AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010753.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010753.01.T01 MTR_2g451540 52.414 290 56 4 227 434 359 648 7.57e-81 264
MsG0280010753.01.T01 MTR_2g451540 63.066 287 32 3 1 213 1 287 4.10e-75 249
MsG0280010753.01.T01 MTR_1g012840 29.167 264 96 6 267 439 377 640 6.93e-24 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010753.01.T01 AT2G25290 30.483 269 94 7 263 439 401 668 8.03e-27 114
MsG0280010753.01.T01 AT2G25290 30.483 269 94 7 263 439 401 668 8.03e-27 114
MsG0280010753.01.T01 AT2G25290 30.483 269 94 7 263 439 401 668 8.03e-27 114
MsG0280010753.01.T01 AT2G25290 30.483 269 94 7 263 439 401 668 8.03e-27 114
MsG0280010753.01.T01 AT4G32070 30.128 312 115 11 227 439 398 705 1.88e-26 113
MsG0280010753.01.T01 AT4G32070 30.128 312 115 11 227 439 398 705 1.88e-26 113
MsG0280010753.01.T01 AT5G20360 24.032 620 245 16 37 439 33 643 2.43e-21 97.4
MsG0280010753.01.T01 AT5G20360 24.032 620 245 16 37 439 33 643 2.43e-21 97.4
MsG0280010753.01.T01 AT5G20360 24.032 620 245 16 37 439 63 673 2.65e-21 97.4
MsG0280010753.01.T01 AT5G20360 24.032 620 245 16 37 439 63 673 2.65e-21 97.4
MsG0280010753.01.T01 AT5G20360 24.032 620 245 16 37 439 123 733 3.53e-21 97.1
MsG0280010753.01.T01 AT5G20360 24.032 620 245 16 37 439 123 733 3.53e-21 97.1
MsG0280010753.01.T01 AT5G20360 24.032 620 245 16 37 439 113 723 3.67e-21 97.1

Find 87 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTGTCGAATTCAAATT+AGG 0.124452 2:-74412450 MsG0280010753.01.T01:CDS
GGAGAAACAAGTGAAGAAAA+TGG 0.245674 2:-74414318 MsG0280010753.01.T01:CDS
GAAAACAGCAAAACTTGTTT+TGG 0.281892 2:-74413482 MsG0280010753.01.T01:intron
GGCGATTAATGAATGCAATT+TGG 0.285660 2:-74414051 MsG0280010753.01.T01:CDS
TGATCGTCCTCAGCCTTATT+TGG 0.310717 2:+74413631 None:intergenic
TTCGAACAAGCGAAACTTCC+TGG 0.312187 2:-74412728 MsG0280010753.01.T01:CDS
CAGCTCTAGCATTGTTCAAT+TGG 0.314408 2:-74412950 MsG0280010753.01.T01:CDS
TTCAGCACACAACCGTTCTT+AGG 0.315293 2:+74413183 None:intergenic
CACTTGTCGAATTCAAATTA+GGG 0.324137 2:-74412449 MsG0280010753.01.T01:CDS
GGACAACATTGCACCAAATA+AGG 0.342512 2:-74413644 MsG0280010753.01.T01:CDS
TCATAGAACGGATCGTGATT+AGG 0.372604 2:+74413252 None:intergenic
AGCTCTAGCATTGTTCAATT+GGG 0.381899 2:-74412949 MsG0280010753.01.T01:CDS
GCATTGTTCAATTGGGGAAA+TGG 0.387335 2:-74412942 MsG0280010753.01.T01:CDS
ATGCTGAGGAGAATGGAAAA+AGG 0.398349 2:-74412636 MsG0280010753.01.T01:CDS
TAAGCAGAAAGAGGATGTTA+AGG 0.407983 2:-74413551 MsG0280010753.01.T01:CDS
TCCAACGCCATGATATTATT+CGG 0.416082 2:+74413914 None:intergenic
TGATGTGGAAAAGGTTGAAA+TGG 0.417154 2:-74413214 MsG0280010753.01.T01:CDS
GAGAAACAAGTGAAGAAAAT+GGG 0.422130 2:-74414317 MsG0280010753.01.T01:CDS
ACCCGTATGGCATGAATCAT+TGG 0.428713 2:-74412424 MsG0280010753.01.T01:CDS
AACATTACAGCTACATCTGT+TGG 0.438941 2:+74412364 None:intergenic
GCTCATCTTGTGTTGAGGAT+TGG 0.446370 2:-74413143 MsG0280010753.01.T01:CDS
