AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580030003.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030003.01.T01 MTR_5g096430 99.857 699 1 0 1 699 1 699 0.0 1419
MsG0580030003.01.T01 MTR_5g096460 99.857 699 1 0 1 699 1 699 0.0 1419
MsG0580030003.01.T01 MTR_6g452990 88.160 701 79 3 1 699 1 699 0.0 1186
MsG0580030003.01.T01 MTR_1g099840 84.692 699 92 2 1 699 6 689 0.0 1146
MsG0580030003.01.T01 MTR_1g025430 48.867 706 320 8 5 673 78 779 0.0 642
MsG0580030003.01.T01 MTR_5g097320 45.562 676 345 10 5 667 90 755 0.0 577
MsG0580030003.01.T01 MTR_0009s0390 45.634 710 354 13 5 698 82 775 0.0 577
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580030003.01.T01 AT5G56000 90.714 700 63 2 1 699 1 699 0.0 1205
MsG0580030003.01.T01 AT5G56030 92.286 700 52 2 1 699 1 699 0.0 1196
MsG0580030003.01.T01 AT5G56010 92.000 700 54 2 1 699 1 699 0.0 1194
MsG0580030003.01.T01 AT5G56030 88.615 729 52 3 1 699 1 728 0.0 1181
MsG0580030003.01.T01 AT5G52640 85.185 702 99 5 1 699 1 700 0.0 1148
MsG0580030003.01.T01 AT4G24190 50.356 703 310 8 5 672 77 775 0.0 643
MsG0580030003.01.T01 AT4G24190 50.356 703 310 8 5 672 77 775 0.0 642
MsG0580030003.01.T01 AT2G04030 47.485 676 329 11 5 668 77 738 0.0 597
MsG0580030003.01.T01 AT3G07770 45.495 677 346 10 5 668 95 761 0.0 590
MsG0580030003.01.T01 AT3G07770 45.495 677 346 10 5 668 95 761 0.0 590
MsG0580030003.01.T01 AT3G07770 45.495 677 346 10 5 668 95 761 0.0 590
MsG0580030003.01.T01 AT2G04030 47.033 674 332 11 5 668 77 735 0.0 588

Find 194 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGGACAGTTGGAGTTTA+AGG 0.160886 5:-104963838 MsG0580030003.01.T01:CDS
AATCTCCTTGTTACTGTAAA+AGG 0.195492 5:+104965591 None:intergenic
GAGACTGCTCTTCTTACTTC+TGG 0.243959 5:-104962829 MsG0580030003.01.T01:CDS
TTTCCTCAGCTCCTCCATTA+TGG 0.246479 5:+104962909 None:intergenic
ACAAGAGACGTTTGCTTTCC+AGG 0.252769 5:-104965650 MsG0580030003.01.T01:CDS
TTCTCAACCCAAAGAGAAAT+TGG 0.256773 5:+104964131 None:intergenic
TGAACAAGCAGAAGCCTATT+TGG 0.260701 5:-104963962 MsG0580030003.01.T01:CDS
TTAGCTATCCAATTTCTCTT+TGG 0.269210 5:-104964139 MsG0580030003.01.T01:CDS
TTCCTCAGCTCCTCCATTAT+GGG 0.271018 5:+104962910 None:intergenic
CTTGATGAGCCCAACACTTT+TGG 0.271765 5:-104962799 MsG0580030003.01.T01:CDS
TAGCTATCCAATTTCTCTTT+GGG 0.282969 5:-104964138 MsG0580030003.01.T01:CDS
ACTATCATTGATAGTGGAAT+TGG 0.289715 5:-104964624 MsG0580030003.01.T01:CDS
AATGACATTTACTACATTAC+TGG 0.294443 5:-104963366 MsG0580030003.01.T01:CDS
GTGTTAATTGTGACTATCTT+TGG 0.300881 5:-104962486 MsG0580030003.01.T01:three_prime_UTR
TCCTCCATTATGGGGTTCTC+AGG 0.306389 5:+104962919 None:intergenic
TCGTCCTTTGTGATCTCTTC+AGG 0.317508 5:+104963930 None:intergenic
TTGTTCCGCCATTGCCGATC+TGG 0.322186 5:+104965669 None:intergenic
TCAGGCTTCCTCATCCAAAT+AGG 0.324148 5:+104963948 None:intergenic
CAATGATTGGGAAGAGCATT+TGG 0.340719 5:-104963880 MsG0580030003.01.T01:CDS
TGAAGTAGTTTCTATTGTTT+AGG 0.357932 5:-104962640 MsG0580030003.01.T01:three_prime_UTR
TGTTTAGTGACTGGTGAGTA+TGG 0.358330 5:-104963039 MsG0580030003.01.T01:CDS
TCATGCTAACTTACCAGCTT+TGG 0.369152 5:+104964596 None:intergenic
GACATACAGCTTGATGTTGT+TGG 0.373069 5:+104963758 None:intergenic
GTCTGGTACCAAGGAATTCA+TGG 0.376590 5:-104964447 MsG0580030003.01.T01:CDS
ACAAGAGTCTCACCAATGAT+TGG 0.384273 5:-104963893 MsG0580030003.01.T01:CDS
ACATACAGCTTGATGTTGTT+GGG 0.394439 5:+104963759 None:intergenic
TGTTTGCTCATCGTAAGTTC+TGG 0.395191 5:-104962508 MsG0580030003.01.T01:three_prime_UTR
AAGGTGTTGTTGGTCTTGTC+AGG 0.401362 5:+104964648 None:intergenic
TCAACAGAACAAGATTCTTA+AGG 0.404319 5:-104963622 MsG0580030003.01.T01:CDS
GAAGAAGGAAGAGGAGGGTA+AGG 0.417477 5:-104964066 MsG0580030003.01.T01:CDS
GGTGCTGATGTTAGCATGAT+TGG 0.418135 5:-104964410 MsG0580030003.01.T01:CDS
CGAGGAAGAGAAGAAGGAAG+AGG 0.429375 5:-104964075 MsG0580030003.01.T01:CDS
GGTCATGTCATCACCACTCT+TGG 0.434025 5:+104963428 None:intergenic
GGAAGAGGAGGGTAAGGTTG+AGG 0.435286 5:-104964060 MsG0580030003.01.T01:CDS
CATGAAGGCACAGGCTTTGA+GGG 0.435413 5:-104962992 MsG0580030003.01.T01:CDS
ACAAGATTCTTAAGGTCATC+AGG 0.437555 5:-104963614 MsG0580030003.01.T01:CDS
CAACCCTGAGAACCCCATAA+TGG 0.440515 5:-104962923 MsG0580030003.01.T01:CDS
GTTAGCATGATTGGACAGTT+TGG 0.443805 5:-104964401 MsG0580030003.01.T01:CDS
TTTGTGTCAAAGAGATCAAA+AGG 0.446679 5:+104963789 None:intergenic
TTATATAATGAGTGTTTGCT+AGG 0.449983 5:+104965773 None:intergenic
CCTTGAGAAGCTTAGAAAGA+AGG 0.450145 5:-104963310 MsG0580030003.01.T01:CDS
CTAGTGTCTGCAACTAAAGA+AGG 0.450314 5:-104963210 MsG0580030003.01.T01:CDS
AATGATAGTCAAGGTGTTGT+TGG 0.456218 5:+104964638 None:intergenic
CAAGAGTCTCACCAATGATT+GGG 0.462392 5:-104963892 MsG0580030003.01.T01:CDS
CAAATGCTCTTCCCAATCAT+TGG 0.463958 5:+104963881 None:intergenic
TGGTCAGCTCAAGGAATTTG+AGG 0.468755 5:-104963241 MsG0580030003.01.T01:CDS
TTGAGGGATAGCAGCATGGC+TGG 0.470021 5:-104962976 MsG0580030003.01.T01:CDS
GGTGGTAACAATAACCTTCT+CGG 0.473999 5:+104964349 None:intergenic
ACCTTGACTATCATTGATAG+TGG 0.474059 5:-104964630 MsG0580030003.01.T01:CDS
