Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002799.01.T01 | KEH28647.1 | 92.908 | 141 | 10 | 0 | 1 | 141 | 442 | 582 | 2.00E-82 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002799.01.T01 | O22218 | 65.957 | 141 | 47 | 1 | 1 | 141 | 442 | 581 | 7.37E-54 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002799.01.T01 | A0A072UG28 | 92.908 | 141 | 10 | 0 | 1 | 141 | 442 | 582 | 9.56e-83 | 270 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048464.01 | MsG0180002799.01 | 0.805342 | 1.398462e-49 | 7.380219e-47 |
| MsG0180000114.01 | MsG0180002799.01 | 0.806064 | 9.863725e-50 | 5.302999e-47 |
| MsG0180002796.01 | MsG0180002799.01 | 0.857975 | 1.131254e-62 | 2.842950e-59 |
| MsG0180002799.01 | MsG0180003725.01 | 0.831057 | 2.070695e-55 | 2.221833e-52 |
| MsG0180002799.01 | MsG0180003807.01 | 0.814299 | 1.653952e-51 | 1.105655e-48 |
| MsG0180002799.01 | MsG0180003885.01 | 0.801359 | 9.343812e-49 | 4.453498e-46 |
| MsG0180002799.01 | MsG0180004493.01 | 0.816375 | 5.711605e-52 | 4.040271e-49 |
| MsG0180002799.01 | MsG0180005445.01 | 0.802036 | 6.787517e-49 | 3.290953e-46 |
| MsG0180002799.01 | MsG0180005509.01 | 0.809217 | 2.109943e-50 | 1.231577e-47 |
| MsG0180002799.01 | MsG0180006104.01 | 0.832103 | 1.143952e-55 | 1.265942e-52 |
| MsG0180002799.01 | MsG0280006309.01 | 0.805946 | 1.044286e-49 | 5.597520e-47 |
| MsG0180002799.01 | MsG0280006753.01 | -0.802624 | 5.136535e-49 | 2.528050e-46 |
| MsG0180002799.01 | MsG0280007496.01 | 0.810544 | 1.093672e-50 | 6.610802e-48 |
| MsG0180002799.01 | MsG0280007531.01 | 0.828042 | 1.119829e-54 | 1.100375e-51 |
| MsG0180002799.01 | MsG0280008113.01 | 0.803411 | 3.531504e-49 | 1.773411e-46 |
| MsG0180002799.01 | MsG0280008363.01 | 0.817218 | 3.695470e-52 | 2.675074e-49 |
| MsG0180002799.01 | MsG0280008738.01 | 0.823450 | 1.376391e-53 | 1.185462e-50 |
| MsG0180002799.01 | MsG0280008765.01 | 0.836202 | 1.074295e-56 | 1.344550e-53 |
| MsG0180002799.01 | MsG0280008932.01 | 0.827677 | 1.370992e-54 | 1.332749e-51 |
| MsG0180002799.01 | MsG0280010158.01 | 0.808887 | 2.483223e-50 | 1.436583e-47 |
| MsG0180002799.01 | MsG0280010350.01 | 0.806396 | 8.393407e-50 | 4.550740e-47 |
| MsG0180002799.01 | MsG0280010517.01 | 0.816172 | 6.341941e-52 | 4.461289e-49 |
| MsG0180002799.01 | MsG0280010598.01 | 0.803480 | 3.417439e-49 | 1.719226e-46 |
| MsG0180002799.01 | MsG0280010599.01 | 0.815122 | 1.086923e-51 | 7.428773e-49 |
| MsG0180002799.01 | MsG0280010753.01 | 0.805833 | 1.103116e-49 | 5.895689e-47 |
| MsG0180002799.01 | MsG0280011333.01 | 0.804109 | 2.529615e-49 | 1.293290e-46 |
