Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017433.01.T01 | XP_003603418.1 | 94.211 | 190 | 9 | 1 | 1 | 188 | 1 | 190 | 3.56E-123 | 364 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017433.01.T01 | Q9SUV1 | 51.546 | 194 | 76 | 4 | 1 | 188 | 1 | 182 | 7.46E-51 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000218.01 | MsG0380017433.01 | -0.818409 | 1.990024e-52 | 1.488556e-49 |
| MsG0180000355.01 | MsG0380017433.01 | 0.825184 | 5.382825e-54 | 4.871435e-51 |
| MsG0180001235.01 | MsG0380017433.01 | 0.806783 | 6.954553e-50 | 3.808244e-47 |
| MsG0180001311.01 | MsG0380017433.01 | 0.809598 | 1.748279e-50 | 1.030898e-47 |
| MsG0180002799.01 | MsG0380017433.01 | 0.822048 | 2.917401e-53 | 2.414698e-50 |
| MsG0180002901.01 | MsG0380017433.01 | 0.806920 | 6.508038e-50 | 3.576365e-47 |
| MsG0180002992.01 | MsG0380017433.01 | 0.805397 | 1.361549e-49 | 7.195662e-47 |
| MsG0180003353.01 | MsG0380017433.01 | 0.806200 | 9.230613e-50 | 4.980024e-47 |
| MsG0180003807.01 | MsG0380017433.01 | 0.805477 | 1.309818e-49 | 6.936605e-47 |
| MsG0180003821.01 | MsG0380017433.01 | 0.821266 | 4.424733e-53 | 3.582319e-50 |
| MsG0180003885.01 | MsG0380017433.01 | 0.837392 | 5.342118e-57 | 6.928817e-54 |
| MsG0180003922.01 | MsG0380017433.01 | 0.818111 | 2.324744e-52 | 1.724496e-49 |
| MsG0180003932.01 | MsG0380017433.01 | 0.829814 | 4.170924e-55 | 4.316645e-52 |
| MsG0180004062.01 | MsG0380017433.01 | 0.820790 | 5.695372e-53 | 4.550607e-50 |
| MsG0180004486.01 | MsG0380017433.01 | 0.802021 | 6.835611e-49 | 3.313019e-46 |
| MsG0180004493.01 | MsG0380017433.01 | 0.846576 | 1.991327e-59 | 3.442778e-56 |
| MsG0180004500.01 | MsG0380017433.01 | 0.820688 | 6.008844e-53 | 4.787326e-50 |
| MsG0180004605.01 | MsG0380017433.01 | -0.801524 | 8.646704e-49 | 4.138344e-46 |
| MsG0180005049.01 | MsG0380017433.01 | 0.823160 | 1.608449e-53 | 1.374099e-50 |
| MsG0180005153.01 | MsG0380017433.01 | 0.813859 | 2.067410e-51 | 1.365578e-48 |
| MsG0180005169.01 | MsG0380017433.01 | 0.802813 | 4.694087e-49 | 2.321646e-46 |
| MsG0180005787.01 | MsG0380017433.01 | 0.804446 | 2.152205e-49 | 1.109888e-46 |
| MsG0180006017.01 | MsG0380017433.01 | 0.819073 | 1.406737e-52 | 1.071591e-49 |
| MsG0180006096.01 | MsG0380017433.01 | 0.826405 | 2.761719e-54 | 2.587739e-51 |
| MsG0180006104.01 | MsG0380017433.01 | 0.812804 | 3.525777e-51 | 2.263250e-48 |
| MsG0180006225.01 | MsG0380017433.01 | 0.802777 | 4.776080e-49 | 2.359965e-46 |
| MsG0180006243.01 | MsG0380017433.01 | 0.820715 | 5.923864e-53 | 4.723330e-50 |
| MsG0280011027.01 | MsG0380017433.01 | 0.843065 | 1.762320e-58 | 2.724734e-55 |
| MsG0280011065.01 | MsG0380017433.01 | 0.824040 | 1.001159e-53 | 8.767289e-51 |
| MsG0280011333.01 | MsG0380017433.01 | 0.849513 | 3.081102e-60 | 5.854862e-57 |
| MsG0380011927.01 | MsG0380017433.01 | 0.811584 | 6.506617e-51 | 4.043155e-48 |
