AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008765.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008765.01.T01 MTR_2g451540 96.460 678 23 1 1 678 1 677 0.0 1345
MsG0280008765.01.T01 MTR_1g012840 50.217 691 304 11 1 678 1 664 0.0 654
MsG0280008765.01.T01 MTR_4g132780 38.174 723 351 11 32 672 31 739 3.90e-146 444
MsG0280008765.01.T01 MTR_2g025130 41.163 447 222 7 239 677 29 442 4.53e-102 320
MsG0280008765.01.T01 MTR_7g059150 36.752 117 69 2 37 150 92 206 4.01e-15 76.6
MsG0280008765.01.T01 MTR_2g090135 34.188 117 72 2 37 150 95 209 7.57e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008765.01.T01 AT2G25290 51.449 690 297 12 10 678 20 692 0.0 661
MsG0280008765.01.T01 AT2G25290 51.449 690 297 12 10 678 20 692 0.0 661
MsG0280008765.01.T01 AT2G25290 51.449 690 297 12 10 678 20 692 0.0 661
MsG0280008765.01.T01 AT2G25290 51.449 690 297 12 10 678 20 692 0.0 661
MsG0280008765.01.T01 AT4G32070 49.501 701 294 13 28 678 39 729 0.0 639
MsG0280008765.01.T01 AT4G32070 49.501 701 294 13 28 678 39 729 0.0 639
MsG0280008765.01.T01 AT5G20360 48.160 652 310 10 37 677 113 747 0.0 566
MsG0280008765.01.T01 AT5G20360 48.160 652 310 10 37 677 123 757 0.0 566
MsG0280008765.01.T01 AT5G20360 48.160 652 310 10 37 677 123 757 0.0 566
MsG0280008765.01.T01 AT5G20360 48.160 652 310 10 37 677 63 697 0.0 566
MsG0280008765.01.T01 AT5G20360 48.160 652 310 10 37 677 63 697 0.0 566
MsG0280008765.01.T01 AT5G20360 48.160 652 310 10 37 677 33 667 0.0 565
MsG0280008765.01.T01 AT5G20360 48.160 652 310 10 37 677 33 667 0.0 565
MsG0280008765.01.T01 AT1G62390 37.921 712 367 11 28 675 39 739 5.43e-145 441
MsG0280008765.01.T01 AT4G30480 35.897 117 70 2 37 150 102 216 2.58e-12 68.6

Find 136 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTGTGGAATTCAAATT+AGG 0.110801 2:-38031132 MsG0280008765.01.T01:CDS
AACAAAGCTTTACCATATTT+TGG 0.130985 2:+38032689 None:intergenic
TTCACCACACAACCGTTCTT+AGG 0.215577 2:+38031873 None:intergenic
TAATTTCTCTTAGTTGAAAA+AGG 0.249599 2:+38032114 None:intergenic
TCGAACAAGCGAAACTTTCT+TGG 0.255608 2:-38031413 MsG0280008765.01.T01:CDS
CAACAATGCTGAGGAGAATA+TGG 0.273348 2:-38031325 MsG0280008765.01.T01:CDS
GGCGATTAATGAATGCAATT+TGG 0.285660 2:-38032726 MsG0280008765.01.T01:CDS
GGAGAAACAAGTGAGGAAAA+TGG 0.297609 2:-38032995 MsG0280008765.01.T01:CDS
TGATCGTCCTCAGCCTTATT+TGG 0.310717 2:+38032326 None:intergenic
CAGCTCTAGCATTGTTCAAT+TGG 0.314408 2:-38031638 MsG0280008765.01.T01:CDS
CACTTGTGGAATTCAAATTA+GGG 0.324137 2:-38031131 MsG0280008765.01.T01:CDS
CTTGAAGTTACTCCAAAATA+TGG 0.326606 2:-38032701 MsG0280008765.01.T01:CDS
GCTGAGGAGAATATGGAAAA+AGG 0.329603 2:-38031318 MsG0280008765.01.T01:CDS
TCATAGAATGGATCGTGATT+AGG 0.339265 2:+38031942 None:intergenic
GGACAACATTGCACCAAATA+AGG 0.342512 2:-38032339 MsG0280008765.01.T01:CDS
TTATGAGGCTTTGAATAGAT+TGG 0.361909 2:-38032651 MsG0280008765.01.T01:CDS
TACGAAGGCTTTCTTGCTCT+TGG 0.363383 2:-38031447 MsG0280008765.01.T01:CDS
TACTTAGACTTTCATGAACT+TGG 0.364355 2:-38031756 MsG0280008765.01.T01:CDS
TACCTCCTGCCATGTCAAAT+AGG 0.379171 2:+38031676 None:intergenic
AGCTCTAGCATTGTTCAATT+GGG 0.381899 2:-38031637 MsG0280008765.01.T01:CDS
AAATTAAAAGTTCGTATGAA+TGG 0.399777 2:-38031536 MsG0280008765.01.T01:CDS
ACAAGAACTGCTCCAAGGCT+TGG 0.406799 2:+38032077 None:intergenic
TAAGCAGAAAGAGGATGTTA+AGG 0.407983 2:-38032246 MsG0280008765.01.T01:CDS
CTCAGTGAAGCCTCCACTAC+CGG 0.408622 2:-38031261 MsG0280008765.01.T01:CDS