| MsG0180002799.01 | MsG0380013686.01 | 0.802719 | 4.909380e-49 | 2.422197e-46 |
| MsG0180002799.01 | MsG0380014727.01 | 0.820935 | 5.272990e-53 | 4.230446e-50 |
| MsG0180002799.01 | MsG0380014866.01 | 0.848628 | 5.428243e-60 | 1.002259e-56 |
| MsG0180002799.01 | MsG0380016387.01 | 0.817671 | 2.922711e-52 | 2.142123e-49 |
| MsG0180002799.01 | MsG0380016740.01 | 0.800848 | 1.188867e-48 | 5.593695e-46 |
| MsG0180002799.01 | MsG0380017201.01 | 0.809583 | 1.761547e-50 | 1.038291e-47 |
| MsG0180002799.01 | MsG0380017229.01 | 0.820084 | 8.266641e-53 | 6.477819e-50 |
| MsG0180002799.01 | MsG0380017244.01 | 0.804339 | 2.265524e-49 | 1.165125e-46 |
| MsG0180002799.01 | MsG0380017293.01 | 0.802053 | 6.734526e-49 | 3.266672e-46 |
| MsG0180002799.01 | MsG0380017401.01 | 0.822306 | 2.542069e-53 | 2.119760e-50 |
| MsG0180002799.01 | MsG0380017433.01 | 0.822048 | 2.917401e-53 | 2.414698e-50 |
| MsG0180002799.01 | MsG0380017528.01 | 0.800335 | 1.512504e-48 | 7.024399e-46 |
| MsG0180002799.01 | MsG0480019007.01 | 0.800533 | 1.378342e-48 | 6.433296e-46 |
| MsG0180002799.01 | MsG0480020024.01 | 0.837134 | 6.217180e-57 | 8.000685e-54 |
| MsG0180002799.01 | MsG0480020505.01 | 0.800970 | 1.122614e-48 | 5.298502e-46 |
| MsG0180002799.01 | MsG0480021870.01 | 0.826286 | 2.949283e-54 | 2.753910e-51 |
| MsG0180002799.01 | MsG0480022624.01 | 0.829652 | 4.566290e-55 | 4.702934e-52 |
| MsG0180002799.01 | MsG0480023172.01 | 0.811614 | 6.411611e-51 | 3.987092e-48 |
| MsG0180002799.01 | MsG0480023670.01 | 0.801550 | 8.541017e-49 | 4.090309e-46 |
| MsG0180002799.01 | MsG0480023978.01 | 0.800927 | 1.145670e-48 | 5.401278e-46 |
| MsG0180002799.01 | MsG0580024829.01 | 0.828719 | 7.688629e-55 | 7.704489e-52 |
| MsG0180002799.01 | MsG0580024833.01 | 0.809438 | 1.892298e-50 | 1.111019e-47 |
| MsG0180002799.01 | MsG0580025900.01 | 0.800847 | 1.189577e-48 | 5.596860e-46 |
| MsG0180002799.01 | MsG0580025922.01 | 0.823748 | 1.172041e-53 | 1.018192e-50 |
| MsG0180002799.01 | MsG0580029550.01 | 0.822917 | 1.832835e-53 | 1.555137e-50 |
| MsG0180002799.01 | MsG0580029919.01 | 0.823344 | 1.456690e-53 | 1.250852e-50 |
| MsG0180002799.01 | MsG0680030616.01 | 0.802108 | 6.558537e-49 | 3.185796e-46 |
| MsG0180002799.01 | MsG0680033465.01 | 0.836721 | 7.926635e-57 | 1.007457e-53 |
| MsG0180002799.01 | MsG0680034235.01 | 0.870212 | 1.730301e-66 | 6.676501e-63 |
| MsG0180002799.01 | MsG0780037330.01 | 0.804679 | 1.923980e-49 | 9.982099e-47 |
| MsG0180002799.01 | MsG0780037701.01 | 0.804494 | 2.103256e-49 | 1.085968e-46 |
| MsG0180002799.01 | MsG0780038378.01 | 0.815107 | 1.094883e-51 | 7.480209e-49 |