| MsG0380014778.01 | MsG0380017433.01 | 0.800868 | 1.177903e-48 | 5.544876e-46 |
| MsG0380015066.01 | MsG0380017433.01 | -0.812653 | 3.804839e-51 | 2.432870e-48 |
| MsG0380015118.01 | MsG0380017433.01 | 0.815550 | 8.729648e-52 | 6.037154e-49 |
| MsG0380015220.01 | MsG0380017433.01 | 0.837151 | 6.157539e-57 | 7.928077e-54 |
| MsG0380016005.01 | MsG0380017433.01 | 0.823085 | 1.674197e-53 | 1.427358e-50 |
| MsG0380016387.01 | MsG0380017433.01 | 0.801123 | 1.044367e-48 | 4.948253e-46 |
| MsG0380016505.01 | MsG0380017433.01 | 0.842699 | 2.204171e-58 | 3.369255e-55 |
| MsG0380016671.01 | MsG0380017433.01 | 0.817148 | 3.831841e-52 | 2.768475e-49 |
| MsG0380017244.01 | MsG0380017433.01 | 0.804332 | 2.272508e-49 | 1.168518e-46 |
| MsG0380017433.01 | MsG0380017797.01 | 0.802391 | 5.737796e-49 | 2.807394e-46 |
| MsG0380017433.01 | MsG0380018033.01 | 0.815565 | 8.659934e-52 | 5.991599e-49 |
| MsG0380017433.01 | MsG0480018278.01 | 0.814132 | 1.800521e-51 | 1.198128e-48 |
| MsG0380017433.01 | MsG0480018292.01 | 0.822971 | 1.779837e-53 | 1.512470e-50 |
| MsG0380017433.01 | MsG0480018911.01 | 0.841633 | 4.222305e-58 | 6.241970e-55 |
| MsG0380017433.01 | MsG0480019007.01 | 0.820089 | 8.245070e-53 | 6.461913e-50 |
| MsG0380017433.01 | MsG0480019984.01 | -0.808810 | 2.579238e-50 | 1.489118e-47 |
| MsG0380017433.01 | MsG0480020024.01 | 0.811754 | 5.977742e-51 | 3.731235e-48 |
| MsG0380017433.01 | MsG0480021037.01 | 0.810002 | 1.431556e-50 | 8.531482e-48 |
| MsG0380017433.01 | MsG0480021492.01 | 0.826065 | 3.327742e-54 | 3.087773e-51 |
| MsG0380017433.01 | MsG0480021768.01 | 0.813901 | 2.024007e-51 | 1.338484e-48 |
| MsG0380017433.01 | MsG0480022514.01 | 0.840538 | 8.187238e-58 | 1.169822e-54 |
| MsG0380017433.01 | MsG0480022586.01 | 0.831919 | 1.270492e-55 | 1.398641e-52 |
| MsG0380017433.01 | MsG0480022672.01 | 0.838167 | 3.376486e-57 | 4.484974e-54 |
| MsG0380017433.01 | MsG0480022780.01 | 0.818459 | 1.938393e-52 | 1.451959e-49 |
| MsG0380017433.01 | MsG0480022891.01 | 0.826732 | 2.308212e-54 | 2.182887e-51 |
| MsG0380017433.01 | MsG0480023172.01 | 0.833379 | 5.517766e-56 | 6.343417e-53 |
| MsG0380017433.01 | MsG0480023384.01 | 0.852480 | 4.491822e-61 | 9.397971e-58 |
| MsG0380017433.01 | MsG0480023387.01 | 0.841074 | 5.921843e-58 | 8.602003e-55 |
| MsG0380017433.01 | MsG0480023400.01 | -0.821098 | 4.836147e-53 | 3.897641e-50 |
| MsG0380017433.01 | MsG0580024619.01 | 0.800613 | 1.327639e-48 | 6.209345e-46 |
| MsG0380017433.01 | MsG0580025131.01 | 0.820153 | 7.972061e-53 | 6.258612e-50 |
| MsG0380017433.01 | MsG0580025268.01 | 0.804867 | 1.757722e-49 | 9.164631e-47 |
| MsG0380017433.01 | MsG0580025458.01 | 0.805660 | 1.199229e-49 | 6.380914e-47 |
| MsG0380017433.01 | MsG0580025661.01 | 0.803385 | 3.574994e-49 | 1.794046e-46 |
| MsG0380017433.01 | MsG0580029231.01 | 0.828363 | 9.371722e-55 | 9.294687e-52 |
