AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010158.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010158.01.T01 MTR_2g078660 75.510 196 16 2 90 253 111 306 7.48e-78 247
MsG0280010158.01.T01 MTR_2g078660 75.510 196 16 2 90 253 111 306 1.28e-77 247
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 76 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAAATTGATTACCTTAG+AGG 0.257708 2:+65407203 None:intergenic
GCTACTCATATCTCTAAGTT+TGG 0.257917 2:+65405699 None:intergenic
TATATACCTTTAGGTTAGTT+AGG 0.300695 2:+65407496 None:intergenic
TTGCAGGTCGATTACTCTAA+TGG 0.303423 2:-65407267 MsG0280010158.01.T01:exon
TCAGCCCTCAATTCCTCTTC+TGG 0.307736 2:+65405766 None:intergenic
TGCAGGTCGATTACTCTAAT+GGG 0.325276 2:-65407266 MsG0280010158.01.T01:exon
CGATTGGATTGGATTGGATT+GGG 0.325703 2:+65407417 None:intergenic
GATTGGATTGGATTGGGGTT+AGG 0.328139 2:+65407423 None:intergenic
GTGAAGAAGAAGAAGCGATT+AGG 0.328482 2:+65407336 None:intergenic
TGAAGAAGAAGAAGCGATTA+GGG 0.339416 2:+65407337 None:intergenic
ATCGATCTATATATACCTTT+AGG 0.342327 2:+65407487 None:intergenic
CAACGATGTGTCCATGCCTT+TGG 0.371538 2:+65406422 None:intergenic
GTGCAAAGAGTGGTAGATAT+AGG 0.372917 2:-65406045 MsG0280010158.01.T01:CDS
CTGGGACAGGGAATCTAAAA+AGG 0.379065 2:-65405663 MsG0280010158.01.T01:CDS
TGGGCTTAGAAGAGACATTC+AGG 0.383625 2:-65406164 MsG0280010158.01.T01:CDS
ACAGTGAATATGAGAGTTCC+AGG 0.383701 2:-65406120 MsG0280010158.01.T01:CDS
CCGATTGGATTGGATTGGAT+TGG 0.385220 2:+65407416 None:intergenic
GAAATCGCGTAGGAAGAAAA+AGG 0.387991 2:-65406221 MsG0280010158.01.T01:CDS
GATTACCTTAGAGGAATGTT+TGG 0.390546 2:+65407212 None:intergenic
ACACTCCAAACATTCCTCTA+AGG 0.401230 2:-65407217 MsG0280010158.01.T01:intron
CTGTCCCAGCACGAACTTCA+AGG 0.410061 2:+65405677 None:intergenic
TGCAAAGAGTGGTAGATATA+GGG 0.420865 2:-65406044 MsG0280010158.01.T01:CDS
CTACTCATATCTCTAAGTTT+GGG 0.422245 2:+65405700 None:intergenic
CTTGAAGTTCGTGCTGGGAC+AGG 0.423451 2:-65405676 MsG0280010158.01.T01:CDS
GAGAGAAGCAAGTGTTAGTT+CGG 0.437167 2:-65406194 MsG0280010158.01.T01:CDS
AGAACCCGATTGGATTGGAT+TGG 0.443933 2:+65407411 None:intergenic
GAAAGAGAACCCGATTGGAT+TGG 0.457344 2:+65407406 None:intergenic
AGGTATATATAGATCGATAT+TGG 0.457490 2:-65407482 MsG0280010158.01.T01:five_prime_UTR
CCAATCCAATCCAATCCAAT+CGG 0.473088 2:-65407416 MsG0280010158.01.T01:five_prime_UTR
