AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003605.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003605.01.T01 MTR_1g066720 87.143 70 9 0 1 70 1 70 4.22e-27 96.7
MsG0180003605.01.T01 MTR_7g100860 46.835 79 36 3 5 82 9 82 2.16e-12 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 99 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAAAGCCTAAAGAAATTT+TGG 0.146013 1:-65102359 MsG0180003605.01.T01:five_prime_UTR
CAGAGAAAGCTTGGGTAAAA+TGG 0.173836 1:-65101943 MsG0180003605.01.T01:CDS
TATGATCAAATTGTAATTAA+AGG 0.232259 1:-65101532 MsG0180003605.01.T01:three_prime_UTR
GACTTAAAATTGCTTGATAA+TGG 0.265147 1:-65101401 MsG0180003605.01.T01:three_prime_UTR
GAACTAGGGAATAGAATATT+TGG 0.268064 1:-65101609 MsG0180003605.01.T01:three_prime_UTR
AGAATGAGGGAGTTTGAATT+AGG 0.276395 1:-65101366 MsG0180003605.01.T01:three_prime_UTR
AGGAAGCTTCTAAAGTTAAA+TGG 0.279970 1:-65100664 MsG0180003605.01.T01:three_prime_UTR
AATATTGTGTTTACGAGAAT+TGG 0.281799 1:-65100863 MsG0180003605.01.T01:three_prime_UTR
GTAGACCTATGCTCCATATT+TGG 0.304289 1:+65102330 None:intergenic
TTTCATCACTTGTGAGATTA+GGG 0.305371 1:-65101090 MsG0180003605.01.T01:three_prime_UTR
CAAACTTAGGATCGTTTATA+TGG 0.314967 1:+65102408 None:intergenic
GTTTCATCACTTGTGAGATT+AGG 0.326125 1:-65101091 MsG0180003605.01.T01:three_prime_UTR
CATATAAACGATCCTAAGTT+TGG 0.348601 1:-65102407 MsG0180003605.01.T01:five_prime_UTR
GTGCTACTTTGGCACAAATA+AGG 0.353560 1:-65101911 MsG0180003605.01.T01:exon
ATAACACGCTTTCTCATGTT+TGG 0.359114 1:+65101012 None:intergenic
GTATGCTCCAAAATTTCTTT+AGG 0.369004 1:+65102352 None:intergenic
GTGGGGATCCTATGTGTGTG+GGG 0.372845 1:+65102459 None:intergenic
TCTCGTAAACACAATATTCA+TGG 0.389399 1:+65100868 None:intergenic
TTATTGTCTAATAACATAGA+AGG 0.390294 1:+65101868 None:intergenic
TTTATTTCTTCTATGTTACT+AGG 0.391196 1:-65101714 MsG0180003605.01.T01:three_prime_UTR
ATCCACACCCCACCAGTATC+TGG 0.400362 1:-65102623 MsG0180003605.01.T01:five_prime_UTR
AGAGTTGGGATATTATTTCA+TGG 0.411030 1:-65100577 MsG0180003605.01.T01:three_prime_UTR
GGAACCGATGAGTGTGTCTC+AGG 0.411792 1:+65102016 None:intergenic
GTATATGAAATTGATTATAA+AGG 0.417782 1:-65102040 MsG0180003605.01.T01:CDS
TTGTTTGTTTGTTATGTTGT+GGG 0.419139 1:-65101784 MsG0180003605.01.T01:three_prime_UTR
AATTATAAGTTGCCAGATAC+TGG 0.423606 1:+65102611 None:intergenic
GGGTGGGGATCCTATGTGTG+TGG 0.429030 1:+65102457 None:intergenic
TATATAATGAATAGAGAGTT+GGG 0.434174 1:-65100591 MsG0180003605.01.T01:three_prime_UTR