| MsG0380017433.01 | MsG0580029236.01 | 0.808292 | 3.327172e-50 | 1.895151e-47 |
| MsG0380017433.01 | MsG0580029550.01 | 0.823418 | 1.399741e-53 | 1.204461e-50 |
| MsG0380017433.01 | MsG0580029736.01 | 0.815799 | 7.683841e-52 | 5.350504e-49 |
| MsG0380017433.01 | MsG0580029919.01 | 0.838850 | 2.250501e-57 | 3.052395e-54 |
| MsG0380017433.01 | MsG0580030142.01 | 0.801500 | 8.745957e-49 | 4.183357e-46 |
| MsG0380017433.01 | MsG0680030350.01 | 0.825523 | 4.475403e-54 | 4.088999e-51 |
| MsG0380017433.01 | MsG0680030515.01 | 0.816079 | 6.652924e-52 | 4.668267e-49 |
| MsG0380017433.01 | MsG0680031000.01 | 0.805365 | 1.383026e-49 | 7.303182e-47 |
| MsG0380017433.01 | MsG0680033926.01 | 0.800792 | 1.220639e-48 | 5.734671e-46 |
| MsG0380017433.01 | MsG0680034235.01 | 0.841111 | 5.792434e-58 | 8.424104e-55 |
| MsG0380017433.01 | MsG0680035877.01 | 0.806618 | 7.535589e-50 | 4.108849e-47 |
| MsG0380017433.01 | MsG0680035888.01 | 0.809416 | 1.912990e-50 | 1.122556e-47 |
| MsG0380017433.01 | MsG0780035937.01 | 0.826610 | 2.468494e-54 | 2.326282e-51 |
| MsG0380017433.01 | MsG0780036659.01 | 0.810508 | 1.113073e-50 | 6.721904e-48 |
| MsG0380017433.01 | MsG0780037093.01 | 0.835775 | 1.378796e-56 | 1.703152e-53 |
| MsG0380017433.01 | MsG0780038892.01 | 0.820140 | 8.028946e-53 | 6.301182e-50 |
| MsG0380017433.01 | MsG0780039155.01 | 0.830090 | 3.571594e-55 | 3.725030e-52 |
| MsG0380017433.01 | MsG0780039369.01 | 0.835589 | 1.536784e-56 | 1.887701e-53 |
| MsG0380017433.01 | MsG0780039439.01 | 0.809145 | 2.186650e-50 | 1.273879e-47 |
| MsG0380017433.01 | MsG0780040569.01 | 0.808831 | 2.552187e-50 | 1.474327e-47 |
| MsG0380017433.01 | MsG0780041268.01 | 0.807258 | 5.518154e-50 | 3.059225e-47 |
| MsG0380017433.01 | MsG0780041387.01 | 0.802571 | 5.265674e-49 | 2.588097e-46 |
| MsG0380017433.01 | MsG0780041435.01 | 0.805247 | 1.463908e-49 | 7.706670e-47 |
| MsG0380017433.01 | MsG0780041482.01 | 0.823181 | 1.590078e-53 | 1.359233e-50 |
| MsG0380017433.01 | MsG0780041634.01 | 0.817263 | 3.611023e-52 | 2.617010e-49 |
| MsG0380017433.01 | MsG0780041699.01 | 0.812228 | 4.710900e-51 | 2.978531e-48 |
| MsG0380017433.01 | MsG0780041734.01 | -0.810002 | 1.431556e-50 | 8.531482e-48 |
| MsG0380017433.01 | MsG0880042033.01 | 0.811015 | 8.645854e-51 | 5.293046e-48 |
| MsG0380017433.01 | MsG0880042324.01 | 0.816674 | 4.896948e-52 | 3.492308e-49 |
| MsG0380017433.01 | MsG0880042348.01 | 0.826140 | 3.194011e-54 | 2.970139e-51 |
| MsG0380017433.01 | MsG0880042399.01 | -0.815138 | 1.077901e-51 | 7.370222e-49 |
| MsG0380017433.01 | MsG0880042795.01 | 0.824843 | 6.479162e-54 | 5.806585e-51 |
| MsG0380017433.01 | MsG0880043128.01 | 0.818383 | 2.016739e-52 | 1.507461e-49 |
| MsG0380017433.01 | MsG0880044005.01 | 0.814867 | 1.238028e-51 | 8.403365e-49 |
| MsG0380017433.01 | MsG0880044131.01 | 0.809933 | 1.481367e-50 | 8.812178e-48 |