TCATGAAGGCACAGGCTTTG+AGG 0.476598 5:-104962993 MsG0580030003.01.T01:CDS
TATGGCTTCCATGAATTCCT+TGG 0.477216 5:+104964439 None:intergenic
AGTGAATGACCCACCAGCTT+GGG 0.479426 5:+104964292 None:intergenic
TGAGGACGAGGAAGAGAAGA+AGG 0.480741 5:-104964081 MsG0580030003.01.T01:CDS
AGAATCAAGCTTGCTCTTGT+CGG 0.482487 5:+104964698 None:intergenic
CTTTCTAAGCTTCTCAAGGA+AGG 0.483028 5:+104963314 None:intergenic
AGATCAAAAGGTGCTCTCTT+CGG 0.483306 5:+104963801 None:intergenic
CAACTGGTGAAGCTCTTGGC+AGG 0.483720 5:-104964256 MsG0580030003.01.T01:CDS
CTTTGAAATTGCTGAGAACA+AGG 0.486596 5:-104963559 MsG0580030003.01.T01:CDS
GGAAGAGAAGAAGGAAGAGG+AGG 0.487208 5:-104964072 MsG0580030003.01.T01:CDS
TGTTAAGCACTTCTCTGTTG+AGG 0.488225 5:-104963856 MsG0580030003.01.T01:CDS
CATGTCATCACCACTCTTGG+TGG 0.488480 5:+104963431 None:intergenic
ATTCTGTCCTTCCTTCATCC+TGG 0.488551 5:+104963386 None:intergenic
GTTAAGCACTTCTCTGTTGA+GGG 0.489262 5:-104963855 MsG0580030003.01.T01:CDS
CAAAGCTTGCTGATTTGCTC+AGG 0.489387 5:-104963461 MsG0580030003.01.T01:CDS
AACATCAGCACCAGCAGCTA+TGG 0.489580 5:+104964421 None:intergenic
ATTTCTCTTGAAATGTTAAG+TGG 0.491469 5:+104963648 None:intergenic
CTTCTCTAAGAACTTGAAGC+TGG 0.492825 5:-104963511 MsG0580030003.01.T01:CDS
GGTGTCTAATGAATGGTCTT+TGG 0.492991 5:-104963985 MsG0580030003.01.T01:CDS
TAGCTTTGTGAAGGGTATTG+TGG 0.493429 5:-104963685 MsG0580030003.01.T01:CDS
GGAACGCCGTCTGAAGGACT+TGG 0.493605 5:-104964183 MsG0580030003.01.T01:CDS
CTTCTCTGTTGAGGGACAGT+TGG 0.494681 5:-104963847 MsG0580030003.01.T01:CDS
CAATCTTTGCAAGGTGATCA+AGG 0.496155 5:-104963124 MsG0580030003.01.T01:CDS
GTAGTTTCTATTGTTTAGGA+AGG 0.496454 5:-104962636 MsG0580030003.01.T01:three_prime_UTR
AGCTTCACCAGTTGTATCCC+TGG 0.498334 5:+104964265 None:intergenic
CTTGAGAAGCTTAGAAAGAA+GGG 0.499126 5:-104963309 MsG0580030003.01.T01:CDS
AGTAGATGAGGAGAAAGAAA+AGG 0.499471 5:-104964036 MsG0580030003.01.T01:CDS
GGGTGACAAGGTTGAGAAAG+TGG 0.499707 5:-104963094 MsG0580030003.01.T01:CDS
CTTCACAAAGCTAAGATACT+CGG 0.499785 5:+104963695 None:intergenic
TTCATCATCATTGTGCTTGG+TGG 0.500075 5:+104964331 None:intergenic
GGAATTGGAATGACCAAAGC+TGG 0.500501 5:-104964609 MsG0580030003.01.T01:intron
GATACAACTGGTGAAGCTCT+TGG 0.501895 5:-104964260 MsG0580030003.01.T01:CDS
CTAGGTACCATTGCTAGGTC+TGG 0.502477 5:-104964464 MsG0580030003.01.T01:CDS
TGCTTACCTTGTTGCCGAGA+AGG 0.502623 5:-104964363 MsG0580030003.01.T01:CDS
GAAGAGAAGAAGGAAGAGGA+GGG 0.502813 5:-104964071 MsG0580030003.01.T01:CDS
TCTCCTTGCTGTTTAGTGAC+TGG 0.506819 5:-104963048 MsG0580030003.01.T01:CDS
CAAGGTGATCAAGGAGGTGT+TGG 0.509412 5:-104963115 MsG0580030003.01.T01:CDS
TGCAGACATGCCACCATTGG+AGG 0.511199 5:-104962713 MsG0580030003.01.T01:CDS
GTGGGTCATTCACTGTGACC+AGG 0.512028 5:-104964283 MsG0580030003.01.T01:CDS
TTCTAAGCTTCTCAAGGAAG+GGG 0.514416 5:+104963316 None:intergenic
TAAGGTCATCAGGAAGAACT+TGG 0.516506 5:-104963604 MsG0580030003.01.T01:CDS
CCTCCATTATGGGGTTCTCA+GGG 0.520350 5:+104962920 None:intergenic
CTTCATGATCCTCTCCATGT+TGG 0.521693 5:+104963008 None:intergenic
ATGATTGGACAGTTTGGTGT+TGG 0.524590 5:-104964395 MsG0580030003.01.T01:CDS
TGATGCAGACATGCCACCAT+TGG 0.529417 5:-104962716 MsG0580030003.01.T01:CDS
TTTCTAAGCTTCTCAAGGAA+GGG 0.531468 5:+104963315 None:intergenic
ATCCTGTTGCCAAAAGTGTT+GGG 0.532827 5:+104962790 None:intergenic
ATTCACAGGATGCTCAAGCT+TGG 0.534491 5:-104962769 MsG0580030003.01.T01:CDS
TCAGCATCAGCTTCCTCCAA+TGG 0.535356 5:+104962700 None:intergenic
CATTGCTAGGTCTGGTACCA+AGG 0.535688 5:-104964456 MsG0580030003.01.T01:CDS
TTAAGGAGGTGTCTAATGAA+TGG 0.538054 5:-104963992 MsG0580030003.01.T01:CDS
AATCCTGTTGCCAAAAGTGT+TGG 0.544511 5:+104962789 None:intergenic
CTGTTCATCATCATTGTGCT+TGG 0.544768 5:+104964328 None:intergenic
TAAGGTTGAGGAAGTAGATG+AGG 0.545318 5:-104964048 MsG0580030003.01.T01:CDS
CGAGTATCTTAGCTTTGTGA+AGG 0.545418 5:-104963694 MsG0580030003.01.T01:CDS
CCTTCTTTCTAAGCTTCTCA+AGG 0.546242 5:+104963310 None:intergenic
TTCATGGAAGCCATAGCTGC+TGG 0.547466 5:-104964431 MsG0580030003.01.T01:CDS
GGTCAGCTCAAGGAATTTGA+GGG 0.548038 5:-104963240 MsG0580030003.01.T01:CDS
TCCTCAGCTCCTCCATTATG+GGG 0.548965 5:+104962911 None:intergenic
ACCAACAGCATATTCATCAA+TGG 0.549314 5:+104963260 None:intergenic
GTGTGGGAGTCCCAAGCTGG+TGG 0.550695 5:-104964302 MsG0580030003.01.T01:CDS
GGAGAGGATCATGAAGGCAC+AGG 0.554892 5:-104963001 MsG0580030003.01.T01:CDS
CAGCTTCAAGTTCTTAGAGA+AGG 0.556190 5:+104963512 None:intergenic
GGAAACGTGCTGATGCGGAC+AGG 0.560251 5:-104962891 MsG0580030003.01.T01:CDS
TATATAATGAGTGTTTGCTA+GGG 0.560774 5:+104965774 None:intergenic
TAAAATAACTCTCATCCTCA+AGG 0.561419 5:-104964228 MsG0580030003.01.T01:CDS
TAGTGACTGGTGAGTATGGT+TGG 0.563826 5:-104963035 MsG0580030003.01.T01:CDS
CCAGATTTGGTGAACAACCT+AGG 0.564348 5:-104964482 MsG0580030003.01.T01:intron
CAGTGAATGACCCACCAGCT+TGG 0.566153 5:+104964291 None:intergenic
GGACTATGTTACCAGGATGA+AGG 0.567325 5:-104963397 MsG0580030003.01.T01:CDS
GAAAGAGATTTCTGATGATG+AGG 0.568419 5:-104964099 MsG0580030003.01.T01:CDS
