Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92642.t1 | RYQ79443.1 | 60 | 135 | 37 | 1 | 1 | 118 | 328 | 462 | 4.60E-33 | 150.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92642.t1 | Q9SLX0 | 84.3 | 51 | 8 | 0 | 5 | 55 | 301 | 351 | 1.0e-17 | 90.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92642.t1 | A0A444WPU7 | 60.0 | 135 | 37 | 1 | 1 | 118 | 328 | 462 | 3.3e-33 | 150.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene92642 | 0.854161 | 1.48E-61 | -1.69E-46 |
| MS.gene049272 | MS.gene92642 | 0.813795 | 2.14E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene92642 | 0.803986 | 2.68E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene92642 | 0.81908 | 1.40E-52 | -1.69E-46 |
| MS.gene050156 | MS.gene92642 | 0.803447 | 3.47E-49 | -1.69E-46 |
| MS.gene05016 | MS.gene92642 | 0.83263 | 8.47E-56 | -1.69E-46 |
| MS.gene050237 | MS.gene92642 | 0.802442 | 5.60E-49 | -1.69E-46 |
| MS.gene050273 | MS.gene92642 | 0.802552 | 5.31E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene92642 | 0.833994 | 3.87E-56 | -1.69E-46 |
| MS.gene050561 | MS.gene92642 | 0.833462 | 5.26E-56 | -1.69E-46 |
| MS.gene050562 | MS.gene92642 | 0.827082 | 1.90E-54 | -1.69E-46 |
| MS.gene050611 | MS.gene92642 | 0.801365 | 9.32E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene92642 | 0.828655 | 7.97E-55 | -1.69E-46 |
| MS.gene051492 | MS.gene92642 | 0.828946 | 6.77E-55 | -1.69E-46 |
| MS.gene051574 | MS.gene92642 | 0.801783 | 7.65E-49 | -1.69E-46 |
| MS.gene051594 | MS.gene92642 | 0.803522 | 3.35E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene92642 | 0.821165 | 4.67E-53 | -1.69E-46 |
| MS.gene052037 | MS.gene92642 | 0.814966 | 1.18E-51 | -1.69E-46 |
| MS.gene052208 | MS.gene92642 | 0.803267 | 3.78E-49 | -1.69E-46 |
| MS.gene052239 | MS.gene92642 | -0.820752 | 5.81E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene92642 | 0.805667 | 1.19E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene92642 | 0.818651 | 1.75E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene92642 | 0.812786 | 3.56E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene92642 | 0.826059 | 3.34E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene92642 | 0.824783 | 6.70E-54 | -1.69E-46 |
| MS.gene052586 | MS.gene92642 | 0.814894 | 1.22E-51 | -1.69E-46 |
| MS.gene052768 | MS.gene92642 | 0.803411 | 3.53E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene92642 | 0.804779 | 1.83E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene92642 | 0.80337 | 3.60E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene92642 | 0.814034 | 1.89E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene92642 | 0.80042 | 1.45E-48 | -1.69E-46 |
| MS.gene053883 | MS.gene92642 | 0.804463 | 2.13E-49 | -1.69E-46 |
| MS.gene053966 | MS.gene92642 | 0.802926 | 4.45E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene92642 | 0.80515 | 1.53E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene92642 | 0.860506 | 1.97E-63 | -1.69E-46 |
| MS.gene05423 | MS.gene92642 | 0.829837 | 4.12E-55 | -1.69E-46 |
