AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024493.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024493.01.T01 MTR_5g012110 89.655 290 2 2 2 291 1 262 0.0 514
MsG0580024493.01.T01 MTR_5g012110 91.250 240 0 1 52 291 14 232 1.42e-156 436
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024493.01.T01 AT1G12250 75.330 227 35 1 65 291 1 206 6.79e-122 347
MsG0580024493.01.T01 AT1G12250 73.750 240 41 2 52 291 63 280 9.03e-118 340
MsG0580024493.01.T01 AT1G12250 74.699 166 21 1 126 291 1 145 4.45e-85 251

Find 89 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATTACAATTGCCTAAA+AGG 0.171877 5:+5542578 None:intergenic
TGACTTCACTAAATAGTTTC+TGG 0.211662 5:+5542748 None:intergenic
AAAGCTCGAACAATAAAATT+TGG 0.221419 5:+5543261 None:intergenic
TAGAATCATGCTTCTTGTTT+TGG 0.226864 5:-5542684 MsG0580024493.01.T01:three_prime_UTR
CTTGTGCTTACTCCTGTTAC+AGG 0.233017 5:+5543084 None:intergenic
CTGCACTTTAATGTTGAAAT+TGG 0.250096 5:-5544818 MsG0580024493.01.T01:five_prime_UTR
ATTGGATCAGCTGCTCAATT+TGG 0.252631 5:-5544311 MsG0580024493.01.T01:CDS
TGTTCGAGCTTTCACATTAT+AGG 0.259156 5:-5543250 MsG0580024493.01.T01:CDS
TAGGCAATTGTAATTCTATA+AGG 0.272604 5:-5542573 MsG0580024493.01.T01:three_prime_UTR
CATATCAGCAGATGTGAAAT+TGG 0.284272 5:+5543781 None:intergenic
CATATTCTTGTACATATATC+AGG 0.285862 5:-5542894 MsG0580024493.01.T01:three_prime_UTR
TGCATGTGAATGAAAATTTC+AGG 0.287923 5:-5544180 MsG0580024493.01.T01:intron
GCTGAAGTGAGGGGTGAATT+TGG 0.317964 5:-5544335 MsG0580024493.01.T01:CDS
ATACCCAACACAGAACAAAT+AGG 0.326723 5:+5542789 None:intergenic
GTTCGAGCTTTCACATTATA+GGG 0.332378 5:-5543249 MsG0580024493.01.T01:intron
TACCCTATTTGTTCTGTGTT+GGG 0.344695 5:-5542792 MsG0580024493.01.T01:three_prime_UTR
ATTAAGTGCCATCATGTATA+AGG 0.345082 5:+5544719 None:intergenic
AACTTCTCCTTGCAGCAGTT+TGG 0.360649 5:-5544934 MsG0580024493.01.T01:five_prime_UTR
ATGTAGAGTCCAACAAGAAC+TGG 0.378810 5:-5544445 MsG0580024493.01.T01:intron
AAGAATGGCATTCGTGAGAT+TGG 0.392860 5:+5543406 None:intergenic
AACAAACGACGAAATGCTTA+TGG 0.399210 5:-5543042 MsG0580024493.01.T01:CDS
TACTTTCAATGGTGCATACA+TGG 0.411365 5:-5543735 MsG0580024493.01.T01:CDS
AAGCGTCGGGAAGATCTATA+TGG 0.420957 5:+5542494 None:intergenic
CTGATATATGTACAAGAATA+TGG 0.421229 5:+5542895 None:intergenic
AGTGGCACAAATCCTGTAAC+AGG 0.423388 5:-5543096 MsG0580024493.01.T01:CDS
GTAAGCACAAGAGTGAGTTT+AGG 0.427943 5:-5543072 MsG0580024493.01.T01:CDS
TTAAAATGTGTGAGCTTTCA+CGG 0.428150 5:-5544965 MsG0580024493.01.T01:five_prime_UTR
TTTAGCGGTTCTACTTTCAA+TGG 0.429969 5:-5543746 MsG0580024493.01.T01:CDS
CTACCCTATTTGTTCTGTGT+TGG 0.433045 5:-5542793 MsG0580024493.01.T01:three_prime_UTR
ATGCATTGTGTTTGAAACCT+TGG 0.441509 5:+5544641 None:intergenic