| MsG0380017433.01 | MsG0880045294.01 | 0.800443 | 1.437925e-48 | 6.696260e-46 |
| MsG0380017433.01 | MsG0880045329.01 | 0.820371 | 7.104725e-53 | 5.611449e-50 |
| MsG0380017433.01 | MsG0880045460.01 | 0.800074 | 1.709590e-48 | 7.887001e-46 |
| MsG0380017433.01 | MsG0880045480.01 | -0.804452 | 2.145709e-49 | 1.106711e-46 |
| MsG0380017433.01 | MsG0880045684.01 | 0.804234 | 2.382128e-49 | 1.221748e-46 |
| MsG0380017433.01 | MsG0880045716.01 | 0.815326 | 9.792130e-52 | 6.730340e-49 |
| MsG0380017433.01 | MsG0880046517.01 | 0.835367 | 1.748266e-56 | 2.133503e-53 |
| MsG0380017433.01 | MsG0880046901.01 | 0.832259 | 1.046678e-55 | 1.163572e-52 |
| MsG0380017433.01 | MsG0880047212.01 | 0.804612 | 1.986815e-49 | 1.029014e-46 |
| MsG0380017433.01 | MsG0880047696.01 | 0.830874 | 2.297014e-55 | 2.451311e-52 |
| MsG0380017433.01 | MsG0880047703.01 | 0.816216 | 6.198796e-52 | 4.366037e-49 |
| MsG0280006545.01 | MsG0380017433.01 | 0.801023 | 1.094787e-48 | 5.174221e-46 |
| MsG0280006852.01 | MsG0380017433.01 | 0.805584 | 1.243808e-49 | 6.605240e-47 |
| MsG0280007165.01 | MsG0380017433.01 | -0.816271 | 6.026251e-52 | 4.250818e-49 |
| MsG0280007531.01 | MsG0380017433.01 | 0.808533 | 2.956348e-50 | 1.694553e-47 |
| MsG0280007903.01 | MsG0380017433.01 | 0.846348 | 2.297933e-59 | 3.943691e-56 |
| MsG0280008738.01 | MsG0380017433.01 | 0.833390 | 5.481973e-56 | 6.304262e-53 |
| MsG0280008765.01 | MsG0380017433.01 | 0.819725 | 9.986963e-53 | 7.747269e-50 |
| MsG0280009270.01 | MsG0380017433.01 | 0.812259 | 4.638551e-51 | 2.935205e-48 |
| MsG0280010411.01 | MsG0380017433.01 | 0.809597 | 1.748918e-50 | 1.031244e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017433.01.T01 | MTR_3g107510 | 94.211 | 190 | 9 | 1 | 1 | 188 | 1 | 190 | 4.31e-127 | 364 |
| MsG0380017433.01.T01 | MTR_1g012030 | 59.113 | 203 | 67 | 4 | 2 | 188 | 5 | 207 | 1.00e-61 | 197 |
| MsG0380017433.01.T01 | MTR_4g114320 | 53.107 | 177 | 65 | 6 | 25 | 188 | 21 | 192 | 2.96e-46 | 157 |
| MsG0380017433.01.T01 | MTR_4g005330 | 45.070 | 71 | 39 | 0 | 117 | 187 | 63 | 133 | 6.30e-17 | 78.2 |
| MsG0380017433.01.T01 | MTR_4g005330 | 46.970 | 66 | 35 | 0 | 122 | 187 | 2 | 67 | 3.07e-16 | 75.5 |
| MsG0380017433.01.T01 | MTR_3g074490 | 38.356 | 73 | 45 | 0 | 114 | 186 | 110 | 182 | 1.53e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017433.01.T01 | AT4G32400 | 51.546 | 194 | 76 | 4 | 1 | 188 | 1 | 182 | 7.61e-52 | 171 |
| MsG0380017433.01.T01 | AT3G20240 | 45.070 | 71 | 39 | 0 | 118 | 188 | 50 | 120 | 5.08e-16 | 75.5 |
Find 57 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCACTAAAAGGAAATTT+AGG | 0.125546 | 3:-96216477 | None:intergenic |
| GATTCTAATTCCCCTGAAAA+TGG | 0.247936 | 3:+96216447 | MsG0380017433.01.T01:CDS |
| TTAACGTATAATTCACTAAA+AGG | 0.290618 | 3:-96216486 | None:intergenic |
