Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90876.t1 | XP_013470410.1 | 98.5 | 205 | 3 | 0 | 3 | 207 | 6 | 210 | 1.00E-75 | 293.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90876.t1 | Q8LDF9 | 62.1 | 169 | 54 | 4 | 4 | 165 | 15 | 180 | 1.3e-26 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90876.t1 | A0A072VSQ8 | 98.5 | 205 | 3 | 0 | 3 | 207 | 6 | 210 | 7.2e-76 | 293.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90876.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene90876 | 0.80068 | 1.29E-48 | -1.69E-46 |
| MS.gene049596 | MS.gene90876 | 0.831562 | 1.56E-55 | -1.69E-46 |
| MS.gene049622 | MS.gene90876 | 0.840773 | 7.10E-58 | -1.69E-46 |
| MS.gene049697 | MS.gene90876 | 0.801943 | 7.09E-49 | -1.69E-46 |
| MS.gene04972 | MS.gene90876 | 0.812638 | 3.83E-51 | -1.69E-46 |
| MS.gene04985 | MS.gene90876 | 0.856284 | 3.57E-62 | -1.69E-46 |
| MS.gene049989 | MS.gene90876 | 0.901345 | 2.94E-78 | -1.69E-46 |
| MS.gene050297 | MS.gene90876 | 0.893903 | 4.07E-75 | -1.69E-46 |
| MS.gene050648 | MS.gene90876 | 0.823841 | 1.11E-53 | -1.69E-46 |
| MS.gene051094 | MS.gene90876 | 0.811194 | 7.91E-51 | -1.69E-46 |
| MS.gene05124 | MS.gene90876 | 0.840687 | 7.48E-58 | -1.69E-46 |
| MS.gene051263 | MS.gene90876 | 0.866042 | 3.81E-65 | -1.69E-46 |
| MS.gene051478 | MS.gene90876 | 0.80971 | 1.65E-50 | -1.69E-46 |
| MS.gene051629 | MS.gene90876 | 0.860116 | 2.58E-63 | -1.69E-46 |
| MS.gene051742 | MS.gene90876 | 0.820805 | 5.65E-53 | -1.69E-46 |
| MS.gene051816 | MS.gene90876 | 0.844692 | 6.46E-59 | -1.69E-46 |
| MS.gene051896 | MS.gene90876 | 0.801015 | 1.10E-48 | -1.69E-46 |
| MS.gene051955 | MS.gene90876 | 0.842153 | 3.08E-58 | -1.69E-46 |
| MS.gene052143 | MS.gene90876 | 0.856103 | 4.03E-62 | -1.69E-46 |
| MS.gene052308 | MS.gene90876 | 0.852451 | 4.58E-61 | -1.69E-46 |
| MS.gene052367 | MS.gene90876 | 0.90536 | 4.66E-80 | -1.69E-46 |
| MS.gene052383 | MS.gene90876 | 0.804357 | 2.25E-49 | -1.69E-46 |
| MS.gene053035 | MS.gene90876 | 0.807596 | 4.68E-50 | -1.69E-46 |
| MS.gene053173 | MS.gene90876 | 0.876811 | 1.04E-68 | -1.69E-46 |
| MS.gene053348 | MS.gene90876 | 0.861389 | 1.06E-63 | -1.69E-46 |
| MS.gene053416 | MS.gene90876 | 0.884214 | 2.32E-71 | -1.69E-46 |
| MS.gene053417 | MS.gene90876 | 0.885675 | 6.63E-72 | -1.69E-46 |
| MS.gene05369 | MS.gene90876 | 0.81097 | 8.84E-51 | -1.69E-46 |
| MS.gene054551 | MS.gene90876 | 0.884288 | 2.18E-71 | -1.69E-46 |
| MS.gene054552 | MS.gene90876 | 0.802459 | 5.56E-49 | -1.69E-46 |
| MS.gene054593 | MS.gene90876 | 0.852447 | 4.59E-61 | -1.69E-46 |
| MS.gene054614 | MS.gene90876 | 0.807132 | 5.87E-50 | -1.69E-46 |
| MS.gene054643 | MS.gene90876 | 0.871547 | 6.29E-67 | -1.69E-46 |
| MS.gene054662 | MS.gene90876 | 0.81268 | 3.75E-51 | -1.69E-46 |
| MS.gene054885 | MS.gene90876 | 0.809207 | 2.12E-50 | -1.69E-46 |
