AlfalfaGEDB | MsG0380015426.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015426.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015426.01.T01	XP_003600822.1	69.293	368	67	6	15	347	19	375	2.55E-158	458

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015426.01.T01	G7JAK9	69.293	368	67	6	15	347	19	375	1.22e-158	458

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048383.01	MsG0380015426.01	0.800594	1.339495e-48	6.261665e-46
MsG0180000001.01	MsG0380015426.01	0.808811	2.578093e-50	1.488500e-47
MsG0180000144.01	MsG0380015426.01	0.825064	5.745695e-54	5.181785e-51
MsG0180000364.01	MsG0380015426.01	0.800792	1.220680e-48	5.734787e-46
MsG0180000555.01	MsG0380015426.01	0.813888	2.038091e-51	1.347308e-48
MsG0180000741.01	MsG0380015426.01	0.821779	3.366996e-53	2.765777e-50
MsG0180000836.01	MsG0380015426.01	0.840597	7.901676e-58	1.131024e-54
MsG0180001173.01	MsG0380015426.01	0.834515	2.866831e-56	3.410213e-53
MsG0180001237.01	MsG0380015426.01	0.812415	4.288369e-51	2.725111e-48
MsG0180001566.01	MsG0380015426.01	0.805254	1.458840e-49	7.681252e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015426.01.T01	MTR_3g069790	69.293	368	67	6	15	347	19	375	3.09e-162	458

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015426.01.T01	AT4G15640	45.399	326	133	5	53	343	10	325	5.76e-82	253
MsG0380015426.01.T01	AT4G15640	45.092	326	134	5	53	343	71	386	2.37e-81	253
MsG0380015426.01.T01	AT3G21465	46.061	330	132	6	49	343	66	384	1.92e-80	251
MsG0380015426.01.T01	AT3G21465	45.373	335	132	7	49	343	66	389	6.03e-78	244