TTCTTTAGAAGAATCTTCTT+CGG 0.448789 2:+74412885 None:intergenic
TGCTATATGCAGATGGGACT+TGG 0.465994 2:-74414086 MsG0280010753.01.T01:intron
TGGGGAAATGGCATATGTCT+AGG 0.467367 2:-74412930 MsG0280010753.01.T01:CDS
AAAAGTGCACTTGAAGATAG+AGG 0.467750 2:-74413875 MsG0280010753.01.T01:CDS
ACCTCCACTACGGGTTGGAT+GGG 0.472177 2:-74412570 MsG0280010753.01.T01:CDS
TACAACAATGCTGAGGAGAA+TGG 0.478019 2:-74412643 MsG0280010753.01.T01:CDS
AACCTCCACTACGGGTTGGA+TGG 0.480849 2:-74412571 MsG0280010753.01.T01:CDS
GTCACAGATAAATCTCTTGT+GGG 0.488756 2:-74412493 MsG0280010753.01.T01:CDS
GAAACTAGAAGAGAAGAAAG+AGG 0.489348 2:-74413668 MsG0280010753.01.T01:CDS
TGGGACTTGGTGAGTACCCT+AGG 0.490644 2:-74414073 MsG0280010753.01.T01:CDS
TCAGATGAAAACTGCTGAGC+TGG 0.497863 2:-74412529 MsG0280010753.01.T01:CDS
TACTTTGTTGTTTATTGCCA+CGG 0.500099 2:-74414247 MsG0280010753.01.T01:CDS
GTGGGCTGAAACAGGATCAC+AGG 0.502534 2:-74413305 MsG0280010753.01.T01:intron
CTCAGTGAAACCTCCACTAC+GGG 0.507557 2:-74412579 MsG0280010753.01.T01:CDS
TCTTGAAGTTACTCCTAAAA+CGG 0.508149 2:-74414027 MsG0280010753.01.T01:intron
TTCCAATGATTCATGCCATA+CGG 0.509759 2:+74412422 None:intergenic
GTAATAAGATGTTTCAAAAG+AGG 0.513730 2:-74414203 MsG0280010753.01.T01:CDS
GCCGAATAATATCATGGCGT+TGG 0.518149 2:-74413915 MsG0280010753.01.T01:CDS
GTATCATTATCATACGCATT+CGG 0.522823 2:+74414267 None:intergenic
TCGTCTGAATGATGTGGAAA+AGG 0.524502 2:-74413223 MsG0280010753.01.T01:CDS
TCAAATTAGGGCTACCCGTA+TGG 0.527716 2:-74412437 MsG0280010753.01.T01:CDS
TCCAATGATTCATGCCATAC+GGG 0.528365 2:+74412423 None:intergenic
ATTGAGAAGTTTGAACATGC+AGG 0.530473 2:-74412394 MsG0280010753.01.T01:CDS
TTCCTTCAATTCTTGAGCCG+TGG 0.532904 2:+74414230 None:intergenic
TTGCATTCATTAATCGCCCT+AGG 0.542158 2:+74414056 None:intergenic
TAATAAGATGTTTCAAAAGA+GGG 0.549709 2:-74414202 MsG0280010753.01.T01:CDS
TGCCACGGCTCAAGAATTGA+AGG 0.552256 2:-74414232 MsG0280010753.01.T01:CDS
GCTCAAGAATTGAAGGAAGA+AGG 0.553736 2:-74414225 MsG0280010753.01.T01:CDS
TGTTAGCTCATCTTGTGTTG+AGG 0.554112 2:-74413148 MsG0280010753.01.T01:CDS
GGGGAAATGGCATATGTCTA+GGG 0.566191 2:-74412929 MsG0280010753.01.T01:CDS
GGCGTTGGAGATCTCAGATA+AGG 0.572016 2:-74413900 MsG0280010753.01.T01:CDS
CTGAGCTGGCGGCAAACATG+AGG 0.575937 2:-74412515 MsG0280010753.01.T01:CDS
GGTCACAGATAAATCTCTTG+TGG 0.578048 2:-74412494 MsG0280010753.01.T01:CDS
GAGGGATCTTCGAGGAGCGA+TGG 0.582733 2:-74414184 MsG0280010753.01.T01:intron
GTGAAACCTCCACTACGGGT+TGG 0.585659 2:-74412575 MsG0280010753.01.T01:CDS
ATGGATAATGCTCCTAAGAA+CGG 0.586076 2:-74413195 MsG0280010753.01.T01:CDS
GCTCAGTGAAACCTCCACTA+CGG 0.586713 2:-74412580 MsG0280010753.01.T01:CDS
GATGGAGCCGAATAATATCA+TGG 0.587956 2:-74413921 MsG0280010753.01.T01:CDS
GCTCTAGCATTGTTCAATTG+GGG 0.591057 2:-74412948 MsG0280010753.01.T01:CDS
TGCATTCATTAATCGCCCTA+GGG 0.591150 2:+74414057 None:intergenic
AGACGAAGTTTCTCATAGAA+CGG 0.594449 2:+74413240 None:intergenic