TTTGAAACCTTGGAACTTGA+TGG 0.446789 5:+5544651 None:intergenic
CTTGGAGGCGCCATCATTGA+AGG 0.448018 5:-5543356 MsG0580024493.01.T01:CDS
TACCCAACACAGAACAAATA+GGG 0.452694 5:+5542790 None:intergenic
GTGAGGGGTGAATTTGGTAT+TGG 0.473683 5:-5544329 MsG0580024493.01.T01:CDS
TGCGACTCGAAATAGTTACT+TGG 0.477895 5:-5542937 MsG0580024493.01.T01:exon
ATCCACACACAGATTCAAAC+AGG 0.480012 5:+5542604 None:intergenic
GGTTTCTGCGATGAAGCATC+AGG 0.489768 5:-5542964 MsG0580024493.01.T01:CDS
AAAATCAGCGCCTTCAATGA+TGG 0.489950 5:+5543346 None:intergenic
ATGAGGAAGTAGATCTTACA+TGG 0.501856 5:+5542717 None:intergenic
CACTCAACAATGGAGAGGAT+GGG 0.509929 5:+5543016 None:intergenic
TGATTTGAGTGATACATTGA+TGG 0.510666 5:-5543576 MsG0580024493.01.T01:CDS
GTCCTCACACGGAGTGACCT+TGG 0.512623 5:-5543374 MsG0580024493.01.T01:CDS
GCACTCAACAATGGAGAGGA+TGG 0.517401 5:+5543015 None:intergenic
TTCTTACCCATCAAGTTCCA+AGG 0.522939 5:-5544658 MsG0580024493.01.T01:CDS
CTTCAATGATGGCGCCTCCA+AGG 0.525449 5:+5543357 None:intergenic
CAATTTCAACATTAAAGTGC+AGG 0.526052 5:+5544819 None:intergenic
TAAAATGTGTGAGCTTTCAC+GGG 0.533256 5:-5544964 MsG0580024493.01.T01:five_prime_UTR
GAGGACTGTTCTAGAAAGAA+TGG 0.538116 5:+5543391 None:intergenic
CAAGTTTGAAGCTGAAGTGA+GGG 0.545715 5:-5544345 MsG0580024493.01.T01:CDS
TGTAGAGTCCAACAAGAACT+GGG 0.551946 5:-5544444 MsG0580024493.01.T01:intron
AATATCTTCCTTATACATGA+TGG 0.554896 5:-5544727 MsG0580024493.01.T01:exon
CTCCAAGGTCACTCCGTGTG+AGG 0.564434 5:+5543372 None:intergenic
TAAAGTGCAGGAAGTGATTG+TGG 0.569334 5:+5544831 None:intergenic
TGGTGAGAATTGATTGAAAG+TGG 0.571719 5:+5544687 None:intergenic
TTCCTGTTTGAATCTGTGTG+TGG 0.573278 5:-5542606 MsG0580024493.01.T01:three_prime_UTR
GATTCTATATGCAGAAAATG+AGG 0.575957 5:+5542700 None:intergenic
TGTACAAGAATATGGTCTGA+TGG 0.577578 5:+5542903 None:intergenic
TTAAACAATAATCATCCTCA+AGG 0.584852 5:-5544579 MsG0580024493.01.T01:intron
TGATATTCTAATGAGCAATG+AGG 0.585986 5:+5544767 None:intergenic
TATATCAGGGACAACAATTG+AGG 0.586029 5:-5542880 MsG0580024493.01.T01:three_prime_UTR
ACTCAACAATGGAGAGGATG+GGG 0.589268 5:+5543017 None:intergenic
ACAAGTTTGAAGCTGAAGTG+AGG 0.602950 5:-5544346 MsG0580024493.01.T01:CDS
AAACTTGTTAAGATCAGCAA+GGG 0.603842 5:+5544361 None:intergenic
CTCACACGGAGTGACCTTGG+AGG 0.604487 5:-5543371 MsG0580024493.01.T01:CDS
GTAACTATTTCGAGTCGCAA+AGG 0.605296 5:+5542941 None:intergenic
CTTCATCGCAGAAACCATCT+CGG 0.606756 5:+5542971 None:intergenic
TTGAAACCTTGGAACTTGAT+GGG 0.610134 5:+5544652 None:intergenic
ACAAGAGTGAGTTTAGGTTG+CGG 0.613646 5:-5543066 MsG0580024493.01.T01:CDS
TTTCTAGAACAGTCCTCACA+CGG 0.614987 5:-5543385 MsG0580024493.01.T01:CDS
CAAAATTCCAAACTGCTGCA+AGG 0.615780 5:+5544927 None:intergenic
ATTCTAATGAGCAATGAGGA+AGG 0.615808 5:+5544771 None:intergenic
