Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93102.t1 | XP_013470410.1 | 98.5 | 205 | 3 | 0 | 3 | 207 | 6 | 210 | 1.00E-75 | 293.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93102.t1 | Q8LDF9 | 62.1 | 169 | 54 | 4 | 4 | 165 | 15 | 180 | 1.3e-26 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93102.t1 | A0A072VSQ8 | 98.5 | 205 | 3 | 0 | 3 | 207 | 6 | 210 | 7.2e-76 | 293.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene93102.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene93102 | 0.819185 | 1.33E-52 | -1.69E-46 |
| MS.gene049596 | MS.gene93102 | 0.829017 | 6.51E-55 | -1.69E-46 |
| MS.gene049622 | MS.gene93102 | 0.851222 | 1.02E-60 | -1.69E-46 |
| MS.gene049660 | MS.gene93102 | 0.802264 | 6.09E-49 | -1.69E-46 |
| MS.gene04972 | MS.gene93102 | 0.814728 | 1.33E-51 | -1.69E-46 |
| MS.gene04985 | MS.gene93102 | 0.866968 | 1.93E-65 | -1.69E-46 |
| MS.gene049989 | MS.gene93102 | 0.915335 | 6.65E-85 | -1.69E-46 |
| MS.gene050297 | MS.gene93102 | 0.903097 | 4.93E-79 | -1.69E-46 |
| MS.gene050310 | MS.gene93102 | 0.80476 | 1.85E-49 | -1.69E-46 |
| MS.gene050648 | MS.gene93102 | 0.838108 | 3.50E-57 | -1.69E-46 |
| MS.gene051094 | MS.gene93102 | 0.823041 | 1.71E-53 | -1.69E-46 |
| MS.gene05124 | MS.gene93102 | 0.833685 | 4.63E-56 | -1.69E-46 |
| MS.gene051263 | MS.gene93102 | 0.870099 | 1.88E-66 | -1.69E-46 |
| MS.gene051423 | MS.gene93102 | 0.804423 | 2.18E-49 | -1.69E-46 |
| MS.gene051478 | MS.gene93102 | 0.806112 | 9.64E-50 | -1.69E-46 |
| MS.gene051629 | MS.gene93102 | 0.87677 | 1.07E-68 | -1.69E-46 |
| MS.gene051742 | MS.gene93102 | 0.827004 | 1.99E-54 | -1.69E-46 |
| MS.gene051816 | MS.gene93102 | 0.841435 | 4.76E-58 | -1.69E-46 |
| MS.gene051955 | MS.gene93102 | 0.842857 | 2.00E-58 | -1.69E-46 |
| MS.gene052143 | MS.gene93102 | 0.842869 | 1.99E-58 | -1.69E-46 |
| MS.gene052308 | MS.gene93102 | 0.831631 | 1.50E-55 | -1.69E-46 |
| MS.gene052367 | MS.gene93102 | 0.902091 | 1.38E-78 | -1.69E-46 |
| MS.gene053035 | MS.gene93102 | 0.818402 | 2.00E-52 | -1.69E-46 |
| MS.gene053173 | MS.gene93102 | 0.866841 | 2.12E-65 | -1.69E-46 |
| MS.gene053348 | MS.gene93102 | 0.857422 | 1.65E-62 | -1.69E-46 |
| MS.gene053416 | MS.gene93102 | 0.892935 | 1.00E-74 | -1.69E-46 |
| MS.gene053417 | MS.gene93102 | 0.894779 | 1.79E-75 | -1.69E-46 |
| MS.gene05369 | MS.gene93102 | 0.819899 | 9.12E-53 | -1.69E-46 |
| MS.gene053929 | MS.gene93102 | 0.801504 | 8.73E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene93102 | 0.872552 | 2.91E-67 | -1.69E-46 |
| MS.gene054552 | MS.gene93102 | 0.80238 | 5.77E-49 | -1.69E-46 |
| MS.gene054593 | MS.gene93102 | 0.837854 | 4.07E-57 | -1.69E-46 |
| MS.gene054643 | MS.gene93102 | 0.868008 | 8.98E-66 | -1.69E-46 |
| MS.gene055308 | MS.gene93102 | 0.854788 | 9.75E-62 | -1.69E-46 |
| MS.gene055411 | MS.gene93102 | 0.818374 | 2.03E-52 | -1.69E-46 |