| MS.gene054291 | MS.gene92642 | -0.819555 | 1.09E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene92642 | 0.814205 | 1.73E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene92642 | 0.832156 | 1.11E-55 | -1.69E-46 |
| MS.gene055227 | MS.gene92642 | 0.831197 | 1.91E-55 | -1.69E-46 |
| MS.gene05531 | MS.gene92642 | 0.807407 | 5.13E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene92642 | 0.80492 | 1.71E-49 | -1.69E-46 |
| MS.gene055589 | MS.gene92642 | 0.808018 | 3.81E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene92642 | 0.833452 | 5.29E-56 | -1.69E-46 |
| MS.gene056050 | MS.gene92642 | 0.818622 | 1.78E-52 | -1.69E-46 |
| MS.gene056162 | MS.gene92642 | 0.813213 | 2.87E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene92642 | 0.803427 | 3.50E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene92642 | 0.81469 | 1.35E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene92642 | 0.81447 | 1.52E-51 | -1.69E-46 |
| MS.gene056498 | MS.gene92642 | 0.802133 | 6.48E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene92642 | 0.811601 | 6.45E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene92642 | 0.805531 | 1.28E-49 | -1.69E-46 |
| MS.gene057021 | MS.gene92642 | 0.823647 | 1.24E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene92642 | 0.815992 | 6.96E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene92642 | 0.832343 | 9.98E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene92642 | 0.816205 | 6.23E-52 | -1.69E-46 |
| MS.gene057414 | MS.gene92642 | 0.806829 | 6.80E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene92642 | 0.817029 | 4.08E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene92642 | 0.815275 | 1.00E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene92642 | 0.801159 | 1.03E-48 | -1.69E-46 |
| MS.gene058037 | MS.gene92642 | 0.805552 | 1.26E-49 | -1.69E-46 |
| MS.gene058294 | MS.gene92642 | 0.836793 | 7.60E-57 | -1.69E-46 |
| MS.gene058477 | MS.gene92642 | 0.804605 | 1.99E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene92642 | 0.834622 | 2.69E-56 | -1.69E-46 |
| MS.gene058979 | MS.gene92642 | 0.814377 | 1.59E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene92642 | 0.835716 | 1.43E-56 | -1.69E-46 |
| MS.gene059584 | MS.gene92642 | 0.832734 | 7.98E-56 | -1.69E-46 |
| MS.gene060373 | MS.gene92642 | 0.818768 | 1.65E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene92642 | 0.838393 | 2.95E-57 | -1.69E-46 |
| MS.gene060634 | MS.gene92642 | -0.814653 | 1.38E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92642.t1 | MTR_2g034900 | 95.614 | 114 | 5 | 0 | 5 | 118 | 296 | 409 | 8.74e-73 | 225 |
| MS.gene92642.t1 | MTR_4g131510 | 85.088 | 114 | 17 | 0 | 5 | 118 | 219 | 332 | 1.23e-65 | 204 |
| MS.gene92642.t1 | MTR_8g027585 | 81.579 | 114 | 21 | 0 | 5 | 118 | 212 | 325 | 1.52e-62 | 197 |
| MS.gene92642.t1 | MTR_1g083810 | 82.456 | 114 | 20 | 0 | 5 | 118 | 297 | 410 | 1.68e-62 | 199 |
| MS.gene92642.t1 | MTR_7g112350 | 79.825 | 114 | 23 | 0 | 5 | 118 | 297 | 410 | 9.21e-59 | 189 |