| MsG0180002799.01 | MsG0780039155.01 | 0.813368 | 2.651780e-51 | 1.728490e-48 |
| MsG0180002799.01 | MsG0780039261.01 | 0.801293 | 9.641553e-49 | 4.587709e-46 |
| MsG0180002799.01 | MsG0780040254.01 | 0.800787 | 1.223296e-48 | 5.746443e-46 |
| MsG0180002799.01 | MsG0780041091.01 | 0.804202 | 2.419453e-49 | 1.239892e-46 |
| MsG0180002799.01 | MsG0780041187.01 | 0.810018 | 1.419857e-50 | 8.465575e-48 |
| MsG0180002799.01 | MsG0780041482.01 | 0.816905 | 4.346325e-52 | 3.119317e-49 |
| MsG0180002799.01 | MsG0780041729.01 | -0.800282 | 1.550778e-48 | 7.192500e-46 |
| MsG0180002799.01 | MsG0780041734.01 | -0.828581 | 8.304433e-55 | 8.288604e-52 |
| MsG0180002799.01 | MsG0780041767.01 | 0.802014 | 6.857026e-49 | 3.322830e-46 |
| MsG0180002799.01 | MsG0880043014.01 | 0.802746 | 4.847665e-49 | 2.393362e-46 |
| MsG0180002799.01 | MsG0880043157.01 | 0.810749 | 9.872644e-51 | 6.000943e-48 |
| MsG0180002799.01 | MsG0880046809.01 | 0.803036 | 4.221606e-49 | 2.099646e-46 |
| MsG0180002799.01 | MsG0880047252.01 | 0.802883 | 4.540279e-49 | 2.249415e-46 |
| MsG0180002799.01 | MsG0880047285.01 | -0.803397 | 3.555109e-49 | 1.784647e-46 |
| MsG0180002799.01 | MsG0880047519.01 | 0.822311 | 2.535179e-53 | 2.114355e-50 |
| MsG0180002799.01 | MsG0880047696.01 | 0.841996 | 3.385411e-58 | 5.062059e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002799.01.T01 | MTR_4g008650 | 92.908 | 141 | 10 | 0 | 1 | 141 | 442 | 582 | 2.43e-86 | 270 |
| MsG0180002799.01.T01 | MTR_4g008650 | 92.908 | 141 | 10 | 0 | 1 | 141 | 442 | 582 | 4.88e-85 | 270 |
| MsG0180002799.01.T01 | MTR_8g090125 | 73.427 | 143 | 36 | 1 | 1 | 141 | 398 | 540 | 1.13e-65 | 216 |
| MsG0180002799.01.T01 | MTR_5g015590 | 56.738 | 141 | 59 | 1 | 1 | 141 | 446 | 584 | 3.12e-46 | 161 |
| MsG0180002799.01.T01 | MTR_5g015590 | 56.738 | 141 | 59 | 1 | 1 | 141 | 446 | 584 | 3.67e-46 | 161 |
| MsG0180002799.01.T01 | MTR_5g015590 | 56.738 | 141 | 59 | 1 | 1 | 141 | 446 | 584 | 4.48e-46 | 161 |
| MsG0180002799.01.T01 | MTR_5g015590 | 56.738 | 141 | 59 | 1 | 1 | 141 | 446 | 584 | 4.80e-46 | 160 |
| MsG0180002799.01.T01 | MTR_4g043690 | 61.379 | 145 | 52 | 2 | 1 | 141 | 445 | 589 | 4.67e-45 | 158 |
| MsG0180002799.01.T01 | MTR_0005s0140 | 61.379 | 145 | 52 | 2 | 1 | 141 | 360 | 504 | 5.33e-45 | 158 |
| MsG0180002799.01.T01 | MTR_8g446010 | 60.993 | 141 | 55 | 0 | 1 | 141 | 398 | 538 | 1.18e-44 | 157 |
| MsG0180002799.01.T01 | MTR_3g103070 | 54.610 | 141 | 64 | 0 | 1 | 141 | 271 | 411 | 4.56e-43 | 152 |
| MsG0180002799.01.T01 | MTR_3g103070 | 54.610 | 141 | 64 | 0 | 1 | 141 | 447 | 587 | 4.66e-43 | 152 |
| MsG0180002799.01.T01 | MTR_4g096990 | 55.319 | 141 | 59 | 1 | 1 | 141 | 446 | 582 | 4.80e-42 | 149 |