GCAGAAAGAGGATGTTAAGG+AGG 0.597588 2:-74413548 MsG0280010753.01.T01:CDS
TTTCAAAAGAGGGATCTTCG+AGG 0.598758 2:-74414192 MsG0280010753.01.T01:CDS
ACCCATCCAACCCGTAGTGG+AGG 0.617937 2:+74412569 None:intergenic
AAAGTGCACTTGAAGATAGA+GGG 0.617952 2:-74413874 MsG0280010753.01.T01:intron
GATGAAAACTGCTGAGCTGG+CGG 0.618914 2:-74412526 MsG0280010753.01.T01:CDS
ATAACCCATCCAACCCGTAG+TGG 0.619270 2:+74412566 None:intergenic
TCATCTTTACAACAATGCTG+AGG 0.623420 2:-74412650 MsG0280010753.01.T01:CDS
TAGCTTCTACTATATACAGT+CGG 0.639708 2:+74413276 None:intergenic
CGGTTGTGTGCTGAAATCAA+AGG 0.641172 2:-74413175 MsG0280010753.01.T01:CDS
AATGGCATATGTCTAGGGCA+AGG 0.641334 2:-74412924 MsG0280010753.01.T01:CDS
CATTGCACCAAATAAGGCTG+AGG 0.641965 2:-74413638 MsG0280010753.01.T01:CDS
ACTACTGAGTGCATAATACC+AGG 0.644085 2:+74412710 None:intergenic
GAAACTTCGTCTGAATGATG+TGG 0.644851 2:-74413229 MsG0280010753.01.T01:CDS
AAGATGAAGAACCTCTGTGG+AGG 0.649172 2:+74412666 None:intergenic
GGGACTTGGTGAGTACCCTA+GGG 0.649406 2:-74414072 MsG0280010753.01.T01:CDS
AATTGTAGAGAAGCAAGCTG+AGG 0.649987 2:-74413719 MsG0280010753.01.T01:CDS
ACTAGAAGAGAAGAAAGAGG+AGG 0.651831 2:-74413665 MsG0280010753.01.T01:CDS
AGATGAAGAACCTCTGTGGA+GGG 0.653251 2:+74412667 None:intergenic
AATGGGAATCATAGTAACGA+CGG 0.659552 2:-74414300 MsG0280010753.01.T01:CDS
TGGGCTGAAACAGGATCACA+GGG 0.674397 2:-74413304 MsG0280010753.01.T01:intron
ACTAGAAGAGAAACATGCTG+AGG 0.682343 2:-74413692 MsG0280010753.01.T01:CDS
AGTAATATAGATTTACGACA+TGG 0.685875 2:-74412690 MsG0280010753.01.T01:CDS
TCACAGATAAATCTCTTGTG+GGG 0.699010 2:-74412492 MsG0280010753.01.T01:CDS
TACGACATGGCCCTCCACAG+AGG 0.742103 2:-74412677 MsG0280010753.01.T01:CDS
GTAAAGATGAAGAACCTCTG+TGG 0.749593 2:+74412663 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATCTGACTTAATTTTAA+TGG + Chr2:74413935-74413954 None:intergenic 15.0%
!! AATTAAAAGTTCGTATGAAT+GGG - Chr2:74413867-74413886 MsG0280010753.01.T01:intron 20.0%
!! TAATAAGATGTTTCAAAAGA+GGG - Chr2:74412514-74412533 MsG0280010753.01.T01:CDS 20.0%
!!! ATACTTAGATTTTCATGAAT+GGG - Chr2:74413649-74413668 MsG0280010753.01.T01:CDS 20.0%
! AAAAATTGATAAGCAGAAAG+AGG - Chr2:74413156-74413175 MsG0280010753.01.T01:CDS 25.0%
! AGTAATATAGATTTACGACA+TGG - Chr2:74414026-74414045 MsG0280010753.01.T01:intron 25.0%
! ATGAAAATCTAAGTATCTGT+CGG + Chr2:74413645-74413664 None:intergenic 25.0%
! CAATTAAAAGTTCGTATGAA+TGG - Chr2:74413866-74413885 MsG0280010753.01.T01:intron 25.0%
! GTAAAATATAGAGATCAAGA+AGG - Chr2:74413352-74413371 MsG0280010753.01.T01:intron 25.0%
! GTAATAAGATGTTTCAAAAG+AGG - Chr2:74412513-74412532 MsG0280010753.01.T01:CDS 25.0%
! GTCAATGAAGAAAAAAGTAA+TGG - Chr2:74413190-74413209 MsG0280010753.01.T01:CDS 25.0%
!! ATTAAGTCAGATTTTTACGA+AGG - Chr2:74413940-74413959 MsG0280010753.01.T01:intron 25.0%
!! GATACTTAGATTTTCATGAA+TGG - Chr2:74413648-74413667 MsG0280010753.01.T01:CDS 25.0%
!! TTCTTTAGAAGAATCTTCTT+CGG + Chr2:74413834-74413853 None:intergenic 25.0%