TGTGGTGGAGCACTCAACAA+TGG 0.624406 5:+5543006 None:intergenic
CGGTCTAGTAGTTTCTGTGG+TGG 0.624970 5:+5542991 None:intergenic
ATATTCTTGTACATATATCA+GGG 0.625549 5:-5542893 MsG0580024493.01.T01:three_prime_UTR
GCTTTATGCAAGTACGCTAG+TGG 0.631872 5:-5543114 MsG0580024493.01.T01:CDS
TGATACATTGATGGATCGCA+TGG 0.638959 5:-5543567 MsG0580024493.01.T01:intron
TTGATGGGTAAGAAGAAACA+TGG 0.640651 5:+5544667 None:intergenic
CAAACTTGTTAAGATCAGCA+AGG 0.646856 5:+5544360 None:intergenic
GAAACTTGTTTCAGCCACGT+TGG 0.648131 5:-5544420 MsG0580024493.01.T01:CDS
TTAGCGATCGATGCAATCAG+TGG 0.648986 5:+5543284 None:intergenic
TAGAGTCCAACAAGAACTGG+GGG 0.661646 5:-5544442 MsG0580024493.01.T01:CDS
TCTCGGTCTAGTAGTTTCTG+TGG 0.670722 5:+5542988 None:intergenic
CAGAAACTACTAGACCGAGA+TGG 0.678877 5:-5542985 MsG0580024493.01.T01:CDS
AAGTTTGAAGCTGAAGTGAG+GGG 0.680605 5:-5544344 MsG0580024493.01.T01:CDS
GTAGAGTCCAACAAGAACTG+GGG 0.685567 5:-5544443 MsG0580024493.01.T01:intron
TGGAGCACTCAACAATGGAG+AGG 0.687911 5:+5543011 None:intergenic
AAGTACAAAAGTTTGACATG+TGG 0.694038 5:-5544900 MsG0580024493.01.T01:five_prime_UTR
TGAGGAAGTAGATCTTACAT+GGG 0.697423 5:+5542718 None:intergenic
AATAACAGCAGCTGCCAACG+TGG 0.709124 5:+5544406 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATTTTTTTTAATTTTGAT+TGG - Chr5:5542955-5542974 MsG0580024493.01.T01:CDS 10.0%
!! ACATATATTATATATAGAAG+TGG + Chr5:5543582-5543601 None:intergenic 15.0%
!! TAGCTTCTTAAAAAAAAAAA+CGG - Chr5:5543494-5543513 MsG0580024493.01.T01:intron 15.0%
!! TATTATTTGACTAATTATGT+AGG - Chr5:5544347-5544366 MsG0580024493.01.T01:CDS 15.0%
!!! CTGAAATTATAATACTTTTT+AGG + Chr5:5543833-5543852 None:intergenic 15.0%
!!! TGTTATTTAAATTCTTTCTT+AGG - Chr5:5543347-5543366 MsG0580024493.01.T01:CDS 15.0%
!! ATATTCTTGTACATATATCA+GGG - Chr5:5544590-5544609 MsG0580024493.01.T01:CDS 20.0%
!! ATGATAATTACTAATGCATT+AGG - Chr5:5543257-5543276 MsG0580024493.01.T01:CDS 20.0%
!! GAAAGAATTTAAATAACACA+AGG + Chr5:5543345-5543364 None:intergenic 20.0%
!! TGATAATTACTAATGCATTA+GGG - Chr5:5543258-5543277 MsG0580024493.01.T01:CDS 20.0%
!! TTAATTAGTATGTGCTTAAT+TGG + Chr5:5543387-5543406 None:intergenic 20.0%
!! TTAGATTATGTCATGAATAT+AGG + Chr5:5543664-5543683 None:intergenic 20.0%
!! TTATTATGTACAGAAGTTTA+GGG - Chr5:5543637-5543656 MsG0580024493.01.T01:intron 20.0%
!!! TCTCTGATTTTATTTATATC+CGG - Chr5:5544011-5544030 MsG0580024493.01.T01:intron 20.0%
! AAAGCTCGAACAATAAAATT+TGG + Chr5:5544225-5544244 None:intergenic 25.0%
! AATATCTTCCTTATACATGA+TGG - Chr5:5542756-5542775 MsG0580024493.01.T01:three_prime_UTR 25.0%
! CATATTCTTGTACATATATC+AGG - Chr5:5544589-5544608 MsG0580024493.01.T01:CDS 25.0%
! CTGATATATGTACAAGAATA+TGG + Chr5:5544591-5544610 None:intergenic 25.0%