| MS.gene92642.t1 | MTR_4g133040 | 79.130 | 115 | 24 | 0 | 4 | 118 | 229 | 343 | 9.72e-59 | 188 |
| MS.gene92642.t1 | MTR_4g132980 | 76.522 | 115 | 27 | 0 | 5 | 119 | 62 | 176 | 5.65e-56 | 177 |
| MS.gene92642.t1 | MTR_4g121435 | 76.724 | 116 | 26 | 1 | 4 | 118 | 298 | 413 | 6.15e-56 | 181 |
| MS.gene92642.t1 | MTR_4g132980 | 76.522 | 115 | 27 | 0 | 5 | 119 | 190 | 304 | 9.25e-55 | 177 |
| MS.gene92642.t1 | MTR_4g127570 | 78.261 | 115 | 24 | 1 | 5 | 118 | 146 | 260 | 2.73e-49 | 162 |
| MS.gene92642.t1 | MTR_4g133030 | 75.439 | 114 | 28 | 0 | 5 | 118 | 217 | 330 | 6.32e-48 | 160 |
| MS.gene92642.t1 | MTR_4g131000 | 78.070 | 114 | 24 | 1 | 5 | 118 | 218 | 330 | 1.03e-46 | 156 |
| MS.gene92642.t1 | MTR_1g053470 | 69.298 | 114 | 33 | 2 | 7 | 118 | 93 | 206 | 4.05e-45 | 148 |
| MS.gene92642.t1 | MTR_1g053470 | 69.298 | 114 | 33 | 2 | 7 | 118 | 93 | 206 | 6.26e-45 | 148 |
| MS.gene92642.t1 | MTR_1g053470 | 69.298 | 114 | 33 | 2 | 7 | 118 | 93 | 206 | 3.67e-44 | 147 |
| MS.gene92642.t1 | MTR_4g132960 | 75.269 | 93 | 23 | 0 | 26 | 118 | 3 | 95 | 1.42e-37 | 126 |
| MS.gene92642.t1 | MTR_4g132967 | 75.269 | 93 | 23 | 0 | 26 | 118 | 7 | 99 | 1.18e-36 | 124 |
| MS.gene92642.t1 | MTR_7g112150 | 50.000 | 114 | 54 | 3 | 5 | 118 | 317 | 427 | 6.77e-27 | 103 |
| MS.gene92642.t1 | MTR_7g113400 | 50.893 | 112 | 52 | 3 | 5 | 116 | 316 | 424 | 1.17e-26 | 102 |
| MS.gene92642.t1 | MTR_4g124270 | 79.310 | 58 | 12 | 0 | 32 | 89 | 65 | 122 | 3.09e-25 | 93.6 |
| MS.gene92642.t1 | MTR_7g112160 | 47.368 | 114 | 57 | 3 | 5 | 118 | 317 | 427 | 9.04e-24 | 94.7 |
| MS.gene92642.t1 | MTR_4g013265 | 46.957 | 115 | 17 | 2 | 5 | 118 | 134 | 205 | 1.63e-22 | 90.1 |
| MS.gene92642.t1 | MTR_1g066760 | 36.190 | 105 | 60 | 2 | 7 | 105 | 310 | 413 | 2.16e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92642.t1 | AT3G06720 | 82.456 | 114 | 20 | 0 | 5 | 118 | 295 | 408 | 8.99e-61 | 194 |
| MS.gene92642.t1 | AT3G06720 | 82.456 | 114 | 20 | 0 | 5 | 118 | 295 | 408 | 8.99e-61 | 194 |
| MS.gene92642.t1 | AT4G16143 | 82.609 | 115 | 20 | 0 | 4 | 118 | 299 | 413 | 2.10e-56 | 183 |
| MS.gene92642.t1 | AT4G16143 | 82.609 | 115 | 20 | 0 | 4 | 118 | 299 | 413 | 2.10e-56 | 183 |
| MS.gene92642.t1 | AT1G09270 | 78.070 | 114 | 25 | 0 | 5 | 118 | 220 | 333 | 2.91e-56 | 181 |
| MS.gene92642.t1 | AT4G02150 | 75.893 | 112 | 27 | 0 | 5 | 116 | 298 | 409 | 3.45e-56 | 179 |
| MS.gene92642.t1 | AT1G09270 | 78.070 | 114 | 25 | 0 | 5 | 118 | 302 | 415 | 6.11e-56 | 182 |
| MS.gene92642.t1 | AT1G09270 | 78.070 | 114 | 25 | 0 | 5 | 118 | 302 | 415 | 6.11e-56 | 182 |
| MS.gene92642.t1 | AT4G02150 | 74.561 | 114 | 29 | 0 | 5 | 118 | 298 | 411 | 1.31e-55 | 181 |
| MS.gene92642.t1 | AT1G02690 | 72.807 | 114 | 31 | 0 | 5 | 118 | 300 | 413 | 7.13e-54 | 176 |
| MS.gene92642.t1 | AT1G02690 | 72.807 | 114 | 31 | 0 | 5 | 118 | 299 | 412 | 7.87e-54 | 176 |
| MS.gene92642.t1 | AT3G05720 | 59.649 | 114 | 46 | 0 | 5 | 118 | 283 | 396 | 3.35e-43 | 148 |
| MS.gene92642.t1 | AT3G05720 | 59.649 | 114 | 46 | 0 | 5 | 118 | 283 | 396 | 3.35e-43 | 148 |