| TGGATGGAAGGGTTTGTTTA+GGG | 0.298083 | 3:+96216779 | MsG0380017433.01.T01:CDS |
| ATTCACTAAAAGGAAATTTA+GGG | 0.305139 | 3:-96216476 | None:intergenic |
| TGGCACCTTTGGAGACTATT+AGG | 0.317047 | 3:+96216688 | MsG0380017433.01.T01:CDS |
| ATGGATGGAAGGGTTTGTTT+AGG | 0.338034 | 3:+96216778 | MsG0380017433.01.T01:CDS |
| TAAGGAATCCTTCTATTAGA+AGG | 0.342750 | 3:+96216622 | MsG0380017433.01.T01:CDS |
| TAGAACCACTGTGGCACCTT+TGG | 0.351090 | 3:+96216677 | MsG0380017433.01.T01:CDS |
| GAAATCTTGTTAATGTCATT+CGG | 0.353717 | 3:+96216802 | MsG0380017433.01.T01:CDS |
| TTTGAGCCTAATGGTGTTAC+GGG | 0.368589 | 3:+96216531 | MsG0380017433.01.T01:CDS |
| AGTGTTGGTCAAGTGGGAAT+AGG | 0.372936 | 3:+96216396 | MsG0380017433.01.T01:CDS |
| AAATCTTGTTAATGTCATTC+GGG | 0.378614 | 3:+96216803 | MsG0380017433.01.T01:CDS |
| CTCTGGAAATTTGAGCCTAA+TGG | 0.383482 | 3:+96216522 | MsG0380017433.01.T01:CDS |
| GTGTTGGTCAAGTGGGAATA+GGG | 0.395032 | 3:+96216397 | MsG0380017433.01.T01:CDS |
| GGTCAAGTGGGAATAGGGTT+TGG | 0.403207 | 3:+96216402 | MsG0380017433.01.T01:CDS |
| GACTATTAGGACTCATTTGA+TGG | 0.419164 | 3:+96216701 | MsG0380017433.01.T01:CDS |
| CTACACAACCTTCTAATAGA+AGG | 0.424911 | 3:-96216630 | None:intergenic |
| GAATCAGAAGGGTTTGGTTG+TGG | 0.427235 | 3:-96216429 | None:intergenic |
| GAATTAGAATCAGAAGGGTT+TGG | 0.431685 | 3:-96216435 | None:intergenic |
| ATTTGAGCCTAATGGTGTTA+CGG | 0.440900 | 3:+96216530 | MsG0380017433.01.T01:CDS |
| CCTAATGGTGTTACGGGCAA+GGG | 0.453681 | 3:+96216537 | MsG0380017433.01.T01:CDS |
| GGTGGTTTGTTTGCTAGTGT+TGG | 0.463456 | 3:+96216381 | MsG0380017433.01.T01:CDS |
| CTCTTTGATGACAAAAGAGA+TGG | 0.481584 | 3:+96216309 | MsG0380017433.01.T01:CDS |
| TTGTGTAGTGGAGCAATTGC+TGG | 0.481763 | 3:+96216645 | MsG0380017433.01.T01:CDS |
| CAGGATATTATGAAAACTGA+TGG | 0.484050 | 3:+96216759 | MsG0380017433.01.T01:CDS |
| GCCTAATGGTGTTACGGGCA+AGG | 0.486297 | 3:+96216536 | MsG0380017433.01.T01:CDS |
| CATGAGGATTACTATTATCC+TGG | 0.492331 | 3:+96216360 | MsG0380017433.01.T01:CDS |
| GGAAGGTGAACAAGTTGTTA+AGG | 0.501044 | 3:+96216560 | MsG0380017433.01.T01:CDS |
| CCCTTGCCCGTAACACCATT+AGG | 0.507798 | 3:-96216537 | None:intergenic |
| GGATGGAAGGGTTTGTTTAG+GGG | 0.528599 | 3:+96216780 | MsG0380017433.01.T01:CDS |
| ATGAAAACTGATGGATGGAA+GGG | 0.528727 | 3:+96216768 | MsG0380017433.01.T01:CDS |
| TTAAGCTCAAGATTAAGATA+AGG | 0.531801 | 3:+96216604 | MsG0380017433.01.T01:CDS |
| TATGAAAACTGATGGATGGA+AGG | 0.533911 | 3:+96216767 | MsG0380017433.01.T01:CDS |
| TCAGGGGAATTAGAATCAGA+AGG | 0.536789 | 3:-96216441 | None:intergenic |
| TGCGCCTAGCAAGGCTATTG+AGG | 0.550247 | 3:+96216827 | MsG0380017433.01.T01:CDS |
| GTTTGCTAGTGTTGGTCAAG+TGG | 0.552428 | 3:+96216389 | MsG0380017433.01.T01:CDS |
| TTTGCTAGTGTTGGTCAAGT+GGG | 0.555292 | 3:+96216390 | MsG0380017433.01.T01:CDS |
| CATTCGGGTTGCGCCTAGCA+AGG | 0.557121 | 3:+96216818 | MsG0380017433.01.T01:CDS |