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Find 95 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTATATCTGCCGTGCC+TGG	0.513854	3:+70016879	None:intergenic
AAATGGTGTGCAGATGCAAC+TGG	0.441076	3:+70017070	None:intergenic
AAATGTGTGAGCAGGAAAGA+AGG	0.546383	3:-70017126	MsG0380015426.01.T01:intron
AACCCCAAGTGCTAAAGATT+TGG	0.373669	3:-70013056	MsG0380015426.01.T01:three_prime_UTR
AACTTATTCATTGAAGTTGA+AGG	0.478249	3:+70012853	None:intergenic
AAGATTTGGTAGCATATTGG+TGG	0.547949	3:-70013042	MsG0380015426.01.T01:three_prime_UTR
AAGGTTCAGATTTCACTTGC+CGG	0.400102	3:+70017770	None:intergenic
AATAAAGCATACCAAAATCA+AGG	0.473268	3:+70017235	None:intergenic
AATCGGAAACGGCAAGCAGC+AGG	0.469337	3:-70019394	MsG0380015426.01.T01:five_prime_UTR
AATGATTTACCATTGCAACC+AGG	0.653462	3:-70016897	MsG0380015426.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTAGTTCCACAACATGA+TGG	-	Chr3:70018526-70018545	MsG0380015426.01.T01:intron	30.0%
AAGAACAGTTGTGAAAATAG+GGG	-	Chr3:70018467-70018486	MsG0380015426.01.T01:intron	30.0%
AAGATGCAAGTTAGTACATA+AGG	+	Chr3:70016239-70016258	None:intergenic	30.0%
AAGGAAAAAAAAAGGTGAGA+GGG	+	Chr3:70014838-70014857	None:intergenic	30.0%
AATAAGCTGTTTATCCAAAC+AGG	-	Chr3:70014267-70014286	MsG0380015426.01.T01:intron	30.0%
AATAAGCTGTTTATCCAAAC+AGG	+	Chr3:70014286-70014267	None:intergenic	30.0%
ACAAAATGAAGAGGAAAGAA+AGG	-	Chr3:70018795-70018814	MsG0380015426.01.T01:intron	30.0%
ACTTGAGGCAAATATAAGTT+TGG	-	Chr3:70018974-70018993	MsG0380015426.01.T01:intron	30.0%
AGATAGTAAGTCGAAATTGA+TGG	-	Chr3:70013524-70013543	MsG0380015426.01.T01:intron	30.0%
AGTTGCCTTCATAAAACAAA+AGG	+	Chr3:70015603-70015622	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	70012843	70019430	70012843	ID=MsG0380015426.01;Name=MsG0380015426.01
Chr3	mRNA	70012843	70019430	70012843	ID=MsG0380015426.01.T01;Parent=MsG0380015426.01;Name=MsG0380015426.01.T01;_AED=0.35;_eAED=0.35;_QI=183\|0.5\|0.72\|0.90\|0.8\|0.63\|11\|364\|347
Chr3	exon	70012843	70012952	70012843	ID=MsG0380015426.01.T01:exon:352;Parent=MsG0380015426.01.T01
Chr3	exon	70012988	70013361	70012988	ID=MsG0380015426.01.T01:exon:351;Parent=MsG0380015426.01.T01
Chr3	exon	70013968	70014027	70013968	ID=MsG0380015426.01.T01:exon:350;Parent=MsG0380015426.01.T01
Chr3	exon	70014666	70014757	70014666	ID=MsG0380015426.01.T01:exon:349;Parent=MsG0380015426.01.T01
Chr3	exon	70016213	70016334	70016213	ID=MsG0380015426.01.T01:exon:348;Parent=MsG0380015426.01.T01
Chr3	exon	70016876	70016982	70016876	ID=MsG0380015426.01.T01:exon:347;Parent=MsG0380015426.01.T01
Chr3	exon	70017066	70017134	70017066	ID=MsG0380015426.01.T01:exon:346;Parent=MsG0380015426.01.T01
Chr3	exon	70017230	70017411	70017230	ID=MsG0380015426.01.T01:exon:345;Parent=MsG0380015426.01.T01
Chr3	exon	70017517	70017612	70017517	ID=MsG0380015426.01.T01:exon:344;Parent=MsG0380015426.01.T01
Chr3	exon	70017704	70017984	70017704	ID=MsG0380015426.01.T01:exon:343;Parent=MsG0380015426.01.T01
Chr3	exon	70019333	70019430	70019333	ID=MsG0380015426.01.T01:exon:342;Parent=MsG0380015426.01.T01
Chr3	five_prime_UTR	70019333	70019430	70019333	ID=MsG0380015426.01.T01:five_prime_utr;Parent=MsG0380015426.01.T01
Chr3	five_prime_UTR	70017900	70017984	70017900	ID=MsG0380015426.01.T01:five_prime_utr;Parent=MsG0380015426.01.T01
Chr3	CDS	70017704	70017899	70017704	ID=MsG0380015426.01.T01:cds;Parent=MsG0380015426.01.T01
Chr3	CDS	70017517	70017612	70017517	ID=MsG0380015426.01.T01:cds;Parent=MsG0380015426.01.T01
Chr3	CDS	70017230	70017411	70017230	ID=MsG0380015426.01.T01:cds;Parent=MsG0380015426.01.T01
Chr3	CDS	70017066	70017134	70017066	ID=MsG0380015426.01.T01:cds;Parent=MsG0380015426.01.T01
Chr3	CDS	70016876	70016982	70016876	ID=MsG0380015426.01.T01:cds;Parent=MsG0380015426.01.T01
Chr3	CDS	70016213	70016334	70016213	ID=MsG0380015426.01.T01:cds;Parent=MsG0380015426.01.T01
Chr3	CDS	70014666	70014757	70014666	ID=MsG0380015426.01.T01:cds;Parent=MsG0380015426.01.T01
Chr3	CDS	70013968	70014027	70013968	ID=MsG0380015426.01.T01:cds;Parent=MsG0380015426.01.T01
Chr3	CDS	70013242	70013361	70013242	ID=MsG0380015426.01.T01:cds;Parent=MsG0380015426.01.T01
Chr3	three_prime_UTR	70012988	70013241	70012988	ID=MsG0380015426.01.T01:three_prime_utr;Parent=MsG0380015426.01.T01
Chr3	three_prime_UTR	70012843	70012952	70012843	ID=MsG0380015426.01.T01:three_prime_utr;Parent=MsG0380015426.01.T01