| MsG0180002799.01.T01 | MTR_8g045070 | 53.191 | 141 | 43 | 1 | 1 | 141 | 398 | 515 | 1.31e-33 | 125 |
| MsG0180002799.01.T01 | MTR_2g105830 | 38.732 | 142 | 81 | 2 | 1 | 141 | 493 | 629 | 2.39e-20 | 87.4 |
| MsG0180002799.01.T01 | MTR_4g008170 | 36.620 | 142 | 83 | 2 | 1 | 141 | 504 | 639 | 4.14e-20 | 86.7 |
| MsG0180002799.01.T01 | MTR_4g008170 | 36.620 | 142 | 83 | 2 | 1 | 141 | 511 | 646 | 5.02e-20 | 86.7 |
| MsG0180002799.01.T01 | MTR_2g038310 | 34.266 | 143 | 84 | 3 | 1 | 141 | 491 | 625 | 3.79e-17 | 78.2 |
| MsG0180002799.01.T01 | MTR_2g038310 | 34.266 | 143 | 84 | 3 | 1 | 141 | 491 | 625 | 4.30e-17 | 78.2 |
| MsG0180002799.01.T01 | MTR_6g016470 | 35.616 | 146 | 82 | 4 | 1 | 141 | 433 | 571 | 2.68e-16 | 75.9 |
| MsG0180002799.01.T01 | MTR_7g095710 | 34.483 | 145 | 84 | 4 | 1 | 141 | 461 | 598 | 2.60e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002799.01.T01 | AT2G41560 | 65.957 | 141 | 47 | 1 | 1 | 141 | 340 | 479 | 7.08e-55 | 186 |
| MsG0180002799.01.T01 | AT2G41560 | 65.957 | 141 | 47 | 1 | 1 | 141 | 340 | 479 | 7.08e-55 | 186 |
| MsG0180002799.01.T01 | AT2G41560 | 65.957 | 141 | 47 | 1 | 1 | 141 | 340 | 479 | 7.08e-55 | 186 |
| MsG0180002799.01.T01 | AT2G41560 | 65.957 | 141 | 47 | 1 | 1 | 141 | 442 | 581 | 7.51e-55 | 186 |
| MsG0180002799.01.T01 | AT3G57330 | 62.411 | 141 | 49 | 1 | 1 | 141 | 387 | 523 | 3.89e-53 | 181 |
| MsG0180002799.01.T01 | AT3G57330 | 62.411 | 141 | 49 | 1 | 1 | 141 | 442 | 578 | 4.12e-53 | 181 |
| MsG0180002799.01.T01 | AT1G27770 | 53.191 | 141 | 66 | 0 | 1 | 141 | 384 | 524 | 6.81e-43 | 152 |
| MsG0180002799.01.T01 | AT1G27770 | 53.191 | 141 | 66 | 0 | 1 | 141 | 447 | 587 | 7.34e-43 | 152 |
| MsG0180002799.01.T01 | AT1G27770 | 53.191 | 141 | 66 | 0 | 1 | 141 | 447 | 587 | 7.34e-43 | 152 |
| MsG0180002799.01.T01 | AT1G27770 | 53.191 | 141 | 66 | 0 | 1 | 141 | 447 | 587 | 7.76e-43 | 152 |
| MsG0180002799.01.T01 | AT4G37640 | 52.817 | 142 | 64 | 2 | 1 | 141 | 445 | 584 | 8.10e-40 | 143 |
| MsG0180002799.01.T01 | AT2G22950 | 53.521 | 142 | 63 | 2 | 1 | 141 | 446 | 585 | 2.01e-39 | 142 |
| MsG0180002799.01.T01 | AT4G29900 | 36.879 | 141 | 83 | 2 | 1 | 141 | 473 | 607 | 1.36e-20 | 88.2 |
| MsG0180002799.01.T01 | AT4G29900 | 36.879 | 141 | 83 | 2 | 1 | 141 | 473 | 607 | 1.36e-20 | 88.2 |
| MsG0180002799.01.T01 | AT3G63380 | 38.194 | 144 | 79 | 5 | 1 | 141 | 444 | 580 | 2.51e-17 | 79.0 |
| MsG0180002799.01.T01 | AT5G57110 | 35.915 | 142 | 80 | 3 | 1 | 141 | 473 | 604 | 3.46e-17 | 78.6 |
| MsG0180002799.01.T01 | AT5G57110 | 35.915 | 142 | 80 | 3 | 1 | 141 | 473 | 604 | 3.46e-17 | 78.6 |