| TTAAGTATATTCAATCACTC+TGG | 0.561876 | 3:+96216505 | MsG0380017433.01.T01:CDS |
| CATTTGATGGTGGGAAGTAG+TGG | 0.562649 | 3:+96216714 | MsG0380017433.01.T01:CDS |
| ATTAGGACTCATTTGATGGT+GGG | 0.563542 | 3:+96216705 | MsG0380017433.01.T01:CDS |
| CAGGGGAATTAGAATCAGAA+GGG | 0.563815 | 3:-96216440 | None:intergenic |
| ATTACCTCAATAGCCTTGCT+AGG | 0.568427 | 3:-96216831 | None:intergenic |
| TATTAGGACTCATTTGATGG+TGG | 0.584361 | 3:+96216704 | MsG0380017433.01.T01:CDS |
| TCTATTAGAAGGTTGTGTAG+TGG | 0.586868 | 3:+96216633 | MsG0380017433.01.T01:CDS |
| TCTTTGATGACAAAAGAGAT+GGG | 0.588905 | 3:+96216310 | MsG0380017433.01.T01:CDS |
| CTAATGGTGTTACGGGCAAG+GGG | 0.590038 | 3:+96216538 | MsG0380017433.01.T01:CDS |
| TTCAAATTTAGGGTCTCATG+AGG | 0.600906 | 3:+96216344 | MsG0380017433.01.T01:CDS |
| ATATTATGAAAACTGATGGA+TGG | 0.609112 | 3:+96216763 | MsG0380017433.01.T01:CDS |
| GAGGATTACTATTATCCTGG+TGG | 0.610245 | 3:+96216363 | MsG0380017433.01.T01:CDS |
| TGAGTCCTAATAGTCTCCAA+AGG | 0.641578 | 3:-96216693 | None:intergenic |
| ACACTAGCAAACAAACCACC+AGG | 0.654663 | 3:-96216378 | None:intergenic |
| TAATGGTGTTACGGGCAAGG+GGG | 0.685871 | 3:+96216539 | MsG0380017433.01.T01:CDS |
| AGTCTCCAAAGGTGCCACAG+TGG | 0.705525 | 3:-96216682 | None:intergenic |
| AATATCCTGGAAAACATCAG+CGG | 0.708839 | 3:-96216745 | None:intergenic |
| TGCAATTTCTAGAACCACTG+TGG | 0.742671 | 3:+96216668 | MsG0380017433.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCACTAAAAGGAAATTT+AGG | - | Chr3:96216480-96216499 | None:intergenic | 20.0% |
| !! | ATTCACTAAAAGGAAATTTA+GGG | - | Chr3:96216479-96216498 | None:intergenic | 20.0% |
| !! | TTAACGTATAATTCACTAAA+AGG | - | Chr3:96216489-96216508 | None:intergenic | 20.0% |
| !!! | TTTTCTCTGTTTCAAATTTA+GGG | + | Chr3:96216334-96216353 | MsG0380017433.01.T01:CDS | 20.0% |
| !!! | TTTTTCTCTGTTTCAAATTT+AGG | + | Chr3:96216333-96216352 | MsG0380017433.01.T01:CDS | 20.0% |
| ! | AAATCTTGTTAATGTCATTC+GGG | + | Chr3:96216803-96216822 | MsG0380017433.01.T01:CDS | 25.0% |
| ! | ATATTATGAAAACTGATGGA+TGG | + | Chr3:96216763-96216782 | MsG0380017433.01.T01:CDS | 25.0% |
| ! | GAAATCTTGTTAATGTCATT+CGG | + | Chr3:96216802-96216821 | MsG0380017433.01.T01:CDS | 25.0% |
| ! | GTTAAGGTGAAGAATAAAAA+TGG | + | Chr3:96216576-96216595 | MsG0380017433.01.T01:CDS | 25.0% |
| ! | TTAAGCTCAAGATTAAGATA+AGG | + | Chr3:96216604-96216623 | MsG0380017433.01.T01:CDS | 25.0% |
| ! | TTAAGTATATTCAATCACTC+TGG | + | Chr3:96216505-96216524 | MsG0380017433.01.T01:CDS | 25.0% |
| AAGGTGAAGAATAAAAATGG+TGG | + | Chr3:96216579-96216598 | MsG0380017433.01.T01:CDS | 30.0% | |
| AGGTGAAGAATAAAAATGGT+GGG | + | Chr3:96216580-96216599 | MsG0380017433.01.T01:CDS | 30.0% | |
| CAGGATATTATGAAAACTGA+TGG | + | Chr3:96216759-96216778 | MsG0380017433.01.T01:CDS | 30.0% | |
| TAAGGAATCCTTCTATTAGA+AGG | + | Chr3:96216622-96216641 | MsG0380017433.01.T01:CDS | 30.0% | |