TCTTGAGGAACGCCGTCTGA+AGG 0.568654 5:-104964189 MsG0580030003.01.T01:CDS
CAAAAGTGTTGGGCTCATCA+AGG 0.569013 5:+104962800 None:intergenic
ATAATGTGAATGAACAACTC+TGG 0.569519 5:+104964672 None:intergenic
ACTGTGACCAGGGATACAAC+TGG 0.570046 5:-104964272 MsG0580030003.01.T01:CDS
AGAGGGAAGCAAGATGGAAG+AGG 0.571151 5:-104962674 MsG0580030003.01.T01:CDS
CAATAACCTTCTCGGCAACA+AGG 0.573151 5:+104964357 None:intergenic
TTCTCTAAGAACTTGAAGCT+GGG 0.573524 5:-104963510 MsG0580030003.01.T01:CDS
TGGGTCATTCACTGTGACCA+GGG 0.573714 5:-104964282 MsG0580030003.01.T01:CDS
CAAGGAGGTGTTGGGTGACA+AGG 0.575150 5:-104963106 MsG0580030003.01.T01:CDS
GGTAACATAGTCCTTGAGGC+TGG 0.577318 5:+104963407 None:intergenic
GGGATATGAAGTGATTTACA+TGG 0.578493 5:-104963289 MsG0580030003.01.T01:CDS
ACAACCTAGGTACCATTGCT+AGG 0.579010 5:-104964469 MsG0580030003.01.T01:CDS
TCTCAAACAGCAAGAGAACA+AGG 0.580225 5:+104962848 None:intergenic
TGTCGGTCAAGCCCTCAAAA+CGG 0.582332 5:+104964715 None:intergenic
CTATTGTTTAGGAAGGTGTG+AGG 0.582863 5:-104962629 MsG0580030003.01.T01:three_prime_UTR
AGCAGAAGCCTATTTGGATG+AGG 0.584932 5:-104963956 MsG0580030003.01.T01:CDS
ACTGGTGAAGCTCTTGGCAG+GGG 0.584964 5:-104964254 MsG0580030003.01.T01:CDS
GAAGTTGATTGATCTCAGCC+TGG 0.587212 5:+104965632 None:intergenic
AACTGGTGAAGCTCTTGGCA+GGG 0.587596 5:-104964255 MsG0580030003.01.T01:CDS
GCTGAGGAAACGTGCTGATG+CGG 0.588607 5:-104962896 MsG0580030003.01.T01:CDS
TTCACAAAGCTAAGATACTC+GGG 0.588682 5:+104963696 None:intergenic
CAGACCTAGCAATGGTACCT+AGG 0.590700 5:+104964465 None:intergenic
CATCACCACTCTTGGTGGAG+TGG 0.592725 5:+104963436 None:intergenic
GGCTTTGAGGGATAGCAGCA+TGG 0.597369 5:-104962980 MsG0580030003.01.T01:CDS
AGATTACAACAAGTTCTATG+AGG 0.599707 5:-104963535 MsG0580030003.01.T01:CDS
ATATGCTGTTGGTCAGCTCA+AGG 0.599835 5:-104963250 MsG0580030003.01.T01:CDS
GAAGTTCGACAATCTTTGCA+AGG 0.601872 5:-104963133 MsG0580030003.01.T01:CDS
GAAGCTGATGCTGATGCAGA+GGG 0.602230 5:-104962691 MsG0580030003.01.T01:CDS
ACCCCATAATGGAGGAGCTG+AGG 0.602360 5:-104962912 MsG0580030003.01.T01:CDS
TGATGCAGAGGGAAGCAAGA+TGG 0.604134 5:-104962680 MsG0580030003.01.T01:CDS
GATTTCTGATGATGAGGACG+AGG 0.608743 5:-104964093 MsG0580030003.01.T01:CDS
TCCTGGTAACATAGTCCTTG+AGG 0.608835 5:+104963403 None:intergenic
TAGTGTCTGCAACTAAAGAA+GGG 0.609080 5:-104963209 MsG0580030003.01.T01:CDS
GCCTCAAGGACTATGTTACC+AGG 0.610223 5:-104963404 MsG0580030003.01.T01:CDS
CATGTCAAGCAAGAAGACAA+TGG 0.611061 5:-104962950 MsG0580030003.01.T01:CDS
TATGTGTGGGAGTCCCAAGC+TGG 0.615041 5:-104964305 MsG0580030003.01.T01:CDS
TCCACTATCAATGATAGTCA+AGG 0.615433 5:+104964629 None:intergenic
GCCATTGATGAATATGCTGT+TGG 0.617134 5:-104963261 MsG0580030003.01.T01:CDS
GCTTGGTCTTAGCATTGATG+AGG 0.619021 5:-104962752 MsG0580030003.01.T01:CDS
CAACATGGAGAGGATCATGA+AGG 0.620851 5:-104963007 MsG0580030003.01.T01:CDS
GTTGAAACTTGACGAGAGTG+AGG 0.621123 5:-104963187 MsG0580030003.01.T01:CDS
TGAGCAAACAATAGCTACAC+TGG 0.624684 5:+104962521 None:intergenic
GGATCAACTTGAGTATCTTG+AGG 0.629396 5:-104964204 MsG0580030003.01.T01:CDS
GAGTATCTTAGCTTTGTGAA+GGG 0.631738 5:-104963693 MsG0580030003.01.T01:CDS
AGCAAGGAGAATCGACAACA+CGG 0.631988 5:+104963061 None:intergenic
AGGTACCACTCCACCAAGAG+TGG 0.636721 5:-104963441 MsG0580030003.01.T01:CDS
CAGGAATGACAAATCTGTCA+AGG 0.640894 5:-104962872 MsG0580030003.01.T01:CDS
GTATGGTTGGACTGCCAACA+TGG 0.641083 5:-104963022 MsG0580030003.01.T01:CDS
ACTCAAGTTGATCCTCCTTG+AGG 0.641638 5:+104964213 None:intergenic
TCTTAACCAAGTCCTTCAGA+CGG 0.644789 5:+104964177 None:intergenic
CCCTGAGAACCCCATAATGG+AGG 0.645508 5:-104962920 MsG0580030003.01.T01:CDS
TCTAAGCTTCTCAAGGAAGG+GGG 0.646828 5:+104963317 None:intergenic
TGTGGGAGTCCCAAGCTGGT+GGG 0.646830 5:-104964301 MsG0580030003.01.T01:CDS
GCATCAGCTTCCTCCAATGG+TGG 0.651686 5:+104962703 None:intergenic
AAGGTGATCAAGGAGGTGTT+GGG 0.654251 5:-104963114 MsG0580030003.01.T01:CDS
TGATGACATGACCAGCCTCA+AGG 0.657377 5:-104963418 MsG0580030003.01.T01:CDS
GTTGGACTGCCAACATGGAG+AGG 0.668192 5:-104963017 MsG0580030003.01.T01:CDS
ATTTCAGGAACGAAATAACA+AGG 0.670109 5:+104962410 None:intergenic
TATGTTACCAGGATGAAGGA+AGG 0.670222 5:-104963393 MsG0580030003.01.T01:CDS
GGAAGCTGATGCTGATGCAG+AGG 0.671926 5:-104962692 MsG0580030003.01.T01:CDS
ATGATGATGAACAGTATGTG+TGG 0.676362 5:-104964319 MsG0580030003.01.T01:CDS
AGTTGTCCATGATGAAAACA+CGG 0.681053 5:+104963733 None:intergenic
TCACCAGTCACTAAACAGCA+AGG 0.682332 5:+104963045 None:intergenic
GAAGGGTATTGTGGACTCTG+AGG 0.693168 5:-104963676 MsG0580030003.01.T01:CDS
CTTGAAGCTGGGTATCCATG+AGG 0.697436 5:-104963499 MsG0580030003.01.T01:CDS
AATAACTCTCATCCTCAAGG+AGG 0.699652 5:-104964225 MsG0580030003.01.T01:CDS
CTTGGTACCAGACCTAGCAA+TGG 0.700707 5:+104964457 None:intergenic
CAATTTCAAAGAAAAGCTCG+AGG 0.701411 5:+104963571 None:intergenic
TTTCATCATGGACAACTGTG+AGG 0.702798 5:-104963727 MsG0580030003.01.T01:CDS
GAAGCCTGAAGAGATCACAA+AGG 0.708675 5:-104963934 MsG0580030003.01.T01:CDS
TGATGATGAACAGTATGTGT+GGG 0.717373 5:-104964318 MsG0580030003.01.T01:CDS