GAATTGAAGTGGGCTGAAAC+AGG 0.411735 2:-38032005 MsG0280008765.01.T01:CDS
TCCAACGCCATGATATTATT+CGG 0.416082 2:+38032587 None:intergenic
TCAAATAACACTGCTGTAGA+TGG 0.416089 2:-38031009 MsG0280008765.01.T01:CDS
TGATGTGGAAAAGGTTGAAA+TGG 0.417154 2:-38031904 MsG0280008765.01.T01:CDS
TATAAGATGGGCTCAATTGC+CGG 0.418935 2:-38032147 MsG0280008765.01.T01:CDS
GAAAGCGCTCAAATTGCTTC+CGG 0.424125 2:-38032828 MsG0280008765.01.T01:CDS
GAGAAACAAGTGAGGAAAAT+GGG 0.424347 2:-38032994 MsG0280008765.01.T01:CDS
TCACCACACAACCGTTCTTA+GGG 0.427681 2:+38031874 None:intergenic
ACCCGTATGGCATGAATCAT+TGG 0.428713 2:-38031106 MsG0280008765.01.T01:CDS
AACATTACAGCTACATCTGT+TGG 0.438941 2:+38031045 None:intergenic
GACACATCTATATGATTTCC+CGG 0.441015 2:+38032809 None:intergenic
AAAGCGCTCAAATTGCTTCC+GGG 0.441561 2:-38032827 MsG0280008765.01.T01:CDS
TGTGACAGGTTCCCAAGCCT+TGG 0.443112 2:-38032089 MsG0280008765.01.T01:CDS
GCTCATCTTGTGTTGAGGAT+TGG 0.446370 2:-38031833 MsG0280008765.01.T01:CDS
TAAGAGAAATTATTTGTGAC+AGG 0.451847 2:-38032103 MsG0280008765.01.T01:CDS
ATGCTAGAGCTGTCATCTCT+TGG 0.452894 2:+38031649 None:intergenic
AATTAAAAGTTCGTATGAAT+GGG 0.453467 2:-38031535 MsG0280008765.01.T01:CDS
AGACGAAGTTTCTCATAGAA+TGG 0.453833 2:+38031930 None:intergenic
CAAGAACTGCTCCAAGGCTT+GGG 0.454815 2:+38032078 None:intergenic
AAAGATGGTTCAACATAATC+CGG 0.460718 2:+38032491 None:intergenic
CTTCTCTTCTAGTTTCTCCT+CGG 0.470200 2:+38032370 None:intergenic
TGCTATATGCAGATGGGACT+TGG 0.472267 2:-38032761 MsG0280008765.01.T01:CDS
ATCAGATGAAACTGCAGCGC+TGG 0.475338 2:-38031211 MsG0280008765.01.T01:CDS
GTCGTATGTGCGGAGTAATA+TGG 0.475460 2:-38032789 MsG0280008765.01.T01:CDS
CAGAAAGAATATGCAAAAGC+TGG 0.482907 2:-38031510 MsG0280008765.01.T01:CDS
GGGGAAATGTGCATATGTCT+AGG 0.483385 2:-38031617 MsG0280008765.01.T01:CDS
AAAAGTGCACTTGAAGATAG+AGG 0.485144 2:-38032548 MsG0280008765.01.T01:CDS
GTCACAGATAAATCTCTTGT+GGG 0.488756 2:-38031175 MsG0280008765.01.T01:CDS
TAAGCCATCCAGCCCGGTAG+TGG 0.488867 2:+38031248 None:intergenic
GAAACTAGAAGAGAAGAAAG+AGG 0.489348 2:-38032363 MsG0280008765.01.T01:CDS
TGGGACTTGGTGAGTACCCT+AGG 0.490644 2:-38032748 MsG0280008765.01.T01:CDS
TCGGAAGGCACGTCAAAAGA+TGG 0.491701 2:+38032476 None:intergenic
GAAGAGAGCGAGGTGTTATG+AGG 0.496712 2:-38032666 MsG0280008765.01.T01:CDS
TACTTTGTTGTTTATTGCCA+CGG 0.500099 2:-38032924 MsG0280008765.01.T01:CDS
TATCATGGCGTTGGAGATCT+CGG 0.501474 2:-38032579 MsG0280008765.01.T01:CDS
GTGGGCTGAAACAGGATCAC+AGG 0.502534 2:-38031997 MsG0280008765.01.T01:CDS
TTCCAATGATTCATGCCATA+CGG 0.509759 2:+38031104 None:intergenic
GGCGTTGGAGATCTCGGATA+AGG 0.510091 2:-38032573 MsG0280008765.01.T01:CDS
GCCTCCACTACCGGGCTGGA+TGG 0.511042 2:-38031252 MsG0280008765.01.T01:CDS
TGAAGCCTCCACTACCGGGC+TGG 0.511196 2:-38031256 MsG0280008765.01.T01:CDS
GTAATAAGATGTTTCAAAAG+AGG 0.513730 2:-38032880 MsG0280008765.01.T01:CDS
GCCGAATAATATCATGGCGT+TGG 0.518149 2:-38032588 MsG0280008765.01.T01:CDS
TCGTCTGAATGATGTGGAAA+AGG 0.524502 2:-38031913 MsG0280008765.01.T01:CDS
ACTTAGACTTTCATGAACTT+GGG 0.525905 2:-38031755 MsG0280008765.01.T01:CDS
TCAAATTAGGGCTACCCGTA+TGG 0.527716 2:-38031119 MsG0280008765.01.T01:CDS
TCCAATGATTCATGCCATAC+GGG 0.528365 2:+38031105 None:intergenic
GAGGGATCTTCGAGGAGCTA+TGG 0.528661 2:-38032861 MsG0280008765.01.T01:CDS
ATTGAGAAGTTTGAACATGC+AGG 0.538923 2:-38031075 MsG0280008765.01.T01:CDS
TTGCATTCATTAATCGCCCT+AGG 0.542158 2:+38032731 None:intergenic
GCCATCCAGCCCGGTAGTGG+AGG 0.546360 2:+38031251 None:intergenic