| MS.gene055308 | MS.gene90876 | 0.873205 | 1.76E-67 | -1.69E-46 |
| MS.gene055411 | MS.gene90876 | 0.808243 | 3.41E-50 | -1.69E-46 |
| MS.gene055578 | MS.gene90876 | 0.883975 | 2.85E-71 | -1.69E-46 |
| MS.gene055579 | MS.gene90876 | 0.820334 | 7.25E-53 | -1.69E-46 |
| MS.gene055957 | MS.gene90876 | 0.925882 | 1.00E-90 | -1.69E-46 |
| MS.gene056041 | MS.gene90876 | 0.919994 | 2.24E-87 | -1.69E-46 |
| MS.gene056042 | MS.gene90876 | 0.865969 | 4.01E-65 | -1.69E-46 |
| MS.gene056228 | MS.gene90876 | 0.800415 | 1.46E-48 | -1.69E-46 |
| MS.gene056335 | MS.gene90876 | 0.849962 | 2.31E-60 | -1.69E-46 |
| MS.gene05640 | MS.gene90876 | 0.884145 | 2.46E-71 | -1.69E-46 |
| MS.gene056526 | MS.gene90876 | 0.848838 | 4.75E-60 | -1.69E-46 |
| MS.gene056528 | MS.gene90876 | 0.82616 | 3.16E-54 | -1.69E-46 |
| MS.gene057358 | MS.gene90876 | 0.802962 | 4.37E-49 | -1.69E-46 |
| MS.gene057367 | MS.gene90876 | 0.84479 | 6.08E-59 | -1.69E-46 |
| MS.gene057458 | MS.gene90876 | 0.887168 | 1.81E-72 | -1.69E-46 |
| MS.gene057483 | MS.gene90876 | 0.82746 | 1.55E-54 | -1.69E-46 |
| MS.gene058128 | MS.gene90876 | 0.834321 | 3.21E-56 | -1.69E-46 |
| MS.gene058196 | MS.gene90876 | 0.834512 | 2.87E-56 | -1.69E-46 |
| MS.gene058197 | MS.gene90876 | 0.83504 | 2.12E-56 | -1.69E-46 |
| MS.gene058198 | MS.gene90876 | 0.833343 | 5.63E-56 | -1.69E-46 |
| MS.gene058818 | MS.gene90876 | 0.854716 | 1.02E-61 | -1.69E-46 |
| MS.gene058827 | MS.gene90876 | 0.815028 | 1.14E-51 | -1.69E-46 |
| MS.gene058844 | MS.gene90876 | 0.840463 | 8.56E-58 | -1.69E-46 |
| MS.gene058849 | MS.gene90876 | 0.805648 | 1.21E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene90876 | 0.846641 | 1.91E-59 | -1.69E-46 |
| MS.gene059300 | MS.gene90876 | 0.860401 | 2.12E-63 | -1.69E-46 |
| MS.gene059553 | MS.gene90876 | 0.857711 | 1.35E-62 | -1.69E-46 |
| MS.gene060473 | MS.gene90876 | 0.891977 | 2.43E-74 | -1.69E-46 |
| MS.gene060565 | MS.gene90876 | 0.888922 | 3.84E-73 | -1.69E-46 |
| MS.gene06057 | MS.gene90876 | 0.875342 | 3.32E-68 | -1.69E-46 |
| MS.gene060825 | MS.gene90876 | 0.808646 | 2.80E-50 | -1.69E-46 |
| MS.gene06093 | MS.gene90876 | 0.884144 | 2.46E-71 | -1.69E-46 |
| MS.gene061099 | MS.gene90876 | 0.877477 | 6.09E-69 | -1.69E-46 |
| MS.gene061260 | MS.gene90876 | 0.895479 | 9.22E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90876.t1 | MTR_1g115220 | 98.544 | 206 | 3 | 0 | 2 | 207 | 5 | 210 | 6.84e-146 | 404 |
| MS.gene90876.t1 | MTR_8g018100 | 73.554 | 121 | 14 | 1 | 19 | 139 | 144 | 246 | 5.37e-51 | 165 |
| MS.gene90876.t1 | MTR_3g115580 | 61.798 | 89 | 34 | 0 | 86 | 174 | 32 | 120 | 2.23e-30 | 109 |
| MS.gene90876.t1 | MTR_5g024180 | 49.091 | 110 | 50 | 2 | 83 | 186 | 16 | 125 | 9.71e-28 | 102 |
| MS.gene90876.t1 | MTR_8g073345 | 44.737 | 114 | 58 | 1 | 83 | 191 | 16 | 129 | 3.88e-26 | 98.2 |