GGTGCTACGAGCAAAGAACG+CGG 0.760872 5:+104962431 None:intergenic
TCTTTGCAAGGTGATCAAGG+AGG 0.803604 5:-104963121 MsG0580030003.01.T01:CDS
TGTCCATGATGAAAACACGG+CGG 0.827708 5:+104963736 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATTCAATTTCAATT+TGG + Chr5:104963030-104963049 None:intergenic 10.0%
!! TAATTGATTATATATTTGTT+AGG - Chr5:104962789-104962808 MsG0580030003.01.T01:CDS 10.0%
!! TTAAAATTCAATTTCAATTT+GGG + Chr5:104963029-104963048 None:intergenic 10.0%
!!! AAATTGAATTTTAATTAGTT+CGG - Chr5:104963035-104963054 MsG0580030003.01.T01:CDS 10.0%
!!! AATTGATTATATATTTGTTA+GGG - Chr5:104962790-104962809 MsG0580030003.01.T01:CDS 10.0%
!!! GTATTATTTTATCAATTTTA+GGG - Chr5:104962759-104962778 MsG0580030003.01.T01:CDS 10.0%
!!! TTGTCTTTATTTTTAAATTT+TGG - Chr5:104965602-104965621 MsG0580030003.01.T01:CDS 10.0%
!! ACTTTCTTTCAAAAAATTAA+AGG + Chr5:104963264-104963283 None:intergenic 15.0%
!! TATAATTGTTACTAATACTT+TGG - Chr5:104963328-104963347 MsG0580030003.01.T01:CDS 15.0%
!!! AATTCAATTCTAAAACTAAA+AGG + Chr5:104963232-104963251 None:intergenic 15.0%
!!! ATTCAATTCTAAAACTAAAA+GGG + Chr5:104963231-104963250 None:intergenic 15.0%
!!! GGTATTATTTTATCAATTTT+AGG - Chr5:104962758-104962777 MsG0580030003.01.T01:CDS 15.0%
!!! TAACTCTTTAATTTTTTGTA+TGG - Chr5:104963193-104963212 MsG0580030003.01.T01:CDS 15.0%
!!! TGATTTTGATGAATTTTTTT+CGG - Chr5:104962721-104962740 MsG0580030003.01.T01:CDS 15.0%
!!! TTTTTTCTTTTTGTTTCTTA+GGG - Chr5:104962669-104962688 MsG0580030003.01.T01:CDS 15.0%
!! AAAAAATAGATCACATGATT+AGG + Chr5:104963078-104963097 None:intergenic 20.0%
!! AAAAATAGATCACATGATTA+GGG + Chr5:104963077-104963096 None:intergenic 20.0%
!! GTTGTTCTGATTATTATATT+GGG - Chr5:104963416-104963435 MsG0580030003.01.T01:CDS 20.0%
!! TCAACTATGAAACATATATT+CGG + Chr5:104962980-104962999 None:intergenic 20.0%
!! TGTTGTTCTGATTATTATAT+TGG - Chr5:104963415-104963434 MsG0580030003.01.T01:CDS 20.0%
!!! CTTTTTTCTTTTTGTTTCTT+AGG - Chr5:104962668-104962687 MsG0580030003.01.T01:CDS 20.0%
!!! TTTTTGAAAGAAAGTTGTTT+GGG - Chr5:104963269-104963288 MsG0580030003.01.T01:CDS 20.0%
!!! TTTTTTGAAAGAAAGTTGTT+TGG - Chr5:104963268-104963287 MsG0580030003.01.T01:CDS 20.0%
! AATGACATTTACTACATTAC+TGG - Chr5:104964816-104964835 MsG0580030003.01.T01:intron 25.0%
! AATGATGATTTAGTTGTTGT+GGG - Chr5:104963386-104963405 MsG0580030003.01.T01:CDS 25.0%
! ATTTCTCTTGAAATGTTAAG+TGG + Chr5:104964537-104964556 None:intergenic 25.0%
! GAAGAAAAAGAAGAAGATTA+AGG - Chr5:104964173-104964192 MsG0580030003.01.T01:CDS 25.0%
! TAATGATGATTTAGTTGTTG+TGG - Chr5:104963385-104963404 MsG0580030003.01.T01:CDS 25.0%
! TGAAGTAGTTTCTATTGTTT+AGG - Chr5:104965542-104965561 MsG0580030003.01.T01:intron 25.0%
! TTATATAATGAGTGTTTGCT+AGG + Chr5:104962412-104962431 None:intergenic 25.0%
!! GTTATTGTCAATGTTATTTG+AGG - Chr5:104963305-104963324 MsG0580030003.01.T01:CDS 25.0%
!! TATATAATGAGTGTTTGCTA+GGG + Chr5:104962411-104962430 None:intergenic 25.0%
!! TTTTATTAGACGCAATTTTC+TGG - Chr5:104965637-104965656 MsG0580030003.01.T01:CDS 25.0%
!! TTTTCGGTTATGATTCTTAT+TGG - Chr5:104962737-104962756 MsG0580030003.01.T01:CDS 25.0%
!!! ATGATTTGTTAGTCATGTTT+AGG - Chr5:104962879-104962898 MsG0580030003.01.T01:CDS 25.0%
!!! GTTTTAGAATTGAATTTGCA+TGG - Chr5:104963236-104963255 MsG0580030003.01.T01:CDS 25.0%
AAAAAGAAAAAAGAGCGAAG+AGG + Chr5:104962661-104962680 None:intergenic 30.0%
AATCTCCTTGTTACTGTAAA+AGG + Chr5:104962594-104962613 None:intergenic 30.0%
AGATTACAACAAGTTCTATG+AGG - Chr5:104964647-104964666 MsG0580030003.01.T01:CDS 30.0%
ATAATGTGAATGAACAACTC+TGG + Chr5:104963513-104963532 None:intergenic 30.0%
ATTTCAGGAACGAAATAACA+AGG + Chr5:104965775-104965794 None:intergenic 30.0%
CTGTATTTATGTTCCAGATT+TGG - Chr5:104963687-104963706 MsG0580030003.01.T01:CDS 30.0%
GAAAAAGAAGAAGATTAAGG+AGG - Chr5:104964176-104964195 MsG0580030003.01.T01:CDS 30.0%
GTAGTTTCTATTGTTTAGGA+AGG - Chr5:104965546-104965565 MsG0580030003.01.T01:intron 30.0%
GTGTTAATTGTGACTATCTT+TGG - Chr5:104965696-104965715 MsG0580030003.01.T01:five_prime_UTR 30.0%
TAAAATAACTCTCATCCTCA+AGG - Chr5:104963954-104963973 MsG0580030003.01.T01:CDS 30.0%
TAGCTATCCAATTTCTCTTT+GGG - Chr5:104964044-104964063 MsG0580030003.01.T01:CDS 30.0%
TCAACAGAACAAGATTCTTA+AGG - Chr5:104964560-104964579 MsG0580030003.01.T01:intron 30.0%
TGAGGATGAAAAGAAAAAGA+TGG - Chr5:104965013-104965032 MsG0580030003.01.T01:intron 30.0%
TTAGCTATCCAATTTCTCTT+TGG - Chr5:104964043-104964062 MsG0580030003.01.T01:CDS 30.0%
TTTGTGTCAAAGAGATCAAA+AGG + Chr5:104964396-104964415 None:intergenic 30.0%
! TACTGTGTAACATTTTCACT+TGG - Chr5:104963101-104963120 MsG0580030003.01.T01:CDS 30.0%
!! ACTATCATTGATAGTGGAAT+TGG - Chr5:104963558-104963577 MsG0580030003.01.T01:CDS 30.0%
!! ATACTTTGGAATATCAGTGT+TGG - Chr5:104963342-104963361 MsG0580030003.01.T01:CDS 30.0%
!! GAATATCAGTGTTGGATTTT+TGG - Chr5:104963350-104963369 MsG0580030003.01.T01:CDS 30.0%
ACAAGATTCTTAAGGTCATC+AGG - Chr5:104964568-104964587 MsG0580030003.01.T01:intron 35.0%
ACATACAGCTTGATGTTGTT+GGG + Chr5:104964426-104964445 None:intergenic 35.0%
