38126552-38126571 | MS.gene82701:intron | 10.0% |
| !! | ATTCATGTTAAAATAAATCT+GGG | - | chr3.1:38127345-38127364 | None:intergenic | 15.0% |
| !! | CTATTTCCTTAAATTATTAT+TGG | - | chr3.1:38126972-38126991 | None:intergenic | 15.0% |
| !! | TAGATACCAATAATAATTTA+AGG | + | chr3.1:38126963-38126982 | MS.gene82701:intron | 15.0% |
| !! | TATTCATGTTAAAATAAATC+TGG | - | chr3.1:38127346-38127365 | None:intergenic | 15.0% |
| !!! | ATATTTTAAGGTTATTCTTA+GGG | - | chr3.1:38125923-38125942 | None:intergenic | 15.0% |
| !!! | ATATTTTTCAACTTCTTAAA+TGG | - | chr3.1:38126125-38126144 | None:intergenic | 15.0% |
| !! | TTAAACCAAAAAGTTTGAAA+TGG | - | chr3.1:38127306-38127325 | None:intergenic | 20.0% |
| !! | TTCATGTTAAAATAAATCTG+GGG | - | chr3.1:38127344-38127363 | None:intergenic | 20.0% |
| !! | TTTAAACAATGATACAACAA+AGG | + | chr3.1:38126852-38126871 | MS.gene82701:intron | 20.0% |
| !!! | AAAAACCATTTCAAACTTTT+TGG | + | chr3.1:38127298-38127317 | MS.gene82701:intron | 20.0% |
| !!! | GATATTTTAAGGTTATTCTT+AGG | - | chr3.1:38125924-38125943 | None:intergenic | 20.0% |
| ! | AATATCTCATTCTTTGAGTA+AGG | + | chr3.1:38126817-38126836 | MS.gene82701:intron | 25.0% |
| ! | AATGATTATGTTAGGAGATA+GGG | + | chr3.1:38126169-38126188 | MS.gene82701:intron | 25.0% |
| ! | ATCCATTATTGCTTAAATAG+CGG | + | chr3.1:38125871-38125890 | MS.gene82701:intron | 25.0% |
| ! | ATGAGGATAATGATTATGTT+AGG | + | chr3.1:38126161-38126180 | MS.gene82701:intron | 25.0% |
| ! | ATTAGTTGTACTGAACTATT+TGG | + | chr3.1:38126240-38126259 | MS.gene82701:intron | 25.0% |
| ! | CAAAGAATGAGATATTGTAA+TGG | - | chr3.1:38126813-38126832 | None:intergenic | 25.0% |
| ! | CATACAAATGAGTCATTATT+AGG | - | chr3.1:38126623-38126642 | None:intergenic | 25.0% |
| ! | GTTAATGTTTATTTCACAAG+TGG | + | chr3.1:38126518-38126537 | MS.gene82701:intron | 25.0% |
| ! | TAATGATTATGTTAGGAGAT+AGG | + | chr3.1:38126168-38126187 | MS.gene82701:intron | 25.0% |
| ! | TTCCTATTAAAACAATGAAG+TGG | + | chr3.1:38127388-38127407 | MS.gene82701:intron | 25.0% |
| !! | ATTTGCGTATTTAACCATTT+TGG | + | chr3.1:38126772-38126791 | MS.gene82701:CDS | 25.0% |
| !!! | AACCACTTCATTGTTTTAAT+AGG | - | chr3.1:38127393-38127412 | None:intergenic | 25.0% |
| !!! | TCACTTCTAATTTTTGTTTC+TGG | + | chr3.1:38126278-38126297 | MS.gene82701:intron | 25.0% |
| !!! | TGAGATTTTGAGTTTTATGT+CGG | + | chr3.1:38126358-38126377 | MS.gene82701:intron | 25.0% |
| AATGGTTAAATACGCAAATG+TGG | - | chr3.1:38126771-38126790 | None:intergenic | 30.0% | |
| AGTTCAGTACAACTAATAAC+CGG | - | chr3.1:38126237-38126256 | None:intergenic | 30.0% | |
| ATAACAGCACAAAAGTTAGA+GGG | - | chr3.1:38127259-38127278 | None:intergenic | 30.0% | |