| MS.gene90876.t1 | MTR_8g073345 | 45.872 | 109 | 54 | 1 | 83 | 186 | 16 | 124 | 5.82e-26 | 98.2 |
| MS.gene90876.t1 | MTR_7g068280 | 60.811 | 74 | 29 | 0 | 95 | 168 | 47 | 120 | 2.44e-25 | 97.1 |
| MS.gene90876.t1 | MTR_4g094622 | 48.750 | 80 | 41 | 0 | 89 | 168 | 54 | 133 | 1.94e-20 | 84.0 |
| MS.gene90876.t1 | MTR_7g082820 | 51.351 | 74 | 35 | 1 | 95 | 168 | 9 | 81 | 1.82e-18 | 78.6 |
| MS.gene90876.t1 | MTR_5g024180 | 43.023 | 86 | 44 | 2 | 106 | 186 | 3 | 88 | 2.87e-14 | 66.2 |
| MS.gene90876.t1 | MTR_0191s0020 | 29.448 | 163 | 79 | 7 | 2 | 164 | 7 | 133 | 2.89e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90876.t1 | AT5G23420 | 54.167 | 168 | 67 | 5 | 4 | 164 | 15 | 179 | 6.74e-45 | 149 |
| MS.gene90876.t1 | AT4G35570 | 50.000 | 102 | 50 | 1 | 90 | 191 | 25 | 125 | 3.21e-28 | 103 |
| MS.gene90876.t1 | AT4G35570 | 50.000 | 102 | 50 | 1 | 90 | 191 | 25 | 125 | 3.21e-28 | 103 |
| MS.gene90876.t1 | AT2G17560 | 47.170 | 106 | 55 | 1 | 90 | 194 | 25 | 130 | 2.10e-26 | 99.0 |
| MS.gene90876.t1 | AT3G51880 | 47.826 | 115 | 54 | 2 | 94 | 207 | 48 | 157 | 3.48e-26 | 99.8 |
| MS.gene90876.t1 | AT2G17560 | 50.538 | 93 | 45 | 1 | 90 | 181 | 25 | 117 | 1.94e-25 | 96.7 |
| MS.gene90876.t1 | AT2G17560 | 50.538 | 93 | 45 | 1 | 90 | 181 | 25 | 117 | 1.94e-25 | 96.7 |
| MS.gene90876.t1 | AT1G20693 | 55.422 | 83 | 36 | 1 | 87 | 168 | 25 | 107 | 2.16e-25 | 96.7 |
| MS.gene90876.t1 | AT1G20693 | 53.535 | 99 | 42 | 3 | 87 | 182 | 25 | 122 | 2.42e-25 | 96.7 |
| MS.gene90876.t1 | AT1G20693 | 53.535 | 99 | 42 | 3 | 87 | 182 | 25 | 122 | 2.49e-25 | 96.7 |
| MS.gene90876.t1 | AT3G51880 | 47.619 | 105 | 50 | 1 | 94 | 198 | 48 | 147 | 1.18e-24 | 95.9 |
| MS.gene90876.t1 | AT3G51880 | 47.619 | 105 | 50 | 1 | 94 | 198 | 48 | 147 | 1.18e-24 | 95.9 |
| MS.gene90876.t1 | AT3G51880 | 47.619 | 105 | 50 | 1 | 94 | 198 | 48 | 147 | 1.18e-24 | 95.9 |
| MS.gene90876.t1 | AT3G51880 | 52.381 | 84 | 40 | 0 | 94 | 177 | 48 | 131 | 1.22e-24 | 95.1 |
| MS.gene90876.t1 | AT1G20696 | 53.922 | 102 | 43 | 3 | 83 | 182 | 20 | 119 | 2.02e-24 | 94.0 |
| MS.gene90876.t1 | AT1G20696 | 57.333 | 75 | 32 | 0 | 94 | 168 | 30 | 104 | 8.28e-24 | 92.8 |
| MS.gene90876.t1 | AT1G20696 | 57.333 | 75 | 32 | 0 | 94 | 168 | 30 | 104 | 8.30e-24 | 92.0 |
| MS.gene90876.t1 | AT2G34450 | 48.571 | 70 | 36 | 0 | 99 | 168 | 63 | 132 | 8.27e-19 | 79.7 |
| MS.gene90876.t1 | AT2G34450 | 48.571 | 70 | 36 | 0 | 99 | 168 | 63 | 132 | 8.27e-19 | 79.7 |
| MS.gene90876.t1 | AT2G34450 | 48.571 | 70 | 36 | 0 | 99 | 168 | 63 | 132 | 8.27e-19 | 79.7 |
| MS.gene90876.t1 | AT5G23420 | 61.667 | 60 | 22 | 1 | 4 | 62 | 15 | 74 | 3.28e-18 | 78.2 |
| MS.gene90876.t1 | AT2G34450 | 49.296 | 71 | 35 | 1 | 99 | 168 | 63 | 133 | 3.36e-17 | 75.5 |
| MS.gene90876.t1 | AT1G20696 | 46.154 | 78 | 39 | 2 | 107 | 182 | 1 | 77 | 3.63e-12 | 60.8 |
| MS.gene90876.t1 | AT1G20696 | 46.154 | 78 | 39 | 2 | 107 | 182 | 1 | 77 | 3.89e-12 | 60.8 |