| MS.gene055578 | MS.gene93102 | 0.867991 | 9.10E-66 | -1.69E-46 |
| MS.gene055579 | MS.gene93102 | 0.815533 | 8.81E-52 | -1.69E-46 |
| MS.gene055631 | MS.gene93102 | 0.803406 | 3.54E-49 | -1.69E-46 |
| MS.gene055957 | MS.gene93102 | 0.92018 | 1.77E-87 | -1.69E-46 |
| MS.gene056041 | MS.gene93102 | 0.910809 | 1.24E-82 | -1.69E-46 |
| MS.gene056042 | MS.gene93102 | 0.858619 | 7.27E-63 | -1.69E-46 |
| MS.gene056228 | MS.gene93102 | 0.820709 | 5.94E-53 | -1.69E-46 |
| MS.gene056335 | MS.gene93102 | 0.861257 | 1.16E-63 | -1.69E-46 |
| MS.gene05640 | MS.gene93102 | 0.873611 | 1.29E-67 | -1.69E-46 |
| MS.gene056526 | MS.gene93102 | 0.85205 | 5.95E-61 | -1.69E-46 |
| MS.gene056528 | MS.gene93102 | 0.819331 | 1.23E-52 | -1.69E-46 |
| MS.gene057358 | MS.gene93102 | 0.805479 | 1.31E-49 | -1.69E-46 |
| MS.gene057367 | MS.gene93102 | 0.815518 | 8.87E-52 | -1.69E-46 |
| MS.gene057458 | MS.gene93102 | 0.871671 | 5.72E-67 | -1.69E-46 |
| MS.gene057483 | MS.gene93102 | 0.827041 | 1.95E-54 | -1.69E-46 |
| MS.gene058128 | MS.gene93102 | 0.802419 | 5.66E-49 | -1.69E-46 |
| MS.gene058196 | MS.gene93102 | 0.846166 | 2.58E-59 | -1.69E-46 |
| MS.gene058197 | MS.gene93102 | 0.849253 | 3.64E-60 | -1.69E-46 |
| MS.gene058198 | MS.gene93102 | 0.848041 | 7.89E-60 | -1.69E-46 |
| MS.gene058818 | MS.gene93102 | 0.868073 | 8.56E-66 | -1.69E-46 |
| MS.gene058827 | MS.gene93102 | 0.824739 | 6.86E-54 | -1.69E-46 |
| MS.gene058828 | MS.gene93102 | 0.80168 | 8.03E-49 | -1.69E-46 |
| MS.gene058844 | MS.gene93102 | 0.835989 | 1.22E-56 | -1.69E-46 |
| MS.gene058853 | MS.gene93102 | 0.817702 | 2.88E-52 | -1.69E-46 |
| MS.gene059300 | MS.gene93102 | 0.876228 | 1.65E-68 | -1.69E-46 |
| MS.gene059553 | MS.gene93102 | 0.848613 | 5.48E-60 | -1.69E-46 |
| MS.gene060473 | MS.gene93102 | 0.90271 | 7.34E-79 | -1.69E-46 |
| MS.gene060565 | MS.gene93102 | 0.901312 | 3.04E-78 | -1.69E-46 |
| MS.gene06057 | MS.gene93102 | 0.882544 | 9.53E-71 | -1.69E-46 |
| MS.gene060825 | MS.gene93102 | 0.800369 | 1.49E-48 | -1.69E-46 |
| MS.gene06093 | MS.gene93102 | 0.868665 | 5.52E-66 | -1.69E-46 |
| MS.gene061099 | MS.gene93102 | 0.875899 | 2.14E-68 | -1.69E-46 |
| MS.gene061260 | MS.gene93102 | 0.894289 | 2.84E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93102.t1 | MTR_1g115220 | 98.544 | 206 | 3 | 0 | 2 | 207 | 5 | 210 | 6.84e-146 | 404 |
| MS.gene93102.t1 | MTR_8g018100 | 73.554 | 121 | 14 | 1 | 19 | 139 | 144 | 246 | 5.37e-51 | 165 |
| MS.gene93102.t1 | MTR_3g115580 | 61.798 | 89 | 34 | 0 | 86 | 174 | 32 | 120 | 2.23e-30 | 109 |
| MS.gene93102.t1 | MTR_5g024180 | 49.091 | 110 | 50 | 2 | 83 | 186 | 16 | 125 | 9.71e-28 | 102 |
| MS.gene93102.t1 | MTR_8g073345 | 44.737 | 114 | 58 | 1 | 83 | 191 | 16 | 129 | 3.88e-26 | 98.2 |
| MS.gene93102.t1 | MTR_8g073345 | 45.872 | 109 | 54 | 1 | 83 | 186 | 16 | 124 | 5.82e-26 | 98.2 |