CAGCGCTGGCGGCAAACATG+AGG 0.547135 2:-38031197 MsG0280008765.01.T01:CDS
TTGCTTCTCTACAATTTCAT+CGG 0.549240 2:+38032394 None:intergenic
TAATAAGATGTTTCAAAAGA+GGG 0.549709 2:-38032879 MsG0280008765.01.T01:CDS
GGGAAATGTGCATATGTCTA+GGG 0.549993 2:-38031616 MsG0280008765.01.T01:CDS
GCTCAAGAGTTGAAGGAAGA+AGG 0.551067 2:-38032902 MsG0280008765.01.T01:CDS
GAAACTCTATTCAGAGGCTG+TGG 0.552027 2:-38031730 MsG0280008765.01.T01:CDS
TGCCACGGCTCAAGAGTTGA+AGG 0.552666 2:-38032909 MsG0280008765.01.T01:CDS
TGTTAGCTCATCTTGTGTTG+AGG 0.554112 2:-38031838 MsG0280008765.01.T01:CDS
TTTAAATAAGCCATCCAGCC+CGG 0.555273 2:+38031242 None:intergenic
TGAGAAAATTGAGTTGCCTC+CGG 0.555411 2:-38032510 MsG0280008765.01.T01:CDS
TTCCTTCAACTCTTGAGCCG+TGG 0.557472 2:+38032907 None:intergenic
AGATGAAACTGCAGCGCTGG+CGG 0.562325 2:-38031208 MsG0280008765.01.T01:CDS
CAAGGCCTATTTGACATGGC+AGG 0.577875 2:-38031681 MsG0280008765.01.T01:CDS
GGTCACAGATAAATCTCTTG+TGG 0.578048 2:-38031176 MsG0280008765.01.T01:CDS
TCAGTGAAGCCTCCACTACC+GGG 0.582496 2:-38031260 MsG0280008765.01.T01:CDS
ATCTTCGAGGAGCTATGGTA+AGG 0.587773 2:-38032856 MsG0280008765.01.T01:CDS
GATGGAGCCGAATAATATCA+TGG 0.587956 2:-38032594 MsG0280008765.01.T01:CDS
CACCACACAACCGTTCTTAG+GGG 0.590340 2:+38031875 None:intergenic
GCTCTAGCATTGTTCAATTG+GGG 0.591057 2:-38031636 MsG0280008765.01.T01:CDS
TGCATTCATTAATCGCCCTA+GGG 0.591150 2:+38032732 None:intergenic
ATGGATAATGCCCCTAAGAA+CGG 0.591410 2:-38031885 MsG0280008765.01.T01:CDS
CTTCGGATGAAGAATTGAAG+TGG 0.591646 2:-38032016 MsG0280008765.01.T01:CDS
GGCTGCGTGCTATATGCAGA+TGG 0.591996 2:-38032768 MsG0280008765.01.T01:CDS
GCAGAAAGAGGATGTTAAGG+AGG 0.597588 2:-38032243 MsG0280008765.01.T01:CDS
TTTCAAAAGAGGGATCTTCG+AGG 0.598758 2:-38032869 MsG0280008765.01.T01:CDS
ACCTCTGTGGAGGGCCATGT+CGG 0.600718 2:+38031360 None:intergenic
CAGCAGTGTTATTTGAACAG+TGG 0.607319 2:+38031016 None:intergenic
ATGAAAGTCTAAGTATCTGT+CGG 0.614655 2:+38031764 None:intergenic
ATTTGACAAGAACTGCTCCA+AGG 0.619046 2:+38032072 None:intergenic
GTCAAATATAGAGATCAAGA+AGG 0.619076 2:-38032056 MsG0280008765.01.T01:CDS
TTCGGATGAAGAATTGAAGT+GGG 0.621321 2:-38032015 MsG0280008765.01.T01:CDS
TCATCTTTACAACAATGCTG+AGG 0.623420 2:-38031334 MsG0280008765.01.T01:CDS
AAAGTGCACTTGAAGATAGA+GGG 0.624772 2:-38032547 MsG0280008765.01.T01:CDS
ATGTGCATATGTCTAGGGCA+AGG 0.630423 2:-38031611 MsG0280008765.01.T01:CDS
GCTGCGTGCTATATGCAGAT+GGG 0.637013 2:-38032767 MsG0280008765.01.T01:CDS
ATATAGATGTGTCGTATGTG+CGG 0.638921 2:-38032799 MsG0280008765.01.T01:CDS
TAGCTTCTACTATATACAGT+CGG 0.639708 2:+38031967 None:intergenic
CGGTTGTGTGGTGAAATCAA+AGG 0.641172 2:-38031865 MsG0280008765.01.T01:CDS
CATTGCACCAAATAAGGCTG+AGG 0.641965 2:-38032333 MsG0280008765.01.T01:CDS
TGGGATGAAACTCTATTCAG+AGG 0.642522 2:-38031736 MsG0280008765.01.T01:CDS
GAAACTTCGTCTGAATGATG+TGG 0.644851 2:-38031919 MsG0280008765.01.T01:CDS
AAGATGAAGAACCTCTGTGG+AGG 0.649172 2:+38031350 None:intergenic
GGGACTTGGTGAGTACCCTA+GGG 0.649406 2:-38032747 MsG0280008765.01.T01:CDS
GGCCTATTTGACATGGCAGG+AGG 0.649810 2:-38031678 MsG0280008765.01.T01:CDS
TGACTTGATCACAATCACTT+CGG 0.649854 2:-38032033 MsG0280008765.01.T01:CDS
ACTAGAAGAGAAGAAAGAGG+AGG 0.651831 2:-38032360 MsG0280008765.01.T01:CDS
AGCACAAGGCCTATTTGACA+TGG 0.652886 2:-38031685 MsG0280008765.01.T01:CDS
AGATGAAGAACCTCTGTGGA+GGG 0.653251 2:+38031351 None:intergenic
GCTGTATGAACGCTCACTTG+TGG 0.653961 2:-38031145 MsG0280008765.01.T01:CDS