Find 46 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGAGAAGAAGCCTTATT+TGG | 0.238707 | 1.4:+87298703 | MS.gene90876:intron |
| CTCTTAACATCCTTTGAATC+AGG | 0.239936 | 1.4:-87298431 | None:intergenic |
| TCAACAACCTTATCCAAATA+AGG | 0.266781 | 1.4:-87298716 | None:intergenic |
| CAAAAGAACCAAATGCAAAA+AGG | 0.273542 | 1.4:+87298206 | MS.gene90876:CDS |
| AGCGAAAGCACTGCCATCTT+TGG | 0.274022 | 1.4:-87297742 | None:intergenic |
| ATGGCAGTGCTTTCGCTAAA+TGG | 0.280098 | 1.4:+87297748 | MS.gene90876:CDS |
| TAAAGTTGGGAAAGGGAAAA+AGG | 0.356731 | 1.4:+87298231 | MS.gene90876:CDS |
| GGTGGACGCTTCGGCGCATT+AGG | 0.374547 | 1.4:-87298262 | None:intergenic |
| GAAGAAGCCTTATTTGGATA+AGG | 0.386677 | 1.4:+87298709 | MS.gene90876:CDS |
| TGCTGCTGCAGGAGAGGTGG+AGG | 0.407036 | 1.4:+87299042 | MS.gene90876:CDS |
| GTTACGAAATGGCAACGAAA+AGG | 0.426485 | 1.4:+87297676 | None:intergenic |
| TTACGAAATGGCAACGAAAA+GGG | 0.447058 | 1.4:+87297677 | None:intergenic |
| AGCTGCTGCTGCAGGAGAGG+TGG | 0.448405 | 1.4:+87299039 | MS.gene90876:CDS |
| AAAGCAGTTGGTGGACGCTT+CGG | 0.448751 | 1.4:-87298271 | None:intergenic |
| GACAAGGAAGCTGCTGCTGC+AGG | 0.462916 | 1.4:+87299031 | MS.gene90876:CDS |
| CTGATTCAAAGGATGTTAAG+AGG | 0.466487 | 1.4:+87298432 | MS.gene90876:CDS |
| TGCATGTCAATGAGTGCAAC+AGG | 0.479421 | 1.4:-87297878 | None:intergenic |
| GGGTTCTGATAAGGAAGATA+AGG | 0.479785 | 1.4:+87298994 | MS.gene90876:CDS |
| AAATAGGTTGGTAAGGAAGC+TGG | 0.492839 | 1.4:+87298547 | MS.gene90876:intron |
| GGATCAAGAGGGTTCTGATA+AGG | 0.494850 | 1.4:+87298985 | MS.gene90876:intron |
| GCCAAAATCAAAATGAATCT+CGG | 0.501868 | 1.4:+87297917 | MS.gene90876:CDS |
| GTTCTCGTTCGTGCCAAAGA+TGG | 0.507354 | 1.4:+87297729 | MS.gene90876:CDS |
| GTAAGGAAGCTGGTGAGAAG+TGG | 0.524391 | 1.4:+87298557 | MS.gene90876:CDS |
| CAGCTTCCTTGTCATCAGAC+TGG | 0.532712 | 1.4:-87299021 | None:intergenic |
| TCTTAACATCCTTTGAATCA+GGG | 0.535919 | 1.4:-87298430 | None:intergenic |
| GGATAAGGTTGTTGAACTGA+AGG | 0.538046 | 1.4:+87298724 | MS.gene90876:CDS |
| GAAGTGGAGGTCTCTGACTG+AGG | 0.540601 | 1.4:+87298573 | MS.gene90876:CDS |
| GGAAGCTAACCCTGATTCAA+AGG | 0.545294 | 1.4:+87298421 | MS.gene90876:CDS |
| ATGAAAACAAAGAAAGCAGT+TGG | 0.548460 | 1.4:-87298283 | None:intergenic |
| GGAAGCTGCTGCTGCAGGAG+AGG | 0.549573 | 1.4:+87299036 | MS.gene90876:CDS |
| AAAACAAAGAAAGCAGTTGG+TGG | 0.566440 | 1.4:-87298280 | None:intergenic |
| AGTTAACTGATGAAGAGTAG+TGG | 0.571245 | 1.4:+87299065 | MS.gene90876:CDS |
| AAAAGGGCTAAAGTTGGGAA+AGG | 0.581404 | 1.4:+87298223 | MS.gene90876:CDS |
| AGCAGCATTATACAATTCCA+TGG | 0.595262 | 1.4:-87298762 | None:intergenic |
| AGGAAGCTGGTGAGAAGTGG+AGG | 0.606568 | 1.4:+87298560 | MS.gene90876:CDS |
| GGCAGAATATGAGAAGGCCA+TGG | 0.615072 | 1.4:+87298745 | MS.gene90876:CDS |
| TGATTCAAAGGATGTTAAGA+GGG | 0.616338 | 1.4:+87298433 | MS.gene90876:CDS |