!!! TTTTGGTGATGATATAAGAT+GGG - Chr2:74413251-74413270 MsG0280010753.01.T01:CDS 25.0%
AAAGATGGTTCAACATAATC+CGG + Chr2:74412900-74412919 None:intergenic 30.0%
AACTGTTCAAAAATCACGTT+GGG - Chr2:74413612-74413631 MsG0280010753.01.T01:CDS 30.0%
CACTTGTCGAATTCAAATTA+GGG - Chr2:74414267-74414286 MsG0280010753.01.T01:CDS 30.0%
GAAAAAGAGCAAAAAAGAGA+AGG - Chr2:74412959-74412978 MsG0280010753.01.T01:intron 30.0%
GAGAAACAAGTGAAGAAAAT+GGG - Chr2:74412399-74412418 MsG0280010753.01.T01:CDS 30.0%
GCGTAATAAATCGAAAAAGA+AGG - Chr2:74413123-74413142 MsG0280010753.01.T01:CDS 30.0%
GTATCATTATCATACGCATT+CGG + Chr2:74412452-74412471 None:intergenic 30.0%
TAACTTCTCTTAGCTGAAAA+AGG + Chr2:74413299-74413318 None:intergenic 30.0%
TAGCTTCTACTATATACAGT+CGG + Chr2:74413443-74413462 None:intergenic 30.0%
TCACTTGTCGAATTCAAATT+AGG - Chr2:74414266-74414285 MsG0280010753.01.T01:CDS 30.0%
TCTTGAAGTTACTCCTAAAA+CGG - Chr2:74412689-74412708 MsG0280010753.01.T01:CDS 30.0%
TTCAGATGAAGAATTGAAGT+GGG - Chr2:74413393-74413412 MsG0280010753.01.T01:intron 30.0%
! TTTTCTTTTGCCTTTTCTGA+AGG + Chr2:74412930-74412949 None:intergenic 30.0%
!! GAAAACAGCAAAACTTGTTT+TGG - Chr2:74413234-74413253 MsG0280010753.01.T01:CDS 30.0%
!! TACTTTGTTGTTTATTGCCA+CGG - Chr2:74412469-74412488 MsG0280010753.01.T01:CDS 30.0%
!! TTATGAGGCTTTGAATAGAT+TGG - Chr2:74412739-74412758 MsG0280010753.01.T01:intron 30.0%
!!! ACAAGTTTTGCTGTTTTCTT+AGG + Chr2:74413232-74413251 None:intergenic 30.0%
!!! CTGCTTATCAATTTTTTCCT+TGG + Chr2:74413152-74413171 None:intergenic 30.0%
!!! GTTTTGGTGATGATATAAGA+TGG - Chr2:74413250-74413269 MsG0280010753.01.T01:CDS 30.0%
!!! TGTTAGTACTGTTTTGAAGA+TGG - Chr2:74412777-74412796 MsG0280010753.01.T01:intron 30.0%
AAAGTGCACTTGAAGATAGA+GGG - Chr2:74412842-74412861 MsG0280010753.01.T01:intron 35.0%
AATGGGAATCATAGTAACGA+CGG - Chr2:74412416-74412435 MsG0280010753.01.T01:CDS 35.0%
AGACGAAGTTTCTCATAGAA+CGG + Chr2:74413479-74413498 None:intergenic 35.0%
ATATAGATGTGTCGTATGTG+CGG - Chr2:74412594-74412613 MsG0280010753.01.T01:CDS 35.0%
ATGGATAATGCTCCTAAGAA+CGG - Chr2:74413521-74413540 MsG0280010753.01.T01:CDS 35.0%
ATTGAGAAGTTTGAACATGC+AGG - Chr2:74414322-74414341 MsG0280010753.01.T01:CDS 35.0%
CAACTGTTCAAAAATCACGT+TGG - Chr2:74413611-74413630 MsG0280010753.01.T01:CDS 35.0%
CAGAAAGAATATGCAAAAGC+TGG - Chr2:74413892-74413911 MsG0280010753.01.T01:CDS 35.0%
CTTCAGATGAAGAATTGAAG+TGG - Chr2:74413392-74413411 MsG0280010753.01.T01:intron 35.0%
GAAACTAGAAGAGAAGAAAG+AGG - Chr2:74413048-74413067 MsG0280010753.01.T01:intron 35.0%
GACACATCTATATGATCTCT+CGG + Chr2:74412587-74412606 None:intergenic 35.0%
GCTAAGAGAAGTTATTTGTG+AGG - Chr2:74413305-74413324 MsG0280010753.01.T01:intron 35.0%
GGAAAAAGGAATGCTGATAT+GGG - Chr2:74414094-74414113 MsG0280010753.01.T01:intron 35.0%
GGAGAAACAAGTGAAGAAAA+TGG - Chr2:74412398-74412417 MsG0280010753.01.T01:CDS 35.0%