AAGCTTTGTTGAAGAGAGCG+AGG 0.655766 2:-38032676 MsG0280008765.01.T01:CDS
GTATCATTATCATACGCAGT+CGG 0.658396 2:+38032944 None:intergenic
TGGGCTGAAACAGGATCACA+GGG 0.676880 2:-38031996 MsG0280008765.01.T01:CDS
AATTGTAGAGAAGCAAGCCG+AGG 0.677261 2:-38032387 MsG0280008765.01.T01:CDS
AATGGGAATCATAGTAACGA+CGG 0.678439 2:-38032977 MsG0280008765.01.T01:CDS
GCAAGTAGGAGAAACAAGTG+AGG 0.679397 2:-38033002 MsG0280008765.01.T01:CDS
TGCCCCTAAGAACGGTTGTG+TGG 0.685586 2:-38031877 MsG0280008765.01.T01:CDS
TCACAGATAAATCTCTTGTG+GGG 0.699010 2:-38031174 MsG0280008765.01.T01:CDS
GATGGTTCAACATAATCCGG+AGG 0.699395 2:+38032494 None:intergenic
GTAATATAGATTTACCGACA+TGG 0.713914 2:-38031374 MsG0280008765.01.T01:CDS
ACCGACATGGCCCTCCACAG+AGG 0.742103 2:-38031361 MsG0280008765.01.T01:CDS
GTTACAAGTGAAGAAGCACA+AGG 0.747985 2:-38031699 MsG0280008765.01.T01:CDS
GTAAAGATGAAGAACCTCTG+TGG 0.749593 2:+38031347 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATCTGACTTAATTTTAA+TGG + Chr2:38032521-38032540 None:intergenic 15.0%
!! AAATTAAAAGTTCGTATGAA+TGG - Chr2:38032452-38032471 MsG0280008765.01.T01:CDS 20.0%
!! AATTAAAAGTTCGTATGAAT+GGG - Chr2:38032453-38032472 MsG0280008765.01.T01:CDS 20.0%
!! TAATAAGATGTTTCAAAAGA+GGG - Chr2:38031109-38031128 MsG0280008765.01.T01:CDS 20.0%
!! TAATTTCTCTTAGTTGAAAA+AGG + Chr2:38031877-38031896 None:intergenic 20.0%
! AAAAATTGATAAGCAGAAAG+AGG - Chr2:38031733-38031752 MsG0280008765.01.T01:CDS 25.0%
! GTAATAAGATGTTTCAAAAG+AGG - Chr2:38031108-38031127 MsG0280008765.01.T01:CDS 25.0%
! GTCAATGAAGAAAAAAGTAA+TGG - Chr2:38031767-38031786 MsG0280008765.01.T01:CDS 25.0%
! TAAGAGAAATTATTTGTGAC+AGG - Chr2:38031885-38031904 MsG0280008765.01.T01:CDS 25.0%
!! AACAAAGCTTTACCATATTT+TGG + Chr2:38031302-38031321 None:intergenic 25.0%
!! ATTAAGTCAGATTTTTACGA+AGG - Chr2:38032526-38032545 MsG0280008765.01.T01:CDS 25.0%
!!! AAAACAGCAAAACTTGTTTT+TGG - Chr2:38031812-38031831 MsG0280008765.01.T01:CDS 25.0%
!!! TTTTGGTGATGATATAAGAT+GGG - Chr2:38031829-38031848 MsG0280008765.01.T01:CDS 25.0%
!!! TTTTTGGTGATGATATAAGA+TGG - Chr2:38031828-38031847 MsG0280008765.01.T01:CDS 25.0%
AAAGATGGTTCAACATAATC+CGG + Chr2:38031500-38031519 None:intergenic 30.0%
AACTGTTCAAAAATCACGTT+GGG - Chr2:38032194-38032213 MsG0280008765.01.T01:CDS 30.0%
ACTTAGACTTTCATGAACTT+GGG - Chr2:38032233-38032252 MsG0280008765.01.T01:CDS 30.0%
ATGAAAGTCTAAGTATCTGT+CGG + Chr2:38032227-38032246 None:intergenic 30.0%
CACTTGTGGAATTCAAATTA+GGG - Chr2:38032857-38032876 MsG0280008765.01.T01:CDS 30.0%
CTTGAAGTTACTCCAAAATA+TGG - Chr2:38031287-38031306 MsG0280008765.01.T01:CDS 30.0%
GAAAAAGAGCAAAAAAGAGA+AGG - Chr2:38031562-38031581 MsG0280008765.01.T01:CDS 30.0%
GCGTAATAAATCGAAAAAGA+AGG - Chr2:38031700-38031719 MsG0280008765.01.T01:CDS 30.0%
GTAATATAGATTTACCGACA+TGG - Chr2:38032614-38032633 MsG0280008765.01.T01:CDS 30.0%
GTCAAATATAGAGATCAAGA+AGG - Chr2:38031932-38031951 MsG0280008765.01.T01:CDS 30.0%
TACTTAGACTTTCATGAACT+TGG - Chr2:38032232-38032251 MsG0280008765.01.T01:CDS 30.0%
TAGCTTCTACTATATACAGT+CGG + Chr2:38032024-38032043 None:intergenic 30.0%
TCACTTGTGGAATTCAAATT+AGG - Chr2:38032856-38032875 MsG0280008765.01.T01:CDS 30.0%
TTGCTTCTCTACAATTTCAT+CGG + Chr2:38031597-38031616 None:intergenic 30.0%
!! TACTTTGTTGTTTATTGCCA+CGG - Chr2:38031064-38031083 MsG0280008765.01.T01:CDS 30.0%
!! TTATGAGGCTTTGAATAGAT+TGG - Chr2:38031337-38031356 MsG0280008765.01.T01:CDS 30.0%