! GTTATTATGTACAGAAGTTT+AGG - Chr5:5543636-5543655 MsG0580024493.01.T01:intron 25.0%
! TAGAATTACAATTGCCTAAA+AGG + Chr5:5544908-5544927 None:intergenic 25.0%
! TAGGCAATTGTAATTCTATA+AGG - Chr5:5544910-5544929 MsG0580024493.01.T01:five_prime_UTR 25.0%
! TTAAACAATAATCATCCTCA+AGG - Chr5:5542904-5542923 MsG0580024493.01.T01:three_prime_UTR 25.0%
! TTACAGGTATAAGTTAATAG+TGG - Chr5:5543798-5543817 MsG0580024493.01.T01:intron 25.0%
!! TTCTAGTGTTATCCAATTTT+TGG + Chr5:5542614-5542633 None:intergenic 25.0%
AAATGAAAGAAACCAACTTG+AGG + Chr5:5543207-5543226 None:intergenic 30.0%
AAGTACAAAAGTTTGACATG+TGG - Chr5:5542583-5542602 MsG0580024493.01.T01:three_prime_UTR 30.0%
ATTAAGTGCCATCATGTATA+AGG + Chr5:5542767-5542786 None:intergenic 30.0%
CAATTTCAACATTAAAGTGC+AGG + Chr5:5542667-5542686 None:intergenic 30.0%
CTGCACTTTAATGTTGAAAT+TGG - Chr5:5542665-5542684 MsG0580024493.01.T01:three_prime_UTR 30.0%
GATTCTATATGCAGAAAATG+AGG + Chr5:5544786-5544805 None:intergenic 30.0%
GCATATAATGTATGTCAATG+TGG - Chr5:5544270-5544289 MsG0580024493.01.T01:intron 30.0%
TGACTTCACTAAATAGTTTC+TGG + Chr5:5544738-5544757 None:intergenic 30.0%
TGATATTCTAATGAGCAATG+AGG + Chr5:5542719-5542738 None:intergenic 30.0%
TGATTTGAGTGATACATTGA+TGG - Chr5:5543907-5543926 MsG0580024493.01.T01:intron 30.0%
TGCATGTGAATGAAAATTTC+AGG - Chr5:5543303-5543322 MsG0580024493.01.T01:CDS 30.0%
TTAAAATGTGTGAGCTTTCA+CGG - Chr5:5542518-5542537 MsG0580024493.01.T01:three_prime_UTR 30.0%
TTATATCCGGTTTCATGTTT+GGG - Chr5:5544024-5544043 MsG0580024493.01.T01:intron 30.0%
TTGTAATGCAATGATGACTT+AGG - Chr5:5542997-5543016 MsG0580024493.01.T01:CDS 30.0%
TTTATATCCGGTTTCATGTT+TGG - Chr5:5544023-5544042 MsG0580024493.01.T01:intron 30.0%
! ATGAGAGAATCAGATTTTAG+CGG - Chr5:5543722-5543741 MsG0580024493.01.T01:CDS 30.0%
! GCATTCAAAGCAAATTTTAC+AGG - Chr5:5543782-5543801 MsG0580024493.01.T01:CDS 30.0%
! TTTCAGGTAATCTTTCAATC+AGG - Chr5:5543319-5543338 MsG0580024493.01.T01:CDS 30.0%
!! AAACTTGTTAAGATCAGCAA+GGG + Chr5:5543125-5543144 None:intergenic 30.0%
!! TAGAATCATGCTTCTTGTTT+TGG - Chr5:5544799-5544818 MsG0580024493.01.T01:five_prime_UTR 30.0%
AACAAACGACGAAATGCTTA+TGG - Chr5:5544441-5544460 MsG0580024493.01.T01:CDS 35.0%
ATACCCAACACAGAACAAAT+AGG + Chr5:5544697-5544716 None:intergenic 35.0%
ATGAGGAAGTAGATCTTACA+TGG + Chr5:5544769-5544788 None:intergenic 35.0%
ATTCTAATGAGCAATGAGGA+AGG + Chr5:5542715-5542734 None:intergenic 35.0%
CATATCAGCAGATGTGAAAT+TGG + Chr5:5543705-5543724 None:intergenic 35.0%
CATTAGGGTTACTATAATGC+AGG - Chr5:5543273-5543292 MsG0580024493.01.T01:CDS 35.0%
GTATAGTACTACTAACCTTG+AGG + Chr5:5542922-5542941 None:intergenic 35.0%
GTTCGAGCTTTCACATTATA+GGG - Chr5:5544234-5544253 MsG0580024493.01.T01:intron 35.0%