GGCGATTAATGAATGCAATT+TGG - Chr2:74412665-74412684 MsG0280010753.01.T01:CDS 35.0%
GTCACAGATAAATCTCTTGT+GGG - Chr2:74414223-74414242 MsG0280010753.01.T01:CDS 35.0%
TAAGCAGAAAGAGGATGTTA+AGG - Chr2:74413165-74413184 MsG0280010753.01.T01:CDS 35.0%
TCACAGATAAATCTCTTGTG+GGG - Chr2:74414224-74414243 MsG0280010753.01.T01:CDS 35.0%
TCATCTTTACAACAATGCTG+AGG - Chr2:74414066-74414085 MsG0280010753.01.T01:CDS 35.0%
TCCAACGCCATGATATTATT+CGG + Chr2:74412805-74412824 None:intergenic 35.0%
TGAAAAAGGCTGCAATTAAC+CGG + Chr2:74413285-74413304 None:intergenic 35.0%
TGATGTGGAAAAGGTTGAAA+TGG - Chr2:74413502-74413521 MsG0280010753.01.T01:CDS 35.0%
TGGAAAAAGGAATGCTGATA+TGG - Chr2:74414093-74414112 MsG0280010753.01.T01:intron 35.0%
TTCCAATGATTCATGCCATA+CGG + Chr2:74414297-74414316 None:intergenic 35.0%
! AAAAGTGCACTTGAAGATAG+AGG - Chr2:74412841-74412860 MsG0280010753.01.T01:intron 35.0%
! AGCTCTAGCATTGTTCAATT+GGG - Chr2:74413767-74413786 MsG0280010753.01.T01:CDS 35.0%
! ATTTTACAAGAACTGCTCCT+AGG + Chr2:74413339-74413358 None:intergenic 35.0%
! CAACAAAGCTTTACCGTTTT+AGG + Chr2:74412705-74412724 None:intergenic 35.0%
! TTTTGATGTGCCTTCAGAAA+AGG - Chr2:74412917-74412936 MsG0280010753.01.T01:CDS 35.0%
AATTGTAGAGAAGCAAGCTG+AGG - Chr2:74412997-74413016 MsG0280010753.01.T01:intron 40.0%
ACTACTGAGTGCATAATACC+AGG + Chr2:74414009-74414028 None:intergenic 40.0%
ACTAGAAGAGAAACATGCTG+AGG - Chr2:74413024-74413043 MsG0280010753.01.T01:intron 40.0%
ACTAGAAGAGAAGAAAGAGG+AGG - Chr2:74413051-74413070 MsG0280010753.01.T01:intron 40.0%
AGACGGTTACAAGTGAAGAA+GGG - Chr2:74413700-74413719 MsG0280010753.01.T01:CDS 40.0%
ATGCTGAGGAGAATGGAAAA+AGG - Chr2:74414080-74414099 MsG0280010753.01.T01:intron 40.0%
GAAACTTCGTCTGAATGATG+TGG - Chr2:74413487-74413506 MsG0280010753.01.T01:CDS 40.0%
GATGGAGCCGAATAATATCA+TGG - Chr2:74412795-74412814 MsG0280010753.01.T01:intron 40.0%
GCATTGTTCAATTGGGGAAA+TGG - Chr2:74413774-74413793 MsG0280010753.01.T01:CDS 40.0%
GCTCAAGAATTGAAGGAAGA+AGG - Chr2:74412491-74412510 MsG0280010753.01.T01:CDS 40.0%
GCTCTAGCATTGTTCAATTG+GGG - Chr2:74413768-74413787 MsG0280010753.01.T01:CDS 40.0%
GGACAACATTGCACCAAATA+AGG - Chr2:74413072-74413091 MsG0280010753.01.T01:intron 40.0%
GGGAAGAAAAAGAAGCAAGT+AGG - Chr2:74412377-74412396 MsG0280010753.01.T01:CDS 40.0%
GGTCACAGATAAATCTCTTG+TGG - Chr2:74414222-74414241 MsG0280010753.01.T01:CDS 40.0%
GTAAAGATGAAGAACCTCTG+TGG + Chr2:74414056-74414075 None:intergenic 40.0%
TACAACAATGCTGAGGAGAA+TGG - Chr2:74414073-74414092 MsG0280010753.01.T01:CDS 40.0%
TCATAGAACGGATCGTGATT+AGG + Chr2:74413467-74413486 None:intergenic 40.0%
TCCAATGATTCATGCCATAC+GGG + Chr2:74414296-74414315 None:intergenic 40.0%
TCGTCTGAATGATGTGGAAA+AGG - Chr2:74413493-74413512 MsG0280010753.01.T01:CDS 40.0%
TGCATTCATTAATCGCCCTA+GGG + Chr2:74412662-74412681 None:intergenic 40.0%
TGTTAGCTCATCTTGTGTTG+AGG - Chr2:74413568-74413587 MsG0280010753.01.T01:CDS 40.0%