| MS.gene92642.t1 | AT5G49310 | 61.739 | 115 | 44 | 0 | 4 | 118 | 292 | 406 | 1.89e-42 | 145 |
| MS.gene92642.t1 | AT5G52000 | 56.637 | 113 | 49 | 0 | 6 | 118 | 224 | 336 | 2.40e-38 | 134 |
| MS.gene92642.t1 | AT1G32880 | 60.417 | 48 | 19 | 0 | 71 | 118 | 40 | 87 | 1.37e-12 | 61.2 |
| MS.gene92642.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene92642.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene92642.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene92642.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene92642.t1 | AT5G49305 | 33.036 | 112 | 73 | 2 | 4 | 114 | 217 | 327 | 4.21e-11 | 58.9 |
| MS.gene92642.t1 | AT5G03070 | 30.769 | 104 | 67 | 1 | 7 | 105 | 310 | 413 | 6.34e-11 | 58.5 |
Find 25 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGAGGTTACCTGTATC+TGG | 0.286161 | 4.1:+50014491 | None:intergenic |
| TCTTGTGATTATGGGTCAAC+AGG | 0.349313 | 4.1:+50014572 | None:intergenic |
| GTATTAAGAAAGAAGCTTGC+TGG | 0.380667 | 4.1:-50014546 | MS.gene92642:CDS |
| AGCCGGACTGATTGCTCCTC+TGG | 0.418448 | 4.1:-50014033 | MS.gene92642:CDS |
| CACATACTTGATTTGCTCAT+GGG | 0.461333 | 4.1:+50013932 | None:intergenic |
| TTTCCCACCGTACGAAGTGC+AGG | 0.474639 | 4.1:+50015922 | None:intergenic |
| TCACATACTTGATTTGCTCA+TGG | 0.478259 | 4.1:+50013931 | None:intergenic |
| GCACTCTCCAATGCTACATC+TGG | 0.481318 | 4.1:-50013960 | MS.gene92642:CDS |
| ATTATATCAAACATTACAGC+TGG | 0.506298 | 4.1:-50014523 | MS.gene92642:CDS |
| ACGGTGGGAAATATTGTAAC+GGG | 0.520713 | 4.1:-50015910 | MS.gene92642:CDS |
| GGGATCAGCACTGAAGGAGA+TGG | 0.533434 | 4.1:+50015943 | None:intergenic |
| ATGTAGGCTGTTATTGAAGC+CGG | 0.538904 | 4.1:-50014050 | MS.gene92642:intron |
| GCTGATCCCTGCACTTCGTA+CGG | 0.546568 | 4.1:-50015929 | MS.gene92642:CDS |
| GGGAGATGATGCGCAGACTC+AGG | 0.546817 | 4.1:-50015890 | MS.gene92642:intron |
| ATCCCTGCACTTCGTACGGT+GGG | 0.552774 | 4.1:-50015925 | MS.gene92642:CDS |
| GACCAGAGGAGCAATCAGTC+CGG | 0.553350 | 4.1:+50014031 | None:intergenic |
| TGGAAACAAAGACCAGATAC+AGG | 0.554927 | 4.1:-50014503 | MS.gene92642:intron |
| GTCAACAGGCTCAAAAGACA+TGG | 0.559325 | 4.1:+50014586 | None:intergenic |
| AGTGCAGGGATCAGCACTGA+AGG | 0.573114 | 4.1:+50015937 | None:intergenic |
| GATCCCTGCACTTCGTACGG+TGG | 0.581176 | 4.1:-50015926 | MS.gene92642:CDS |
| GGTACCGCCAGATGTAGCAT+TGG | 0.592074 | 4.1:+50013953 | None:intergenic |
| TACGGTGGGAAATATTGTAA+CGG | 0.612298 | 4.1:-50015911 | MS.gene92642:CDS |
| CTCTCCAATGCTACATCTGG+CGG | 0.629473 | 4.1:-50013957 | MS.gene92642:CDS |
| TTCCCACCGTACGAAGTGCA+GGG | 0.641796 | 4.1:+50015923 | None:intergenic |
| TCAACAGGCTCAAAAGACAT+GGG | 0.682804 | 4.1:+50014587 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTTACTAAATTTTAATA+TGG | + | chr4.1:50014093-50014112 | None:intergenic | 10.0% |
| !! | ACTAATTAATGCTATATATT+TGG | - | chr4.1:50014657-50014676 | MS.gene92642:intron | 15.0% |
| !! | CAAAGAAATAATTAATAGTA+GGG | + | chr4.1:50014356-50014375 | None:intergenic | 15.0% |