TGGGGATCCTATGTGTGTGG+GGG 0.439039 1:+65102460 None:intergenic
AGACAACAAGCTGCGCTGCT+AGG 0.441224 1:+65100823 None:intergenic
TAAATTTAATTCTCCACTGC+AGG 0.443737 1:-65100708 MsG0180003605.01.T01:three_prime_UTR
AGAGAAAGCTTGGGTAAAAT+GGG 0.449533 1:-65101942 MsG0180003605.01.T01:CDS
GGTGGGGATCCTATGTGTGT+GGG 0.452633 1:+65102458 None:intergenic
CAGATTCTTCTTCGAAGTAA+AGG 0.458523 1:+65100521 None:intergenic
CAATCTTAAAAGTTGCGTTA+AGG 0.461386 1:-65101042 MsG0180003605.01.T01:three_prime_UTR
GGTTAAATGCAGAGAGAATG+AGG 0.461516 1:-65101380 MsG0180003605.01.T01:three_prime_UTR
ACTAAATTACCTACATGAAA+AGG 0.467889 1:-65101631 MsG0180003605.01.T01:three_prime_UTR
GGGTGTTAGTAGTGCTACTT+TGG 0.479285 1:-65101922 MsG0180003605.01.T01:CDS
GAGATTAAAGTCTAGTGTGT+TGG 0.480513 1:-65101432 MsG0180003605.01.T01:three_prime_UTR
GGGGATCCTATGTGTGTGGG+GGG 0.483039 1:+65102461 None:intergenic
TGTAGGTAATTTAGTGTTCG+AGG 0.485749 1:+65101639 None:intergenic
ATTATTAGATGTAGTGGGTG+GGG 0.489776 1:+65102442 None:intergenic
TAGTCAAAACAGAGAAAGCT+TGG 0.491673 1:-65101952 MsG0180003605.01.T01:CDS
GAGAAAGAAGCATGTTGTGA+AGG 0.497538 1:+65102308 None:intergenic
AAATTAATTATTAGATGTAG+TGG 0.506494 1:+65102436 None:intergenic
AAAAGTTGCGTTAAGGAAAG+TGG 0.507798 1:-65101035 MsG0180003605.01.T01:three_prime_UTR
CTAGAGATGTGAGGAGAACA+AGG 0.508751 1:+65102277 None:intergenic
TGCGGATTGAATCTAGTTGA+AGG 0.510912 1:-65101312 MsG0180003605.01.T01:three_prime_UTR
TGTTCTCCTCACATCTCTAG+AGG 0.514343 1:-65102274 MsG0180003605.01.T01:CDS
TCAATTTCATATACCTCTGA+AGG 0.518557 1:+65102049 None:intergenic
ACAACAATGTCATGTCTCCT+AGG 0.519923 1:-65100892 MsG0180003605.01.T01:three_prime_UTR
CAATTTGTACTCTATGTAGA+AGG 0.521728 1:+65100921 None:intergenic
ATATATAATGAATAGAGAGT+TGG 0.523144 1:-65100592 MsG0180003605.01.T01:three_prime_UTR
AATGGTTACAACTCAGTCAA+TGG 0.528773 1:+65101118 None:intergenic
TTGTTCGAGGCATGAGTGCA+TGG 0.532132 1:-65101683 MsG0180003605.01.T01:three_prime_UTR
GCAAGAACCACAGCTAAGGC+TGG 0.532571 1:+65102493 None:intergenic
ATAAATATCATTCAATTCCA+AGG 0.532813 1:-65101982 MsG0180003605.01.T01:CDS
TACCTACATGAAAAGGAACT+AGG 0.534139 1:-65101624 MsG0180003605.01.T01:three_prime_UTR
TTTGTTTGTTTGTTATGTTG+TGG 0.536048 1:-65101785 MsG0180003605.01.T01:three_prime_UTR
ATGTGTATAAAGCCAAACTT+AGG 0.537187 1:+65102395 None:intergenic
CTGCAGGTTAAGAAAGTCCA+TGG 0.545753 1:-65100692 MsG0180003605.01.T01:three_prime_UTR