TGATGAATGTACTTACGAAC+AGG 0.485911 2:-65405990 MsG0280010158.01.T01:CDS
GTTCGTAAGTACATTCATCA+TGG 0.496035 2:+65405993 None:intergenic
CAGTGTCCTAACTAACCTAA+AGG 0.500590 2:-65407502 None:intergenic
TTAGAAGAGACATTCAGGTT+GGG 0.502512 2:-65406159 MsG0280010158.01.T01:CDS
GTGTTAGTTCGGTGAGCAGT+GGG 0.510367 2:-65406183 MsG0280010158.01.T01:CDS
GAAAGACAAAAGAAGATCGA+GGG 0.511480 2:-65406080 MsG0280010158.01.T01:CDS
AGAAGATCGAGGGGAAGAAG+TGG 0.511869 2:-65406070 MsG0280010158.01.T01:CDS
TGCACCAGAAGAGGAATTGA+GGG 0.520146 2:-65405770 MsG0280010158.01.T01:CDS
AGTAGCCTTGAAGTTCGTGC+TGG 0.520350 2:-65405682 MsG0280010158.01.T01:CDS
TATTTGGTGGTTTAGACTAA+GGG 0.525292 2:-65406531 MsG0280010158.01.T01:intron
ATGCACCAGAAGAGGAATTG+AGG 0.526701 2:-65405771 MsG0280010158.01.T01:CDS
CTTAGAAGAGACATTCAGGT+TGG 0.526829 2:-65406160 MsG0280010158.01.T01:CDS
GCGAAGAAAGAGAACCCGAT+TGG 0.533855 2:+65407401 None:intergenic
TGTCCTCTAGTTCTGAAGAT+AGG 0.534094 2:-65406401 MsG0280010158.01.T01:CDS
TTCGTAAGTACATTCATCAT+GGG 0.537747 2:+65405994 None:intergenic
TAAGAAACATAAATCAAAGA+AGG 0.539580 2:-65406490 MsG0280010158.01.T01:CDS
TTACTGTCATTACTTCTACA+AGG 0.540510 2:+65405835 None:intergenic
AGAAGTGGAAGTGCAAAGAG+TGG 0.545278 2:-65406055 MsG0280010158.01.T01:CDS
TTGAAGTTCGTGCTGGGACA+GGG 0.553179 2:-65405675 MsG0280010158.01.T01:CDS
TTGAGGGCTGAGGATGTGAC+AGG 0.554815 2:-65405754 MsG0280010158.01.T01:CDS
TACACATGATGCACCAGAAG+AGG 0.555450 2:-65405779 MsG0280010158.01.T01:CDS
CAATCCAATCCAATCCAATC+GGG 0.557244 2:-65407415 MsG0280010158.01.T01:five_prime_UTR
TACTGTCATTACTTCTACAA+GGG 0.558096 2:+65405836 None:intergenic
AGACCTATCTTCAGAACTAG+AGG 0.558097 2:+65406398 None:intergenic
AAAGACAAAAGAAGATCGAG+GGG 0.559295 2:-65406079 MsG0280010158.01.T01:CDS
AGAAGAGGAATTGAGGGCTG+AGG 0.559554 2:-65405764 MsG0280010158.01.T01:CDS
GTGGTTTAGACTAAGGGAAG+TGG 0.561766 2:-65406525 MsG0280010158.01.T01:intron
GATTGGATTGGATTGGATTG+GGG 0.569836 2:+65407418 None:intergenic
AAAGAGAAACCTCACGGCGA+CGG 0.571181 2:+65406466 None:intergenic
CTATGATGATTCCAAAGGCA+TGG 0.584367 2:-65406433 MsG0280010158.01.T01:CDS
GAAGTAATGACAGTAACGAT+GGG 0.591074 2:-65405828 MsG0280010158.01.T01:CDS
AGAAAGACAAAAGAAGATCG+AGG 0.593750 2:-65406081 MsG0280010158.01.T01:CDS
TCATCATGGGGACTACTACA+AGG 0.594139 2:+65406007 None:intergenic
GCAGGTCGATTACTCTAATG+GGG 0.594561 2:-65407265 MsG0280010158.01.T01:exon