| AAAGGGCTAAAGTTGGGAAA+GGG | 0.618574 | 1.4:+87298224 | MS.gene90876:CDS |
| GCTGTATGTATAGGATCAAG+AGG | 0.620076 | 1.4:+87298973 | MS.gene90876:intron |
| TGAAGCGGAACGAGAATCGA+CGG | 0.630596 | 1.4:-87297706 | None:intergenic |
| GGCACGAACGAGAACTGAAG+CGG | 0.641201 | 1.4:-87297721 | None:intergenic |
| GGAAGGCCAGTCTGATGACA+AGG | 0.644830 | 1.4:+87299015 | MS.gene90876:CDS |
| TCTGATAAGGAAGATAAGGA+AGG | 0.664708 | 1.4:+87298998 | MS.gene90876:CDS |
| ACTGAAGGCAGAATATGAGA+AGG | 0.674706 | 1.4:+87298739 | MS.gene90876:CDS |
| CTGTATGTATAGGATCAAGA+GGG | 0.690024 | 1.4:+87298974 | MS.gene90876:intron |
| CTGAAGTGAAGAAACCCGAG+AGG | 0.719762 | 1.4:+87298073 | MS.gene90876:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATTAGTACTAATTA+GGG | - | chr1.4:87297966-87297985 | None:intergenic | 10.0% |
| !!! | GTATTTGATTTTATTTAATT+TGG | + | chr1.4:87298018-87298037 | MS.gene90876:intron | 10.0% |
| !!! | TTTATTTTTTGAAATATTGT+AGG | + | chr1.4:87298170-87298189 | MS.gene90876:intron | 10.0% |
| !! | AAAAAATCACAAACTAAAAT+TGG | - | chr1.4:87298112-87298131 | None:intergenic | 15.0% |
| !! | AAAAATCACAAACTAAAATT+GGG | - | chr1.4:87298111-87298130 | None:intergenic | 15.0% |
| !! | GATAATAATTAGTACTAATT+AGG | - | chr1.4:87297967-87297986 | None:intergenic | 15.0% |
| !! | TTACTTATATTGTGAAAAAT+AGG | + | chr1.4:87298531-87298550 | MS.gene90876:intron | 15.0% |
| !! | AAAATCACAAACTAAAATTG+GGG | - | chr1.4:87298110-87298129 | None:intergenic | 20.0% |
| !! | TGATATGGTTAAAATTGTTT+AGG | + | chr1.4:87298685-87298704 | MS.gene90876:intron | 20.0% |
| !! | TTATATTGTGAAAAATAGGT+TGG | + | chr1.4:87298535-87298554 | MS.gene90876:intron | 20.0% |
| !!! | TCTGGTTTTTATTAGTATTT+AGG | + | chr1.4:87298135-87298154 | MS.gene90876:intron | 20.0% |
| !!! | TGAGTTTAGAAAGATTTTTA+AGG | + | chr1.4:87298400-87298419 | MS.gene90876:CDS | 20.0% |
| !!! | TGTTTTGATTTGTTTTGATT+TGG | + | chr1.4:87298624-87298643 | MS.gene90876:intron | 20.0% |
| !!! | TTTTCACAATATAAGTAACA+TGG | - | chr1.4:87298529-87298548 | None:intergenic | 20.0% |
| ! | AAAAGAACCAAATGCAAAAA+GGG | + | chr1.4:87298207-87298226 | MS.gene90876:CDS | 25.0% |
| ! | AAATCACAAACTAAAATTGG+GGG | - | chr1.4:87298109-87298128 | None:intergenic | 25.0% |
| ! | GCTGATATAATGTTATGATA+TGG | + | chr1.4:87298670-87298689 | MS.gene90876:intron | 25.0% |
| ! | TGTTTGATTAAGTTATCCAA+GGG | + | chr1.4:87298492-87298511 | MS.gene90876:intron | 25.0% |
| ! | TTGTTTGATTAAGTTATCCA+AGG | + | chr1.4:87298491-87298510 | MS.gene90876:intron | 25.0% |
| !! | GAAAAAGAGTATAAACGAAA+TGG | - | chr1.4:87297799-87297818 | None:intergenic | 25.0% |
| !! | TGTTCTGTTTTGTAATGTTT+TGG | + | chr1.4:87298329-87298348 | MS.gene90876:intron | 25.0% |
| !!! | AGTGAAGCATGTTTTATTTT+GGG | + | chr1.4:87298891-87298910 | MS.gene90876:intron | 25.0% |
| !!! | CTTTCTTTGTTTTCATGTAA+GGG | + | chr1.4:87298290-87298309 | MS.gene90876:intron | 25.0% |