| !!! | AAAAAAACAAATGTTTGTTA+TGG | - | chr4.1:50014985-50015004 | MS.gene92642:intron | 15.0% |
| !!! | AAAAAACAAATGTTTGTTAT+GGG | - | chr4.1:50014986-50015005 | MS.gene92642:intron | 15.0% |
| !!! | ATTCAAATTTGATGTTTTTT+GGG | - | chr4.1:50015497-50015516 | MS.gene92642:intron | 15.0% |
| !!! | TATTCAAATTTGATGTTTTT+TGG | - | chr4.1:50015496-50015515 | MS.gene92642:intron | 15.0% |
| !! | AAAAAATAGAGATATATTGG+TGG | - | chr4.1:50015053-50015072 | MS.gene92642:intron | 20.0% |
| !! | AGTTATGTATGTAATTGAAA+TGG | + | chr4.1:50015690-50015709 | None:intergenic | 20.0% |
| !! | CCAAAGAAATAATTAATAGT+AGG | + | chr4.1:50014357-50014376 | None:intergenic | 20.0% |
| !! | TTTATGTATTTACAACAGAA+TGG | + | chr4.1:50015653-50015672 | None:intergenic | 20.0% |
| !! | TTTGCAAGTAATTAGATTTA+GGG | - | chr4.1:50014230-50014249 | MS.gene92642:intron | 20.0% |
| !!! | AATACTTTTCTTGTGATTAT+GGG | + | chr4.1:50015323-50015342 | None:intergenic | 20.0% |
| !!! | ACCAATATATCTCTATTTTT+TGG | + | chr4.1:50015054-50015073 | None:intergenic | 20.0% |
| !!! | CCTACTATTAATTATTTCTT+TGG | - | chr4.1:50014354-50014373 | MS.gene92642:intron | 20.0% |
| !!! | TAATACTTTTCTTGTGATTA+TGG | + | chr4.1:50015324-50015343 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTAATGTCAAACT+CGG | + | chr4.1:50015895-50015914 | None:intergenic | 20.0% |
| !!! | TTTTGCAAGTAATTAGATTT+AGG | - | chr4.1:50014229-50014248 | MS.gene92642:intron | 20.0% |
| ! | AAACGACACTTAAAAATGAA+CGG | - | chr4.1:50015146-50015165 | MS.gene92642:intron | 25.0% |
| ! | AAGATATGAGTAATTGACAA+AGG | + | chr4.1:50014602-50014621 | None:intergenic | 25.0% |
| ! | AATCCAACAATTACTCTAAT+TGG | + | chr4.1:50015606-50015625 | None:intergenic | 25.0% |
| ! | AATTGAGTTATCATGAACAT+GGG | + | chr4.1:50015419-50015438 | None:intergenic | 25.0% |
| ! | AGATATGAGTAATTGACAAA+GGG | + | chr4.1:50014601-50014620 | None:intergenic | 25.0% |
| ! | ATTATATCAAACATTACAGC+TGG | - | chr4.1:50015361-50015380 | MS.gene92642:intron | 25.0% |
| ! | GCCAAAAAATAGAGATATAT+TGG | - | chr4.1:50015050-50015069 | MS.gene92642:intron | 25.0% |
| ! | GTTGTAAATACATAAAAGAC+AGG | - | chr4.1:50015657-50015676 | MS.gene92642:intron | 25.0% |
| ! | TACAACAGAATGGAAAATAA+GGG | + | chr4.1:50015643-50015662 | None:intergenic | 25.0% |
| ! | TTACAACAGAATGGAAAATA+AGG | + | chr4.1:50015644-50015663 | None:intergenic | 25.0% |
| !! | AAACACATACTTTAGCATTT+TGG | + | chr4.1:50014262-50014281 | None:intergenic | 25.0% |
| !! | CTAAATCAGTACTTTATTTC+AGG | + | chr4.1:50014137-50014156 | None:intergenic | 25.0% |
| !! | TAATTGACAAAGGGTATAAT+TGG | + | chr4.1:50014592-50014611 | None:intergenic | 25.0% |
| !! | TTCTTCTTTTTGAACATTCA+TGG | + | chr4.1:50014886-50014905 | None:intergenic | 25.0% |
| !!! | ATATTGGTGGATTAAATTGA+GGG | - | chr4.1:50015066-50015085 | MS.gene92642:intron | 25.0% |
| !!! | GTTAGCTTATTTTCTGAAAA+AGG | - | chr4.1:50015789-50015808 | MS.gene92642:intron | 25.0% |
| !!! | TATATTGGTGGATTAAATTG+AGG | - | chr4.1:50015065-50015084 | MS.gene92642:intron | 25.0% |
| AAACGACACTTAAAAAGGAA+CGG | + | chr4.1:50014510-50014529 | None:intergenic | 30.0% | |