TGGACTTTCTTAACCTGCAG+TGG 0.546814 1:+65100695 None:intergenic
AGTCAAAACAGAGAAAGCTT+GGG 0.553480 1:-65101951 MsG0180003605.01.T01:CDS
ACCTACATGAAAAGGAACTA+GGG 0.555157 1:-65101623 MsG0180003605.01.T01:three_prime_UTR
AATTATTAGATGTAGTGGGT+GGG 0.555622 1:+65102441 None:intergenic
TGATATTTATGATGAGGAGG+AGG 0.556179 1:+65101995 None:intergenic
AAGTTAAATGGACTACTACT+TGG 0.556896 1:-65100652 MsG0180003605.01.T01:three_prime_UTR
ACAAGTGATGAAACTCTCAA+TGG 0.557544 1:+65101100 None:intergenic
TGCACAATATTCGTCACAAG+TGG 0.560525 1:+65101279 None:intergenic
TAGAAGCTTCCTCTCATCCA+TGG 0.563986 1:+65100675 None:intergenic
ACTTAGGATCGTTTATATGG+TGG 0.565051 1:+65102411 None:intergenic
TATATATACTATCTCTCGAA+AGG 0.567744 1:+65100608 None:intergenic
AATTAATTATTAGATGTAGT+GGG 0.568637 1:+65102437 None:intergenic
GTTAAATGCAGAGAGAATGA+GGG 0.569260 1:-65101379 MsG0180003605.01.T01:three_prime_UTR
GCGGATTGAATCTAGTTGAA+GGG 0.573785 1:-65101311 MsG0180003605.01.T01:three_prime_UTR
TGCCAGATACTGGTGGGGTG+TGG 0.573869 1:+65102621 None:intergenic
TAAGAAAGTCCATGGATGAG+AGG 0.574956 1:-65100684 MsG0180003605.01.T01:three_prime_UTR
GCATACCAAATATGGAGCAT+AGG 0.583047 1:-65102335 MsG0180003605.01.T01:exon
GAATGATATTTATGATGAGG+AGG 0.584637 1:+65101992 None:intergenic
TACTCTATGTAGAAGGTCAA+CGG 0.584644 1:+65100928 None:intergenic
TAATTATTAGATGTAGTGGG+TGG 0.584867 1:+65102440 None:intergenic
ATAAGTTGCCAGATACTGGT+GGG 0.587448 1:+65102615 None:intergenic
AAATTACAGATTAGAGACAT+TGG 0.587844 1:-65102525 MsG0180003605.01.T01:five_prime_UTR
TCAGGCAAGAACCACAGCTA+AGG 0.588473 1:+65102489 None:intergenic
TATTGTCTAATAACATAGAA+GGG 0.589899 1:+65101869 None:intergenic
CTAAATATATACACCTCTCA+CGG 0.595047 1:-65101821 MsG0180003605.01.T01:three_prime_UTR
TGTTCAATCTAAACCGTGAG+AGG 0.605993 1:+65101808 None:intergenic
AGATGCAATATTGCCTTCAG+AGG 0.609416 1:-65102062 MsG0180003605.01.T01:CDS
GAATGAGCCAGCCTTAGCTG+TGG 0.610693 1:-65102500 MsG0180003605.01.T01:five_prime_UTR
TATAAGTTGCCAGATACTGG+TGG 0.614662 1:+65102614 None:intergenic
GAACCGATGAGTGTGTCTCA+GGG 0.623583 1:+65102017 None:intergenic
AGGCCCTGAGACACACTCAT+CGG 0.649143 1:-65102020 MsG0180003605.01.T01:CDS
ATTGAATGATATTTATGATG+AGG 0.654859 1:+65101989 None:intergenic
AGACATAGCTAACATTAATG+CGG 0.666087 1:-65101330 MsG0180003605.01.T01:three_prime_UTR
TAAGTTGCCAGATACTGGTG+GGG 0.674193 1:+65102616 None:intergenic
AACAAACCTCTAGAGATGTG+AGG 0.676401 1:+65102268 None:intergenic