TTGCATTCATTAATCGCCCT+AGG + Chr2:74412663-74412682 None:intergenic 40.0%
TTTCAAAAGAGGGATCTTCG+AGG - Chr2:74412524-74412543 MsG0280010753.01.T01:CDS 40.0%
! CAGCTCTAGCATTGTTCAAT+TGG - Chr2:74413766-74413785 MsG0280010753.01.T01:CDS 40.0%
! TATAAGATGGGCTCAATTGC+CGG - Chr2:74413263-74413282 MsG0280010753.01.T01:CDS 40.0%
! TCTGAAGGCACATCAAAAGA+TGG + Chr2:74412915-74412934 None:intergenic 40.0%
! TGAGAAAATTGAGTTGCCTC+CGG - Chr2:74412878-74412897 MsG0280010753.01.T01:CDS 40.0%
AAGATGAAGAACCTCTGTGG+AGG + Chr2:74414053-74414072 None:intergenic 45.0%
ACCCGTATGGCATGAATCAT+TGG - Chr2:74414292-74414311 MsG0280010753.01.T01:CDS 45.0%
AGATGAAGAACCTCTGTGGA+GGG + Chr2:74414052-74414071 None:intergenic 45.0%
ATCGAAAAAGAAGGCAGCCA+AGG - Chr2:74413132-74413151 MsG0280010753.01.T01:CDS 45.0%
ATGCTAGAGCTGTCATCTCT+TGG + Chr2:74413758-74413777 None:intergenic 45.0%
CATTGCACCAAATAAGGCTG+AGG - Chr2:74413078-74413097 MsG0280010753.01.T01:intron 45.0%
CGGTTGTGTGCTGAAATCAA+AGG - Chr2:74413541-74413560 MsG0280010753.01.T01:CDS 45.0%
GAGACGGTTACAAGTGAAGA+AGG - Chr2:74413699-74413718 MsG0280010753.01.T01:CDS 45.0%
GATGGTTCAACATAATCCGG+AGG + Chr2:74412897-74412916 None:intergenic 45.0%
GCAGAAAGAGGATGTTAAGG+AGG - Chr2:74413168-74413187 MsG0280010753.01.T01:CDS 45.0%
GCCGAATAATATCATGGCGT+TGG - Chr2:74412801-74412820 MsG0280010753.01.T01:intron 45.0%
GCTCATCTTGTGTTGAGGAT+TGG - Chr2:74413573-74413592 MsG0280010753.01.T01:CDS 45.0%
GCTGCATGCTATATGCAGAT+GGG - Chr2:74412624-74412643 MsG0280010753.01.T01:CDS 45.0%
GGGGAAATGGCATATGTCTA+GGG - Chr2:74413787-74413806 MsG0280010753.01.T01:intron 45.0%
GTTACAAGTGAAGAAGGGCA+AGG - Chr2:74413705-74413724 MsG0280010753.01.T01:CDS 45.0%
TACCTCCTGCCATGTCAAAT+AGG + Chr2:74413731-74413750 None:intergenic 45.0%
TACGAAGGCTTTCTTGCTCT+TGG - Chr2:74413955-74413974 MsG0280010753.01.T01:intron 45.0%
TCAAATTAGGGCTACCCGTA+TGG - Chr2:74414279-74414298 MsG0280010753.01.T01:CDS 45.0%
TCAGATGAAAACTGCTGAGC+TGG - Chr2:74414187-74414206 MsG0280010753.01.T01:CDS 45.0%
TGCTATATGCAGATGGGACT+TGG - Chr2:74412630-74412649 MsG0280010753.01.T01:CDS 45.0%
TGGGATGAAGCTCTATTCAG+AGG - Chr2:74413668-74413687 MsG0280010753.01.T01:CDS 45.0%
TGGGGAAATGGCATATGTCT+AGG - Chr2:74413786-74413805 MsG0280010753.01.T01:intron 45.0%
TTCAGAGGCTGTTGAAGAGA+CGG - Chr2:74413683-74413702 MsG0280010753.01.T01:CDS 45.0%
TTCAGCACACAACCGTTCTT+AGG + Chr2:74413536-74413555 None:intergenic 45.0%
TTCCTTCAATTCTTGAGCCG+TGG + Chr2:74412489-74412508 None:intergenic 45.0%
TTCGAACAAGCGAAACTTCC+TGG - Chr2:74413988-74414007 MsG0280010753.01.T01:intron 45.0%
! AATGGCATATGTCTAGGGCA+AGG - Chr2:74413792-74413811 MsG0280010753.01.T01:intron 45.0%
!! AAGCTTTGTTGAAGAGAGCG+AGG - Chr2:74412714-74412733 MsG0280010753.01.T01:CDS 45.0%
!! GAATTGAAGTGGGCTGAAAC+AGG - Chr2:74413403-74413422 MsG0280010753.01.T01:intron 45.0%
!! TGATCGTCCTCAGCCTTATT+TGG + Chr2:74413088-74413107 None:intergenic 45.0%
ACAAGAACTGCTCCTAGGCT+TGG + Chr2:74413334-74413353 None:intergenic 50.0%