| AAATACATAAAAGACAGGTG+TGG | - | chr4.1:50015662-50015681 | MS.gene92642:intron | 30.0% | |
| ACACCAATTAGAGTAATTGT+TGG | - | chr4.1:50015600-50015619 | MS.gene92642:intron | 30.0% | |
| ACATTAAAAAAGAAGCTGCA+TGG | - | chr4.1:50015901-50015920 | MS.gene92642:CDS | 30.0% | |
| AGAGTAATTGTTGGATTGTT+AGG | - | chr4.1:50015609-50015628 | MS.gene92642:intron | 30.0% | |
| CAAAATCAGATAACTCTCAA+AGG | + | chr4.1:50015235-50015254 | None:intergenic | 30.0% | |
| CAATTGAGTTATCATGAACA+TGG | + | chr4.1:50015420-50015439 | None:intergenic | 30.0% | |
| CATTAAAAAAGAAGCTGCAT+GGG | - | chr4.1:50015902-50015921 | MS.gene92642:CDS | 30.0% | |
| CTTGTGAATTGTTCAACAAT+TGG | - | chr4.1:50014031-50014050 | MS.gene92642:CDS | 30.0% | |
| GAACCATTTATGTATGATGT+AGG | - | chr4.1:50015818-50015837 | MS.gene92642:intron | 30.0% | |
| TACCATAACGACAGTTAAAT+AGG | + | chr4.1:50014551-50014570 | None:intergenic | 30.0% | |
| TCTTTGGTCAATTAACCTAA+TGG | - | chr4.1:50014370-50014389 | MS.gene92642:intron | 30.0% | |
| TGTAGATATATTTACTTCCC+AGG | - | chr4.1:50015573-50015592 | MS.gene92642:intron | 30.0% | |
| TGTTCAAAAAGAAGAAAGAG+TGG | - | chr4.1:50014890-50014909 | MS.gene92642:intron | 30.0% | |
| TTCCTATTTAACTGTCGTTA+TGG | - | chr4.1:50014546-50014565 | MS.gene92642:CDS | 30.0% | |
| ! | ACTGTCGTTATGGTATTTTA+AGG | - | chr4.1:50014556-50014575 | MS.gene92642:CDS | 30.0% |
| ! | GAGAGTTATCTGATTTTGTT+GGG | - | chr4.1:50015237-50015256 | MS.gene92642:intron | 30.0% |
| ! | TACAATGATTGTTATTGCAC+CGG | + | chr4.1:50015549-50015568 | None:intergenic | 30.0% |
| ! | TGAGAGTTATCTGATTTTGT+TGG | - | chr4.1:50015236-50015255 | MS.gene92642:intron | 30.0% |
| !! | CTGTCGTTATGGTATTTTAA+GGG | - | chr4.1:50014557-50014576 | MS.gene92642:CDS | 30.0% |
| !!! | AATTCACTTTGCTATTTTCG+TGG | - | chr4.1:50015113-50015132 | MS.gene92642:intron | 30.0% |
| !!! | CCTTTTTAAGTGTCGTTTTA+GGG | - | chr4.1:50014512-50014531 | MS.gene92642:CDS | 30.0% |
| !!! | TAGTGTTGTGTTGGTAATTT+TGG | - | chr4.1:50014154-50014173 | MS.gene92642:intron | 30.0% |
| !!! | TCCTTTTTAAGTGTCGTTTT+AGG | - | chr4.1:50014511-50014530 | MS.gene92642:CDS | 30.0% |
| !!! | TGCCATTTTGTTTTCTGTTT+GGG | - | chr4.1:50015723-50015742 | MS.gene92642:intron | 30.0% |
| !!! | TTGCCATTTTGTTTTCTGTT+TGG | - | chr4.1:50015722-50015741 | MS.gene92642:intron | 30.0% |
| ACCCCAAACAGAAAACAAAA+TGG | + | chr4.1:50015728-50015747 | None:intergenic | 35.0% | |
| ACTCTAATTGGTGTATAACC+TGG | + | chr4.1:50015594-50015613 | None:intergenic | 35.0% | |
| AGACTCAGGTAATGTCATAA+TGG | - | chr4.1:50014008-50014027 | MS.gene92642:CDS | 35.0% | |
| AGACTCATTGGAACTACTAA+TGG | - | chr4.1:50014914-50014933 | MS.gene92642:intron | 35.0% | |
| CAGCCTACATCATACATAAA+TGG | + | chr4.1:50015824-50015843 | None:intergenic | 35.0% | |
| CCCTAAAACGACACTTAAAA+AGG | + | chr4.1:50014515-50014534 | None:intergenic | 35.0% | |
| CTCTAATTGGTGTATAACCT+GGG | + | chr4.1:50015593-50015612 | None:intergenic | 35.0% | |
| GACACTTAAAAATGAACGGA+GGG | - | chr4.1:50015150-50015169 | MS.gene92642:intron | 35.0% | |