ATTTCTTCTATGTTACTAGG+CGG 0.696002 1:-65101711 MsG0180003605.01.T01:three_prime_UTR
AACACAATATTCATGGACCT+AGG 0.716462 1:+65100875 None:intergenic
GGCAACTTATAATTGCTGTG+TGG 0.722703 1:-65102602 MsG0180003605.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAATTGTATATTAC+AGG - Chr1:65101020-65101039 MsG0180003605.01.T01:three_prime_UTR 10.0%
!! AAATTAATTATTAGATGTAG+TGG + Chr1:65100678-65100697 None:intergenic 15.0%
!! AAGTTTAAACTTATAATGTT+AGG - Chr1:65100935-65100954 MsG0180003605.01.T01:three_prime_UTR 15.0%
!! AATTAATTATTAGATGTAGT+GGG + Chr1:65100677-65100696 None:intergenic 15.0%
!! GTATATGAAATTGATTATAA+AGG - Chr1:65101071-65101090 MsG0180003605.01.T01:three_prime_UTR 15.0%
!! TAAAAATGATTATTTCATGT+AGG - Chr1:65101856-65101875 MsG0180003605.01.T01:three_prime_UTR 15.0%
!! TATGATCAAATTGTAATTAA+AGG - Chr1:65101579-65101598 MsG0180003605.01.T01:three_prime_UTR 15.0%
!! ATAAATATCATTCAATTCCA+AGG - Chr1:65101129-65101148 MsG0180003605.01.T01:three_prime_UTR 20.0%
!! ATACAATCAAAAACAGTTAT+AGG + Chr1:65102564-65102583 None:intergenic 20.0%
!! ATATATAATGAATAGAGAGT+TGG - Chr1:65102519-65102538 MsG0180003605.01.T01:five_prime_UTR 20.0%
!! ATTGAATGATATTTATGATG+AGG + Chr1:65101125-65101144 None:intergenic 20.0%
!! TATATAATGAATAGAGAGTT+GGG - Chr1:65102520-65102539 MsG0180003605.01.T01:five_prime_UTR 20.0%
!! TATTGTCTAATAACATAGAA+GGG + Chr1:65101245-65101264 None:intergenic 20.0%
!! TTATTGTCTAATAACATAGA+AGG + Chr1:65101246-65101265 None:intergenic 20.0%
!!! AGTAAGTTGTATAATTTTGT+TGG - Chr1:65100970-65100989 MsG0180003605.01.T01:three_prime_UTR 20.0%
!!! TATAACTGTTTTTGATTGTA+TGG - Chr1:65102563-65102582 MsG0180003605.01.T01:five_prime_UTR 20.0%
!!! TCAAAAGTGTCAAAAATAAA+TGG + Chr1:65102146-65102165 None:intergenic 20.0%
!!! TTAAAAGCCTAAAGAAATTT+TGG - Chr1:65100752-65100771 MsG0180003605.01.T01:three_prime_UTR 20.0%
!!! TTTATTTCTTCTATGTTACT+AGG - Chr1:65101397-65101416 MsG0180003605.01.T01:three_prime_UTR 20.0%
! AAATTACAGATTAGAGACAT+TGG - Chr1:65100586-65100605 MsG0180003605.01.T01:three_prime_UTR 25.0%
! AATATTGTGTTTACGAGAAT+TGG - Chr1:65102248-65102267 MsG0180003605.01.T01:intron 25.0%
! ACTAAATTACCTACATGAAA+AGG - Chr1:65101480-65101499 MsG0180003605.01.T01:three_prime_UTR 25.0%
! GACTTAAAATTGCTTGATAA+TGG - Chr1:65101710-65101729 MsG0180003605.01.T01:three_prime_UTR 25.0%
! TATATATACTATCTCTCGAA+AGG + Chr1:65102506-65102525 None:intergenic 25.0%