| MS.gene93102.t1 | MTR_7g068280 | 60.811 | 74 | 29 | 0 | 95 | 168 | 47 | 120 | 2.44e-25 | 97.1 |
| MS.gene93102.t1 | MTR_4g094622 | 48.750 | 80 | 41 | 0 | 89 | 168 | 54 | 133 | 1.94e-20 | 84.0 |
| MS.gene93102.t1 | MTR_7g082820 | 51.351 | 74 | 35 | 1 | 95 | 168 | 9 | 81 | 1.82e-18 | 78.6 |
| MS.gene93102.t1 | MTR_5g024180 | 43.023 | 86 | 44 | 2 | 106 | 186 | 3 | 88 | 2.87e-14 | 66.2 |
| MS.gene93102.t1 | MTR_0191s0020 | 29.448 | 163 | 79 | 7 | 2 | 164 | 7 | 133 | 2.89e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93102.t1 | AT5G23420 | 54.167 | 168 | 67 | 5 | 4 | 164 | 15 | 179 | 6.74e-45 | 149 |
| MS.gene93102.t1 | AT4G35570 | 50.000 | 102 | 50 | 1 | 90 | 191 | 25 | 125 | 3.21e-28 | 103 |
| MS.gene93102.t1 | AT4G35570 | 50.000 | 102 | 50 | 1 | 90 | 191 | 25 | 125 | 3.21e-28 | 103 |
| MS.gene93102.t1 | AT2G17560 | 47.170 | 106 | 55 | 1 | 90 | 194 | 25 | 130 | 2.10e-26 | 99.0 |
| MS.gene93102.t1 | AT3G51880 | 47.826 | 115 | 54 | 2 | 94 | 207 | 48 | 157 | 3.48e-26 | 99.8 |
| MS.gene93102.t1 | AT2G17560 | 50.538 | 93 | 45 | 1 | 90 | 181 | 25 | 117 | 1.94e-25 | 96.7 |
| MS.gene93102.t1 | AT2G17560 | 50.538 | 93 | 45 | 1 | 90 | 181 | 25 | 117 | 1.94e-25 | 96.7 |
| MS.gene93102.t1 | AT1G20693 | 55.422 | 83 | 36 | 1 | 87 | 168 | 25 | 107 | 2.16e-25 | 96.7 |
| MS.gene93102.t1 | AT1G20693 | 53.535 | 99 | 42 | 3 | 87 | 182 | 25 | 122 | 2.42e-25 | 96.7 |
| MS.gene93102.t1 | AT1G20693 | 53.535 | 99 | 42 | 3 | 87 | 182 | 25 | 122 | 2.49e-25 | 96.7 |
| MS.gene93102.t1 | AT3G51880 | 47.619 | 105 | 50 | 1 | 94 | 198 | 48 | 147 | 1.18e-24 | 95.9 |
| MS.gene93102.t1 | AT3G51880 | 47.619 | 105 | 50 | 1 | 94 | 198 | 48 | 147 | 1.18e-24 | 95.9 |
| MS.gene93102.t1 | AT3G51880 | 47.619 | 105 | 50 | 1 | 94 | 198 | 48 | 147 | 1.18e-24 | 95.9 |
| MS.gene93102.t1 | AT3G51880 | 52.381 | 84 | 40 | 0 | 94 | 177 | 48 | 131 | 1.22e-24 | 95.1 |
| MS.gene93102.t1 | AT1G20696 | 53.922 | 102 | 43 | 3 | 83 | 182 | 20 | 119 | 2.02e-24 | 94.0 |
| MS.gene93102.t1 | AT1G20696 | 57.333 | 75 | 32 | 0 | 94 | 168 | 30 | 104 | 8.28e-24 | 92.8 |
| MS.gene93102.t1 | AT1G20696 | 57.333 | 75 | 32 | 0 | 94 | 168 | 30 | 104 | 8.30e-24 | 92.0 |
| MS.gene93102.t1 | AT2G34450 | 48.571 | 70 | 36 | 0 | 99 | 168 | 63 | 132 | 8.27e-19 | 79.7 |
| MS.gene93102.t1 | AT2G34450 | 48.571 | 70 | 36 | 0 | 99 | 168 | 63 | 132 | 8.27e-19 | 79.7 |
| MS.gene93102.t1 | AT2G34450 | 48.571 | 70 | 36 | 0 | 99 | 168 | 63 | 132 | 8.27e-19 | 79.7 |
| MS.gene93102.t1 | AT5G23420 | 61.667 | 60 | 22 | 1 | 4 | 62 | 15 | 74 | 3.28e-18 | 78.2 |
| MS.gene93102.t1 | AT2G34450 | 49.296 | 71 | 35 | 1 | 99 | 168 | 63 | 133 | 3.36e-17 | 75.5 |
| MS.gene93102.t1 | AT1G20696 | 46.154 | 78 | 39 | 2 | 107 | 182 | 1 | 77 | 3.63e-12 | 60.8 |
| MS.gene93102.t1 | AT1G20696 | 46.154 | 78 | 39 | 2 | 107 | 182 | 1 | 77 | 3.89e-12 | 60.8 |