ACCAACAGCATATTCATCAA+TGG + Chr5:104964925-104964944 None:intergenic 35.0%
ACCTTGACTATCATTGATAG+TGG - Chr5:104963552-104963571 MsG0580030003.01.T01:CDS 35.0%
AGTAGATGAGGAGAAAGAAA+AGG - Chr5:104964146-104964165 MsG0580030003.01.T01:CDS 35.0%
AGTTGTCCATGATGAAAACA+CGG + Chr5:104964452-104964471 None:intergenic 35.0%
ATATTGGGATGCTGTAATGT+AGG - Chr5:104963431-104963450 MsG0580030003.01.T01:CDS 35.0%
CAATTTCAAAGAAAAGCTCG+AGG + Chr5:104964614-104964633 None:intergenic 35.0%
CATAAACCAATTACAGACTC+AGG + Chr5:104963619-104963638 None:intergenic 35.0%
CTTCACAAAGCTAAGATACT+CGG + Chr5:104964490-104964509 None:intergenic 35.0%
CTTGAGAAGCTTAGAAAGAA+GGG - Chr5:104964873-104964892 MsG0580030003.01.T01:intron 35.0%
GAAAAAGATGGAAGAACAGA+AGG - Chr5:104965025-104965044 MsG0580030003.01.T01:intron 35.0%
GGGATATGAAGTGATTTACA+TGG - Chr5:104964893-104964912 MsG0580030003.01.T01:intron 35.0%
TAGTGTCTGCAACTAAAGAA+GGG - Chr5:104964973-104964992 MsG0580030003.01.T01:intron 35.0%
TCCACTATCAATGATAGTCA+AGG + Chr5:104963556-104963575 None:intergenic 35.0%
TTCACAAAGCTAAGATACTC+GGG + Chr5:104964489-104964508 None:intergenic 35.0%
TTCTCAACCCAAAGAGAAAT+TGG + Chr5:104964054-104964073 None:intergenic 35.0%
TTTCTAAGCTTCTCAAGGAA+GGG + Chr5:104964870-104964889 None:intergenic 35.0%
! ATGATGATGAACAGTATGTG+TGG - Chr5:104963863-104963882 MsG0580030003.01.T01:CDS 35.0%
! CAACACCTTTTACAGTAACA+AGG - Chr5:104962586-104962605 MsG0580030003.01.T01:three_prime_UTR 35.0%
! CTTTTTCCTGAGTCTGTAAT+TGG - Chr5:104963610-104963629 MsG0580030003.01.T01:CDS 35.0%
! GAAAGAGATTTCTGATGATG+AGG - Chr5:104964083-104964102 MsG0580030003.01.T01:CDS 35.0%
! TGATGATGAACAGTATGTGT+GGG - Chr5:104963864-104963883 MsG0580030003.01.T01:CDS 35.0%
! TTCTCTAAGAACTTGAAGCT+GGG - Chr5:104964672-104964691 MsG0580030003.01.T01:CDS 35.0%
! TTGGATAAGATCCGTTTTGA+GGG - Chr5:104963456-104963475 MsG0580030003.01.T01:CDS 35.0%
! TTTGGATAAGATCCGTTTTG+AGG - Chr5:104963455-104963474 MsG0580030003.01.T01:CDS 35.0%
!! AATGATAGTCAAGGTGTTGT+TGG + Chr5:104963547-104963566 None:intergenic 35.0%
!! CTTTGAAATTGCTGAGAACA+AGG - Chr5:104964623-104964642 MsG0580030003.01.T01:CDS 35.0%
!! GAGTATCTTAGCTTTGTGAA+GGG - Chr5:104964489-104964508 MsG0580030003.01.T01:intron 35.0%
!! TTAAGGAGGTGTCTAATGAA+TGG - Chr5:104964190-104964209 MsG0580030003.01.T01:CDS 35.0%
!!! TCTTGTTTTGAGAATCCTCA+TGG + Chr5:104964701-104964720 None:intergenic 35.0%
AATAACTCTCATCCTCAAGG+AGG - Chr5:104963957-104963976 MsG0580030003.01.T01:CDS 40.0%
ACAAGAGTCTCACCAATGAT+TGG - Chr5:104964289-104964308 MsG0580030003.01.T01:CDS 40.0%
CAAATGCTCTTCCCAATCAT+TGG + Chr5:104964304-104964323 None:intergenic 40.0%
CAAGAGTCTCACCAATGATT+GGG - Chr5:104964290-104964309 MsG0580030003.01.T01:CDS 40.0%
CAATCTTTGCAAGGTGATCA+AGG - Chr5:104965058-104965077 MsG0580030003.01.T01:intron 40.0%
CAGGAATGACAAATCTGTCA+AGG - Chr5:104965310-104965329 MsG0580030003.01.T01:intron 40.0%
CATGTCAAGCAAGAAGACAA+TGG - Chr5:104965232-104965251 MsG0580030003.01.T01:intron 40.0%
CCTTCTTTCTAAGCTTCTCA+AGG + Chr5:104964875-104964894 None:intergenic 40.0%
CCTTGAGAAGCTTAGAAAGA+AGG - Chr5:104964872-104964891 MsG0580030003.01.T01:intron 40.0%
CTAGTGTCTGCAACTAAAGA+AGG - Chr5:104964972-104964991 MsG0580030003.01.T01:intron 40.0%
CTCTGCGAAAAAAACCAGAT+CGG - Chr5:104962499-104962518 MsG0580030003.01.T01:three_prime_UTR 40.0%
CTGTTCATCATCATTGTGCT+TGG + Chr5:104963857-104963876 None:intergenic 40.0%
CTTTCTAAGCTTCTCAAGGA+AGG + Chr5:104964871-104964890 None:intergenic 40.0%
GAAAAAAACCAGATCGGCAA+TGG - Chr5:104962505-104962524 MsG0580030003.01.T01:three_prime_UTR 40.0%
GAAGAGGAAGAAGCTTACAT+CGG + Chr5:104962645-104962664 None:intergenic 40.0%
GAAGTTCGACAATCTTTGCA+AGG - Chr5:104965049-104965068 MsG0580030003.01.T01:intron 40.0%
GACATACAGCTTGATGTTGT+TGG + Chr5:104964427-104964446 None:intergenic 40.0%
GCCATTGATGAATATGCTGT+TGG - Chr5:104964921-104964940 MsG0580030003.01.T01:intron 40.0%
GGATCAACTTGAGTATCTTG+AGG - Chr5:104963978-104963997 MsG0580030003.01.T01:CDS 40.0%
GGTGGTAACAATAACCTTCT+CGG + Chr5:104963836-104963855 None:intergenic 40.0%
GGTGTCTAATGAATGGTCTT+TGG - Chr5:104964197-104964216 MsG0580030003.01.T01:CDS 40.0%
GTTAAGCACTTCTCTGTTGA+GGG - Chr5:104964327-104964346 MsG0580030003.01.T01:CDS 40.0%
GTTAGCATGATTGGACAGTT+TGG - Chr5:104963781-104963800 MsG0580030003.01.T01:CDS 40.0%
TAAGGTCATCAGGAAGAACT+TGG - Chr5:104964578-104964597 MsG0580030003.01.T01:intron 40.0%
TAAGGTTGAGGAAGTAGATG+AGG - Chr5:104964134-104964153 MsG0580030003.01.T01:CDS 40.0%
TATGGCTTCCATGAATTCCT+TGG + Chr5:104963746-104963765 None:intergenic 40.0%
TATGTTACCAGGATGAAGGA+AGG - Chr5:104964789-104964808 MsG0580030003.01.T01:intron 40.0%
TCATGCTAACTTACCAGCTT+TGG + Chr5:104963589-104963608 None:intergenic 40.0%
TCTCAAACAGCAAGAGAACA+AGG + Chr5:104965337-104965356 None:intergenic 40.0%
TCTTAACCAAGTCCTTCAGA+CGG + Chr5:104964008-104964027 None:intergenic 40.0%
TGAACAAGCAGAAGCCTATT+TGG - Chr5:104964220-104964239 MsG0580030003.01.T01:CDS 40.0%