| ATCAGTTACAGATCTATTGT+AGG | + | chr3.1:38127165-38127184 | MS.gene82701:intron | 30.0% | |
| ATGACTTAAACCAATTCTAG+AGG | - | chr3.1:38126904-38126923 | None:intergenic | 30.0% | |
| ATTCAGTTACAATCATCCAT+CGG | + | chr3.1:38127627-38127646 | MS.gene82701:CDS | 30.0% | |
| CAAGACAGTGTGATTAATAA+CGG | - | chr3.1:38126491-38126510 | None:intergenic | 30.0% | |
| GTAGTGAAGACAAAACTTAT+TGG | + | chr3.1:38125595-38125614 | MS.gene82701:CDS | 30.0% | |
| TAAATGCTGCTAAAAGAACA+GGG | - | chr3.1:38126675-38126694 | None:intergenic | 30.0% | |
| TACTTATATCAACCACTTTG+TGG | + | chr3.1:38126422-38126441 | MS.gene82701:intron | 30.0% | |
| TATATGTAGCATCAACACTT+AGG | - | chr3.1:38127072-38127091 | None:intergenic | 30.0% | |
| TATCATATCGTCTTTCATCA+AGG | - | chr3.1:38125801-38125820 | None:intergenic | 30.0% | |
| TCCCTTCTATAATAGCAAAA+GGG | - | chr3.1:38127096-38127115 | None:intergenic | 30.0% | |
| TGCAGTGTAACAAGATATTA+CGG | - | chr3.1:38127235-38127254 | None:intergenic | 30.0% | |
| TTCACACTAAATAGAACTAC+CGG | + | chr3.1:38126215-38126234 | MS.gene82701:intron | 30.0% | |
| TTCCCTTCTATAATAGCAAA+AGG | - | chr3.1:38127097-38127116 | None:intergenic | 30.0% | |
| TTCCGCTATTTAAGCAATAA+TGG | - | chr3.1:38125876-38125895 | None:intergenic | 30.0% | |
| ! | GACTCTTGTCTTATTGTATT+TGG | + | chr3.1:38126733-38126752 | MS.gene82701:CDS | 30.0% |
| ! | GTTTTGTCTTCACTACTATT+AGG | - | chr3.1:38125591-38125610 | None:intergenic | 30.0% |
| ! | TCAGCTCACATGATATTTTA+AGG | - | chr3.1:38125935-38125954 | None:intergenic | 30.0% |
| !! | AAATAGTCATCCTCTAGAAT+TGG | + | chr3.1:38126891-38126910 | MS.gene82701:intron | 30.0% |
| !! | AGTATTGATTCTATGACTTG+TGG | + | chr3.1:38126694-38126713 | MS.gene82701:intron | 30.0% |
| !! | TAACTTTTGTGCTGTTATGA+AGG | + | chr3.1:38127261-38127280 | MS.gene82701:intron | 30.0% |
| !!! | AACCCTTTTGCTATTATAGA+AGG | + | chr3.1:38127091-38127110 | MS.gene82701:intron | 30.0% |
| !!! | ACCCTTTTGCTATTATAGAA+GGG | + | chr3.1:38127092-38127111 | MS.gene82701:intron | 30.0% |
| !!! | GCATAAACCTTTTAAAACCT+TGG | + | chr3.1:38125711-38125730 | MS.gene82701:intron | 30.0% |
| !!! | TTTTGCTATTATAGAAGGGA+AGG | + | chr3.1:38127096-38127115 | MS.gene82701:intron | 30.0% |
| AAAGGTTGTTTAGTGATGAG+AGG | - | chr3.1:38126039-38126058 | None:intergenic | 35.0% | |
| ACAATGATACAACAAAGGAC+AGG | + | chr3.1:38126857-38126876 | MS.gene82701:intron | 35.0% | |
| ACTATGACTCATCACCAAAA+TGG | - | chr3.1:38126789-38126808 | None:intergenic | 35.0% | |
| CATAACAGCACAAAAGTTAG+AGG | - | chr3.1:38127260-38127279 | None:intergenic | 35.0% | |
| CATCAGAATCAATGTCTTGA+AGG | - | chr3.1:38126099-38126118 | None:intergenic | 35.0% | |