TAAAATGTGTGAGCTTTCAC+GGG - Chr5:5542519-5542538 MsG0580024493.01.T01:three_prime_UTR 35.0%
TACCCAACACAGAACAAATA+GGG + Chr5:5544696-5544715 None:intergenic 35.0%
TACCCTATTTGTTCTGTGTT+GGG - Chr5:5544691-5544710 MsG0580024493.01.T01:CDS 35.0%
TACTTTCAATGGTGCATACA+TGG - Chr5:5543748-5543767 MsG0580024493.01.T01:CDS 35.0%
TATATCAGGGACAACAATTG+AGG - Chr5:5544603-5544622 MsG0580024493.01.T01:CDS 35.0%
TGAGGAAGTAGATCTTACAT+GGG + Chr5:5544768-5544787 None:intergenic 35.0%
TGGTGAGAATTGATTGAAAG+TGG + Chr5:5542799-5542818 None:intergenic 35.0%
TGTACAAGAATATGGTCTGA+TGG + Chr5:5544583-5544602 None:intergenic 35.0%
TGTTCGAGCTTTCACATTAT+AGG - Chr5:5544233-5544252 MsG0580024493.01.T01:intron 35.0%
TTGAAACCTTGGAACTTGAT+GGG + Chr5:5542834-5542853 None:intergenic 35.0%
TTGGGATGTACTATGTATAC+AGG - Chr5:5544042-5544061 MsG0580024493.01.T01:intron 35.0%
TTTAGCGGTTCTACTTTCAA+TGG - Chr5:5543737-5543756 MsG0580024493.01.T01:CDS 35.0%
! ATGCATTGTGTTTGAAACCT+TGG + Chr5:5542845-5542864 None:intergenic 35.0%
! GAAATTGGCTCTTCTGTATA+AGG + Chr5:5543690-5543709 None:intergenic 35.0%
! TTGAGGCTATGTGTGATTTT+TGG - Chr5:5544620-5544639 MsG0580024493.01.T01:CDS 35.0%
! TTGATGGGTAAGAAGAAACA+TGG + Chr5:5542819-5542838 None:intergenic 35.0%
! TTTGAAACCTTGGAACTTGA+TGG + Chr5:5542835-5542854 None:intergenic 35.0%
!! AAGCTCACACATTTTAATCG+TGG + Chr5:5542515-5542534 None:intergenic 35.0%
!! CAAACTTGTTAAGATCAGCA+AGG + Chr5:5543126-5543145 None:intergenic 35.0%
!! TGATTTTAGTGATGCTGTGT+TGG - Chr5:5544153-5544172 MsG0580024493.01.T01:intron 35.0%
!!! TTTTTTGCGCGACATGTTTT+AGG - Chr5:5543881-5543900 MsG0580024493.01.T01:intron 35.0%
AAAATCAGCGCCTTCAATGA+TGG + Chr5:5544140-5544159 None:intergenic 40.0%
AAGAATGGCATTCGTGAGAT+TGG + Chr5:5544080-5544099 None:intergenic 40.0%
ACTTATCGAGCTTATGACTG+AGG - Chr5:5544316-5544335 MsG0580024493.01.T01:CDS 40.0%
AGTCGCTAATTTAACCCACT+TGG - Chr5:5543407-5543426 MsG0580024493.01.T01:CDS 40.0%
ATCCACACACAGATTCAAAC+AGG + Chr5:5544882-5544901 None:intergenic 40.0%
ATGTAGAGTCCAACAAGAAC+TGG - Chr5:5543038-5543057 MsG0580024493.01.T01:CDS 40.0%
ATTGGATCAGCTGCTCAATT+TGG - Chr5:5543172-5543191 MsG0580024493.01.T01:intron 40.0%
CAAAATTCCAAACTGCTGCA+AGG + Chr5:5542559-5542578 None:intergenic 40.0%
CATGTGGCGTTACCAAAAAT+TGG - Chr5:5542599-5542618 MsG0580024493.01.T01:three_prime_UTR 40.0%
CTAATTTAACCCACTTGGGT+TGG - Chr5:5543412-5543431 MsG0580024493.01.T01:CDS 40.0%
CTACCCTATTTGTTCTGTGT+TGG - Chr5:5544690-5544709 MsG0580024493.01.T01:CDS 40.0%
GCTTTCACATTATAGGGTCA+TGG - Chr5:5544240-5544259 MsG0580024493.01.T01:intron 40.0%
GTAAGCACAAGAGTGAGTTT+AGG - Chr5:5544411-5544430 MsG0580024493.01.T01:CDS 40.0%
GTACATCCCAAACATGAAAC+CGG + Chr5:5544033-5544052 None:intergenic 40.0%