GTAGCCTTGAAGTTCGTGCT+GGG 0.595750 2:-65405681 MsG0280010158.01.T01:CDS
AGTGTTAGTTCGGTGAGCAG+TGG 0.604734 2:-65406184 MsG0280010158.01.T01:CDS
CAGTGAATATGAGAGTTCCA+GGG 0.619436 2:-65406119 MsG0280010158.01.T01:CDS
TCAGACTATGATGATTCCAA+AGG 0.631218 2:-65406438 MsG0280010158.01.T01:CDS
AGAAGTAATGACAGTAACGA+TGG 0.631444 2:-65405829 MsG0280010158.01.T01:CDS
AGCTAGAAAGAGAAACCTCA+CGG 0.631927 2:+65406460 None:intergenic
AGATAAGCATGATGAGACGA+AGG 0.634703 2:-65406245 MsG0280010158.01.T01:CDS
AAAGAAGGTCCGTCGCCGTG+AGG 0.652504 2:-65406475 MsG0280010158.01.T01:CDS
AGACGAAGGAGAAATCGCGT+AGG 0.678309 2:-65406231 MsG0280010158.01.T01:CDS
AAGTAATGACAGTAACGATG+GGG 0.680469 2:-65405827 MsG0280010158.01.T01:CDS
TCGTAAGTACATTCATCATG+GGG 0.695225 2:+65405995 None:intergenic
AGTGAATATGAGAGTTCCAG+GGG 0.696707 2:-65406118 MsG0280010158.01.T01:CDS
AGTAATGACAGTAACGATGG+GGG 0.715447 2:-65405826 MsG0280010158.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATATTTATTAATTTTAATC+GGG - Chr2:65405999-65406018 MsG0280010158.01.T01:CDS 10.0%
!!! TTGCTATTTATATAATTTTT+CGG - Chr2:65406065-65406084 MsG0280010158.01.T01:CDS 10.0%
!!! ATTGAATTTTCTATTTGATT+TGG - Chr2:65406511-65406530 MsG0280010158.01.T01:CDS 15.0%
!! TAAGAAACATAAATCAAAGA+AGG - Chr2:65406654-65406673 MsG0280010158.01.T01:intron 20.0%
!!! AATGAACTTTGAAAAAGAAA+AGG + Chr2:65405857-65405876 None:intergenic 20.0%
!!! ATGAACTTTGAAAAAGAAAA+GGG + Chr2:65405856-65405875 None:intergenic 20.0%
! AATGAAATTGATTACCTTAG+AGG + Chr2:65405944-65405963 None:intergenic 25.0%
! AGGTATATATAGATCGATAT+TGG - Chr2:65405662-65405681 MsG0280010158.01.T01:CDS 25.0%
! ATATATGATAGACACAAAGT+TGG + Chr2:65406100-65406119 None:intergenic 25.0%
! ATCGATCTATATATACCTTT+AGG + Chr2:65405660-65405679 None:intergenic 25.0%
! TTATTTCCATAAATTCTCCA+GGG - Chr2:65406364-65406383 MsG0280010158.01.T01:CDS 25.0%
!! AAAAACAGATTTTTATCTCC+TGG + Chr2:65406179-65406198 None:intergenic 25.0%
!! AAAACAGATTTTTATCTCCT+GGG + Chr2:65406178-65406197 None:intergenic 25.0%
!!! GAATATGCTTTTTTCCTATT+TGG - Chr2:65406597-65406616 MsG0280010158.01.T01:intron 25.0%
!!! GGTGTTTTTTTTTTGGTTTA+AGG - Chr2:65406229-65406248 MsG0280010158.01.T01:CDS 25.0%
!!! TTTTTCAAAGTTCATTTTGC+AGG - Chr2:65405861-65405880 MsG0280010158.01.T01:CDS 25.0%
AGTTATTACTGTTGCAAAAG+AGG - Chr2:65407223-65407242 MsG0280010158.01.T01:CDS 30.0%