| MsG0180002799.01.T01 | AT5G57110 | 35.915 | 142 | 80 | 3 | 1 | 141 | 473 | 604 | 3.46e-17 | 78.6 |
| MsG0180002799.01.T01 | AT3G21180 | 30.282 | 142 | 92 | 2 | 1 | 141 | 486 | 621 | 9.10e-14 | 68.6 |
| MsG0180002799.01.T01 | AT3G22910 | 35.811 | 148 | 76 | 6 | 1 | 141 | 440 | 575 | 2.32e-11 | 61.6 |
Find 35 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAATTTGGCTTGGTTTC+AGG | 0.088234 | 1:-45457506 | MsG0180002799.01.T01:CDS |
| ATATGGTGGTTGATAAAATT+TGG | 0.156993 | 1:-45457709 | MsG0180002799.01.T01:CDS |
| ATCAGAAATGTTGCCGATTT+GGG | 0.249540 | 1:-45457354 | MsG0180002799.01.T01:CDS |
| CATCAGAAATGTTGCCGATT+TGG | 0.253064 | 1:-45457355 | MsG0180002799.01.T01:CDS |
| GAATCAGCAATACTGGAATT+TGG | 0.255403 | 1:-45457518 | MsG0180002799.01.T01:CDS |
| CTCAACCTTAAGTACCTTAC+AGG | 0.303221 | 1:+45457457 | None:intergenic |
| AATCTCTGATTTCAACTTAT+CGG | 0.303785 | 1:+45457646 | None:intergenic |
| AGAAGGAAAACAGACAATAC+TGG | 0.344901 | 1:-45457552 | MsG0180002799.01.T01:CDS |
| ACCAACAGAATCAGCAATAC+TGG | 0.363574 | 1:-45457525 | MsG0180002799.01.T01:CDS |
| TATATTTCAGAATACTTCTT+CGG | 0.415739 | 1:-45457591 | MsG0180002799.01.T01:CDS |
| TTAATTCGAGGGAATGTCAT+TGG | 0.422010 | 1:-45457326 | MsG0180002799.01.T01:CDS |
| TAGATCCTGTAAGGTACTTA+AGG | 0.436221 | 1:-45457462 | MsG0180002799.01.T01:CDS |
| AGCAATACTGGAATTTGGCT+TGG | 0.474761 | 1:-45457513 | MsG0180002799.01.T01:CDS |
| AAAGCTCGGAACCCTCCATC+AGG | 0.501465 | 1:+45457389 | None:intergenic |
| TCTGAAATATAGCCTGCAAA+AGG | 0.510920 | 1:+45457603 | None:intergenic |
| GGGTTCCGAGCTTTCTGCAA+AGG | 0.512141 | 1:-45457380 | MsG0180002799.01.T01:CDS |
| TTCTTCCTGTCTGAATTGAA+AGG | 0.527349 | 1:+45457434 | None:intergenic |
| TGCACAGCATAGATCCTGTA+AGG | 0.528305 | 1:-45457471 | MsG0180002799.01.T01:CDS |
| CTAGTAGGTCTTCCTGATGG+AGG | 0.535876 | 1:-45457401 | MsG0180002799.01.T01:CDS |
| TCCAGTATTGCTGATTCTGT+TGG | 0.540202 | 1:+45457524 | None:intergenic |
| TCAGAAATGTTGCCGATTTG+GGG | 0.547944 | 1:-45457353 | MsG0180002799.01.T01:CDS |
| AAGAAGATGTCGGTGCTAGT+AGG | 0.550515 | 1:-45457416 | MsG0180002799.01.T01:CDS |
| AACGTTGACAAACAACCATA+TGG | 0.552998 | 1:-45457726 | MsG0180002799.01.T01:CDS |
| TTGAGCCTTTCAATTCAGAC+AGG | 0.555436 | 1:-45457439 | MsG0180002799.01.T01:CDS |
| ATGCACCTTTGCAGAAAGCT+CGG | 0.556163 | 1:+45457375 | None:intergenic |
| GAAGTAGTTAAAGACAAAGA+AGG | 0.556974 | 1:-45457569 | MsG0180002799.01.T01:CDS |
| GAAGGAAAACAGACAATACT+GGG | 0.566868 | 1:-45457551 | MsG0180002799.01.T01:CDS |
| TAGTAGGTCTTCCTGATGGA+GGG | 0.573123 | 1:-45457400 | MsG0180002799.01.T01:CDS |