!!! ACAAGTTTTGCTGTTTTCTT+AGG + Chr2:38031809-38031828 None:intergenic 30.0%
!!! CTGCTTATCAATTTTTTCCT+TGG + Chr2:38031729-38031748 None:intergenic 30.0%
AAAGTGCACTTGAAGATAGA+GGG - Chr2:38031441-38031460 MsG0280008765.01.T01:CDS 35.0%
AACATTACAGCTACATCTGT+TGG + Chr2:38032946-38032965 None:intergenic 35.0%
AATGGGAATCATAGTAACGA+CGG - Chr2:38031011-38031030 MsG0280008765.01.T01:CDS 35.0%
AGACGAAGTTTCTCATAGAA+TGG + Chr2:38032061-38032080 None:intergenic 35.0%
ATATAGATGTGTCGTATGTG+CGG - Chr2:38031189-38031208 MsG0280008765.01.T01:CDS 35.0%
ATTGAGAAGTTTGAACATGC+AGG - Chr2:38032913-38032932 MsG0280008765.01.T01:CDS 35.0%
CAGAAAGAATATGCAAAAGC+TGG - Chr2:38032478-38032497 MsG0280008765.01.T01:CDS 35.0%
GAAACTAGAAGAGAAGAAAG+AGG - Chr2:38031625-38031644 MsG0280008765.01.T01:CDS 35.0%
GAACTGTTCAAAAATCACGT+TGG - Chr2:38032193-38032212 MsG0280008765.01.T01:CDS 35.0%
GACACATCTATATGATTTCC+CGG + Chr2:38031182-38031201 None:intergenic 35.0%
GAGAAACAAGTGAGGAAAAT+GGG - Chr2:38030994-38031013 MsG0280008765.01.T01:CDS 35.0%
GGAAAAAGGAATGCTGATAT+GGG - Chr2:38032684-38032703 MsG0280008765.01.T01:CDS 35.0%
GGCGATTAATGAATGCAATT+TGG - Chr2:38031262-38031281 MsG0280008765.01.T01:CDS 35.0%
GTATCATTATCATACGCAGT+CGG + Chr2:38031047-38031066 None:intergenic 35.0%
GTCACAGATAAATCTCTTGT+GGG - Chr2:38032813-38032832 MsG0280008765.01.T01:CDS 35.0%
TAAGCAGAAAGAGGATGTTA+AGG - Chr2:38031742-38031761 MsG0280008765.01.T01:CDS 35.0%
TCAAATAACACTGCTGTAGA+TGG - Chr2:38032979-38032998 MsG0280008765.01.T01:CDS 35.0%
TCACAGATAAATCTCTTGTG+GGG - Chr2:38032814-38032833 MsG0280008765.01.T01:CDS 35.0%
TCATAGAATGGATCGTGATT+AGG + Chr2:38032049-38032068 None:intergenic 35.0%
TCATCTTTACAACAATGCTG+AGG - Chr2:38032654-38032673 MsG0280008765.01.T01:CDS 35.0%
TCCAACGCCATGATATTATT+CGG + Chr2:38031404-38031423 None:intergenic 35.0%
TGAAAAAGGCTGCAATTAAC+CGG + Chr2:38031863-38031882 None:intergenic 35.0%
TGACTTGATCACAATCACTT+CGG - Chr2:38031955-38031974 MsG0280008765.01.T01:CDS 35.0%
TGATGTGGAAAAGGTTGAAA+TGG - Chr2:38032084-38032103 MsG0280008765.01.T01:CDS 35.0%
TGGAAAAAGGAATGCTGATA+TGG - Chr2:38032683-38032702 MsG0280008765.01.T01:CDS 35.0%
TTCCAATGATTCATGCCATA+CGG + Chr2:38032887-38032906 None:intergenic 35.0%
TTCGGATGAAGAATTGAAGT+GGG - Chr2:38031973-38031992 MsG0280008765.01.T01:CDS 35.0%
! AAAAGTGCACTTGAAGATAG+AGG - Chr2:38031440-38031459 MsG0280008765.01.T01:CDS 35.0%
! AGCTCTAGCATTGTTCAATT+GGG - Chr2:38032351-38032370 MsG0280008765.01.T01:CDS 35.0%
! CTTTTCTTTCACTGCCTTTT+CGG + Chr2:38031534-38031553 None:intergenic 35.0%
!!! TGTTAGTGCTGTTTTGAAGA+TGG - Chr2:38031376-38031395 MsG0280008765.01.T01:CDS 35.0%
ACTAGAAGAGAAGAAAGAGG+AGG - Chr2:38031628-38031647 MsG0280008765.01.T01:CDS 40.0%
ATGGATAATGCCCCTAAGAA+CGG - Chr2:38032103-38032122 MsG0280008765.01.T01:CDS 40.0%
ATTTGACAAGAACTGCTCCA+AGG + Chr2:38031919-38031938 None:intergenic 40.0%
CAACAATGCTGAGGAGAATA+TGG - Chr2:38032663-38032682 MsG0280008765.01.T01:CDS 40.0%
CTTCGGATGAAGAATTGAAG+TGG - Chr2:38031972-38031991 MsG0280008765.01.T01:CDS 40.0%
GAAACTTCGTCTGAATGATG+TGG - Chr2:38032069-38032088 MsG0280008765.01.T01:CDS 40.0%
GAGCAAAAAAGAGAAGGTGA+AGG - Chr2:38031568-38031587 MsG0280008765.01.T01:CDS 40.0%
GATGGAGCCGAATAATATCA+TGG - Chr2:38031394-38031413 MsG0280008765.01.T01:CDS 40.0%
GCTCTAGCATTGTTCAATTG+GGG - Chr2:38032352-38032371 MsG0280008765.01.T01:CDS 40.0%
GCTGAGGAGAATATGGAAAA+AGG - Chr2:38032670-38032689 MsG0280008765.01.T01:CDS 40.0%