ATAGGTCTAAAAAAAGAGAG+CGG - Chr2:65406761-65406780 MsG0280010158.01.T01:intron 30.0%
ATTGACATAAACACTTGTGA+CGG - Chr2:65406288-65406307 MsG0280010158.01.T01:intron 30.0%
CTACTCATATCTCTAAGTTT+GGG + Chr2:65407447-65407466 None:intergenic 30.0%
CTTATTTCCATAAATTCTCC+AGG - Chr2:65406363-65406382 MsG0280010158.01.T01:CDS 30.0%
GGAGAATTTATGGAAATAAG+CGG + Chr2:65406363-65406382 None:intergenic 30.0%
GTTATTACTGTTGCAAAAGA+GGG - Chr2:65407224-65407243 MsG0280010158.01.T01:CDS 30.0%
TACTGTCATTACTTCTACAA+GGG + Chr2:65407311-65407330 None:intergenic 30.0%
TTACTGTCATTACTTCTACA+AGG + Chr2:65407312-65407331 None:intergenic 30.0%
TTCGTAAGTACATTCATCAT+GGG + Chr2:65407153-65407172 None:intergenic 30.0%
! ATTAAGTTGTTTACCTATGC+AGG - Chr2:65406478-65406497 MsG0280010158.01.T01:CDS 30.0%
! TATTTGGTGGTTTAGACTAA+GGG - Chr2:65406613-65406632 MsG0280010158.01.T01:intron 30.0%
! TTAAGTTGTTTACCTATGCA+GGG - Chr2:65406479-65406498 MsG0280010158.01.T01:CDS 30.0%
!!! GGTGATTGGTGTTTTTTTTT+TGG - Chr2:65406222-65406241 MsG0280010158.01.T01:CDS 30.0%
!!! TATGCTTTTTTCCTATTTGG+TGG - Chr2:65406600-65406619 MsG0280010158.01.T01:intron 30.0%
!!! TTTTGGTTTAAGGATCTGTT+TGG - Chr2:65406239-65406258 MsG0280010158.01.T01:CDS 30.0%
AAAGACAAAAGAAGATCGAG+GGG - Chr2:65407065-65407084 MsG0280010158.01.T01:intron 35.0%
AAGTAATGACAGTAACGATG+GGG - Chr2:65407317-65407336 MsG0280010158.01.T01:five_prime_UTR 35.0%
AATAAGCGGAACACAACTTA+TGG + Chr2:65406349-65406368 None:intergenic 35.0%
AATACATTAAGACCCTGCAT+AGG + Chr2:65406494-65406513 None:intergenic 35.0%
AGAAAGACAAAAGAAGATCG+AGG - Chr2:65407063-65407082 MsG0280010158.01.T01:intron 35.0%
AGAAGTAATGACAGTAACGA+TGG - Chr2:65407315-65407334 MsG0280010158.01.T01:five_prime_UTR 35.0%
ATGAAAAAGTCGTAAGAAGC+GGG - Chr2:65406800-65406819 MsG0280010158.01.T01:intron 35.0%
CTTAGTCTAAACCACCAAAT+AGG + Chr2:65406614-65406633 None:intergenic 35.0%
GAAAGACAAAAGAAGATCGA+GGG - Chr2:65407064-65407083 MsG0280010158.01.T01:intron 35.0%
GAAGTAATGACAGTAACGAT+GGG - Chr2:65407316-65407335 MsG0280010158.01.T01:five_prime_UTR 35.0%
GATCATCTACAATCTCTCTT+TGG + Chr2:65407281-65407300 None:intergenic 35.0%
GATGAAAAAGTCGTAAGAAG+CGG - Chr2:65406799-65406818 MsG0280010158.01.T01:intron 35.0%
GATTACCTTAGAGGAATGTT+TGG + Chr2:65405935-65405954 None:intergenic 35.0%
GCTACTCATATCTCTAAGTT+TGG + Chr2:65407448-65407467 None:intergenic 35.0%