AGGGCAAGGCCTATTTGACA+TGG - Chr2:74413719-74413738 MsG0280010753.01.T01:CDS 50.0%
ATAACCCATCCAACCCGTAG+TGG + Chr2:74414153-74414172 None:intergenic 50.0%
ATCTTCGAGGAGCGATGGTA+AGG - Chr2:74412537-74412556 MsG0280010753.01.T01:CDS 50.0%
CAAGAACTGCTCCTAGGCTT+GGG + Chr2:74413333-74413352 None:intergenic 50.0%
CAAGGCCTATTTGACATGGC+AGG - Chr2:74413723-74413742 MsG0280010753.01.T01:CDS 50.0%
CTCAGTGAAACCTCCACTAC+GGG - Chr2:74414137-74414156 MsG0280010753.01.T01:intron 50.0%
GATGAAAACTGCTGAGCTGG+CGG - Chr2:74414190-74414209 MsG0280010753.01.T01:CDS 50.0%
GCTCAGTGAAACCTCCACTA+CGG - Chr2:74414136-74414155 MsG0280010753.01.T01:intron 50.0%
GGCTGCATGCTATATGCAGA+TGG - Chr2:74412623-74412642 MsG0280010753.01.T01:CDS 50.0%
GTGTCGTATGTGCGGAGTAA+TGG - Chr2:74412602-74412621 MsG0280010753.01.T01:CDS 50.0%
TGCCACGGCTCAAGAATTGA+AGG - Chr2:74412484-74412503 MsG0280010753.01.T01:CDS 50.0%
TGGGCTGAAACAGGATCACA+GGG - Chr2:74413412-74413431 MsG0280010753.01.T01:intron 50.0%
TTCTTGCTCTTGGTCAGCAG+CGG - Chr2:74413965-74413984 MsG0280010753.01.T01:intron 50.0%
TTTGTGAGGTTCCCAAGCCT+AGG - Chr2:74413319-74413338 MsG0280010753.01.T01:intron 50.0%
! GAAGAGAGCGAGGTGTTATG+AGG - Chr2:74412724-74412743 MsG0280010753.01.T01:CDS 50.0%
! GGCGTTGGAGATCTCAGATA+AGG - Chr2:74412816-74412835 MsG0280010753.01.T01:intron 50.0%
GGCCTATTTGACATGGCAGG+AGG - Chr2:74413726-74413745 MsG0280010753.01.T01:CDS 55.0%
GTGAAACCTCCACTACGGGT+TGG - Chr2:74414141-74414160 MsG0280010753.01.T01:intron 55.0%
! GTGGGCTGAAACAGGATCAC+AGG - Chr2:74413411-74413430 MsG0280010753.01.T01:intron 55.0%
!! AACCTCCACTACGGGTTGGA+TGG - Chr2:74414145-74414164 MsG0280010753.01.T01:intron 55.0%
!! ACCTCCACTACGGGTTGGAT+GGG - Chr2:74414146-74414165 MsG0280010753.01.T01:intron 55.0%
!! GGGACTTGGTGAGTACCCTA+GGG - Chr2:74412644-74412663 MsG0280010753.01.T01:CDS 55.0%
!! TGGGACTTGGTGAGTACCCT+AGG - Chr2:74412643-74412662 MsG0280010753.01.T01:CDS 55.0%
ACCCATCCAACCCGTAGTGG+AGG + Chr2:74414150-74414169 None:intergenic 60.0%
CTGAGCTGGCGGCAAACATG+AGG - Chr2:74414201-74414220 MsG0280010753.01.T01:CDS 60.0%
GAGGGATCTTCGAGGAGCGA+TGG - Chr2:74412532-74412551 MsG0280010753.01.T01:CDS 60.0%
TACGACATGGCCCTCCACAG+AGG - Chr2:74414039-74414058 MsG0280010753.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 74412374 74414364 74412374 ID=MsG0280010753.01;Name=MsG0280010753.01
Chr2 mRNA 74412374 74414364 74412374 ID=MsG0280010753.01.T01;Parent=MsG0280010753.01;Name=MsG0280010753.01.T01;_AED=0.20;_eAED=0.25;_QI=0|0|0|1|1|1|7|0|446
Chr2 exon 74414185 74414364 74414185 ID=MsG0280010753.01.T01:exon:46682;Parent=MsG0280010753.01.T01
Chr2 exon 74414028 74414096 74414028 ID=MsG0280010753.01.T01:exon:46681;Parent=MsG0280010753.01.T01
Chr2 exon 74413875 74413942 74413875 ID=MsG0280010753.01.T01:exon:46680;Parent=MsG0280010753.01.T01
Chr2 exon 74413483 74413804 74413483 ID=MsG0280010753.01.T01:exon:46679;Parent=MsG0280010753.01.T01