| GTATTAAGAAAGAAGCTTGC+TGG | - | chr4.1:50015338-50015357 | MS.gene92642:intron | 35.0% | |
| GTGAGCATAACTCATTCATA+GGG | + | chr4.1:50014461-50014480 | None:intergenic | 35.0% | |
| GTTATCATGAACATGGGATT+TGG | + | chr4.1:50015413-50015432 | None:intergenic | 35.0% | |
| TACGGTGGGAAATATTGTAA+CGG | - | chr4.1:50013973-50013992 | MS.gene92642:CDS | 35.0% | |
| TCATTGGAACTACTAATGGA+AGG | - | chr4.1:50014918-50014937 | MS.gene92642:intron | 35.0% | |
| ! | GTATCACATGCTGTTTAACA+TGG | - | chr4.1:50015519-50015538 | MS.gene92642:intron | 35.0% |
| ! | TCTTTTTGTCAGGCTGTTAT+TGG | - | chr4.1:50015262-50015281 | MS.gene92642:intron | 35.0% |
| !! | CACATACTTGATTTGCTCAT+GGG | + | chr4.1:50015955-50015974 | None:intergenic | 35.0% |
| !! | GTACTGATTTAGTGTTGTGT+TGG | - | chr4.1:50014145-50014164 | MS.gene92642:intron | 35.0% |
| !! | TCACATACTTGATTTGCTCA+TGG | + | chr4.1:50015956-50015975 | None:intergenic | 35.0% |
| !! | TTTTGAAGAAGATTGACCAG+AGG | + | chr4.1:50015870-50015889 | None:intergenic | 35.0% |
| !!! | GCCATTTTGTTTTCTGTTTG+GGG | - | chr4.1:50015724-50015743 | MS.gene92642:intron | 35.0% |
| ACGGTGGGAAATATTGTAAC+GGG | - | chr4.1:50013974-50013993 | MS.gene92642:CDS | 40.0% | |
| ACTACTAATGGAAGGTGAAG+AGG | - | chr4.1:50014926-50014945 | MS.gene92642:intron | 40.0% | |
| AGAAAGAGTGGAAGACTCAT+TGG | - | chr4.1:50014902-50014921 | MS.gene92642:intron | 40.0% | |
| ATAGGGACATCACAATATGC+AGG | + | chr4.1:50014444-50014463 | None:intergenic | 40.0% | |
| ATCATGAACATGGGATTTGG+AGG | + | chr4.1:50015410-50015429 | None:intergenic | 40.0% | |
| ATGAATGAGTTATGCTCACG+TGG | - | chr4.1:50014462-50014481 | MS.gene92642:intron | 40.0% | |
| ATGTAGGCTGTTATTGAAGC+CGG | - | chr4.1:50015834-50015853 | MS.gene92642:intron | 40.0% | |
| ATTTGGAGGTTACCTGTATC+TGG | + | chr4.1:50015396-50015415 | None:intergenic | 40.0% | |
| CGACACTTAAAAATGAACGG+AGG | - | chr4.1:50015149-50015168 | MS.gene92642:intron | 40.0% | |
| CGTGAGCATAACTCATTCAT+AGG | + | chr4.1:50014462-50014481 | None:intergenic | 40.0% | |
| CTACTAATGGAAGGTGAAGA+GGG | - | chr4.1:50014927-50014946 | MS.gene92642:intron | 40.0% | |
| TAGGGACATCACAATATGCA+GGG | + | chr4.1:50014443-50014462 | None:intergenic | 40.0% | |
| TCAACAGGCTCAAAAGACAT+GGG | + | chr4.1:50015300-50015319 | None:intergenic | 40.0% | |
| TCTTGTGATTATGGGTCAAC+AGG | + | chr4.1:50015315-50015334 | None:intergenic | 40.0% | |
| TGGAAACAAAGACCAGATAC+AGG | - | chr4.1:50015381-50015400 | MS.gene92642:intron | 40.0% | |
| TGGTCAATTAACCTAATGGC+TGG | - | chr4.1:50014374-50014393 | MS.gene92642:intron | 40.0% | |
| ! | TGCTGTTTAACATGGAGATC+CGG | - | chr4.1:50015527-50015546 | MS.gene92642:intron | 40.0% |
| ! | TTGTTGGGACTCTTTTTGTC+AGG | - | chr4.1:50015252-50015271 | MS.gene92642:intron | 40.0% |
| !! | TGAATTTCTAGCCAGCCATT+AGG | + | chr4.1:50014388-50014407 | None:intergenic | 40.0% |
| ACCCCTTGAGATGAGTAAGT+GGG | - | chr4.1:50014407-50014426 | MS.gene92642:intron | 45.0% | |
| AGGGACATCACAATATGCAG+GGG | + | chr4.1:50014442-50014461 | None:intergenic | 45.0% | |