Gene Sequence

>MsG0380015426.01.T01

ATGCTCGCCGAGTCTCTCGGCTCTTGCAATCTCCGACTTTCCTTTCCTTTCACTCATCTTCGAAGCACTGAAGAACCGATTCTCTCGGGGCTCGCACAACATTATTACCGGCAAGTGAAATCTGAACCTTCAATTTTCTTCCGCGTCGAAGCTTTTTACAGTTCTGGAGTTGATAATGTTGAAGGGACTCCAACAGATGCTGTGAAGAATCTTTATGATAAGATGCTTGAGTCTGTAAATGTTAAACGATCCATGCCTCCAAATGCTTGGTTGTGGTCAATGATCGCTAATTTTATCATTATTTTTTTTATATTGATTCACTCTCTTTGCTATGATGTTGAATTTAATCTATTTGATGAGCAGAGGTTGTCAAATCTTCGCATACATGACAATTTTAACTGCCACCTCTGTCGTGAAGTTACTAAGGCATGTGTTCATGCGGGAGCCCTTGATTTTGGTATGCTTTATTTGCGTGAAAGAAGGCTTTGTGGAAGCATAATGTCTATGGATTGGCACCCAGTTGCATCTGCACACCATTTACTGCTTTTTGCTAAGAACAACAATGATACTAAACTATTGGTGGAGGTAATGAAACTTTTGAAGAAGAATGATTTACCATTGCAACCAGGCACGGCAGATATAGTTTTCAGCATTTGTTACAATACAGATGAATGGGAGTTGATTAATAAGTATGCAATAAGGTTTGTCAAGGCTGGTGTAAAACTACGTGAAACCTCATTTGACACATGGATGAAATTTGCTGCTAAAAGAGGAGTAAGATACGTAACAGTGAAGGGTGTTTTCGTACCGTATCGCGATTTGTATCGTATGTATTATAGGATACAAGGTGTTCTGGGATATAGAGGTCTTCTGTTGGAAGGTAAGCCTAGTGACGCTGTTGCCATCATTCAAGATCTAAATCAGGCATTAGCAGTCTCTTTGAAATCTGATATTCTTGCAATGGTTAATGATTTACTGGACATGGGACTTGAGGCAAATATAAGTTTGGAAGACCTAAACAGAAGAGAAGAAGTTCCACAATAG

Protein sequence

>MsG0380015426.01.T01

MLAESLGSCNLRLSFPFTHLRSTEEPILSGLAQHYYRQVKSEPSIFFRVEAFYSSGVDNVEGTPTDAVKNLYDKMLESVNVKRSMPPNAWLWSMIANFIIIFFILIHSLCYDVEFNLFDEQRLSNLRIHDNFNCHLCREVTKACVHAGALDFGMLYLRERRLCGSIMSMDWHPVASAHHLLLFAKNNNDTKLLVEVMKLLKKNDLPLQPGTADIVFSICYNTDEWELINKYAIRFVKAGVKLRETSFDTWMKFAAKRGVRYVTVKGVFVPYRDLYRMYYRIQGVLGYRGLLLEGKPSDAVAIIQDLNQALAVSLKSDILAMVNDLLDMGLEANISLEDLNRREEVPQ*