| ! | CATCAGTTTTCATAATATCC+TGG | - | Chr3:96216761-96216780 | None:intergenic | 30.0% |
| ! | TCTTTGATGACAAAAGAGAT+GGG | + | Chr3:96216310-96216329 | MsG0380017433.01.T01:CDS | 30.0% |
| AATATCCTGGAAAACATCAG+CGG | - | Chr3:96216748-96216767 | None:intergenic | 35.0% | |
| CATGAGGATTACTATTATCC+TGG | + | Chr3:96216360-96216379 | MsG0380017433.01.T01:CDS | 35.0% | |
| CTACACAACCTTCTAATAGA+AGG | - | Chr3:96216633-96216652 | None:intergenic | 35.0% | |
| GAATTAGAATCAGAAGGGTT+TGG | - | Chr3:96216438-96216457 | None:intergenic | 35.0% | |
| GACTATTAGGACTCATTTGA+TGG | + | Chr3:96216701-96216720 | MsG0380017433.01.T01:CDS | 35.0% | |
| GATTCTAATTCCCCTGAAAA+TGG | + | Chr3:96216447-96216466 | MsG0380017433.01.T01:CDS | 35.0% | |
| TATTAGGACTCATTTGATGG+TGG | + | Chr3:96216704-96216723 | MsG0380017433.01.T01:CDS | 35.0% | |
| TCTATTAGAAGGTTGTGTAG+TGG | + | Chr3:96216633-96216652 | MsG0380017433.01.T01:CDS | 35.0% | |
| ! | ATGAAAACTGATGGATGGAA+GGG | + | Chr3:96216768-96216787 | MsG0380017433.01.T01:CDS | 35.0% |
| ! | ATTAGGACTCATTTGATGGT+GGG | + | Chr3:96216705-96216724 | MsG0380017433.01.T01:CDS | 35.0% |
| ! | ATTTGAGCCTAATGGTGTTA+CGG | + | Chr3:96216530-96216549 | MsG0380017433.01.T01:CDS | 35.0% |
| ! | CTCTTTGATGACAAAAGAGA+TGG | + | Chr3:96216309-96216328 | MsG0380017433.01.T01:CDS | 35.0% |
| ! | CTCTTTTGTCATCAAAGAGT+TGG | - | Chr3:96216308-96216327 | None:intergenic | 35.0% |
| ! | TATGAAAACTGATGGATGGA+AGG | + | Chr3:96216767-96216786 | MsG0380017433.01.T01:CDS | 35.0% |
| ! | TTCAAATTTAGGGTCTCATG+AGG | + | Chr3:96216344-96216363 | MsG0380017433.01.T01:CDS | 35.0% |
| CAGGGGAATTAGAATCAGAA+GGG | - | Chr3:96216443-96216462 | None:intergenic | 40.0% | |
| GAGGATTACTATTATCCTGG+TGG | + | Chr3:96216363-96216382 | MsG0380017433.01.T01:CDS | 40.0% | |
| GGAAGGTGAACAAGTTGTTA+AGG | + | Chr3:96216560-96216579 | MsG0380017433.01.T01:CDS | 40.0% | |
| TCAGGGGAATTAGAATCAGA+AGG | - | Chr3:96216444-96216463 | None:intergenic | 40.0% | |
| TGAGTCCTAATAGTCTCCAA+AGG | - | Chr3:96216696-96216715 | None:intergenic | 40.0% | |
| ! | ATGGATGGAAGGGTTTGTTT+AGG | + | Chr3:96216778-96216797 | MsG0380017433.01.T01:CDS | 40.0% |
| ! | ATTACCTCAATAGCCTTGCT+AGG | - | Chr3:96216834-96216853 | None:intergenic | 40.0% |
| ! | CTCTGGAAATTTGAGCCTAA+TGG | + | Chr3:96216522-96216541 | MsG0380017433.01.T01:CDS | 40.0% |
| ! | TAGGGTCATCACCATTTTCA+GGG | - | Chr3:96216461-96216480 | None:intergenic | 40.0% |
| ! | TGGATGGAAGGGTTTGTTTA+GGG | + | Chr3:96216779-96216798 | MsG0380017433.01.T01:CDS | 40.0% |
| ! | TTAGGGTCATCACCATTTTC+AGG | - | Chr3:96216462-96216481 | None:intergenic | 40.0% |
| !! | TGCAATTTCTAGAACCACTG+TGG | + | Chr3:96216668-96216687 | MsG0380017433.01.T01:CDS | 40.0% |
| !! | TTTGAGCCTAATGGTGTTAC+GGG | + | Chr3:96216531-96216550 | MsG0380017433.01.T01:CDS | 40.0% |