TGAGCAAACAATAGCTACAC+TGG + Chr5:104965664-104965683 None:intergenic 40.0%
TGTTAAGCACTTCTCTGTTG+AGG - Chr5:104964326-104964345 MsG0580030003.01.T01:CDS 40.0%
TGTTTAGTGACTGGTGAGTA+TGG - Chr5:104965143-104965162 MsG0580030003.01.T01:intron 40.0%
TGTTTGCTCATCGTAAGTTC+TGG - Chr5:104965674-104965693 MsG0580030003.01.T01:exon 40.0%
TTCATCATCATTGTGCTTGG+TGG + Chr5:104963854-104963873 None:intergenic 40.0%
TTCTAAGCTTCTCAAGGAAG+GGG + Chr5:104964869-104964888 None:intergenic 40.0%
TTTCATCATGGACAACTGTG+AGG - Chr5:104964455-104964474 MsG0580030003.01.T01:CDS 40.0%
! AATCCTGTTGCCAAAAGTGT+TGG + Chr5:104965396-104965415 None:intergenic 40.0%
! AGAATCAAGCTTGCTCTTGT+CGG + Chr5:104963487-104963506 None:intergenic 40.0%
! CAGCTTCAAGTTCTTAGAGA+AGG + Chr5:104964673-104964692 None:intergenic 40.0%
! CTATTGTTTAGGAAGGTGTG+AGG - Chr5:104965553-104965572 MsG0580030003.01.T01:intron 40.0%
! CTTCTCTAAGAACTTGAAGC+TGG - Chr5:104964671-104964690 MsG0580030003.01.T01:CDS 40.0%
!! AGATCAAAAGGTGCTCTCTT+CGG + Chr5:104964384-104964403 None:intergenic 40.0%
!! ATCCTGTTGCCAAAAGTGTT+GGG + Chr5:104965395-104965414 None:intergenic 40.0%
!! ATGATTGGACAGTTTGGTGT+TGG - Chr5:104963787-104963806 MsG0580030003.01.T01:CDS 40.0%
!! CAATGATTGGGAAGAGCATT+TGG - Chr5:104964302-104964321 MsG0580030003.01.T01:CDS 40.0%
!! CGAGTATCTTAGCTTTGTGA+AGG - Chr5:104964488-104964507 MsG0580030003.01.T01:intron 40.0%
!! TAGCTTTGTGAAGGGTATTG+TGG - Chr5:104964497-104964516 MsG0580030003.01.T01:intron 40.0%
AAAAACCAGATCGGCAATGG+CGG - Chr5:104962508-104962527 MsG0580030003.01.T01:three_prime_UTR 45.0%
ACAACCTAGGTACCATTGCT+AGG - Chr5:104963713-104963732 MsG0580030003.01.T01:CDS 45.0%
ACAAGAGACGTTTGCTTTCC+AGG - Chr5:104962532-104962551 MsG0580030003.01.T01:three_prime_UTR 45.0%
AGCAAGGAGAATCGACAACA+CGG + Chr5:104965124-104965143 None:intergenic 45.0%
AGCAGAAGCCTATTTGGATG+AGG - Chr5:104964226-104964245 MsG0580030003.01.T01:CDS 45.0%
ATATGCTGTTGGTCAGCTCA+AGG - Chr5:104964932-104964951 MsG0580030003.01.T01:intron 45.0%
ATTCACAGGATGCTCAAGCT+TGG - Chr5:104965413-104965432 MsG0580030003.01.T01:intron 45.0%
ATTCTGTCCTTCCTTCATCC+TGG + Chr5:104964799-104964818 None:intergenic 45.0%
CAACATGGAGAGGATCATGA+AGG - Chr5:104965175-104965194 MsG0580030003.01.T01:intron 45.0%
CAATAACCTTCTCGGCAACA+AGG + Chr5:104963828-104963847 None:intergenic 45.0%
CCTAGGTTGTTCACCAAATC+TGG + Chr5:104963703-104963722 None:intergenic 45.0%
CTTCATGATCCTCTCCATGT+TGG + Chr5:104965177-104965196 None:intergenic 45.0%
GAAGAGAAGAAGGAAGAGGA+GGG - Chr5:104964111-104964130 MsG0580030003.01.T01:CDS 45.0%
GAAGCCTGAAGAGATCACAA+AGG - Chr5:104964248-104964267 MsG0580030003.01.T01:CDS 45.0%
GAGACTGCTCTTCTTACTTC+TGG - Chr5:104965353-104965372 MsG0580030003.01.T01:intron 45.0%
GATACAACTGGTGAAGCTCT+TGG - Chr5:104963922-104963941 MsG0580030003.01.T01:CDS 45.0%
GGAATTGGAATGACCAAAGC+TGG - Chr5:104963573-104963592 MsG0580030003.01.T01:CDS 45.0%
GGACTATGTTACCAGGATGA+AGG - Chr5:104964785-104964804 MsG0580030003.01.T01:intron 45.0%
GGATGCTGTAATGTAGGCTT+TGG - Chr5:104963437-104963456 MsG0580030003.01.T01:CDS 45.0%
GGTCAGCTCAAGGAATTTGA+GGG - Chr5:104964942-104964961 MsG0580030003.01.T01:intron 45.0%
GTCTGGTACCAAGGAATTCA+TGG - Chr5:104963735-104963754 MsG0580030003.01.T01:CDS 45.0%
GTTGAAACTTGACGAGAGTG+AGG - Chr5:104964995-104965014 MsG0580030003.01.T01:intron 45.0%
TAGTGACTGGTGAGTATGGT+TGG - Chr5:104965147-104965166 MsG0580030003.01.T01:intron 45.0%
TCACCAGTCACTAAACAGCA+AGG + Chr5:104965140-104965159 None:intergenic 45.0%
TCAGGCTTCCTCATCCAAAT+AGG + Chr5:104964237-104964256 None:intergenic 45.0%
TCCTGGTAACATAGTCCTTG+AGG + Chr5:104964782-104964801 None:intergenic 45.0%
TCGTCCTTTGTGATCTCTTC+AGG + Chr5:104964255-104964274 None:intergenic 45.0%
TCTAAGCTTCTCAAGGAAGG+GGG + Chr5:104964868-104964887 None:intergenic 45.0%
TCTTTGCAAGGTGATCAAGG+AGG - Chr5:104965061-104965080 MsG0580030003.01.T01:intron 45.0%
TGAGGGACAGTTGGAGTTTA+AGG - Chr5:104964344-104964363 MsG0580030003.01.T01:CDS 45.0%
TGGTCAGCTCAAGGAATTTG+AGG - Chr5:104964941-104964960 MsG0580030003.01.T01:intron 45.0%
TGTCCATGATGAAAACACGG+CGG + Chr5:104964449-104964468 None:intergenic 45.0%
TTCCTCAGCTCCTCCATTAT+GGG + Chr5:104965275-104965294 None:intergenic 45.0%
TTTCCTCAGCTCCTCCATTA+TGG + Chr5:104965276-104965295 None:intergenic 45.0%
! CTTGATGAGCCCAACACTTT+TGG - Chr5:104965383-104965402 MsG0580030003.01.T01:intron 45.0%
! CTTTTGGCAACAGGATTCAC+AGG - Chr5:104965399-104965418 MsG0580030003.01.T01:intron 45.0%
! GAAGTTGATTGATCTCAGCC+TGG + Chr5:104962553-104962572 None:intergenic 45.0%
! GATTTCTGATGATGAGGACG+AGG - Chr5:104964089-104964108 MsG0580030003.01.T01:CDS 45.0%
!! AAGGTGATCAAGGAGGTGTT+GGG - Chr5:104965068-104965087 MsG0580030003.01.T01:intron 45.0%
!! AAGGTGTTGTTGGTCTTGTC+AGG + Chr5:104963537-104963556 None:intergenic 45.0%
!! ACTCAAGTTGATCCTCCTTG+AGG + Chr5:104963972-104963991 None:intergenic 45.0%
!! CAAAAGTGTTGGGCTCATCA+AGG + Chr5:104965385-104965404 None:intergenic 45.0%
!! CAAAGCTTGCTGATTTGCTC+AGG - Chr5:104964721-104964740 MsG0580030003.01.T01:CDS 45.0%