GTGTATAATTCATGTTTCCC+AGG - Chr2:65406158-65406177 MsG0280010158.01.T01:CDS 35.0%
GTTCGTAAGTACATTCATCA+TGG + Chr2:65407154-65407173 None:intergenic 35.0%
GTTTAAGGATCTGTTTGGAT+TGG - Chr2:65406244-65406263 MsG0280010158.01.T01:CDS 35.0%
TCAACAGACTACATATGGAA+AGG + Chr2:65406561-65406580 None:intergenic 35.0%
TCAACTCAACAGACTACATA+TGG + Chr2:65406566-65406585 None:intergenic 35.0%
TCAGACTATGATGATTCCAA+AGG - Chr2:65406706-65406725 MsG0280010158.01.T01:intron 35.0%
TCGTAAGTACATTCATCATG+GGG + Chr2:65407152-65407171 None:intergenic 35.0%
TGAAGAAGAAGAAGCGATTA+GGG + Chr2:65405810-65405829 None:intergenic 35.0%
TGATGAATGTACTTACGAAC+AGG - Chr2:65407154-65407173 MsG0280010158.01.T01:intron 35.0%
TGCAAAGAGTGGTAGATATA+GGG - Chr2:65407100-65407119 MsG0280010158.01.T01:intron 35.0%
TTGTGAACTTAACTGACACT+GGG - Chr2:65406136-65406155 MsG0280010158.01.T01:CDS 35.0%
! AATCCACCTAGATTTGTTCT+CGG + Chr2:65407198-65407217 None:intergenic 35.0%
! ACTATTTTCATAAGCTACCC+TGG + Chr2:65406384-65406403 None:intergenic 35.0%
! CTATTTGGTGGTTTAGACTA+AGG - Chr2:65406612-65406631 MsG0280010158.01.T01:intron 35.0%
! TTAGAAGAGACATTCAGGTT+GGG - Chr2:65406985-65407004 MsG0280010158.01.T01:intron 35.0%
!! AGTGTTTCTTTTGAGTGAAG+TGG + Chr2:65405912-65405931 None:intergenic 35.0%
AAGCTACCCTGGAGAATTTA+TGG + Chr2:65406373-65406392 None:intergenic 40.0%
ACACTCCAAACATTCCTCTA+AGG - Chr2:65405927-65405946 MsG0280010158.01.T01:intron 40.0%
ACAGTGAATATGAGAGTTCC+AGG - Chr2:65407024-65407043 MsG0280010158.01.T01:intron 40.0%
AGACCTATCTTCAGAACTAG+AGG + Chr2:65406749-65406768 None:intergenic 40.0%
AGATAAGCATGATGAGACGA+AGG - Chr2:65406899-65406918 MsG0280010158.01.T01:intron 40.0%
AGCTAGAAAGAGAAACCTCA+CGG + Chr2:65406687-65406706 None:intergenic 40.0%
AGTAATGACAGTAACGATGG+GGG - Chr2:65407318-65407337 MsG0280010158.01.T01:five_prime_UTR 40.0%
AGTGAATATGAGAGTTCCAG+GGG - Chr2:65407026-65407045 MsG0280010158.01.T01:intron 40.0%
CAATCACCTCACACAACAAA+GGG + Chr2:65406210-65406229 None:intergenic 40.0%
CAATCCAATCCAATCCAATC+GGG - Chr2:65405729-65405748 MsG0280010158.01.T01:CDS 40.0%
CAGTGAATATGAGAGTTCCA+GGG - Chr2:65407025-65407044 MsG0280010158.01.T01:intron 40.0%
CCAATCCAATCCAATCCAAT+CGG - Chr2:65405728-65405747 MsG0280010158.01.T01:CDS 40.0%
CTATGATGATTCCAAAGGCA+TGG - Chr2:65406711-65406730 MsG0280010158.01.T01:intron 40.0%