Find 46 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGAGAAGAAGCCTTATT+TGG | 0.238707 | 1.1:+80783004 | MS.gene93102:intron |
| CTCTTAACATCCTTTGAATC+AGG | 0.239936 | 1.1:-80782732 | None:intergenic |
| TCAACAACCTTATCCAAATA+AGG | 0.266781 | 1.1:-80783017 | None:intergenic |
| CAAAAGAACCAAATGCAAAA+AGG | 0.273542 | 1.1:+80782512 | MS.gene93102:CDS |
| AGCGAAAGCACTGCCATCTT+TGG | 0.274022 | 1.1:-80782049 | None:intergenic |
| ATGGCAGTGCTTTCGCTAAA+TGG | 0.280098 | 1.1:+80782055 | MS.gene93102:CDS |
| TAAAGTTGGGAAAGGGAAAA+AGG | 0.356731 | 1.1:+80782537 | MS.gene93102:CDS |
| GGTGGACGCTTCGGCGCATT+AGG | 0.374547 | 1.1:-80782568 | None:intergenic |
| GAAGAAGCCTTATTTGGATA+AGG | 0.386677 | 1.1:+80783010 | MS.gene93102:CDS |
| TGCTGCTGCAGGAGAGGTGG+AGG | 0.407036 | 1.1:+80783343 | MS.gene93102:CDS |
| GTTACGAAATGGCAACGAAA+AGG | 0.426485 | 1.1:+80781983 | None:intergenic |
| TTACGAAATGGCAACGAAAA+GGG | 0.447058 | 1.1:+80781984 | None:intergenic |
| AGCTGCTGCTGCAGGAGAGG+TGG | 0.448405 | 1.1:+80783340 | MS.gene93102:CDS |
| AAAGCAGTTGGTGGACGCTT+CGG | 0.448751 | 1.1:-80782577 | None:intergenic |
| GACAAGGAAGCTGCTGCTGC+AGG | 0.462916 | 1.1:+80783332 | MS.gene93102:CDS |
| CTGATTCAAAGGATGTTAAG+AGG | 0.466487 | 1.1:+80782733 | MS.gene93102:CDS |
| TGCATGTCAATGAGTGCAAC+AGG | 0.479421 | 1.1:-80782180 | None:intergenic |
| GGGTTCTGATAAGGAAGATA+AGG | 0.479785 | 1.1:+80783295 | MS.gene93102:CDS |
| AAATAGGTTGGTAAGGAAGC+TGG | 0.492839 | 1.1:+80782848 | MS.gene93102:intron |
| GGATCAAGAGGGTTCTGATA+AGG | 0.494850 | 1.1:+80783286 | MS.gene93102:intron |
| GCCAAAATCAAAATGAATCT+CGG | 0.501868 | 1.1:+80782219 | MS.gene93102:CDS |
| GTTCTCGTTCGTGCCAAAGA+TGG | 0.507354 | 1.1:+80782036 | MS.gene93102:CDS |
| GTAAGGAAGCTGGTGAGAAG+TGG | 0.524391 | 1.1:+80782858 | MS.gene93102:CDS |
| CAGCTTCCTTGTCATCAGAC+TGG | 0.532712 | 1.1:-80783322 | None:intergenic |
| TCTTAACATCCTTTGAATCA+GGG | 0.535919 | 1.1:-80782731 | None:intergenic |
| GGATAAGGTTGTTGAACTGA+AGG | 0.538046 | 1.1:+80783025 | MS.gene93102:CDS |
| GAAGTGGAGGTCTCTGACTG+AGG | 0.540601 | 1.1:+80782874 | MS.gene93102:CDS |
| GGAAGCTAACCCTGATTCAA+AGG | 0.545294 | 1.1:+80782722 | MS.gene93102:CDS |
| ATGAAAACAAAGAAAGCAGT+TGG | 0.548460 | 1.1:-80782589 | None:intergenic |
| GGAAGCTGCTGCTGCAGGAG+AGG | 0.549573 | 1.1:+80783337 | MS.gene93102:CDS |
| AAAACAAAGAAAGCAGTTGG+TGG | 0.566440 | 1.1:-80782586 | None:intergenic |
| AGTTAACTGATGAAGAGTAG+TGG | 0.571245 | 1.1:+80783366 | MS.gene93102:CDS |
| AAAAGGGCTAAAGTTGGGAA+AGG | 0.581404 | 1.1:+80782529 | MS.gene93102:CDS |
| AGCAGCATTATACAATTCCA+TGG | 0.595262 | 1.1:-80783063 | None:intergenic |
| AGGAAGCTGGTGAGAAGTGG+AGG | 0.606568 | 1.1:+80782861 | MS.gene93102:CDS |
| GGCAGAATATGAGAAGGCCA+TGG | 0.615072 | 1.1:+80783046 | MS.gene93102:CDS |
| TGATTCAAAGGATGTTAAGA+GGG | 0.616338 | 1.1:+80782734 | MS.gene93102:CDS |