!! TTAGACAATAATTTTGTTCG+AGG - Chr1:65101255-65101274 MsG0180003605.01.T01:three_prime_UTR 25.0%
!!! TTGTTTGTTTGTTATGTTGT+GGG - Chr1:65101327-65101346 MsG0180003605.01.T01:three_prime_UTR 25.0%
!!! TTTGGTATTTTTGACACTTT+TGG - Chr1:65101520-65101539 MsG0180003605.01.T01:three_prime_UTR 25.0%
!!! TTTGTTTGTTTGTTATGTTG+TGG - Chr1:65101326-65101345 MsG0180003605.01.T01:three_prime_UTR 25.0%
AATTATAAGTTGCCAGATAC+TGG + Chr1:65100503-65100522 None:intergenic 30.0%
AGAAACCTAACAAAAAAGAC+AGG - Chr1:65101891-65101910 MsG0180003605.01.T01:three_prime_UTR 30.0%
AGACATAGCTAACATTAATG+CGG - Chr1:65101781-65101800 MsG0180003605.01.T01:three_prime_UTR 30.0%
AGAGTTGGGATATTATTTCA+TGG - Chr1:65102534-65102553 MsG0180003605.01.T01:five_prime_UTR 30.0%
ATGTGTATAAAGCCAAACTT+AGG + Chr1:65100719-65100738 None:intergenic 30.0%
ATTTCTTCTATGTTACTAGG+CGG - Chr1:65101400-65101419 MsG0180003605.01.T01:three_prime_UTR 30.0%
CAAACTTAGGATCGTTTATA+TGG + Chr1:65100706-65100725 None:intergenic 30.0%
CAATCTTAAAAGTTGCGTTA+AGG - Chr1:65102069-65102088 MsG0180003605.01.T01:CDS 30.0%
CAATTTGTACTCTATGTAGA+AGG + Chr1:65102193-65102212 None:intergenic 30.0%
CATATAAACGATCCTAAGTT+TGG - Chr1:65100704-65100723 MsG0180003605.01.T01:three_prime_UTR 30.0%
CTAAATATATACACCTCTCA+CGG - Chr1:65101290-65101309 MsG0180003605.01.T01:three_prime_UTR 30.0%
GAACTAGGGAATAGAATATT+TGG - Chr1:65101502-65101521 MsG0180003605.01.T01:three_prime_UTR 30.0%
GAATGATATTTATGATGAGG+AGG + Chr1:65101122-65101141 None:intergenic 30.0%
GTATGCTCCAAAATTTCTTT+AGG + Chr1:65100762-65100781 None:intergenic 30.0%
TAAATTTAATTCTCCACTGC+AGG - Chr1:65102403-65102422 MsG0180003605.01.T01:five_prime_UTR 30.0%
TCAATTTCATATACCTCTGA+AGG + Chr1:65101065-65101084 None:intergenic 30.0%
TCTCGTAAACACAATATTCA+TGG + Chr1:65102246-65102265 None:intergenic 30.0%
TTTCATCACTTGTGAGATTA+GGG - Chr1:65102021-65102040 MsG0180003605.01.T01:CDS 30.0%
! CTTTTGGATAAATATTCTGC+TGG - Chr1:65101536-65101555 MsG0180003605.01.T01:three_prime_UTR 30.0%
! TAATTATTAGATGTAGTGGG+TGG + Chr1:65100674-65100693 None:intergenic 30.0%
!! AAGTTAAATGGACTACTACT+TGG - Chr1:65102459-65102478 MsG0180003605.01.T01:five_prime_UTR 30.0%
!! AATTATTAGATGTAGTGGGT+GGG + Chr1:65100673-65100692 None:intergenic 30.0%
!! AGGAAGCTTCTAAAGTTAAA+TGG - Chr1:65102447-65102466 MsG0180003605.01.T01:five_prime_UTR 30.0%
!!! AATTGGTTTTCCATCCAAAA+AGG - Chr1:65102265-65102284 MsG0180003605.01.T01:intron 30.0%
!!! ACAGGATCAAATTAGTTTTC+AGG - Chr1:65101909-65101928 MsG0180003605.01.T01:exon 30.0%