CTTAGAAGAGACATTCAGGT+TGG - Chr2:65406984-65407003 MsG0280010158.01.T01:intron 40.0%
GAAATCGCGTAGGAAGAAAA+AGG - Chr2:65406923-65406942 MsG0280010158.01.T01:intron 40.0%
GAGAGAAGCAAGTGTTAGTT+CGG - Chr2:65406950-65406969 MsG0280010158.01.T01:intron 40.0%
GGAAGAGAAAAAAGGTGAAG+AGG - Chr2:65406874-65406893 MsG0280010158.01.T01:intron 40.0%
GTATGCCAGGAAGAGAAAAA+AGG - Chr2:65406866-65406885 MsG0280010158.01.T01:intron 40.0%
GTGAAGAAGAAGAAGCGATT+AGG + Chr2:65405811-65405830 None:intergenic 40.0%
GTGCAAAGAGTGGTAGATAT+AGG - Chr2:65407099-65407118 MsG0280010158.01.T01:intron 40.0%
GTTGTGAACTTAACTGACAC+TGG - Chr2:65406135-65406154 MsG0280010158.01.T01:CDS 40.0%
TGCAGGTCGATTACTCTAAT+GGG - Chr2:65405878-65405897 MsG0280010158.01.T01:intron 40.0%
TTGCAGGTCGATTACTCTAA+TGG - Chr2:65405877-65405896 MsG0280010158.01.T01:intron 40.0%
! CGATTGGATTGGATTGGATT+GGG + Chr2:65405730-65405749 None:intergenic 40.0%
! GATTGGATTGGATTGGATTG+GGG + Chr2:65405729-65405748 None:intergenic 40.0%
!! TGTCCTCTAGTTCTGAAGAT+AGG - Chr2:65406743-65406762 MsG0280010158.01.T01:intron 40.0%
!! TTTTGTCCCTTTGTTGTGTG+AGG - Chr2:65406201-65406220 MsG0280010158.01.T01:CDS 40.0%
!!! CTTCACCTTTTTTCTCTTCC+TGG + Chr2:65406874-65406893 None:intergenic 40.0%
ACGTGTCCGAGAACAAATCT+AGG - Chr2:65407189-65407208 MsG0280010158.01.T01:intron 45.0%
ATGCACCAGAAGAGGAATTG+AGG - Chr2:65407373-65407392 MsG0280010158.01.T01:five_prime_UTR 45.0%
CCAATCACCTCACACAACAA+AGG + Chr2:65406211-65406230 None:intergenic 45.0%
CTGGGACAGGGAATCTAAAA+AGG - Chr2:65407481-65407500 MsG0280010158.01.T01:five_prime_UTR 45.0%
GAAAGAGAACCCGATTGGAT+TGG + Chr2:65405741-65405760 None:intergenic 45.0%
GCAGGTCGATTACTCTAATG+GGG - Chr2:65405879-65405898 MsG0280010158.01.T01:intron 45.0%
GGACAGGGAATCTAAAAAGG+AGG - Chr2:65407484-65407503 MsG0280010158.01.T01:five_prime_UTR 45.0%
GTGGTTTAGACTAAGGGAAG+TGG - Chr2:65406619-65406638 MsG0280010158.01.T01:intron 45.0%
TACACATGATGCACCAGAAG+AGG - Chr2:65407365-65407384 MsG0280010158.01.T01:five_prime_UTR 45.0%
TCATCATGGGGACTACTACA+AGG + Chr2:65407140-65407159 None:intergenic 45.0%
TGCACCAGAAGAGGAATTGA+GGG - Chr2:65407374-65407393 MsG0280010158.01.T01:five_prime_UTR 45.0%
TGGGCTTAGAAGAGACATTC+AGG - Chr2:65406980-65406999 MsG0280010158.01.T01:intron 45.0%
TGTCCGAGAACAAATCTAGG+TGG - Chr2:65407192-65407211 MsG0280010158.01.T01:intron 45.0%
! AAAGTCGTAAGAAGCGGGTT+CGG - Chr2:65406805-65406824 MsG0280010158.01.T01:intron 45.0%