| CGACACTTAAAAAGGAACGG+AGG | + | chr4.1:50014507-50014526 | None:intergenic | 45.0% | |
| GTCAACAGGCTCAAAAGACA+TGG | + | chr4.1:50015301-50015320 | None:intergenic | 45.0% | |
| TCCCCACTTACTCATCTCAA+GGG | + | chr4.1:50014412-50014431 | None:intergenic | 45.0% | |
| TTCCCCACTTACTCATCTCA+AGG | + | chr4.1:50014413-50014432 | None:intergenic | 45.0% | |
| !! | TAAATTAATTAGAAATAATT+AGG | + | chr4.1:50014063-50014082 | None:intergenic | 5.0% |
| ACATCACAATATGCAGGGGC+CGG | + | chr4.1:50014438-50014457 | None:intergenic | 50.0% | |
| CACCCCTTGAGATGAGTAAG+TGG | - | chr4.1:50014406-50014425 | MS.gene92642:intron | 50.0% | |
| CCCCACTTACTCATCTCAAG+GGG | + | chr4.1:50014411-50014430 | None:intergenic | 50.0% | |
| CCCCTTGAGATGAGTAAGTG+GGG | - | chr4.1:50014408-50014427 | MS.gene92642:intron | 50.0% | |
| CTCTCCAATGCTACATCTGG+CGG | - | chr4.1:50015927-50015946 | MS.gene92642:CDS | 50.0% | |
| GCACTCTCCAATGCTACATC+TGG | - | chr4.1:50015924-50015943 | MS.gene92642:CDS | 50.0% | |
| ATCACAATATGCAGGGGCCG+GGG | + | chr4.1:50014436-50014455 | None:intergenic | 55.0% | |
| ATCCCTGCACTTCGTACGGT+GGG | - | chr4.1:50013959-50013978 | MS.gene92642:CDS | 55.0% | |
| CATCACAATATGCAGGGGCC+GGG | + | chr4.1:50014437-50014456 | None:intergenic | 55.0% | |
| GACCAGAGGAGCAATCAGTC+CGG | + | chr4.1:50015856-50015875 | None:intergenic | 55.0% | |
| GATGAGTAAGTGGGGAACCC+CGG | - | chr4.1:50014416-50014435 | MS.gene92642:intron | 55.0% | |
| GCTGATCCCTGCACTTCGTA+CGG | - | chr4.1:50013955-50013974 | MS.gene92642:CDS | 55.0% | |
| GGTACCGCCAGATGTAGCAT+TGG | + | chr4.1:50015934-50015953 | None:intergenic | 55.0% | |
| TTCCCACCGTACGAAGTGCA+GGG | + | chr4.1:50013964-50013983 | None:intergenic | 55.0% | |
| TTTCCCACCGTACGAAGTGC+AGG | + | chr4.1:50013965-50013984 | None:intergenic | 55.0% | |
| ! | AGTGCAGGGATCAGCACTGA+AGG | + | chr4.1:50013950-50013969 | None:intergenic | 55.0% |
| ! | GGGATCAGCACTGAAGGAGA+TGG | + | chr4.1:50013944-50013963 | None:intergenic | 55.0% |
| AGCCGGACTGATTGCTCCTC+TGG | - | chr4.1:50015851-50015870 | MS.gene92642:intron | 60.0% | |
| GATCCCTGCACTTCGTACGG+TGG | - | chr4.1:50013958-50013977 | MS.gene92642:CDS | 60.0% | |
| GGGAGATGATGCGCAGACTC+AGG | - | chr4.1:50013994-50014013 | MS.gene92642:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 50013926 | 50015980 | 50013926 | ID=MS.gene92642 |
| chr4.1 | mRNA | 50013926 | 50015980 | 50013926 | ID=MS.gene92642.t1;Parent=MS.gene92642 |
| chr4.1 | exon | 50015891 | 50015980 | 50015891 | ID=MS.gene92642.t1.exon1;Parent=MS.gene92642.t1 |
| chr4.1 | CDS | 50015891 | 50015980 | 50015891 | ID=cds.MS.gene92642.t1;Parent=MS.gene92642.t1 |
| chr4.1 | exon | 50014504 | 50014632 | 50014504 | ID=MS.gene92642.t1.exon2;Parent=MS.gene92642.t1 |
| chr4.1 | CDS | 50014504 | 50014632 | 50014504 | ID=cds.MS.gene92642.t1;Parent=MS.gene92642.t1 |
| chr4.1 | exon | 50013926 | 50014066 | 50013926 | ID=MS.gene92642.t1.exon3;Parent=MS.gene92642.t1 |
| chr4.1 | CDS | 50013926 | 50014066 | 50013926 | ID=cds.MS.gene92642.t1;Parent=MS.gene92642.t1 |
| Gene Sequence |
| Protein sequence |