| AAAGGGCTAAAGTTGGGAAA+GGG | 0.618574 | 1.1:+80782530 | MS.gene93102:CDS |
| GCTGTATGTATAGGATCAAG+AGG | 0.620076 | 1.1:+80783274 | MS.gene93102:intron |
| TGAAGCGGAACGAGAATCGA+CGG | 0.630596 | 1.1:-80782013 | None:intergenic |
| GGCACGAACGAGAACTGAAG+CGG | 0.641201 | 1.1:-80782028 | None:intergenic |
| GGAAGGCCAGTCTGATGACA+AGG | 0.644830 | 1.1:+80783316 | MS.gene93102:CDS |
| TCTGATAAGGAAGATAAGGA+AGG | 0.664708 | 1.1:+80783299 | MS.gene93102:CDS |
| ACTGAAGGCAGAATATGAGA+AGG | 0.674706 | 1.1:+80783040 | MS.gene93102:CDS |
| CTGTATGTATAGGATCAAGA+GGG | 0.690024 | 1.1:+80783275 | MS.gene93102:intron |
| CTGAAGTGAAGAAACCCGAG+AGG | 0.719762 | 1.1:+80782375 | MS.gene93102:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATTAGTACTAATTA+GGG | - | chr1.1:80782268-80782287 | None:intergenic | 10.0% |
| !!! | GTATTTGATTTTATTTAATT+TGG | + | chr1.1:80782320-80782339 | MS.gene93102:intron | 10.0% |
| !!! | TTTATTTTTTGAAATATTGT+AGG | + | chr1.1:80782476-80782495 | MS.gene93102:intron | 10.0% |
| !! | AAAAATTCACAAACTAAAAT+TGG | - | chr1.1:80782414-80782433 | None:intergenic | 15.0% |
| !! | AAAATTCACAAACTAAAATT+GGG | - | chr1.1:80782413-80782432 | None:intergenic | 15.0% |
| !! | GATAATAATTAGTACTAATT+AGG | - | chr1.1:80782269-80782288 | None:intergenic | 15.0% |
| !! | TTACTTATATTGTGAAAAAT+AGG | + | chr1.1:80782832-80782851 | MS.gene93102:intron | 15.0% |
| !! | AAATTCACAAACTAAAATTG+GGG | - | chr1.1:80782412-80782431 | None:intergenic | 20.0% |
| !! | TGATATGGTTAAAATTGTTT+AGG | + | chr1.1:80782986-80783005 | MS.gene93102:intron | 20.0% |
| !! | TTATATTGTGAAAAATAGGT+TGG | + | chr1.1:80782836-80782855 | MS.gene93102:intron | 20.0% |
| !!! | TCTGGTTTTTATTAGTATTT+AGG | + | chr1.1:80782437-80782456 | MS.gene93102:intron | 20.0% |
| !!! | TGAGTTTAGAAAGATTTTTA+AGG | + | chr1.1:80782701-80782720 | MS.gene93102:CDS | 20.0% |
| !!! | TGTTTTGATTTGTTTTGATT+TGG | + | chr1.1:80782925-80782944 | MS.gene93102:intron | 20.0% |
| !!! | TTTTCACAATATAAGTAACA+TGG | - | chr1.1:80782830-80782849 | None:intergenic | 20.0% |
| ! | AAAAGAACCAAATGCAAAAA+GGG | + | chr1.1:80782513-80782532 | MS.gene93102:CDS | 25.0% |
| ! | AATTCACAAACTAAAATTGG+GGG | - | chr1.1:80782411-80782430 | None:intergenic | 25.0% |
| ! | GCTGATATAATGTTATGATA+TGG | + | chr1.1:80782971-80782990 | MS.gene93102:intron | 25.0% |
| ! | TGTTTGATTAAGTTATCCAA+GGG | + | chr1.1:80782793-80782812 | MS.gene93102:intron | 25.0% |
| ! | TTGTTTGATTAAGTTATCCA+AGG | + | chr1.1:80782792-80782811 | MS.gene93102:intron | 25.0% |
| !! | GAAAAAGAGTATAAACGAAA+TGG | - | chr1.1:80782106-80782125 | None:intergenic | 25.0% |
| !! | TGTTCTGTTTTGTAATGTTT+TGG | + | chr1.1:80782630-80782649 | MS.gene93102:intron | 25.0% |
| !!! | AGTGAAGCATGTTTTATTTT+GGG | + | chr1.1:80783192-80783211 | MS.gene93102:intron | 25.0% |