! AGAACCCGATTGGATTGGAT+TGG + Chr2:65405736-65405755 None:intergenic 45.0%
! AGAAGTGGAAGTGCAAAGAG+TGG - Chr2:65407089-65407108 MsG0280010158.01.T01:intron 45.0%
! CCGATTGGATTGGATTGGAT+TGG + Chr2:65405731-65405750 None:intergenic 45.0%
! CCTTTGTTGTGTGAGGTGAT+TGG - Chr2:65406208-65406227 MsG0280010158.01.T01:CDS 45.0%
! CTTTTCTTTCTGTCTTCCCC+TGG + Chr2:65407045-65407064 None:intergenic 45.0%
! GATTGGATTGGATTGGGGTT+AGG + Chr2:65405724-65405743 None:intergenic 45.0%
!!! TCATATTTATTAATTTTAAT+CGG - Chr2:65405998-65406017 MsG0280010158.01.T01:CDS 5.0%
AAAGAGAAACCTCACGGCGA+CGG + Chr2:65406681-65406700 None:intergenic 50.0%
AGAAGAGGAATTGAGGGCTG+AGG - Chr2:65407380-65407399 MsG0280010158.01.T01:five_prime_UTR 50.0%
AGAAGATCGAGGGGAAGAAG+TGG - Chr2:65407074-65407093 MsG0280010158.01.T01:intron 50.0%
AGACGAAGGAGAAATCGCGT+AGG - Chr2:65406913-65406932 MsG0280010158.01.T01:intron 50.0%
CAACGATGTGTCCATGCCTT+TGG + Chr2:65406725-65406744 None:intergenic 50.0%
GCGAAGAAAGAGAACCCGAT+TGG + Chr2:65405746-65405765 None:intergenic 50.0%
GTGAGGACTCTTTGTATGCC+AGG - Chr2:65406853-65406872 MsG0280010158.01.T01:intron 50.0%
TCAGCCCTCAATTCCTCTTC+TGG + Chr2:65407381-65407400 None:intergenic 50.0%
TTGAAGTTCGTGCTGGGACA+GGG - Chr2:65407469-65407488 MsG0280010158.01.T01:five_prime_UTR 50.0%
! AGTAGCCTTGAAGTTCGTGC+TGG - Chr2:65407462-65407481 MsG0280010158.01.T01:five_prime_UTR 50.0%
! AGTGTTAGTTCGGTGAGCAG+TGG - Chr2:65406960-65406979 MsG0280010158.01.T01:intron 50.0%
! ATACAGCTCTGACAGCAGTG+AGG - Chr2:65406836-65406855 MsG0280010158.01.T01:intron 50.0%
! GTAGCCTTGAAGTTCGTGCT+GGG - Chr2:65407463-65407482 MsG0280010158.01.T01:five_prime_UTR 50.0%
! GTGTTAGTTCGGTGAGCAGT+GGG - Chr2:65406961-65406980 MsG0280010158.01.T01:intron 50.0%
! TAACGATGGGGGCACAAAGA+GGG - Chr2:65407329-65407348 MsG0280010158.01.T01:five_prime_UTR 50.0%
CTGTCCCAGCACGAACTTCA+AGG + Chr2:65407470-65407489 None:intergenic 55.0%
CTTGAAGTTCGTGCTGGGAC+AGG - Chr2:65407468-65407487 MsG0280010158.01.T01:five_prime_UTR 55.0%
TTGAGGGCTGAGGATGTGAC+AGG - Chr2:65407390-65407409 MsG0280010158.01.T01:five_prime_UTR 55.0%
! GTAACGATGGGGGCACAAAG+AGG - Chr2:65407328-65407347 MsG0280010158.01.T01:five_prime_UTR 55.0%
AAAGAAGGTCCGTCGCCGTG+AGG - Chr2:65406669-65406688 MsG0280010158.01.T01:intron 60.0%