!! CCAGATTTGGTGAACAACCT+AGG - Chr5:104963700-104963719 MsG0580030003.01.T01:CDS 45.0%
!! GCTTGGTCTTAGCATTGATG+AGG - Chr5:104965430-104965449 MsG0580030003.01.T01:intron 45.0%
!! GGTGCTGATGTTAGCATGAT+TGG - Chr5:104963772-104963791 MsG0580030003.01.T01:CDS 45.0%
!! TCTCCTTGCTGTTTAGTGAC+TGG - Chr5:104965134-104965153 MsG0580030003.01.T01:intron 45.0%
AACATCAGCACCAGCAGCTA+TGG + Chr5:104963764-104963783 None:intergenic 50.0%
AACTGGTGAAGCTCTTGGCA+GGG - Chr5:104963927-104963946 MsG0580030003.01.T01:CDS 50.0%
ACTGTGACCAGGGATACAAC+TGG - Chr5:104963910-104963929 MsG0580030003.01.T01:CDS 50.0%
AGAGGGAAGCAAGATGGAAG+AGG - Chr5:104965508-104965527 MsG0580030003.01.T01:intron 50.0%
AGCTTCACCAGTTGTATCCC+TGG + Chr5:104963920-104963939 None:intergenic 50.0%
AGTGAATGACCCACCAGCTT+GGG + Chr5:104963893-104963912 None:intergenic 50.0%
CAACCCTGAGAACCCCATAA+TGG - Chr5:104965259-104965278 MsG0580030003.01.T01:intron 50.0%
CAGACCTAGCAATGGTACCT+AGG + Chr5:104963720-104963739 None:intergenic 50.0%
CATGTCATCACCACTCTTGG+TGG + Chr5:104964754-104964773 None:intergenic 50.0%
CATTGCTAGGTCTGGTACCA+AGG - Chr5:104963726-104963745 MsG0580030003.01.T01:CDS 50.0%
CCTCCATTATGGGGTTCTCA+GGG + Chr5:104965265-104965284 None:intergenic 50.0%
CGAGGAAGAGAAGAAGGAAG+AGG - Chr5:104964107-104964126 MsG0580030003.01.T01:CDS 50.0%
CTAGGTACCATTGCTAGGTC+TGG - Chr5:104963718-104963737 MsG0580030003.01.T01:CDS 50.0%
CTTCTCTGTTGAGGGACAGT+TGG - Chr5:104964335-104964354 MsG0580030003.01.T01:CDS 50.0%
CTTGAAGCTGGGTATCCATG+AGG - Chr5:104964683-104964702 MsG0580030003.01.T01:CDS 50.0%
CTTGGTACCAGACCTAGCAA+TGG + Chr5:104963728-104963747 None:intergenic 50.0%
GAAGAAGGAAGAGGAGGGTA+AGG - Chr5:104964116-104964135 MsG0580030003.01.T01:CDS 50.0%
GAAGCTGATGCTGATGCAGA+GGG - Chr5:104965491-104965510 MsG0580030003.01.T01:intron 50.0%
GCCTCAAGGACTATGTTACC+AGG - Chr5:104964778-104964797 MsG0580030003.01.T01:intron 50.0%
GGAAGAGAAGAAGGAAGAGG+AGG - Chr5:104964110-104964129 MsG0580030003.01.T01:CDS 50.0%
GGGTGACAAGGTTGAGAAAG+TGG - Chr5:104965088-104965107 MsG0580030003.01.T01:intron 50.0%
GGTAACATAGTCCTTGAGGC+TGG + Chr5:104964778-104964797 None:intergenic 50.0%
GGTCATGTCATCACCACTCT+TGG + Chr5:104964757-104964776 None:intergenic 50.0%
GTATGGTTGGACTGCCAACA+TGG - Chr5:104965160-104965179 MsG0580030003.01.T01:intron 50.0%
TCAGCATCAGCTTCCTCCAA+TGG + Chr5:104965485-104965504 None:intergenic 50.0%
TCCTCAGCTCCTCCATTATG+GGG + Chr5:104965274-104965293 None:intergenic 50.0%
TCCTCCATTATGGGGTTCTC+AGG + Chr5:104965266-104965285 None:intergenic 50.0%
TGAGGACGAGGAAGAGAAGA+AGG - Chr5:104964101-104964120 MsG0580030003.01.T01:CDS 50.0%
TGATGACATGACCAGCCTCA+AGG - Chr5:104964764-104964783 MsG0580030003.01.T01:intron 50.0%
TGATGCAGACATGCCACCAT+TGG - Chr5:104965466-104965485 MsG0580030003.01.T01:intron 50.0%
TGATGCAGAGGGAAGCAAGA+TGG - Chr5:104965502-104965521 MsG0580030003.01.T01:intron 50.0%
TGCTTACCTTGTTGCCGAGA+AGG - Chr5:104963819-104963838 MsG0580030003.01.T01:CDS 50.0%
TGGGTCATTCACTGTGACCA+GGG - Chr5:104963900-104963919 MsG0580030003.01.T01:CDS 50.0%
TGTCGGTCAAGCCCTCAAAA+CGG + Chr5:104963470-104963489 None:intergenic 50.0%
TTCATGGAAGCCATAGCTGC+TGG - Chr5:104963751-104963770 MsG0580030003.01.T01:CDS 50.0%
! AGCCCAACACTTTTGGCAAC+AGG - Chr5:104965390-104965409 MsG0580030003.01.T01:intron 50.0%
! CAAGGTGATCAAGGAGGTGT+TGG - Chr5:104965067-104965086 MsG0580030003.01.T01:intron 50.0%
! CATGAAGGCACAGGCTTTGA+GGG - Chr5:104965190-104965209 MsG0580030003.01.T01:intron 50.0%
! TCATGAAGGCACAGGCTTTG+AGG - Chr5:104965189-104965208 MsG0580030003.01.T01:intron 50.0%
! TGTCCGCCGTGTTTTCATCA+TGG - Chr5:104964443-104964462 MsG0580030003.01.T01:CDS 50.0%
!! GAAGGGTATTGTGGACTCTG+AGG - Chr5:104964506-104964525 MsG0580030003.01.T01:intron 50.0%
ACTGGTGAAGCTCTTGGCAG+GGG - Chr5:104963928-104963947 MsG0580030003.01.T01:CDS 55.0%
AGGTACCACTCCACCAAGAG+TGG - Chr5:104964741-104964760 MsG0580030003.01.T01:intron 55.0%
CAACTGGTGAAGCTCTTGGC+AGG - Chr5:104963926-104963945 MsG0580030003.01.T01:CDS 55.0%
CAGTGAATGACCCACCAGCT+TGG + Chr5:104963894-104963913 None:intergenic 55.0%
CATCACCACTCTTGGTGGAG+TGG + Chr5:104964749-104964768 None:intergenic 55.0%
CCCTGAGAACCCCATAATGG+AGG - Chr5:104965262-104965281 MsG0580030003.01.T01:intron 55.0%
GCATCAGCTTCCTCCAATGG+TGG + Chr5:104965482-104965501 None:intergenic 55.0%
GGAAGAGGAGGGTAAGGTTG+AGG - Chr5:104964122-104964141 MsG0580030003.01.T01:CDS 55.0%
GGAAGCTGATGCTGATGCAG+AGG - Chr5:104965490-104965509 MsG0580030003.01.T01:intron 55.0%
GTGGGTCATTCACTGTGACC+AGG - Chr5:104963899-104963918 MsG0580030003.01.T01:CDS 55.0%
GTTGGACTGCCAACATGGAG+AGG - Chr5:104965165-104965184 MsG0580030003.01.T01:intron 55.0%
TATGTGTGGGAGTCCCAAGC+TGG - Chr5:104963877-104963896 MsG0580030003.01.T01:CDS 55.0%
TCTTGAGGAACGCCGTCTGA+AGG - Chr5:104963993-104964012 MsG0580030003.01.T01:CDS 55.0%
TGCAGACATGCCACCATTGG+AGG - Chr5:104965469-104965488 MsG0580030003.01.T01:intron 55.0%
TTGAGGGATAGCAGCATGGC+TGG - Chr5:104965206-104965225 MsG0580030003.01.T01:intron 55.0%