| CGTTATTAATCACACTGTCT+TGG | + | chr3.1:38126489-38126508 | MS.gene82701:intron | 35.0% | |
| CTAAATGCTGCTAAAAGAAC+AGG | - | chr3.1:38126676-38126695 | None:intergenic | 35.0% | |
| CTATACTGCTGTTACATATC+GGG | + | chr3.1:38125764-38125783 | MS.gene82701:intron | 35.0% | |
| GATATGTAACAGCAGTATAG+CGG | - | chr3.1:38125764-38125783 | None:intergenic | 35.0% | |
| GCAGTGTAACAAGATATTAC+GGG | - | chr3.1:38127234-38127253 | None:intergenic | 35.0% | |
| GCATCAACACTTAGGATTAA+AGG | - | chr3.1:38127064-38127083 | None:intergenic | 35.0% | |
| GCTATACTGCTGTTACATAT+CGG | + | chr3.1:38125763-38125782 | MS.gene82701:intron | 35.0% | |
| TAACATACTCTCTAGCAAAC+AGG | - | chr3.1:38125626-38125645 | None:intergenic | 35.0% | |
| TACTTAACAACACTGAACCA+AGG | - | chr3.1:38125731-38125750 | None:intergenic | 35.0% | |
| TTCAGTTACAATCATCCATC+GGG | + | chr3.1:38127628-38127647 | MS.gene82701:CDS | 35.0% | |
| ! | CTGATAATTTAGAACTTCGC+CGG | - | chr3.1:38127467-38127486 | None:intergenic | 35.0% |
| ! | CTTAGGATTAAAGGTGTGTT+CGG | - | chr3.1:38127055-38127074 | None:intergenic | 35.0% |
| ! | GTTCAGTGTTGTTAAGTAAC+CGG | + | chr3.1:38125733-38125752 | MS.gene82701:intron | 35.0% |
| ! | TGTAACCACATGTTTTGTGT+TGG | + | chr3.1:38127003-38127022 | MS.gene82701:intron | 35.0% |
| ! | TTATGCGCATCAAACCTTTT+GGG | - | chr3.1:38125697-38125716 | None:intergenic | 35.0% |
| ! | TTTATGCGCATCAAACCTTT+TGG | - | chr3.1:38125698-38125717 | None:intergenic | 35.0% |
| !! | ATTGACAGGTTGGTAAACAA+AGG | - | chr3.1:38127674-38127693 | None:intergenic | 35.0% |
| !! | TAGCAGTGCTTTTTGCATAT+CGG | + | chr3.1:38125844-38125863 | MS.gene82701:intron | 35.0% |
| !!! | CACTGAACCAAGGTTTTAAA+AGG | - | chr3.1:38125721-38125740 | None:intergenic | 35.0% |
| !!! | GGTTTTGAATGCTTTGATGT+AGG | + | chr3.1:38127409-38127428 | MS.gene82701:intron | 35.0% |
| AGATGAATTATGACGCGAAG+AGG | - | chr3.1:38126076-38126095 | None:intergenic | 40.0% | |
| AGGCATTTACAGATGCTAAG+GGG | + | chr3.1:38127485-38127504 | MS.gene82701:CDS | 40.0% | |
| ATGTTGGAACATTGACAGGT+TGG | - | chr3.1:38127684-38127703 | None:intergenic | 40.0% | |
| CAGGCATTTACAGATGCTAA+GGG | + | chr3.1:38127484-38127503 | MS.gene82701:CDS | 40.0% | |
| CAGTATGTTGGAACATTGAC+AGG | - | chr3.1:38127688-38127707 | None:intergenic | 40.0% | |
| CATAAACTCGTTCTCCCAAA+AGG | + | chr3.1:38125680-38125699 | MS.gene82701:intron | 40.0% | |
| CTTATATAACCCCACTAGCT+AGG | + | chr3.1:38126010-38126029 | MS.gene82701:intron | 40.0% | |
| GCATTGAGACATTGCATCAA+AGG | - | chr3.1:38126646-38126665 | None:intergenic | 40.0% | |
| GCTGTTATGAAGGAAAAGAG+AGG | + | chr3.1:38127271-38127290 | MS.gene82701:intron | 40.0% | |
| GTTCTTTGCATAACCAAGTC+CGG | + | chr3.1:38127445-38127464 | MS.gene82701:CDS | 40.0% | |