GGACAACATTGCACCAAATA+AGG - Chr2:38031649-38031668 MsG0280008765.01.T01:CDS 40.0%
GGAGAAACAAGTGAGGAAAA+TGG - Chr2:38030993-38031012 MsG0280008765.01.T01:CDS 40.0%
GGGAAATGTGCATATGTCTA+GGG - Chr2:38032372-38032391 MsG0280008765.01.T01:CDS 40.0%
GGGAAGAAAAAGAAGCAAGT+AGG - Chr2:38030972-38030991 MsG0280008765.01.T01:CDS 40.0%
GGTCACAGATAAATCTCTTG+TGG - Chr2:38032812-38032831 MsG0280008765.01.T01:CDS 40.0%
GTAAAGATGAAGAACCTCTG+TGG + Chr2:38032644-38032663 None:intergenic 40.0%
TCCAATGATTCATGCCATAC+GGG + Chr2:38032886-38032905 None:intergenic 40.0%
TCGAACAAGCGAAACTTTCT+TGG - Chr2:38032575-38032594 MsG0280008765.01.T01:CDS 40.0%
TCGTCTGAATGATGTGGAAA+AGG - Chr2:38032075-38032094 MsG0280008765.01.T01:CDS 40.0%
TGCATTCATTAATCGCCCTA+GGG + Chr2:38031259-38031278 None:intergenic 40.0%
TGGGATGAAACTCTATTCAG+AGG - Chr2:38032252-38032271 MsG0280008765.01.T01:CDS 40.0%
TGTTAGCTCATCTTGTGTTG+AGG - Chr2:38032150-38032169 MsG0280008765.01.T01:CDS 40.0%
TTGCATTCATTAATCGCCCT+AGG + Chr2:38031260-38031279 None:intergenic 40.0%
TTTAAATAAGCCATCCAGCC+CGG + Chr2:38032749-38032768 None:intergenic 40.0%
TTTCAAAAGAGGGATCTTCG+AGG - Chr2:38031119-38031138 MsG0280008765.01.T01:CDS 40.0%
! CAGCTCTAGCATTGTTCAAT+TGG - Chr2:38032350-38032369 MsG0280008765.01.T01:CDS 40.0%
! GTTACAAGTGAAGAAGCACA+AGG - Chr2:38032289-38032308 MsG0280008765.01.T01:CDS 40.0%
! TATAAGATGGGCTCAATTGC+CGG - Chr2:38031841-38031860 MsG0280008765.01.T01:CDS 40.0%
! TGAGAAAATTGAGTTGCCTC+CGG - Chr2:38031478-38031497 MsG0280008765.01.T01:CDS 40.0%
!! CAGCAGTGTTATTTGAACAG+TGG + Chr2:38032975-38032994 None:intergenic 40.0%
!! CTTCTCTTCTAGTTTCTCCT+CGG + Chr2:38031621-38031640 None:intergenic 40.0%
AAGATGAAGAACCTCTGTGG+AGG + Chr2:38032641-38032660 None:intergenic 45.0%
AATTGTAGAGAAGCAAGCCG+AGG - Chr2:38031601-38031620 MsG0280008765.01.T01:CDS 45.0%
ACCCGTATGGCATGAATCAT+TGG - Chr2:38032882-38032901 MsG0280008765.01.T01:CDS 45.0%
AGATGAAGAACCTCTGTGGA+GGG + Chr2:38032640-38032659 None:intergenic 45.0%
AGCACAAGGCCTATTTGACA+TGG - Chr2:38032303-38032322 MsG0280008765.01.T01:CDS 45.0%
ATCGAAAAAGAAGGCAGCCA+AGG - Chr2:38031709-38031728 MsG0280008765.01.T01:CDS 45.0%
ATCTTCGAGGAGCTATGGTA+AGG - Chr2:38031132-38031151 MsG0280008765.01.T01:CDS 45.0%
ATGCTAGAGCTGTCATCTCT+TGG + Chr2:38032342-38032361 None:intergenic 45.0%
CATTGCACCAAATAAGGCTG+AGG - Chr2:38031655-38031674 MsG0280008765.01.T01:CDS 45.0%
CGGTTGTGTGGTGAAATCAA+AGG - Chr2:38032123-38032142 MsG0280008765.01.T01:CDS 45.0%
GAAACTCTATTCAGAGGCTG+TGG - Chr2:38032258-38032277 MsG0280008765.01.T01:CDS 45.0%
GATGGTTCAACATAATCCGG+AGG + Chr2:38031497-38031516 None:intergenic 45.0%
GCAAGTAGGAGAAACAAGTG+AGG - Chr2:38030986-38031005 MsG0280008765.01.T01:CDS 45.0%
GCAGAAAGAGGATGTTAAGG+AGG - Chr2:38031745-38031764 MsG0280008765.01.T01:CDS 45.0%
GCCGAATAATATCATGGCGT+TGG - Chr2:38031400-38031419 MsG0280008765.01.T01:CDS 45.0%
GCTCAAGAGTTGAAGGAAGA+AGG - Chr2:38031086-38031105 MsG0280008765.01.T01:CDS 45.0%
GCTCATCTTGTGTTGAGGAT+TGG - Chr2:38032155-38032174 MsG0280008765.01.T01:CDS 45.0%
GGGGAAATGTGCATATGTCT+AGG - Chr2:38032371-38032390 MsG0280008765.01.T01:CDS 45.0%
GTCGTATGTGCGGAGTAATA+TGG - Chr2:38031199-38031218 MsG0280008765.01.T01:CDS 45.0%
TACCTCCTGCCATGTCAAAT+AGG + Chr2:38032315-38032334 None:intergenic 45.0%
TACGAAGGCTTTCTTGCTCT+TGG - Chr2:38032541-38032560 MsG0280008765.01.T01:CDS 45.0%
TCAAATTAGGGCTACCCGTA+TGG - Chr2:38032869-38032888 MsG0280008765.01.T01:CDS 45.0%