| !! | TTTGCTAGTGTTGGTCAAGT+GGG | + | Chr3:96216390-96216409 | MsG0380017433.01.T01:CDS | 40.0% |
| ACACTAGCAAACAAACCACC+AGG | - | Chr3:96216381-96216400 | None:intergenic | 45.0% | |
| ! | AGGGTCATCACCATTTTCAG+GGG | - | Chr3:96216460-96216479 | None:intergenic | 45.0% |
| ! | GAATCAGAAGGGTTTGGTTG+TGG | - | Chr3:96216432-96216451 | None:intergenic | 45.0% |
| ! | GGATGGAAGGGTTTGTTTAG+GGG | + | Chr3:96216780-96216799 | MsG0380017433.01.T01:CDS | 45.0% |
| ! | GTGTTGGTCAAGTGGGAATA+GGG | + | Chr3:96216397-96216416 | MsG0380017433.01.T01:CDS | 45.0% |
| ! | TGGCACCTTTGGAGACTATT+AGG | + | Chr3:96216688-96216707 | MsG0380017433.01.T01:CDS | 45.0% |
| ! | TTCTACCGCTGATGTTTTCC+AGG | + | Chr3:96216740-96216759 | MsG0380017433.01.T01:CDS | 45.0% |
| ! | TTGTGTAGTGGAGCAATTGC+TGG | + | Chr3:96216645-96216664 | MsG0380017433.01.T01:CDS | 45.0% |
| !! | AGTGTTGGTCAAGTGGGAAT+AGG | + | Chr3:96216396-96216415 | MsG0380017433.01.T01:CDS | 45.0% |
| !! | CATTTGATGGTGGGAAGTAG+TGG | + | Chr3:96216714-96216733 | MsG0380017433.01.T01:CDS | 45.0% |
| !! | GGTGGTTTGTTTGCTAGTGT+TGG | + | Chr3:96216381-96216400 | MsG0380017433.01.T01:CDS | 45.0% |
| !! | GTTTGCTAGTGTTGGTCAAG+TGG | + | Chr3:96216389-96216408 | MsG0380017433.01.T01:CDS | 45.0% |
| GGTCAAGTGGGAATAGGGTT+TGG | + | Chr3:96216402-96216421 | MsG0380017433.01.T01:CDS | 50.0% | |
| TAGAACCACTGTGGCACCTT+TGG | + | Chr3:96216677-96216696 | MsG0380017433.01.T01:CDS | 50.0% | |
| !! | CCTAATGGTGTTACGGGCAA+GGG | + | Chr3:96216537-96216556 | MsG0380017433.01.T01:CDS | 50.0% |
| !! | CTAATGGTGTTACGGGCAAG+GGG | + | Chr3:96216538-96216557 | MsG0380017433.01.T01:CDS | 50.0% |
| !! | TAATGGTGTTACGGGCAAGG+GGG | + | Chr3:96216539-96216558 | MsG0380017433.01.T01:CDS | 50.0% |
| CCCTTGCCCGTAACACCATT+AGG | - | Chr3:96216540-96216559 | None:intergenic | 55.0% | |
| TGCGCCTAGCAAGGCTATTG+AGG | + | Chr3:96216827-96216846 | MsG0380017433.01.T01:CDS | 55.0% | |
| !! | AGTCTCCAAAGGTGCCACAG+TGG | - | Chr3:96216685-96216704 | None:intergenic | 55.0% |
| !! | GCCTAATGGTGTTACGGGCA+AGG | + | Chr3:96216536-96216555 | MsG0380017433.01.T01:CDS | 55.0% |
| !! | CATTCGGGTTGCGCCTAGCA+AGG | + | Chr3:96216818-96216837 | MsG0380017433.01.T01:CDS | 60.0% |
| ! | GGTGTTACGGGCAAGGGGGA+AGG | + | Chr3:96216543-96216562 | MsG0380017433.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 96216288 | 96216893 | 96216288 | ID=MsG0380017433.01;Name=MsG0380017433.01 |
| Chr3 | mRNA | 96216288 | 96216893 | 96216288 | ID=MsG0380017433.01.T01;Parent=MsG0380017433.01;Name=MsG0380017433.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|201 |
| Chr3 | exon | 96216288 | 96216893 | 96216288 | ID=MsG0380017433.01.T01:exon:17429;Parent=MsG0380017433.01.T01 |
| Chr3 | CDS | 96216288 | 96216893 | 96216288 | ID=MsG0380017433.01.T01:cds;Parent=MsG0380017433.01.T01 |
| Gene Sequence |
| Protein sequence |