Chr2 exon 74413105 74413313 74413105 ID=MsG0280010753.01.T01:exon:46678;Parent=MsG0280010753.01.T01
Chr2 exon 74412860 74412969 74412860 ID=MsG0280010753.01.T01:exon:46677;Parent=MsG0280010753.01.T01
Chr2 exon 74412374 74412756 74412374 ID=MsG0280010753.01.T01:exon:46676;Parent=MsG0280010753.01.T01
Chr2 CDS 74414185 74414364 74414185 ID=MsG0280010753.01.T01:cds;Parent=MsG0280010753.01.T01
Chr2 CDS 74414028 74414096 74414028 ID=MsG0280010753.01.T01:cds;Parent=MsG0280010753.01.T01
Chr2 CDS 74413875 74413942 74413875 ID=MsG0280010753.01.T01:cds;Parent=MsG0280010753.01.T01
Chr2 CDS 74413483 74413804 74413483 ID=MsG0280010753.01.T01:cds;Parent=MsG0280010753.01.T01
Chr2 CDS 74413105 74413313 74413105 ID=MsG0280010753.01.T01:cds;Parent=MsG0280010753.01.T01
Chr2 CDS 74412860 74412969 74412860 ID=MsG0280010753.01.T01:cds;Parent=MsG0280010753.01.T01
Chr2 CDS 74412374 74412756 74412374 ID=MsG0280010753.01.T01:cds;Parent=MsG0280010753.01.T01
Gene Sequence

>MsG0280010753.01.T01

ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAACAAGTGAAGAAAATGGGAATCATAGTAACGACGGTGATAAAAGTCCGAATGCGTATGATAATGATACTTTGTTGTTTATTGCCACGGCTCAAGAATTGAAGGAAGAAGGTAATAAGATGTTTCAAAAGAGGGATCTTCGAGGAGCGATGATGGGACTTGGTGAGTACCCTAGGGCGATTAATGAATGCAATTTGGCTCTTGAAGTTACTCCTAAAACGATGGAGCCGAATAATATCATGGCGTTGGAGATCTCAGATAAGGTGAAAAGTGCACTTGAAGATAGAGGAAAAGGCAAAAGAAAAGAAACAGAAGAAAAAGAGCAAAAAAGAGAAGGTGAAAGCTTCGATGAAATTGTAGAGAAGCAAGCTGAGGAGAAACTAGAAGAGAAACATGCTGAGGAGAAACTAGAAGAGAAGAAAGAGGAGGACAACATTGCACCAAATAAGGCTGAGGACGATCATCTCAAAGAGAAAAAGCGTAATAAATCGAAAAAGAAGGCAGCCAAGGAAAAAATTGATAAGCAGAAAGAGGATGTTAAGGAGGTCAATGAAGAAAAAAGTAATGGTAGAAGCGTAGATGTACCTAAGAAAACAGCAAAACTTGTTTTGGATCACAGGGTCTATCCGACTGTATATAGTAGAAGCTATCCTAATCACGATCCGTTCTATGAGAAACTTCGTCTGAATGATGTGGAAAAGGTTGAAATGGATAATGCTCCTAAGAACGGTTGTGTGCTGAAATCAAAGGAAATTGTTAGCTCATCTTGTGTTGAGGATTGGATAATTCAGTTCGCACAACTGTTCAAAAATCACGTTGGCTCTAGCATTGTTCAATTGGGGAAATGGCATATGTCTAGGGCAAGGAAGAAAGTGTATTTAACCGAAGAAGATTCTTCTAAAGAACATATGTATGAGCAATTAAAAGTTCCAGCGGTTCGAACAAGCGAAACTTCCTGGTATTATGCACTCAGTAGTAATATAGATTTACGACATGGCCCTCCACAGAGGTTCTTCATCTTTACAACAATGCTGAGGAGAATGGAAAAAGGAATGCTGATATGGGAAGAATCACAAGAGCAGCAGCTCAGTGAAACCTCCACTACGGGTTGGATGGGTTATTTGAAAATATGTCATCAGATGAAAACTGCTGAGCTGGCGGCAAACATGAGGTCACAGATAAATCTCTTGTGGGGTACTATGCTGTATGAACGCTCACTTGTCGAATTCAAATTAGGGCTACCCGTATGGCATGAATCATTGGAAGCTGCATTGAGAAGTTTGAACATGCAGGAGCTTCTCCAACAGATGTAG

Protein sequence

>MsG0280010753.01.T01

MGKKKKQVGETSEENGNHSNDGDKSPNAYDNDTLLFIATAQELKEEGNKMFQKRDLRGAMMGLGEYPRAINECNLALEVTPKTMEPNNIMALEISDKVKSALEDRGKGKRKETEEKEQKREGESFDEIVEKQAEEKLEEKHAEEKLEEKKEEDNIAPNKAEDDHLKEKKRNKSKKKAAKEKIDKQKEDVKEVNEEKSNGRSVDVPKKTAKLVLDHRVYPTVYSRSYPNHDPFYEKLRLNDVEKVEMDNAPKNGCVLKSKEIVSSSCVEDWIIQFAQLFKNHVGSSIVQLGKWHMSRARKKVYLTEEDSSKEHMYEQLKVPAVRTSETSWYYALSSNIDLRHGPPQRFFIFTTMLRRMEKGMLIWEESQEQQLSETSTTGWMGYLKICHQMKTAELAANMRSQINLLWGTMLYERSLVEFKLGLPVWHESLEAALRSLNMQELLQQM*