TCACCACACAACCGTTCTTA+GGG + Chr2:38032117-38032136 None:intergenic 45.0%
TGCTATATGCAGATGGGACT+TGG - Chr2:38031227-38031246 MsG0280008765.01.T01:CDS 45.0%
TTCACCACACAACCGTTCTT+AGG + Chr2:38032118-38032137 None:intergenic 45.0%
! AAAGCGCTCAAATTGCTTCC+GGG - Chr2:38031161-38031180 MsG0280008765.01.T01:CDS 45.0%
! ATGTGCATATGTCTAGGGCA+AGG - Chr2:38032377-38032396 MsG0280008765.01.T01:CDS 45.0%
! TATCATGGCGTTGGAGATCT+CGG - Chr2:38031409-38031428 MsG0280008765.01.T01:CDS 45.0%
! TCTTTCACTGCCTTTTCGGA+AGG + Chr2:38031530-38031549 None:intergenic 45.0%
! TTTTGACGTGCCTTCCGAAA+AGG - Chr2:38031517-38031536 MsG0280008765.01.T01:CDS 45.0%
!! AAGCTTTGTTGAAGAGAGCG+AGG - Chr2:38031312-38031331 MsG0280008765.01.T01:CDS 45.0%
!! GAAAGCGCTCAAATTGCTTC+CGG - Chr2:38031160-38031179 MsG0280008765.01.T01:CDS 45.0%
!! GAATTGAAGTGGGCTGAAAC+AGG - Chr2:38031983-38032002 MsG0280008765.01.T01:CDS 45.0%
!! TGATCGTCCTCAGCCTTATT+TGG + Chr2:38031665-38031684 None:intergenic 45.0%
ACAAGAACTGCTCCAAGGCT+TGG + Chr2:38031914-38031933 None:intergenic 50.0%
ATCAGATGAAACTGCAGCGC+TGG - Chr2:38032777-38032796 MsG0280008765.01.T01:CDS 50.0%
CAAGAACTGCTCCAAGGCTT+GGG + Chr2:38031913-38031932 None:intergenic 50.0%
CAAGGCCTATTTGACATGGC+AGG - Chr2:38032307-38032326 MsG0280008765.01.T01:CDS 50.0%
CACCACACAACCGTTCTTAG+GGG + Chr2:38032116-38032135 None:intergenic 50.0%
GCTGCGTGCTATATGCAGAT+GGG - Chr2:38031221-38031240 MsG0280008765.01.T01:CDS 50.0%
GCTGTATGAACGCTCACTTG+TGG - Chr2:38032843-38032862 MsG0280008765.01.T01:CDS 50.0%
TGGGCTGAAACAGGATCACA+GGG - Chr2:38031992-38032011 MsG0280008765.01.T01:CDS 50.0%
TTCCTTCAACTCTTGAGCCG+TGG + Chr2:38031084-38031103 None:intergenic 50.0%
! GAAGAGAGCGAGGTGTTATG+AGG - Chr2:38031322-38031341 MsG0280008765.01.T01:CDS 50.0%
! TCGGAAGGCACGTCAAAAGA+TGG + Chr2:38031515-38031534 None:intergenic 50.0%
CTCAGTGAAGCCTCCACTAC+CGG - Chr2:38032727-38032746 MsG0280008765.01.T01:CDS 55.0%
GAGGGATCTTCGAGGAGCTA+TGG - Chr2:38031127-38031146 MsG0280008765.01.T01:CDS 55.0%
GGCCTATTTGACATGGCAGG+AGG - Chr2:38032310-38032329 MsG0280008765.01.T01:CDS 55.0%
GGCTGCGTGCTATATGCAGA+TGG - Chr2:38031220-38031239 MsG0280008765.01.T01:CDS 55.0%
TCAGTGAAGCCTCCACTACC+GGG - Chr2:38032728-38032747 MsG0280008765.01.T01:CDS 55.0%
TGCCACGGCTCAAGAGTTGA+AGG - Chr2:38031079-38031098 MsG0280008765.01.T01:CDS 55.0%
TGCCCCTAAGAACGGTTGTG+TGG - Chr2:38032111-38032130 MsG0280008765.01.T01:CDS 55.0%
TGTGACAGGTTCCCAAGCCT+TGG - Chr2:38031899-38031918 MsG0280008765.01.T01:CDS 55.0%
! AGATGAAACTGCAGCGCTGG+CGG - Chr2:38032780-38032799 MsG0280008765.01.T01:CDS 55.0%
! GGCGTTGGAGATCTCGGATA+AGG - Chr2:38031415-38031434 MsG0280008765.01.T01:CDS 55.0%
! GTGGGCTGAAACAGGATCAC+AGG - Chr2:38031991-38032010 MsG0280008765.01.T01:CDS 55.0%
!! GGGACTTGGTGAGTACCCTA+GGG - Chr2:38031241-38031260 MsG0280008765.01.T01:CDS 55.0%
!! TGGGACTTGGTGAGTACCCT+AGG - Chr2:38031240-38031259 MsG0280008765.01.T01:CDS 55.0%
ACCTCTGTGGAGGGCCATGT+CGG + Chr2:38032631-38032650 None:intergenic 60.0%
TAAGCCATCCAGCCCGGTAG+TGG + Chr2:38032743-38032762 None:intergenic 60.0%
ACCGACATGGCCCTCCACAG+AGG - Chr2:38032627-38032646 MsG0280008765.01.T01:CDS 65.0%
TGAAGCCTCCACTACCGGGC+TGG - Chr2:38032732-38032751 MsG0280008765.01.T01:CDS 65.0%
!! CAGCGCTGGCGGCAAACATG+AGG - Chr2:38032791-38032810 MsG0280008765.01.T01:CDS 65.0%
! GCCATCCAGCCCGGTAGTGG+AGG + Chr2:38032740-38032759 None:intergenic 70.0%