| AAACAAAATTAGAAGCCCAA+AGG | - | chr1.4:87298812-87298831 | None:intergenic | 30.0% | |
| ATGAAAACAAAGAAAGCAGT+TGG | - | chr1.4:87298286-87298305 | None:intergenic | 30.0% | |
| CAAAAGAACCAAATGCAAAA+AGG | + | chr1.4:87298206-87298225 | MS.gene90876:CDS | 30.0% | |
| GCCAAAATCAAAATGAATCT+CGG | + | chr1.4:87297917-87297936 | MS.gene90876:CDS | 30.0% | |
| TCAACAACCTTATCCAAATA+AGG | - | chr1.4:87298719-87298738 | None:intergenic | 30.0% | |
| TCTTAACATCCTTTGAATCA+GGG | - | chr1.4:87298433-87298452 | None:intergenic | 30.0% | |
| TGATTCAAAGGATGTTAAGA+GGG | + | chr1.4:87298433-87298452 | MS.gene90876:CDS | 30.0% | |
| TTTGCTTTCTTTACTTAAGC+TGG | + | chr1.4:87298852-87298871 | MS.gene90876:intron | 30.0% | |
| ! | AAGTGAAGTATGTTTTCCTT+TGG | + | chr1.4:87298793-87298812 | MS.gene90876:intron | 30.0% |
| ! | AGTGAAGTATGTTTTCCTTT+GGG | + | chr1.4:87298794-87298813 | MS.gene90876:intron | 30.0% |
| !! | GATTGGTTTGATTTGTTTCA+GGG | + | chr1.4:87298376-87298395 | MS.gene90876:intron | 30.0% |
| !! | TGATTGGTTTGATTTGTTTC+AGG | + | chr1.4:87298375-87298394 | MS.gene90876:intron | 30.0% |
| !! | TTGTGAAAAATAGGTTGGTA+AGG | + | chr1.4:87298540-87298559 | MS.gene90876:intron | 30.0% |
| !! | TTTGTTTTCATGTAAGGGTT+TGG | + | chr1.4:87298295-87298314 | MS.gene90876:intron | 30.0% |
| !!! | ACCGAGATTCATTTTGATTT+TGG | - | chr1.4:87297921-87297940 | None:intergenic | 30.0% |
| !!! | AGTTTGTGATTTTTTGACTC+TGG | + | chr1.4:87298117-87298136 | MS.gene90876:intron | 30.0% |
| !!! | GAGTGAAGCATGTTTTATTT+TGG | + | chr1.4:87298890-87298909 | MS.gene90876:intron | 30.0% |
| !!! | GCATTTGGTTCTTTTGAATT+TGG | - | chr1.4:87298202-87298221 | None:intergenic | 30.0% |
| !!! | GCTTTCTTTGTTTTCATGTA+AGG | + | chr1.4:87298289-87298308 | MS.gene90876:intron | 30.0% |
| !!! | GTTTTGGTTCTATAGTTTGA+GGG | + | chr1.4:87298345-87298364 | MS.gene90876:intron | 30.0% |
| !!! | TCATTTTGATTTTGGCTTCA+AGG | - | chr1.4:87297913-87297932 | None:intergenic | 30.0% |
| !!! | TGTTTTGGTTCTATAGTTTG+AGG | + | chr1.4:87298344-87298363 | MS.gene90876:intron | 30.0% |
| !!! | TTTTGGTTCTATAGTTTGAG+GGG | + | chr1.4:87298346-87298365 | MS.gene90876:intron | 30.0% |
| AAAACAAAGAAAGCAGTTGG+TGG | - | chr1.4:87298283-87298302 | None:intergenic | 35.0% | |
| AATGCAAAAAGGGCTAAAGT+TGG | + | chr1.4:87298217-87298236 | MS.gene90876:CDS | 35.0% | |
| AGCAGCATTATACAATTCCA+TGG | - | chr1.4:87298765-87298784 | None:intergenic | 35.0% | |
| ATGCAAAAAGGGCTAAAGTT+GGG | + | chr1.4:87298218-87298237 | MS.gene90876:CDS | 35.0% | |
| CATGGTCAATAATAAACCCT+TGG | - | chr1.4:87298511-87298530 | None:intergenic | 35.0% | |
| CTCTTAACATCCTTTGAATC+AGG | - | chr1.4:87298434-87298453 | None:intergenic | 35.0% | |
| CTGATTCAAAGGATGTTAAG+AGG | + | chr1.4:87298432-87298451 | MS.gene90876:CDS | 35.0% | |