GTCGCTAATTTAACCCACTT+GGG - Chr5:5543408-5543427 MsG0580024493.01.T01:CDS 40.0%
TAAAGTGCAGGAAGTGATTG+TGG + Chr5:5542655-5542674 None:intergenic 40.0%
TAATCGTGGAGTAGTGAAGT+GGG + Chr5:5542501-5542520 None:intergenic 40.0%
TGCGACTCGAAATAGTTACT+TGG - Chr5:5544546-5544565 MsG0580024493.01.T01:intron 40.0%
TGTAGAGTCCAACAAGAACT+GGG - Chr5:5543039-5543058 MsG0580024493.01.T01:CDS 40.0%
TTAATCGTGGAGTAGTGAAG+TGG + Chr5:5542502-5542521 None:intergenic 40.0%
TTCCTGTTTGAATCTGTGTG+TGG - Chr5:5544877-5544896 MsG0580024493.01.T01:five_prime_UTR 40.0%
TTCTTACCCATCAAGTTCCA+AGG - Chr5:5542825-5542844 MsG0580024493.01.T01:three_prime_UTR 40.0%
TTGGACTCTACATTAGCACA+TGG + Chr5:5543031-5543050 None:intergenic 40.0%
! AAGTTTGAAGCTGAAGTGAG+GGG - Chr5:5543139-5543158 MsG0580024493.01.T01:intron 40.0%
! ACAAGTTTGAAGCTGAAGTG+AGG - Chr5:5543137-5543156 MsG0580024493.01.T01:intron 40.0%
! CAAGTTTGAAGCTGAAGTGA+GGG - Chr5:5543138-5543157 MsG0580024493.01.T01:intron 40.0%
! GTAACTATTTCGAGTCGCAA+AGG + Chr5:5544545-5544564 None:intergenic 40.0%
! TGATACATTGATGGATCGCA+TGG - Chr5:5543916-5543935 MsG0580024493.01.T01:intron 40.0%
! TGTGTGTGGATCTTCCTTTT+AGG - Chr5:5544891-5544910 MsG0580024493.01.T01:five_prime_UTR 40.0%
!! ACAAGAGTGAGTTTAGGTTG+CGG - Chr5:5544417-5544436 MsG0580024493.01.T01:CDS 40.0%
!! ATGTGGTCAAAGCGTTTTCT+TGG - Chr5:5544287-5544306 MsG0580024493.01.T01:intron 40.0%
!! GAGGACTGTTCTAGAAAGAA+TGG + Chr5:5544095-5544114 None:intergenic 40.0%
!! TTTCTAGAACAGTCCTCACA+CGG - Chr5:5544098-5544117 MsG0580024493.01.T01:intron 40.0%
AACTTCTCCTTGCAGCAGTT+TGG - Chr5:5542549-5542568 MsG0580024493.01.T01:three_prime_UTR 45.0%
AAGTTTCCCCCAGTTCTTGT+TGG + Chr5:5543050-5543069 None:intergenic 45.0%
ACTCAACAATGGAGAGGATG+GGG + Chr5:5544469-5544488 None:intergenic 45.0%
AGTGGCACAAATCCTGTAAC+AGG - Chr5:5544387-5544406 MsG0580024493.01.T01:CDS 45.0%
CACTCAACAATGGAGAGGAT+GGG + Chr5:5544470-5544489 None:intergenic 45.0%
CAGAAACTACTAGACCGAGA+TGG - Chr5:5544498-5544517 MsG0580024493.01.T01:intron 45.0%
CTTCATCGCAGAAACCATCT+CGG + Chr5:5544515-5544534 None:intergenic 45.0%
CTTGTGCTTACTCCTGTTAC+AGG + Chr5:5544402-5544421 None:intergenic 45.0%
GCTTTATGCAAGTACGCTAG+TGG - Chr5:5544369-5544388 MsG0580024493.01.T01:CDS 45.0%
GTAGAGTCCAACAAGAACTG+GGG - Chr5:5543040-5543059 MsG0580024493.01.T01:CDS 45.0%
GTGAGGGGTGAATTTGGTAT+TGG - Chr5:5543154-5543173 MsG0580024493.01.T01:intron 45.0%
TAGAGTCCAACAAGAACTGG+GGG - Chr5:5543041-5543060 MsG0580024493.01.T01:CDS 45.0%
TCTCGGTCTAGTAGTTTCTG+TGG + Chr5:5544498-5544517 None:intergenic 45.0%
TTAGCGATCGATGCAATCAG+TGG + Chr5:5544202-5544221 None:intergenic 45.0%
! AGTGGTCGTACCAGTTTTTG+GGG + Chr5:5544184-5544203 None:intergenic 45.0%