TTGTTCCGCCATTGCCGATC+TGG + Chr5:104962516-104962535 None:intergenic 55.0%
! ACCCCATAATGGAGGAGCTG+AGG - Chr5:104965270-104965289 MsG0580030003.01.T01:intron 55.0%
! GCTGAGGAAACGTGCTGATG+CGG - Chr5:104965286-104965305 MsG0580030003.01.T01:intron 55.0%
! GGAGAGGATCATGAAGGCAC+AGG - Chr5:104965181-104965200 MsG0580030003.01.T01:intron 55.0%
! GGTGCTACGAGCAAAGAACG+CGG + Chr5:104965754-104965773 None:intergenic 55.0%
!! CAAGGAGGTGTTGGGTGACA+AGG - Chr5:104965076-104965095 MsG0580030003.01.T01:intron 55.0%
!! GGCTTTGAGGGATAGCAGCA+TGG - Chr5:104965202-104965221 MsG0580030003.01.T01:intron 55.0%
GGAACGCCGTCTGAAGGACT+TGG - Chr5:104963999-104964018 MsG0580030003.01.T01:CDS 60.0%
TGTGGGAGTCCCAAGCTGGT+GGG - Chr5:104963881-104963900 MsG0580030003.01.T01:CDS 60.0%
! GGAAACGTGCTGATGCGGAC+AGG - Chr5:104965291-104965310 MsG0580030003.01.T01:intron 60.0%
GTGTGGGAGTCCCAAGCTGG+TGG - Chr5:104963880-104963899 MsG0580030003.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 104962405 104965799 104962405 ID=MsG0580030003.01;Name=MsG0580030003.01
Chr5 mRNA 104962405 104965799 104962405 ID=MsG0580030003.01.T01;Parent=MsG0580030003.01;Name=MsG0580030003.01.T01;_AED=0.49;_eAED=0.49;_QI=119|1|1|1|1|1|3|261|699
Chr5 exon 104962405 104964500 104962405 ID=MsG0580030003.01.T01:exon:21884;Parent=MsG0580030003.01.T01
Chr5 exon 104964610 104964751 104964610 ID=MsG0580030003.01.T01:exon:21883;Parent=MsG0580030003.01.T01
Chr5 exon 104965558 104965799 104965558 ID=MsG0580030003.01.T01:exon:21882;Parent=MsG0580030003.01.T01
Chr5 five_prime_UTR 104965681 104965799 104965681 ID=MsG0580030003.01.T01:five_prime_utr;Parent=MsG0580030003.01.T01
Chr5 CDS 104965558 104965680 104965558 ID=MsG0580030003.01.T01:cds;Parent=MsG0580030003.01.T01
Chr5 CDS 104964610 104964751 104964610 ID=MsG0580030003.01.T01:cds;Parent=MsG0580030003.01.T01
Chr5 CDS 104962666 104964500 104962666 ID=MsG0580030003.01.T01:cds;Parent=MsG0580030003.01.T01
Chr5 three_prime_UTR 104962405 104962665 104962405 ID=MsG0580030003.01.T01:three_prime_utr;Parent=MsG0580030003.01.T01
Gene Sequence

>MsG0580030003.01.T01

ATGGCGGAACAAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAACTTCTCAGTCTCATCATCAACACCTTTTACAGTAACAAGGAGATTTTTCTTCGTGAACTCATCAGTAACGCTTCCGATGCTTTGGATAAGATCCGTTTTGAGGGCTTGACCGACAAGAGCAAGCTTGATTCTCAGCCAGAGTTGTTCATTCACATTATTCCTGACAAGACCAACAACACCTTGACTATCATTGATAGTGGAATTGGAATGACCAAAGCTGATTTGGTGAACAACCTAGGTACCATTGCTAGGTCTGGTACCAAGGAATTCATGGAAGCCATAGCTGCTGGTGCTGATGTTAGCATGATTGGACAGTTTGGTGTTGGTTTCTACTCTGCTTACCTTGTTGCCGAGAAGGTTATTGTTACCACCAAGCACAATGATGATGAACAGTATGTGTGGGAGTCCCAAGCTGGTGGGTCATTCACTGTGACCAGGGATACAACTGGTGAAGCTCTTGGCAGGGGAACTAAAATAACTCTCATCCTCAAGGAGGATCAACTTGAGTATCTTGAGGAACGCCGTCTGAAGGACTTGGTTAAGAAGCATTCTGAATTTATTAGCTATCCAATTTCTCTTTGGGTTGAGAAGACTATTGAGAAAGAGATTTCTGATGATGAGGACGAGGAAGAGAAGAAGGAAGAGGAGGGTAAGGTTGAGGAAGTAGATGAGGAGAAAGAAAAGGAAGAGAAGAAAAAGAAGAAGATTAAGGAGGTGTCTAATGAATGGTCTTTGGTGAACAAGCAGAAGCCTATTTGGATGAGGAAGCCTGAAGAGATCACAAAGGACGAGTATGCTGCTTTTTACAAGAGTCTCACCAATGATTGGGAAGAGCATTTGGCTGTTAAGCACTTCTCTGTTGAGGGACAGTTGGAGTTTAAGGCTGTTCTCTTTGTACCGAAGAGAGCACCTTTTGATCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGCTGTATGTCCGCCGTGTTTTCATCATGGACAACTGTGAGGAGCTGATGCCCGAGTATCTTAGCTTTGTGAAGGGTATTGTGGACTCTGAGGATCTTCCACTTAACATTTCAAGAGAAATGCTTCAACAGAACAAGATTCTTAAGGTCATCAGGAAGAACTTGGTGAAGAAGTGCCTCGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAAGATTACAACAAGTTCTATGAGGCCTTCTCTAAGAACTTGAAGCTGGGTATCCATGAGGATTCTCAAAACAAGACAAAGCTTGCTGATTTGCTCAGGTACCACTCCACCAAGAGTGGTGATGACATGACCAGCCTCAAGGACTATGTTACCAGGATGAAGGAAGGACAGAATGACATTTACTACATTACTGGTGAAAGCAAGAAAGCTGTTGAGAATTCCCCCTTCCTTGAGAAGCTTAGAAAGAAGGGATATGAAGTGATTTACATGGTTGACGCCATTGATGAATATGCTGTTGGTCAGCTCAAGGAATTTGAGGGTAAGAAGCTAGTGTCTGCAACTAAAGAAGGGTTGAAACTTGACGAGAGTGAGGATGAAAAGAAAAAGATGGAAGAACAGAAGGAGAAGTTCGACAATCTTTGCAAGGTGATCAAGGAGGTGTTGGGTGACAAGGTTGAGAAAGTGGTTGTATCTGACCGTGTTGTCGATTCTCCTTGCTGTTTAGTGACTGGTGAGTATGGTTGGACTGCCAACATGGAGAGGATCATGAAGGCACAGGCTTTGAGGGATAGCAGCATGGCTGGTTACATGTCAAGCAAGAAGACAATGGAAATCAACCCTGAGAACCCCATAATGGAGGAGCTGAGGAAACGTGCTGATGCGGACAGGAATGACAAATCTGTCAAGGACCTTGTTCTCTTGCTGTTTGAGACTGCTCTTCTTACTTCTGGATTCAGCCTTGATGAGCCCAACACTTTTGGCAACAGGATTCACAGGATGCTCAAGCTTGGTCTTAGCATTGATGAGGATGCAGCAGAAGCTGATGCAGACATGCCACCATTGGAGGAAGCTGATGCTGATGCAGAGGGAAGCAAGATGGAAGAGGTCGATTAA

Protein sequence

>MsG0580030003.01.T01

MAEQETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFEGLTDKSKLDSQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDTTGEALGRGTKITLILKEDQLEYLEERRLKDLVKKHSEFISYPISLWVEKTIEKEISDDEDEEEKKEEEGKVEEVDEEKEKEEKKKKKIKEVSNEWSLVNKQKPIWMRKPEEITKDEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEELMPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNKTKLADLLRYHSTKSGDDMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLRKKGYEVIYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKMEEQKEKFDNLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENPIMEELRKRADADRNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDEDAAEADADMPPLEEADADAEGSKMEEVD*