!!! ATTTTGGAGCATACCAAATA+TGG - Chr1:65100768-65100787 MsG0180003605.01.T01:three_prime_UTR 30.0%
!!! GTTTTGACTAAGTTTTTCCT+TGG + Chr1:65101149-65101168 None:intergenic 30.0%
!!! TTGATCCTGTCTTTTTTGTT+AGG + Chr1:65101899-65101918 None:intergenic 30.0%
AAAAGTTGCGTTAAGGAAAG+TGG - Chr1:65102076-65102095 MsG0180003605.01.T01:intron 35.0%
AACACAATATTCATGGACCT+AGG + Chr1:65102239-65102258 None:intergenic 35.0%
AATGGTTACAACTCAGTCAA+TGG + Chr1:65101996-65102015 None:intergenic 35.0%
ACAAGTGATGAAACTCTCAA+TGG + Chr1:65102014-65102033 None:intergenic 35.0%
ACCTACATGAAAAGGAACTA+GGG - Chr1:65101488-65101507 MsG0180003605.01.T01:three_prime_UTR 35.0%
ACTTAGGATCGTTTATATGG+TGG + Chr1:65100703-65100722 None:intergenic 35.0%
AGAATGAGGGAGTTTGAATT+AGG - Chr1:65101745-65101764 MsG0180003605.01.T01:three_prime_UTR 35.0%
AGAGAAAGCTTGGGTAAAAT+GGG - Chr1:65101169-65101188 MsG0180003605.01.T01:three_prime_UTR 35.0%
AGTCAAAACAGAGAAAGCTT+GGG - Chr1:65101160-65101179 MsG0180003605.01.T01:three_prime_UTR 35.0%
ATAACACGCTTTCTCATGTT+TGG + Chr1:65102102-65102121 None:intergenic 35.0%
CAGATTCTTCTTCGAAGTAA+AGG + Chr1:65102593-65102612 None:intergenic 35.0%
GAGATTAAAGTCTAGTGTGT+TGG - Chr1:65101679-65101698 MsG0180003605.01.T01:three_prime_UTR 35.0%
GTTAAATGCAGAGAGAATGA+GGG - Chr1:65101732-65101751 MsG0180003605.01.T01:three_prime_UTR 35.0%
GTTTCATCACTTGTGAGATT+AGG - Chr1:65102020-65102039 MsG0180003605.01.T01:CDS 35.0%
TACCTACATGAAAAGGAACT+AGG - Chr1:65101487-65101506 MsG0180003605.01.T01:three_prime_UTR 35.0%
TACTCTATGTAGAAGGTCAA+CGG + Chr1:65102186-65102205 None:intergenic 35.0%
TAGTCAAAACAGAGAAAGCT+TGG - Chr1:65101159-65101178 MsG0180003605.01.T01:three_prime_UTR 35.0%
TGATATTTATGATGAGGAGG+AGG + Chr1:65101119-65101138 None:intergenic 35.0%
TGTAGGTAATTTAGTGTTCG+AGG + Chr1:65101475-65101494 None:intergenic 35.0%
! ATCTCTTTTGCTAGACTTCA+TGG - Chr1:65101356-65101375 MsG0180003605.01.T01:three_prime_UTR 35.0%
!! ATTATTAGATGTAGTGGGTG+GGG + Chr1:65100672-65100691 None:intergenic 35.0%
ACAACAATGTCATGTCTCCT+AGG - Chr1:65102219-65102238 MsG0180003605.01.T01:intron 40.0%
AGATGCAATATTGCCTTCAG+AGG - Chr1:65101049-65101068 MsG0180003605.01.T01:three_prime_UTR 40.0%
ATAAGTTGCCAGATACTGGT+GGG + Chr1:65100499-65100518 None:intergenic 40.0%
CAGAGAAAGCTTGGGTAAAA+TGG - Chr1:65101168-65101187 MsG0180003605.01.T01:three_prime_UTR 40.0%
GCATACCAAATATGGAGCAT+AGG - Chr1:65100776-65100795 MsG0180003605.01.T01:three_prime_UTR 40.0%