! CAGTGGTCGTACCAGTTTTT+GGG + Chr5:5544185-5544204 None:intergenic 45.0%
! GAAACTTGTTTCAGCCACGT+TGG - Chr5:5543063-5543082 MsG0580024493.01.T01:CDS 45.0%
! TCAGTGGTCGTACCAGTTTT+TGG + Chr5:5544186-5544205 None:intergenic 45.0%
!! ATATTAATAGTTAATATATT+TGG - Chr5:5543230-5543249 MsG0580024493.01.T01:intron 5.0%
!! TATTAATAGTTAATATATTT+GGG - Chr5:5543231-5543250 MsG0580024493.01.T01:intron 5.0%
AATAACAGCAGCTGCCAACG+TGG + Chr5:5543080-5543099 None:intergenic 50.0%
CGGTCTAGTAGTTTCTGTGG+TGG + Chr5:5544495-5544514 None:intergenic 50.0%
GCACTCAACAATGGAGAGGA+TGG + Chr5:5544471-5544490 None:intergenic 50.0%
GCTGAAGTGAGGGGTGAATT+TGG - Chr5:5543148-5543167 MsG0580024493.01.T01:intron 50.0%
GTTGGACCTTCCCCAAAAAC+TGG - Chr5:5544171-5544190 MsG0580024493.01.T01:intron 50.0%
TAGCCCACACAAAGTAGCAC+CGG + Chr5:5543471-5543490 None:intergenic 50.0%
TGGATCAGCAGACCTCAAGT+TGG - Chr5:5543192-5543211 MsG0580024493.01.T01:intron 50.0%
TGTCTCAGGTTCGATTCTCC+CGG - Chr5:5543449-5543468 MsG0580024493.01.T01:intron 50.0%
! GGTTTCTGCGATGAAGCATC+AGG - Chr5:5544519-5544538 MsG0580024493.01.T01:intron 50.0%
! TGGAGCACTCAACAATGGAG+AGG + Chr5:5544475-5544494 None:intergenic 50.0%
! TGTGGTGGAGCACTCAACAA+TGG + Chr5:5544480-5544499 None:intergenic 50.0%
!! GTCGTACCAGTTTTTGGGGA+AGG + Chr5:5544180-5544199 None:intergenic 50.0%
!! TTAACCCACTTGGGTTGGCT+GGG - Chr5:5543417-5543436 MsG0580024493.01.T01:CDS 50.0%
!! TTTAACCCACTTGGGTTGGC+TGG - Chr5:5543416-5543435 MsG0580024493.01.T01:CDS 50.0%
AAGACCCAGCCAACCCAAGT+GGG + Chr5:5543424-5543443 None:intergenic 55.0%
AGCCCACACAAAGTAGCACC+GGG + Chr5:5543470-5543489 None:intergenic 55.0%
CTGGGTCTTGAGTGTGTCTC+AGG - Chr5:5543435-5543454 MsG0580024493.01.T01:intron 55.0%
! CTTCAATGATGGCGCCTCCA+AGG + Chr5:5544129-5544148 None:intergenic 55.0%
!! CTCCCGGTGCTACTTTGTGT+GGG - Chr5:5543465-5543484 MsG0580024493.01.T01:intron 55.0%
!! CTTGGAGGCGCCATCATTGA+AGG - Chr5:5544127-5544146 MsG0580024493.01.T01:intron 55.0%
!! TCTCCCGGTGCTACTTTGTG+TGG - Chr5:5543464-5543483 MsG0580024493.01.T01:intron 55.0%
CAAGACCCAGCCAACCCAAG+TGG + Chr5:5543425-5543444 None:intergenic 60.0%
CTCACACGGAGTGACCTTGG+AGG - Chr5:5544112-5544131 MsG0580024493.01.T01:intron 60.0%
CTCCAAGGTCACTCCGTGTG+AGG + Chr5:5544114-5544133 None:intergenic 60.0%
GTCCTCACACGGAGTGACCT+TGG - Chr5:5544109-5544128 MsG0580024493.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 5542501 5545004 5542501 ID=MsG0580024493.01;Name=MsG0580024493.01
Chr5 mRNA 5542501 5545004 5542501 ID=MsG0580024493.01.T01;Parent=MsG0580024493.01;Name=MsG0580024493.01.T01;_AED=0.20;_eAED=0.21;_QI=271|0.5|0.57|1|0.5|0.57|7|444|291
Chr5 exon 5542501 5543136 5542501 ID=MsG0580024493.01.T01:exon:19117;Parent=MsG0580024493.01.T01