! GCCTCCACTACCGGGCTGGA+TGG - Chr2:38032736-38032755 MsG0280008765.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 38030969 38033041 38030969 ID=MsG0280008765.01;Name=MsG0280008765.01
Chr2 mRNA 38030969 38033041 38030969 ID=MsG0280008765.01.T01;Parent=MsG0280008765.01;Name=MsG0280008765.01.T01;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|690
Chr2 exon 38030969 38033041 38030969 ID=MsG0280008765.01.T01:exon:1544;Parent=MsG0280008765.01.T01
Chr2 CDS 38030969 38033041 38030969 ID=MsG0280008765.01.T01:cds;Parent=MsG0280008765.01.T01
Gene Sequence

>MsG0280008765.01.T01

ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAACAAGTGAGGAAAATGGGAATCATAGTAACGACGGTGATAAAAGTCCGACTGCGTATGATAATGATACTTTGTTGTTTATTGCCACGGCTCAAGAGTTGAAGGAAGAAGGTAATAAGATGTTTCAAAAGAGGGATCTTCGAGGAGCTATGGTAAGGTATGAGAAAGCGCTCAAATTGCTTCCGGGAAATCATATAGATGTGTCGTATGTGCGGAGTAATATGGCTGCGTGCTATATGCAGATGGGACTTGGTGAGTACCCTAGGGCGATTAATGAATGCAATTTGGCTCTTGAAGTTACTCCAAAATATGGTAAAGCTTTGTTGAAGAGAGCGAGGTGTTATGAGGCTTTGAATAGATTGGATTTAGCATTGAGAGATGTTAGTGCTGTTTTGAAGATGGAGCCGAATAATATCATGGCGTTGGAGATCTCGGATAAGGTGAAAAGTGCACTTGAAGATAGAGGGTTAAGAGTAAATGATGAGAAAATTGAGTTGCCTCCGGATTATGTTGAACCATCTTTTGACGTGCCTTCCGAAAAGGCAGTGAAAGAAAAGAAACACAAGAAAAAGAGCAAAAAAGAGAAGGTGAAGGCTTCCGATGAAATTGTAGAGAAGCAAGCCGAGGAGAAACTAGAAGAGAAGAAAGAGGAGGACAACATTGCACCAAATAAGGCTGAGGACGATCATCTCAAAGAGAAAAAGCGTAATAAATCGAAAAAGAAGGCAGCCAAGGAAAAAATTGATAAGCAGAAAGAGGATGTTAAGGAGGTCAATGAAGAAAAAAGTAATGGTAGAAGCGTAGATGTACCTAAGAAAACAGCAAAACTTGTTTTTGGTGATGATATAAGATGGGCTCAATTGCCGGTTAATTGCAGCCTTTTTCAACTAAGAGAAATTATTTGTGACAGGTTCCCAAGCCTTGGAGCAGTTCTTGTCAAATATAGAGATCAAGAAGGTGACTTGATCACAATCACTTCGGATGAAGAATTGAAGTGGGCTGAAACAGGATCACAGGGTTCTATCCGACTGTATATAGTAGAAGCTAATCCTAATCACGATCCATTCTATGAGAAACTTCGTCTGAATGATGTGGAAAAGGTTGAAATGGATAATGCCCCTAAGAACGGTTGTGTGGTGAAATCAAAGGAAATTGTTAGCTCATCTTGTGTTGAGGATTGGATAATTCAGTTCGCAGAACTGTTCAAAAATCACGTTGGGTTTGAATCCGACAGATACTTAGACTTTCATGAACTTGGGATGAAACTCTATTCAGAGGCTGTGGAAGAGACAGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGGTAAGTTCCAAGAGATGACAGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCTAGGGCAAGGAAGAAAGTGTATTTAACTGAAGAAGATTCTTCTAGAGAGCATATGTATGAACAAATTAAAAGTTCGTATGAATGGGCGCAGAAAGAATATGCAAAAGCTGGAGAAAAATTTGAAGCAGCCATTAAAATTAAGTCAGATTTTTACGAAGGCTTTCTTGCTCTTGGTCAGCAACGATTCGAACAAGCGAAACTTTCTTGGTATTATGCACTCAGTAGTAATATAGATTTACCGACATGGCCCTCCACAGAGGTTCTTCATCTTTACAACAATGCTGAGGAGAATATGGAAAAAGGAATGCTGATATGGGAAGAATCGCAAGAGCAGCAGCTCAGTGAAGCCTCCACTACCGGGCTGGATGGCTTATTTAAAAATATGTCATCAGATGAAACTGCAGCGCTGGCGGCAAACATGAGGTCACAGATAAATCTCTTGTGGGGTACTATGCTGTATGAACGCTCACTTGTGGAATTCAAATTAGGGCTACCCGTATGGCATGAATCATTGGAAGCTGCGATTGAGAAGTTTGAACATGCAGGAGCTTCTCCAACAGATGTAGCTGTAATGTTGAAAAACCACTGTTCAAATAACACTGCTGTAGATGGTAATTTATCTTTCGTAGCTCAAAAGTTTTTACTTGAATAG

Protein sequence

>MsG0280008765.01.T01

MGKKKKQVGETSEENGNHSNDGDKSPTAYDNDTLLFIATAQELKEEGNKMFQKRDLRGAMVRYEKALKLLPGNHIDVSYVRSNMAACYMQMGLGEYPRAINECNLALEVTPKYGKALLKRARCYEALNRLDLALRDVSAVLKMEPNNIMALEISDKVKSALEDRGLRVNDEKIELPPDYVEPSFDVPSEKAVKEKKHKKKSKKEKVKASDEIVEKQAEEKLEEKKEEDNIAPNKAEDDHLKEKKRNKSKKKAAKEKIDKQKEDVKEVNEEKSNGRSVDVPKKTAKLVFGDDIRWAQLPVNCSLFQLREIICDRFPSLGAVLVKYRDQEGDLITITSDEELKWAETGSQGSIRLYIVEANPNHDPFYEKLRLNDVEKVEMDNAPKNGCVVKSKEIVSSSCVEDWIIQFAELFKNHVGFESDRYLDFHELGMKLYSEAVEETVTSEEAQGLFDMAGGKFQEMTALALFNWGNVHMSRARKKVYLTEEDSSREHMYEQIKSSYEWAQKEYAKAGEKFEAAIKIKSDFYEGFLALGQQRFEQAKLSWYYALSSNIDLPTWPSTEVLHLYNNAEENMEKGMLIWEESQEQQLSEASTTGLDGLFKNMSSDETAALAANMRSQINLLWGTMLYERSLVEFKLGLPVWHESLEAAIEKFEHAGASPTDVAVMLKNHCSNNTAVDGNLSFVAQKFLLE*