| GAATTTGGCTTGGTTTCAGG+TGG | 0.577510 | 1:-45457503 | MsG0180002799.01.T01:CDS |
| GTGCTAGTAGGTCTTCCTGA+TGG | 0.581135 | 1:-45457404 | MsG0180002799.01.T01:CDS |
| CAGAAATGTTGCCGATTTGG+GGG | 0.589263 | 1:-45457352 | MsG0180002799.01.T01:CDS |
| GAAAAGACTGTGGAGATGAA+AGG | 0.645618 | 1:-45457680 | MsG0180002799.01.T01:CDS |
| TTCAGACAGGAAGAAGATGT+CGG | 0.657425 | 1:-45457426 | MsG0180002799.01.T01:CDS |
| TTGGATATGTGAAAAGACTG+TGG | 0.658651 | 1:-45457690 | MsG0180002799.01.T01:CDS |
| GTTGACAAACAACCATATGG+TGG | 0.706114 | 1:-45457723 | MsG0180002799.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTCAGAATACTTCTT+CGG | - | Chr1:45457453-45457472 | MsG0180002799.01.T01:CDS | 20.0% |
| ! | AATCTCTGATTTCAACTTAT+CGG | + | Chr1:45457401-45457420 | None:intergenic | 25.0% |
| !! | AAATTTTATCAACCACCATA+TGG | + | Chr1:45457336-45457355 | None:intergenic | 25.0% |
| !!! | ATATGGTGGTTGATAAAATT+TGG | - | Chr1:45457335-45457354 | MsG0180002799.01.T01:CDS | 25.0% |
| GAAGTAGTTAAAGACAAAGA+AGG | - | Chr1:45457475-45457494 | MsG0180002799.01.T01:CDS | 30.0% | |
| AACGTTGACAAACAACCATA+TGG | - | Chr1:45457318-45457337 | MsG0180002799.01.T01:CDS | 35.0% | |
| AGAAGGAAAACAGACAATAC+TGG | - | Chr1:45457492-45457511 | MsG0180002799.01.T01:CDS | 35.0% | |
| CGAATTAAAATCCCCCAAAT+CGG | + | Chr1:45457706-45457725 | None:intergenic | 35.0% | |
| GAAGGAAAACAGACAATACT+GGG | - | Chr1:45457493-45457512 | MsG0180002799.01.T01:CDS | 35.0% | |
| GAATCAGCAATACTGGAATT+TGG | - | Chr1:45457526-45457545 | MsG0180002799.01.T01:CDS | 35.0% | |
| TTAATTCGAGGGAATGTCAT+TGG | - | Chr1:45457718-45457737 | MsG0180002799.01.T01:CDS | 35.0% | |
| TTCTTCCTGTCTGAATTGAA+AGG | + | Chr1:45457613-45457632 | None:intergenic | 35.0% | |
| TTGGATATGTGAAAAGACTG+TGG | - | Chr1:45457354-45457373 | MsG0180002799.01.T01:CDS | 35.0% | |
| ! | TAGATCCTGTAAGGTACTTA+AGG | - | Chr1:45457582-45457601 | MsG0180002799.01.T01:CDS | 35.0% |
| ! | TCTGAAATATAGCCTGCAAA+AGG | + | Chr1:45457444-45457463 | None:intergenic | 35.0% |
| !! | AATGTCATTGGTCGTTTTCT+TGG | - | Chr1:45457730-45457749 | MsG0180002799.01.T01:CDS | 35.0% |
| !! | ATCAGAAATGTTGCCGATTT+GGG | - | Chr1:45457690-45457709 | MsG0180002799.01.T01:CDS | 35.0% |
| !! | GAGATGCTCTCTTTTTGTTT+GGG | - | Chr1:45457752-45457771 | MsG0180002799.01.T01:CDS | 35.0% |
| !!! | ATTTGGGGGATTTTAATTCG+AGG | - | Chr1:45457706-45457725 | MsG0180002799.01.T01:CDS | 35.0% |
| !!! | TTTGGGGGATTTTAATTCGA+GGG | - | Chr1:45457707-45457726 | MsG0180002799.01.T01:CDS | 35.0% |
| ACCAACAGAATCAGCAATAC+TGG | - | Chr1:45457519-45457538 | MsG0180002799.01.T01:CDS | 40.0% | |