| !!! | CTTTCTTTGTTTTCATGTAA+GGG | + | chr1.1:80782596-80782615 | MS.gene93102:intron | 25.0% |
| AAACAAAATTAGAAGCCCAA+AGG | - | chr1.1:80783113-80783132 | None:intergenic | 30.0% | |
| ATGAAAACAAAGAAAGCAGT+TGG | - | chr1.1:80782592-80782611 | None:intergenic | 30.0% | |
| CAAAAGAACCAAATGCAAAA+AGG | + | chr1.1:80782512-80782531 | MS.gene93102:CDS | 30.0% | |
| GCCAAAATCAAAATGAATCT+CGG | + | chr1.1:80782219-80782238 | MS.gene93102:CDS | 30.0% | |
| TCAACAACCTTATCCAAATA+AGG | - | chr1.1:80783020-80783039 | None:intergenic | 30.0% | |
| TCTTAACATCCTTTGAATCA+GGG | - | chr1.1:80782734-80782753 | None:intergenic | 30.0% | |
| TGATTCAAAGGATGTTAAGA+GGG | + | chr1.1:80782734-80782753 | MS.gene93102:CDS | 30.0% | |
| TTTGCTTTCTTTACTTAAGC+TGG | + | chr1.1:80783153-80783172 | MS.gene93102:intron | 30.0% | |
| ! | AAGTGAAGTATGTTTTCCTT+TGG | + | chr1.1:80783094-80783113 | MS.gene93102:intron | 30.0% |
| ! | AGTGAAGTATGTTTTCCTTT+GGG | + | chr1.1:80783095-80783114 | MS.gene93102:intron | 30.0% |
| !! | AGTTTGTGAATTTTTGACTC+TGG | + | chr1.1:80782419-80782438 | MS.gene93102:intron | 30.0% |
| !! | GATTGGTTTGATTTGTTTCA+GGG | + | chr1.1:80782677-80782696 | MS.gene93102:intron | 30.0% |
| !! | TGATTGGTTTGATTTGTTTC+AGG | + | chr1.1:80782676-80782695 | MS.gene93102:intron | 30.0% |
| !! | TTGTGAAAAATAGGTTGGTA+AGG | + | chr1.1:80782841-80782860 | MS.gene93102:intron | 30.0% |
| !! | TTTGTTTTCATGTAAGGGTT+TGG | + | chr1.1:80782601-80782620 | MS.gene93102:intron | 30.0% |
| !!! | ACCGAGATTCATTTTGATTT+TGG | - | chr1.1:80782223-80782242 | None:intergenic | 30.0% |
| !!! | GAGTGAAGCATGTTTTATTT+TGG | + | chr1.1:80783191-80783210 | MS.gene93102:intron | 30.0% |
| !!! | GCATTTGGTTCTTTTGAATT+TGG | - | chr1.1:80782508-80782527 | None:intergenic | 30.0% |
| !!! | GCTTTCTTTGTTTTCATGTA+AGG | + | chr1.1:80782595-80782614 | MS.gene93102:intron | 30.0% |
| !!! | GTTTTGGTTCTATAGTTTGA+GGG | + | chr1.1:80782646-80782665 | MS.gene93102:intron | 30.0% |
| !!! | TCATTTTGATTTTGGCTTCA+AGG | - | chr1.1:80782215-80782234 | None:intergenic | 30.0% |
| !!! | TGTTTTGGTTCTATAGTTTG+AGG | + | chr1.1:80782645-80782664 | MS.gene93102:intron | 30.0% |
| !!! | TTTTGGTTCTATAGTTTGAG+GGG | + | chr1.1:80782647-80782666 | MS.gene93102:intron | 30.0% |
| AAAACAAAGAAAGCAGTTGG+TGG | - | chr1.1:80782589-80782608 | None:intergenic | 35.0% | |
| AATGCAAAAAGGGCTAAAGT+TGG | + | chr1.1:80782523-80782542 | MS.gene93102:CDS | 35.0% | |
| AGCAGCATTATACAATTCCA+TGG | - | chr1.1:80783066-80783085 | None:intergenic | 35.0% | |
| ATGCAAAAAGGGCTAAAGTT+GGG | + | chr1.1:80782524-80782543 | MS.gene93102:CDS | 35.0% | |
| CATGGTCAATAATAAACCCT+TGG | - | chr1.1:80782812-80782831 | None:intergenic | 35.0% | |
| CTCTTAACATCCTTTGAATC+AGG | - | chr1.1:80782735-80782754 | None:intergenic | 35.0% | |
| CTGATTCAAAGGATGTTAAG+AGG | + | chr1.1:80782733-80782752 | MS.gene93102:CDS | 35.0% | |