| TAACTGATCCAACCCTTCAT+AGG | - | chr3.1:38127153-38127172 | None:intergenic | 40.0% | |
| TCAGGCATTTACAGATGCTA+AGG | + | chr3.1:38127483-38127502 | MS.gene82701:CDS | 40.0% | |
| TCAGTTACAATCATCCATCG+GGG | + | chr3.1:38127629-38127648 | MS.gene82701:CDS | 40.0% | |
| TGCTATTATAGAAGGGAAGG+TGG | + | chr3.1:38127099-38127118 | MS.gene82701:intron | 40.0% | |
| TGCTCATGGAAACTACTGAT+TGG | - | chr3.1:38127571-38127590 | None:intergenic | 40.0% | |
| TGCTGTTACATATCGGGATT+TGG | + | chr3.1:38125770-38125789 | MS.gene82701:intron | 40.0% | |
| ! | AAATAGCGGAAACCACAAAG+TGG | - | chr3.1:38126437-38126456 | None:intergenic | 40.0% |
| !! | ATATTGAGTCGGTGTTGAGA+TGG | + | chr3.1:38125984-38126003 | MS.gene82701:intron | 40.0% |
| !! | CGGCGAAGTTCTAAATTATC+AGG | + | chr3.1:38127465-38127484 | MS.gene82701:CDS | 40.0% |
| !! | GTGTGATTAATAACGGATCG+CGG | - | chr3.1:38126484-38126503 | None:intergenic | 40.0% |
| !! | TATTGAGTCGGTGTTGAGAT+GGG | + | chr3.1:38125985-38126004 | MS.gene82701:intron | 40.0% |
| AGTCTGACACGAGTTAGAGT+CGG | - | chr3.1:38127032-38127051 | None:intergenic | 45.0% | |
| ATGAGAGGTTACCTAGCTAG+TGG | - | chr3.1:38126024-38126043 | None:intergenic | 45.0% | |
| CAACAAAGGACAGGTGAATG+TGG | + | chr3.1:38126866-38126885 | MS.gene82701:intron | 45.0% | |
| CACTGCTATTGCAGTGATAG+CGG | - | chr3.1:38125832-38125851 | None:intergenic | 45.0% | |
| GGACACCAACACAAAACATG+TGG | - | chr3.1:38127011-38127030 | None:intergenic | 45.0% | |
| TACCTCGCTATCGCAAAATG+AGG | + | chr3.1:38126144-38126163 | MS.gene82701:intron | 45.0% | |
| TATGACGCGAAGAGGTAAGA+TGG | - | chr3.1:38126068-38126087 | None:intergenic | 45.0% | |
| TGAGAGGTTACCTAGCTAGT+GGG | - | chr3.1:38126023-38126042 | None:intergenic | 45.0% | |
| TGTAGAGCTGTTGCTGTAGT+GGG | + | chr3.1:38127125-38127144 | MS.gene82701:CDS | 45.0% | |
| ! | ATCCTCATTTTGCGATAGCG+AGG | - | chr3.1:38126149-38126168 | None:intergenic | 45.0% |
| ! | ATTTAGAACTTCGCCGGACT+TGG | - | chr3.1:38127461-38127480 | None:intergenic | 45.0% |
| ! | CTGTAGTGGGATCCTATGAA+GGG | + | chr3.1:38127138-38127157 | MS.gene82701:CDS | 45.0% |
| ! | TAACGGATCGCGGAAAATAG+CGG | - | chr3.1:38126474-38126493 | None:intergenic | 45.0% |
| !! | AAAATAGCGGATAGCGTAGC+GGG | - | chr3.1:38126461-38126480 | None:intergenic | 45.0% |
| !! | ATTGAGTCGGTGTTGAGATG+GGG | + | chr3.1:38125986-38126005 | MS.gene82701:intron | 45.0% |
| !! | GAAAATAGCGGATAGCGTAG+CGG | - | chr3.1:38126462-38126481 | None:intergenic | 45.0% |
| !! | TGAAGCATCGACATAGACAC+AGG | + | chr3.1:38126925-38126944 | MS.gene82701:intron | 45.0% |
| AATGCCCGAGAGTGATCGTT+GGG | + | chr3.1:38127528-38127547 | MS.gene82701:CDS | 50.0% | |