| AGCAATACTGGAATTTGGCT+TGG | - | Chr1:45457531-45457550 | MsG0180002799.01.T01:CDS | 40.0% | |
| CTCAACCTTAAGTACCTTAC+AGG | + | Chr1:45457590-45457609 | None:intergenic | 40.0% | |
| GAAAAGACTGTGGAGATGAA+AGG | - | Chr1:45457364-45457383 | MsG0180002799.01.T01:CDS | 40.0% | |
| GTTGACAAACAACCATATGG+TGG | - | Chr1:45457321-45457340 | MsG0180002799.01.T01:CDS | 40.0% | |
| TTCAGACAGGAAGAAGATGT+CGG | - | Chr1:45457618-45457637 | MsG0180002799.01.T01:CDS | 40.0% | |
| TTGAGCCTTTCAATTCAGAC+AGG | - | Chr1:45457605-45457624 | MsG0180002799.01.T01:CDS | 40.0% | |
| ! | CATCAGAAATGTTGCCGATT+TGG | - | Chr1:45457689-45457708 | MsG0180002799.01.T01:CDS | 40.0% |
| ! | GGAGATGCTCTCTTTTTGTT+TGG | - | Chr1:45457751-45457770 | MsG0180002799.01.T01:CDS | 40.0% |
| !! | TCAGAAATGTTGCCGATTTG+GGG | - | Chr1:45457691-45457710 | MsG0180002799.01.T01:CDS | 40.0% |
| !! | TCCAGTATTGCTGATTCTGT+TGG | + | Chr1:45457523-45457542 | None:intergenic | 40.0% |
| !!! | AGTTCTAAGCATCCTTTTGC+AGG | - | Chr1:45457429-45457448 | MsG0180002799.01.T01:CDS | 40.0% |
| ATGCACCTTTGCAGAAAGCT+CGG | + | Chr1:45457672-45457691 | None:intergenic | 45.0% | |
| TAGTAGGTCTTCCTGATGGA+GGG | - | Chr1:45457644-45457663 | MsG0180002799.01.T01:CDS | 45.0% | |
| TGCACAGCATAGATCCTGTA+AGG | - | Chr1:45457573-45457592 | MsG0180002799.01.T01:CDS | 45.0% | |
| !! | AAGAAGATGTCGGTGCTAGT+AGG | - | Chr1:45457628-45457647 | MsG0180002799.01.T01:CDS | 45.0% |
| !! | CAGAAATGTTGCCGATTTGG+GGG | - | Chr1:45457692-45457711 | MsG0180002799.01.T01:CDS | 45.0% |
| !! | CTGGAATTTGGCTTGGTTTC+AGG | - | Chr1:45457538-45457557 | MsG0180002799.01.T01:CDS | 45.0% |
| !! | GAATTTGGCTTGGTTTCAGG+TGG | - | Chr1:45457541-45457560 | MsG0180002799.01.T01:CDS | 45.0% |
| CTAGTAGGTCTTCCTGATGG+AGG | - | Chr1:45457643-45457662 | MsG0180002799.01.T01:CDS | 50.0% | |
| GTGCTAGTAGGTCTTCCTGA+TGG | - | Chr1:45457640-45457659 | MsG0180002799.01.T01:CDS | 50.0% | |
| AAAGCTCGGAACCCTCCATC+AGG | + | Chr1:45457658-45457677 | None:intergenic | 55.0% | |
| GGGTTCCGAGCTTTCTGCAA+AGG | - | Chr1:45457664-45457683 | MsG0180002799.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 45457280 | 45457786 | 45457280 | ID=MsG0180002799.01;Name=MsG0180002799.01 |
| Chr1 | mRNA | 45457280 | 45457786 | 45457280 | ID=MsG0180002799.01.T01;Parent=MsG0180002799.01;Name=MsG0180002799.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|168 |
| Chr1 | exon | 45457280 | 45457786 | 45457280 | ID=MsG0180002799.01.T01:exon:38643;Parent=MsG0180002799.01.T01 |
| Chr1 | CDS | 45457280 | 45457786 | 45457280 | ID=MsG0180002799.01.T01:cds;Parent=MsG0180002799.01.T01 |
| Gene Sequence |
| Protein sequence |