| CTGTATGTATAGGATCAAGA+GGG | + | chr1.1:80783275-80783294 | MS.gene93102:intron | 35.0% | |
| TAAAGTTGGGAAAGGGAAAA+AGG | + | chr1.1:80782537-80782556 | MS.gene93102:CDS | 35.0% | |
| TCTGATAAGGAAGATAAGGA+AGG | + | chr1.1:80783299-80783318 | MS.gene93102:CDS | 35.0% | |
| TTTGCTCTCTTTACTTAAGC+TGG | + | chr1.1:80783250-80783269 | MS.gene93102:intron | 35.0% | |
| ! | ACTTTAGCCCTTTTTGCATT+TGG | - | chr1.1:80782523-80782542 | None:intergenic | 35.0% |
| !! | GAAGAAGCCTTATTTGGATA+AGG | + | chr1.1:80783010-80783029 | MS.gene93102:CDS | 35.0% |
| !! | TTAGGAGAAGAAGCCTTATT+TGG | + | chr1.1:80783004-80783023 | MS.gene93102:intron | 35.0% |
| AAAAGGGCTAAAGTTGGGAA+AGG | + | chr1.1:80782529-80782548 | MS.gene93102:CDS | 40.0% | |
| AAAGGGCTAAAGTTGGGAAA+GGG | + | chr1.1:80782530-80782549 | MS.gene93102:CDS | 40.0% | |
| ACTGAAGGCAGAATATGAGA+AGG | + | chr1.1:80783040-80783059 | MS.gene93102:CDS | 40.0% | |
| GCTGTATGTATAGGATCAAG+AGG | + | chr1.1:80783274-80783293 | MS.gene93102:intron | 40.0% | |
| GGATAAGGTTGTTGAACTGA+AGG | + | chr1.1:80783025-80783044 | MS.gene93102:CDS | 40.0% | |
| GTTTGAGGGGTTTAGTTGAT+TGG | + | chr1.1:80782660-80782679 | MS.gene93102:intron | 40.0% | |
| TGGGAAAGGGAAAAAGGTTA+AGG | + | chr1.1:80782543-80782562 | MS.gene93102:CDS | 40.0% | |
| ! | GGGTTCTGATAAGGAAGATA+AGG | + | chr1.1:80783295-80783314 | MS.gene93102:CDS | 40.0% |
| !! | AAATAGGTTGGTAAGGAAGC+TGG | + | chr1.1:80782848-80782867 | MS.gene93102:intron | 40.0% |
| !! | TAAGCTGGTGCTGTATGTAT+AGG | + | chr1.1:80783265-80783284 | MS.gene93102:intron | 40.0% |
| ATGGCAGTGCTTTCGCTAAA+TGG | + | chr1.1:80782055-80782074 | MS.gene93102:CDS | 45.0% | |
| GGAAGCTAACCCTGATTCAA+AGG | + | chr1.1:80782722-80782741 | MS.gene93102:CDS | 45.0% | |
| TGCATGTCAATGAGTGCAAC+AGG | - | chr1.1:80782183-80782202 | None:intergenic | 45.0% | |
| ! | GGATCAAGAGGGTTCTGATA+AGG | + | chr1.1:80783286-80783305 | MS.gene93102:intron | 45.0% |
| ! | GGGGAAATTTTTCACCTCTC+GGG | - | chr1.1:80782392-80782411 | None:intergenic | 45.0% |
| ! | GGGGGAAATTTTTCACCTCT+CGG | - | chr1.1:80782393-80782412 | None:intergenic | 45.0% |
| !! | AAGCTGGTGCTGTATGCATA+GGG | + | chr1.1:80783169-80783188 | MS.gene93102:intron | 45.0% |
| !! | TAAGCTGGTGCTGTATGCAT+AGG | + | chr1.1:80783168-80783187 | MS.gene93102:intron | 45.0% |
| CAGCTTCCTTGTCATCAGAC+TGG | - | chr1.1:80783325-80783344 | None:intergenic | 50.0% | |
| CTGAAGTGAAGAAACCCGAG+AGG | + | chr1.1:80782375-80782394 | MS.gene93102:CDS | 50.0% | |
| GGCAGAATATGAGAAGGCCA+TGG | + | chr1.1:80783046-80783065 | MS.gene93102:CDS | 50.0% | |
| GTAAGGAAGCTGGTGAGAAG+TGG | + | chr1.1:80782858-80782877 | MS.gene93102:CDS | 50.0% | |
| GTTCTCGTTCGTGCCAAAGA+TGG | + | chr1.1:80782036-80782055 | MS.gene93102:CDS | 50.0% | |
| TGAAGCGGAACGAGAATCGA+CGG | - | chr1.1:80782016-80782035 | None:intergenic | 50.0% | |