| CTGTATGTATAGGATCAAGA+GGG | + | chr1.4:87298974-87298993 | MS.gene90876:intron | 35.0% | |
| TAAAGTTGGGAAAGGGAAAA+AGG | + | chr1.4:87298231-87298250 | MS.gene90876:CDS | 35.0% | |
| TCTGATAAGGAAGATAAGGA+AGG | + | chr1.4:87298998-87299017 | MS.gene90876:CDS | 35.0% | |
| TTTGCTCTCTTTACTTAAGC+TGG | + | chr1.4:87298949-87298968 | MS.gene90876:intron | 35.0% | |
| ! | ACTTTAGCCCTTTTTGCATT+TGG | - | chr1.4:87298217-87298236 | None:intergenic | 35.0% |
| ! | TTTCATGTAAGGGTTTGGTT+TGG | + | chr1.4:87298300-87298319 | MS.gene90876:intron | 35.0% |
| !! | GAAGAAGCCTTATTTGGATA+AGG | + | chr1.4:87298709-87298728 | MS.gene90876:CDS | 35.0% |
| !! | TTAGGAGAAGAAGCCTTATT+TGG | + | chr1.4:87298703-87298722 | MS.gene90876:intron | 35.0% |
| AAAAGGGCTAAAGTTGGGAA+AGG | + | chr1.4:87298223-87298242 | MS.gene90876:CDS | 40.0% | |
| AAAGGGCTAAAGTTGGGAAA+GGG | + | chr1.4:87298224-87298243 | MS.gene90876:CDS | 40.0% | |
| ACTGAAGGCAGAATATGAGA+AGG | + | chr1.4:87298739-87298758 | MS.gene90876:CDS | 40.0% | |
| GCTGTATGTATAGGATCAAG+AGG | + | chr1.4:87298973-87298992 | MS.gene90876:intron | 40.0% | |
| GGATAAGGTTGTTGAACTGA+AGG | + | chr1.4:87298724-87298743 | MS.gene90876:CDS | 40.0% | |
| GTTTGAGGGGTTTAGTTGAT+TGG | + | chr1.4:87298359-87298378 | MS.gene90876:intron | 40.0% | |
| TGGGAAAGGGAAAAAGGTTA+AGG | + | chr1.4:87298237-87298256 | MS.gene90876:CDS | 40.0% | |
| ! | GGGTTCTGATAAGGAAGATA+AGG | + | chr1.4:87298994-87299013 | MS.gene90876:CDS | 40.0% |
| !! | AAATAGGTTGGTAAGGAAGC+TGG | + | chr1.4:87298547-87298566 | MS.gene90876:intron | 40.0% |
| !! | TAAGCTGGTGCTGTATGTAT+AGG | + | chr1.4:87298964-87298983 | MS.gene90876:intron | 40.0% |
| ATGGCAGTGCTTTCGCTAAA+TGG | + | chr1.4:87297748-87297767 | MS.gene90876:CDS | 45.0% | |
| GGAAGCTAACCCTGATTCAA+AGG | + | chr1.4:87298421-87298440 | MS.gene90876:CDS | 45.0% | |
| TGCATGTCAATGAGTGCAAC+AGG | - | chr1.4:87297881-87297900 | None:intergenic | 45.0% | |
| ! | GGATCAAGAGGGTTCTGATA+AGG | + | chr1.4:87298985-87299004 | MS.gene90876:intron | 45.0% |
| ! | GGGGAAATTTTTCACCTCTC+GGG | - | chr1.4:87298090-87298109 | None:intergenic | 45.0% |
| ! | GGGGGAAATTTTTCACCTCT+CGG | - | chr1.4:87298091-87298110 | None:intergenic | 45.0% |
| !! | AAGCTGGTGCTGTATGCATA+GGG | + | chr1.4:87298868-87298887 | MS.gene90876:intron | 45.0% |
| !! | TAAGCTGGTGCTGTATGCAT+AGG | + | chr1.4:87298867-87298886 | MS.gene90876:intron | 45.0% |
| CAGCTTCCTTGTCATCAGAC+TGG | - | chr1.4:87299024-87299043 | None:intergenic | 50.0% | |
| CTGAAGTGAAGAAACCCGAG+AGG | + | chr1.4:87298073-87298092 | MS.gene90876:CDS | 50.0% | |
| GGCAGAATATGAGAAGGCCA+TGG | + | chr1.4:87298745-87298764 | MS.gene90876:CDS | 50.0% | |
| GTAAGGAAGCTGGTGAGAAG+TGG | + | chr1.4:87298557-87298576 | MS.gene90876:CDS | 50.0% | |
| GTTCTCGTTCGTGCCAAAGA+TGG | + | chr1.4:87297729-87297748 | MS.gene90876:CDS | 50.0% | |
| TGAAGCGGAACGAGAATCGA+CGG | - | chr1.4:87297709-87297728 | None:intergenic | 50.0% | |