GGCAACTTATAATTGCTGTG+TGG - Chr1:65100509-65100528 MsG0180003605.01.T01:three_prime_UTR 40.0%
GGTTAAATGCAGAGAGAATG+AGG - Chr1:65101731-65101750 MsG0180003605.01.T01:three_prime_UTR 40.0%
GTAGACCTATGCTCCATATT+TGG + Chr1:65100784-65100803 None:intergenic 40.0%
TAAGAAAGTCCATGGATGAG+AGG - Chr1:65102427-65102446 MsG0180003605.01.T01:five_prime_UTR 40.0%
TATAAGTTGCCAGATACTGG+TGG + Chr1:65100500-65100519 None:intergenic 40.0%
TGCACAATATTCGTCACAAG+TGG + Chr1:65101835-65101854 None:intergenic 40.0%
TGTTCAATCTAAACCGTGAG+AGG + Chr1:65101306-65101325 None:intergenic 40.0%
! AACAAACCTCTAGAGATGTG+AGG + Chr1:65100846-65100865 None:intergenic 40.0%
! GAGAAAGAAGCATGTTGTGA+AGG + Chr1:65100806-65100825 None:intergenic 40.0%
! GCGGATTGAATCTAGTTGAA+GGG - Chr1:65101800-65101819 MsG0180003605.01.T01:three_prime_UTR 40.0%
! TCCCTAGTTCCTTTTCATGT+AGG + Chr1:65101492-65101511 None:intergenic 40.0%
! TGCGGATTGAATCTAGTTGA+AGG - Chr1:65101799-65101818 MsG0180003605.01.T01:three_prime_UTR 40.0%
!! GTGCTACTTTGGCACAAATA+AGG - Chr1:65101200-65101219 MsG0180003605.01.T01:three_prime_UTR 40.0%
!!! TTTTGACTTTCTAGCACGAG+AGG - Chr1:65102160-65102179 MsG0180003605.01.T01:intron 40.0%
CTAGAGATGTGAGGAGAACA+AGG + Chr1:65100837-65100856 None:intergenic 45.0%
CTGCAGGTTAAGAAAGTCCA+TGG - Chr1:65102419-65102438 MsG0180003605.01.T01:five_prime_UTR 45.0%
TAAGTTGCCAGATACTGGTG+GGG + Chr1:65100498-65100517 None:intergenic 45.0%
TAGAAGCTTCCTCTCATCCA+TGG + Chr1:65102439-65102458 None:intergenic 45.0%
TGGACTTTCTTAACCTGCAG+TGG + Chr1:65102419-65102438 None:intergenic 45.0%
TGTTCTCCTCACATCTCTAG+AGG - Chr1:65100837-65100856 MsG0180003605.01.T01:three_prime_UTR 45.0%
! CTAGGCGGTAATTTTGTTCG+AGG - Chr1:65101415-65101434 MsG0180003605.01.T01:three_prime_UTR 45.0%
!! GGGTGTTAGTAGTGCTACTT+TGG - Chr1:65101189-65101208 MsG0180003605.01.T01:three_prime_UTR 45.0%
!! ATATAGATAAAAATTTAATT+GGG - Chr1:65101959-65101978 MsG0180003605.01.T01:CDS 5.0%
!! TATATAGATAAAAATTTAAT+TGG - Chr1:65101958-65101977 MsG0180003605.01.T01:CDS 5.0%
GAACCGATGAGTGTGTCTCA+GGG + Chr1:65101097-65101116 None:intergenic 50.0%
TCAGGCAAGAACCACAGCTA+AGG + Chr1:65100625-65100644 None:intergenic 50.0%
TTGTTCGAGGCATGAGTGCA+TGG - Chr1:65101428-65101447 MsG0180003605.01.T01:three_prime_UTR 50.0%
AACGAACCCCCCACACACAT+AGG - Chr1:65100644-65100663 MsG0180003605.01.T01:three_prime_UTR 55.0%
AGACAACAAGCTGCGCTGCT+AGG + Chr1:65102291-65102310 None:intergenic 55.0%