| !! | AAAGCAGTTGGTGGACGCTT+CGG | - | chr1.1:80782580-80782599 | None:intergenic | 50.0% |
| !! | AGCGAAAGCACTGCCATCTT+TGG | - | chr1.1:80782052-80782071 | None:intergenic | 50.0% |
| AGGAAGCTGGTGAGAAGTGG+AGG | + | chr1.1:80782861-80782880 | MS.gene93102:CDS | 55.0% | |
| GAAGTGGAGGTCTCTGACTG+AGG | + | chr1.1:80782874-80782893 | MS.gene93102:CDS | 55.0% | |
| GGAAGGCCAGTCTGATGACA+AGG | + | chr1.1:80783316-80783335 | MS.gene93102:CDS | 55.0% | |
| GGCACGAACGAGAACTGAAG+CGG | - | chr1.1:80782031-80782050 | None:intergenic | 55.0% | |
| GACAAGGAAGCTGCTGCTGC+AGG | + | chr1.1:80783332-80783351 | MS.gene93102:CDS | 60.0% | |
| AGCTGCTGCTGCAGGAGAGG+TGG | + | chr1.1:80783340-80783359 | MS.gene93102:CDS | 65.0% | |
| GGAAGCTGCTGCTGCAGGAG+AGG | + | chr1.1:80783337-80783356 | MS.gene93102:CDS | 65.0% | |
| GGTGGACGCTTCGGCGCATT+AGG | - | chr1.1:80782571-80782590 | None:intergenic | 65.0% | |
| TGCTGCTGCAGGAGAGGTGG+AGG | + | chr1.1:80783343-80783362 | MS.gene93102:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 80781991 | 80783385 | 80781991 | ID=MS.gene93102 |
| chr1.1 | mRNA | 80781991 | 80783385 | 80781991 | ID=MS.gene93102.t1;Parent=MS.gene93102 |
| chr1.1 | exon | 80781991 | 80782076 | 80781991 | ID=MS.gene93102.t1.exon1;Parent=MS.gene93102.t1 |
| chr1.1 | CDS | 80781991 | 80782076 | 80781991 | ID=cds.MS.gene93102.t1;Parent=MS.gene93102.t1 |
| chr1.1 | exon | 80782158 | 80782240 | 80782158 | ID=MS.gene93102.t1.exon2;Parent=MS.gene93102.t1 |
| chr1.1 | CDS | 80782158 | 80782240 | 80782158 | ID=cds.MS.gene93102.t1;Parent=MS.gene93102.t1 |
| chr1.1 | exon | 80782351 | 80782396 | 80782351 | ID=MS.gene93102.t1.exon3;Parent=MS.gene93102.t1 |
| chr1.1 | CDS | 80782351 | 80782396 | 80782351 | ID=cds.MS.gene93102.t1;Parent=MS.gene93102.t1 |
| chr1.1 | exon | 80782498 | 80782611 | 80782498 | ID=MS.gene93102.t1.exon4;Parent=MS.gene93102.t1 |
| chr1.1 | CDS | 80782498 | 80782611 | 80782498 | ID=cds.MS.gene93102.t1;Parent=MS.gene93102.t1 |
| chr1.1 | exon | 80782698 | 80782755 | 80782698 | ID=MS.gene93102.t1.exon5;Parent=MS.gene93102.t1 |
| chr1.1 | CDS | 80782698 | 80782755 | 80782698 | ID=cds.MS.gene93102.t1;Parent=MS.gene93102.t1 |
| chr1.1 | exon | 80782854 | 80782898 | 80782854 | ID=MS.gene93102.t1.exon6;Parent=MS.gene93102.t1 |
| chr1.1 | CDS | 80782854 | 80782898 | 80782854 | ID=cds.MS.gene93102.t1;Parent=MS.gene93102.t1 |
| chr1.1 | exon | 80783008 | 80783100 | 80783008 | ID=MS.gene93102.t1.exon7;Parent=MS.gene93102.t1 |
| chr1.1 | CDS | 80783008 | 80783100 | 80783008 | ID=cds.MS.gene93102.t1;Parent=MS.gene93102.t1 |
| chr1.1 | exon | 80783287 | 80783385 | 80783287 | ID=MS.gene93102.t1.exon8;Parent=MS.gene93102.t1 |
| chr1.1 | CDS | 80783287 | 80783385 | 80783287 | ID=cds.MS.gene93102.t1;Parent=MS.gene93102.t1 |
| Gene Sequence |
| Protein sequence |