| !! | AAAGCAGTTGGTGGACGCTT+CGG | - | chr1.4:87298274-87298293 | None:intergenic | 50.0% |
| !! | AGCGAAAGCACTGCCATCTT+TGG | - | chr1.4:87297745-87297764 | None:intergenic | 50.0% |
| AGGAAGCTGGTGAGAAGTGG+AGG | + | chr1.4:87298560-87298579 | MS.gene90876:CDS | 55.0% | |
| GAAGTGGAGGTCTCTGACTG+AGG | + | chr1.4:87298573-87298592 | MS.gene90876:CDS | 55.0% | |
| GGAAGGCCAGTCTGATGACA+AGG | + | chr1.4:87299015-87299034 | MS.gene90876:CDS | 55.0% | |
| GGCACGAACGAGAACTGAAG+CGG | - | chr1.4:87297724-87297743 | None:intergenic | 55.0% | |
| GACAAGGAAGCTGCTGCTGC+AGG | + | chr1.4:87299031-87299050 | MS.gene90876:CDS | 60.0% | |
| AGCTGCTGCTGCAGGAGAGG+TGG | + | chr1.4:87299039-87299058 | MS.gene90876:CDS | 65.0% | |
| GGAAGCTGCTGCTGCAGGAG+AGG | + | chr1.4:87299036-87299055 | MS.gene90876:CDS | 65.0% | |
| GGTGGACGCTTCGGCGCATT+AGG | - | chr1.4:87298265-87298284 | None:intergenic | 65.0% | |
| TGCTGCTGCAGGAGAGGTGG+AGG | + | chr1.4:87299042-87299061 | MS.gene90876:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 87297684 | 87299084 | 87297684 | ID=MS.gene90876 |
| chr1.4 | mRNA | 87297684 | 87299084 | 87297684 | ID=MS.gene90876.t1;Parent=MS.gene90876 |
| chr1.4 | exon | 87297684 | 87297769 | 87297684 | ID=MS.gene90876.t1.exon1;Parent=MS.gene90876.t1 |
| chr1.4 | CDS | 87297684 | 87297769 | 87297684 | ID=cds.MS.gene90876.t1;Parent=MS.gene90876.t1 |
| chr1.4 | exon | 87297856 | 87297938 | 87297856 | ID=MS.gene90876.t1.exon2;Parent=MS.gene90876.t1 |
| chr1.4 | CDS | 87297856 | 87297938 | 87297856 | ID=cds.MS.gene90876.t1;Parent=MS.gene90876.t1 |
| chr1.4 | exon | 87298049 | 87298094 | 87298049 | ID=MS.gene90876.t1.exon3;Parent=MS.gene90876.t1 |
| chr1.4 | CDS | 87298049 | 87298094 | 87298049 | ID=cds.MS.gene90876.t1;Parent=MS.gene90876.t1 |
| chr1.4 | exon | 87298192 | 87298305 | 87298192 | ID=MS.gene90876.t1.exon4;Parent=MS.gene90876.t1 |
| chr1.4 | CDS | 87298192 | 87298305 | 87298192 | ID=cds.MS.gene90876.t1;Parent=MS.gene90876.t1 |
| chr1.4 | exon | 87298397 | 87298454 | 87298397 | ID=MS.gene90876.t1.exon5;Parent=MS.gene90876.t1 |
| chr1.4 | CDS | 87298397 | 87298454 | 87298397 | ID=cds.MS.gene90876.t1;Parent=MS.gene90876.t1 |
| chr1.4 | exon | 87298553 | 87298597 | 87298553 | ID=MS.gene90876.t1.exon6;Parent=MS.gene90876.t1 |
| chr1.4 | CDS | 87298553 | 87298597 | 87298553 | ID=cds.MS.gene90876.t1;Parent=MS.gene90876.t1 |
| chr1.4 | exon | 87298707 | 87298799 | 87298707 | ID=MS.gene90876.t1.exon7;Parent=MS.gene90876.t1 |
| chr1.4 | CDS | 87298707 | 87298799 | 87298707 | ID=cds.MS.gene90876.t1;Parent=MS.gene90876.t1 |
| chr1.4 | exon | 87298986 | 87299084 | 87298986 | ID=MS.gene90876.t1.exon8;Parent=MS.gene90876.t1 |
| chr1.4 | CDS | 87298986 | 87299084 | 87298986 | ID=cds.MS.gene90876.t1;Parent=MS.gene90876.t1 |
| Gene Sequence |
| Protein sequence |