AGGCCCTGAGACACACTCAT+CGG - Chr1:65101091-65101110 MsG0180003605.01.T01:three_prime_UTR 55.0%
ATCCACACCCCACCAGTATC+TGG - Chr1:65100488-65100507 MsG0180003605.01.T01:three_prime_UTR 55.0%
GAATGAGCCAGCCTTAGCTG+TGG - Chr1:65100611-65100630 MsG0180003605.01.T01:three_prime_UTR 55.0%
GCAAGAACCACAGCTAAGGC+TGG + Chr1:65100621-65100640 None:intergenic 55.0%
GGAACCGATGAGTGTGTCTC+AGG + Chr1:65101098-65101117 None:intergenic 55.0%
GGTGGGGATCCTATGTGTGT+GGG + Chr1:65100656-65100675 None:intergenic 55.0%
GTGGGGATCCTATGTGTGTG+GGG + Chr1:65100655-65100674 None:intergenic 55.0%
TGGGGATCCTATGTGTGTGG+GGG + Chr1:65100654-65100673 None:intergenic 55.0%
! CGCTGCTAGGCCTTTTTGGA+TGG + Chr1:65102278-65102297 None:intergenic 55.0%
GGGGATCCTATGTGTGTGGG+GGG + Chr1:65100653-65100672 None:intergenic 60.0%
GGGTGGGGATCCTATGTGTG+TGG + Chr1:65100657-65100676 None:intergenic 60.0%
TGCCAGATACTGGTGGGGTG+TGG + Chr1:65100493-65100512 None:intergenic 60.0%
TGTGTGTGGGGGGTTCGTTC+AGG + Chr1:65100643-65100662 None:intergenic 60.0%
! GCTGCGCTGCTAGGCCTTTT+TGG + Chr1:65102282-65102301 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 65100488 65102645 65100488 ID=MsG0180003605.01;Name=MsG0180003605.01
Chr1 mRNA 65100488 65102645 65100488 ID=MsG0180003605.01.T01;Parent=MsG0180003605.01;Name=MsG0180003605.01.T01;_AED=0.05;_eAED=0.05;_QI=299|0|0.5|1|0|0|2|1425|83
Chr1 exon 65100488 65102091 65100488 ID=MsG0180003605.01.T01:exon:4858;Parent=MsG0180003605.01.T01
Chr1 exon 65102274 65102645 65102274 ID=MsG0180003605.01.T01:exon:4857;Parent=MsG0180003605.01.T01
Chr1 five_prime_UTR 65102347 65102645 65102347 ID=MsG0180003605.01.T01:five_prime_utr;Parent=MsG0180003605.01.T01
Chr1 CDS 65102274 65102346 65102274 ID=MsG0180003605.01.T01:cds;Parent=MsG0180003605.01.T01
Chr1 CDS 65101913 65102091 65101913 ID=MsG0180003605.01.T01:cds;Parent=MsG0180003605.01.T01
Chr1 three_prime_UTR 65100488 65101912 65100488 ID=MsG0180003605.01.T01:three_prime_utr;Parent=MsG0180003605.01.T01
Gene Sequence

>MsG0180003605.01.T01

ATGGAGCATAGGTCTACCTTCACAACATGCTTCTTTCTCTTTCTCTTCCTTGTTCTCCTCACATCTCTAGAGGGAGAATCAGATGCAATATTGCCTTCAGAGGTATATGAAATTGATTATAAAGGCCCTGAGACACACTCATCGGTTCCTCCTCCTCATCATAAATATCATTCAATTCCAAGGAAAAACTTAGTCAAAACAGAGAAAGCTTGGGTAAAATGGGTGTTAGTAGTGCTACTTTGGCACAAATAA

Protein sequence

>MsG0180003605.01.T01

MEHRSTFTTCFFLFLFLVLLTSLEGESDAILPSEVYEIDYKGPETHSSVPPPHHKYHSIPRKNLVKTEKAWVKWVLVVLLWHK*