| AGTGGGATCCTATGAAGGGT+TGG | + | chr3.1:38127142-38127161 | MS.gene82701:CDS | 50.0% | |
| CTGTAGAGCTGTTGCTGTAG+TGG | + | chr3.1:38127124-38127143 | MS.gene82701:CDS | 50.0% | |
| GAGAGGTTACCTAGCTAGTG+GGG | - | chr3.1:38126022-38126041 | None:intergenic | 50.0% | |
| GAGGTAAGATGGAGAGGCAA+AGG | - | chr3.1:38126057-38126076 | None:intergenic | 50.0% | |
| TGCATCCCAACGATCACTCT+CGG | - | chr3.1:38127536-38127555 | None:intergenic | 50.0% | |
| ! | GCTGTAGTGGGATCCTATGA+AGG | + | chr3.1:38127137-38127156 | MS.gene82701:CDS | 50.0% |
| !! | ATAGCGTAGCGGGCAAATAG+CGG | - | chr3.1:38126451-38126470 | None:intergenic | 50.0% |
| !! | TCGTCTTGGTGGTGGTAGTT+CGG | + | chr3.1:38127597-38127616 | MS.gene82701:CDS | 50.0% |
| ACAGCATGTGAGTACCCCGA+TGG | - | chr3.1:38127646-38127665 | None:intergenic | 55.0% | |
| CAAGACGAGTGCAGTGCTCA+TGG | - | chr3.1:38127585-38127604 | None:intergenic | 55.0% | |
| CAATGCCCGAGAGTGATCGT+TGG | + | chr3.1:38127527-38127546 | MS.gene82701:CDS | 55.0% | |
| CGCGAAGAGGTAAGATGGAG+AGG | - | chr3.1:38126063-38126082 | None:intergenic | 55.0% | |
| GCATCCCAACGATCACTCTC+GGG | - | chr3.1:38127535-38127554 | None:intergenic | 55.0% | |
| ! | CATGAGCACTGCACTCGTCT+TGG | + | chr3.1:38127583-38127602 | MS.gene82701:CDS | 55.0% |
| !! | CAGCAGTATAGCGGTGCTAC+CGG | - | chr3.1:38125755-38125774 | None:intergenic | 55.0% |
| !! | CGTCTTGGTGGTGGTAGTTC+GGG | + | chr3.1:38127598-38127617 | MS.gene82701:CDS | 55.0% |
| CACTGCACTCGTCTTGGTGG+TGG | + | chr3.1:38127589-38127608 | MS.gene82701:CDS | 60.0% | |
| ! | GAGCACTGCACTCGTCTTGG+TGG | + | chr3.1:38127586-38127605 | MS.gene82701:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 38125573 | 38127714 | 38125573 | ID=MS.gene82701 |
| chr3.1 | mRNA | 38125573 | 38127714 | 38125573 | ID=MS.gene82701.t1;Parent=MS.gene82701 |
| chr3.1 | exon | 38125573 | 38125661 | 38125573 | ID=MS.gene82701.t1.exon1;Parent=MS.gene82701.t1 |
| chr3.1 | CDS | 38125573 | 38125661 | 38125573 | ID=cds.MS.gene82701.t1;Parent=MS.gene82701.t1 |
| chr3.1 | exon | 38126727 | 38126793 | 38126727 | ID=MS.gene82701.t1.exon2;Parent=MS.gene82701.t1 |
| chr3.1 | CDS | 38126727 | 38126793 | 38126727 | ID=cds.MS.gene82701.t1;Parent=MS.gene82701.t1 |
| chr3.1 | exon | 38127110 | 38127182 | 38127110 | ID=MS.gene82701.t1.exon3;Parent=MS.gene82701.t1 |
| chr3.1 | CDS | 38127110 | 38127182 | 38127110 | ID=cds.MS.gene82701.t1;Parent=MS.gene82701.t1 |
| chr3.1 | exon | 38127431 | 38127714 | 38127431 | ID=MS.gene82701.t1.exon4;Parent=MS.gene82701.t1 |
| chr3.1 | CDS | 38127431 | 38127714 | 38127431 | ID=cds.MS.gene82701.t1;Parent=MS.gene82701.t1 |
| Gene Sequence |
| Protein sequence |