Chr5 exon 5543250 5543441 5543250 ID=MsG0580024493.01.T01:exon:19116;Parent=MsG0580024493.01.T01
Chr5 exon 5543568 5543602 5543568 ID=MsG0580024493.01.T01:exon:19115;Parent=MsG0580024493.01.T01
Chr5 exon 5543702 5543808 5543702 ID=MsG0580024493.01.T01:exon:19114;Parent=MsG0580024493.01.T01
Chr5 exon 5544181 5544210 5544181 ID=MsG0580024493.01.T01:exon:19113;Parent=MsG0580024493.01.T01
Chr5 exon 5544296 5544461 5544296 ID=MsG0580024493.01.T01:exon:19112;Parent=MsG0580024493.01.T01
Chr5 exon 5544580 5545004 5544580 ID=MsG0580024493.01.T01:exon:19111;Parent=MsG0580024493.01.T01
Chr5 five_prime_UTR 5544734 5545004 5544734 ID=MsG0580024493.01.T01:five_prime_utr;Parent=MsG0580024493.01.T01
Chr5 CDS 5544580 5544733 5544580 ID=MsG0580024493.01.T01:cds;Parent=MsG0580024493.01.T01
Chr5 CDS 5544296 5544461 5544296 ID=MsG0580024493.01.T01:cds;Parent=MsG0580024493.01.T01
Chr5 CDS 5544181 5544210 5544181 ID=MsG0580024493.01.T01:cds;Parent=MsG0580024493.01.T01
Chr5 CDS 5543702 5543808 5543702 ID=MsG0580024493.01.T01:cds;Parent=MsG0580024493.01.T01
Chr5 CDS 5543568 5543602 5543568 ID=MsG0580024493.01.T01:cds;Parent=MsG0580024493.01.T01
Chr5 CDS 5543250 5543441 5543250 ID=MsG0580024493.01.T01:cds;Parent=MsG0580024493.01.T01
Chr5 CDS 5542945 5543136 5542945 ID=MsG0580024493.01.T01:cds;Parent=MsG0580024493.01.T01
Chr5 three_prime_UTR 5542501 5542944 5542501 ID=MsG0580024493.01.T01:three_prime_utr;Parent=MsG0580024493.01.T01
Gene Sequence

>MsG0580024493.01.T01

ATGATGGCACTTAATTCATTCACACCACTTTCAATCAATTCTCACCATGTTTCTTCTTACCCATCAAGTTCCAAGGTTTCAAACACAATGCATTTTCATTCAAAGTCATCTCAAGTCATTTGCAAAATGAGCTTAAACAATAATCATCCTCAAGAGTCCAACAAGAACTGGGGGAAACTTGTTTCAGCCACGTTGGCAGCTGCTGTTATTGTTTTCAGCTCTGACATGTCTGCCCTTGCTGATCTTAACAAGTTTGAAGCTGAAGTGAGGGGTGAATTTGGTATTGGATCAGCTGCTCAATTTGGATCAGCAGACCTCAAGAAAACAGTGCATGTGAATGAAAATTTCAGAAGAGCCAATTTCACATCTGCTGATATGAGAGAATCAGATTTTAGCGGTTCTACTTTCAATGGTGCATACATGGAGAAAGCTGTCGCATTCAAAGCAAATTTTACAGGTGCTGATTTGAGTGATACATTGATGGATCGCATGGTTCTTAATGAAGCCAATCTCACGAATGCCATTCTTTCTAGAACAGTCCTCACACGGAGTGACCTTGGAGGCGCCATCATTGAAGGCGCTGATTTTAGTGATGCTGTGTTGGACCTTCCCCAAAAACTGGTACGACCACTGATTGCATCGATCGCTAACCAAATTTTATTGTTCGAGCTTTCACATTATAGGGCTTTATGCAAGTACGCTAGTGGCACAAATCCTGTAACAGGAGTAAGCACAAGAGTGAGTTTAGGTTGCGGAAACAAACGACGAAATGCTTATGGCACCCCATCCTCTCCATTGTTGAGTGCTCCACCACAGAAACTACTAGACCGAGATGGTTTCTGCGATGAAGCATCAGGCCTTTGCGACTCGAAATAG

Protein sequence

>MsG0580024493.01.T01

MMALNSFTPLSINSHHVSSYPSSSKVSNTMHFHSKSSQVICKMSLNNNHPQESNKNWGKLVSATLAAAVIVFSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKKTVHVNENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNEANLTNAILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLVRPLIASIANQILLFELSHYRALCKYASGTNPVTGVSTRVSLGCGNKRRNAYGTPSSPLLSAPPQKLLDRDGFCDEASGLCDSK*