! TGGGGGCACAAAGAGGGAGT+TGG - Chr2:65407335-65407354 MsG0280010158.01.T01:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 65405651 65407515 65405651 ID=MsG0280010158.01;Name=MsG0280010158.01
Chr2 mRNA 65405651 65407515 65405651 ID=MsG0280010158.01.T01;Parent=MsG0280010158.01;Name=MsG0280010158.01.T01;_AED=0.49;_eAED=0.49;_QI=245|0.33|0.25|1|1|1|4|0|261
Chr2 exon 65405651 65405882 65405651 ID=MsG0280010158.01.T01:exon:14191;Parent=MsG0280010158.01.T01
Chr2 exon 65405974 65406291 65405974 ID=MsG0280010158.01.T01:exon:14190;Parent=MsG0280010158.01.T01
Chr2 exon 65406356 65406538 65406356 ID=MsG0280010158.01.T01:exon:14189;Parent=MsG0280010158.01.T01
Chr2 exon 65407218 65407515 65407218 ID=MsG0280010158.01.T01:exon:14188;Parent=MsG0280010158.01.T01
Chr2 five_prime_UTR 65407271 65407515 65407271 ID=MsG0280010158.01.T01:five_prime_utr;Parent=MsG0280010158.01.T01
Chr2 CDS 65407218 65407270 65407218 ID=MsG0280010158.01.T01:cds;Parent=MsG0280010158.01.T01
Chr2 CDS 65406356 65406538 65406356 ID=MsG0280010158.01.T01:cds;Parent=MsG0280010158.01.T01
Chr2 CDS 65405974 65406291 65405974 ID=MsG0280010158.01.T01:cds;Parent=MsG0280010158.01.T01
Chr2 CDS 65405651 65405882 65405651 ID=MsG0280010158.01.T01:cds;Parent=MsG0280010158.01.T01
Gene Sequence

>MsG0280010158.01.T01

ATGGGGAAATCATCCACTTCACTCAAAAGAAACACTCCAAACATTCCTCTAAGACTAAGGGAAGTGGCAGAAGTAAGAGTAAGAAACATAAATCAAAGAAGGTCCGTCGCCGTGAGGTTTCTCTTTCTAGCTCAGACTATGATGATTCCAAAGGCATGGACACATCGTTGTCCTCTAGTTCTGAAGATAGGTCTAAAAAAAGAGAGCGGTCTCGCACAAGAAAAGATGAAAAAGTCGAAGAGAAAAAAGGTGAAGAGGAAAGATAAGCATGATGAGACGAAGGAGAAATCGCGTAGGAAGAAAAAGGTTAAGAGAGAAGCAAGTGTTAGTTCGGTGAGCAGTGGGCTTAGAAGAGACATTCAGGTTGGGATTGACAGCAATGACGACAGTGAATATGAGAGTTCCAGGGGAAGACAGAAAGAAAAGAAAGACAAAAGAAGATCGAGGGGAAGAAGTGGAAGTGCAAAGAGTGGTAGATATAGGGCTCGAAGTTGTTCTCCTTGTAGTAGTCCCCATGATGAATGTACTTACGAACAGGCTGAAAACAAATACGTAGAGATTGTAGATGATCTTGATTACCCTTGTAGAAGTAATGACAGTAACGATGGGGGCACAAAGAGGGAGTTGGATCATCATACACATGATGCACCAGAAGAGGAATTGAGGGCTGAGGATGTGACAGGAATTATGAATACTGATGTTAACTTCATAGAGCCCAAACTTAGAGATATGAGTAGCCTTGAAGTTCGTGCTGGGACAGGGAATCTAAAAAGGAGGAACAAATGA

Protein sequence

>MsG0280010158.01.T01

MGKSSTSLKRNTPNIPLRLREVAEVRVRNINQRRSVAVRFLFLAQTMMIPKAWTHRCPLVLKIGLKKESGLAQEKMKKSKRKKVKRKDKHDETKEKSRRKKKVKREASVSSVSSGLRRDIQVGIDSNDDSEYESSRGRQKEKKDKRRSRGRSGSAKSGRYRARSCSPCSSPHDECTYEQAENKYVEIVDDLDYPCRSNDSNDGGTKRELDHHTHDAPEEELRAEDVTGIMNTDVNFIEPKLRDMSSLEVRAGTGNLKRRNK*