Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006913.01.T01 | XP_013462590.1 | 62.544 | 283 | 18 | 3 | 1 | 195 | 1 | 283 | 1.42E-106 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006913.01.T01 | A0A072VEM0 | 62.544 | 283 | 18 | 3 | 1 | 195 | 1 | 283 | 6.81e-107 | 317 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049078.01 | MsG0280006913.01 | 0.817692 | 2.890336e-52 | 2.119593e-49 |
| MsG0080049079.01 | MsG0280006913.01 | 0.810862 | 9.335407e-51 | 5.691495e-48 |
| MsG0180000159.01 | MsG0280006913.01 | 0.805579 | 1.247232e-49 | 6.622347e-47 |
| MsG0180000677.01 | MsG0280006913.01 | 0.810223 | 1.282406e-50 | 7.686132e-48 |
| MsG0180001105.01 | MsG0280006913.01 | 0.826337 | 2.866887e-54 | 2.680983e-51 |
| MsG0180001270.01 | MsG0280006913.01 | 0.802212 | 6.245357e-49 | 3.041640e-46 |
| MsG0180004188.01 | MsG0280006913.01 | 0.841309 | 5.139128e-58 | 7.520196e-55 |
| MsG0180004302.01 | MsG0280006913.01 | 0.807538 | 4.814055e-50 | 2.688290e-47 |
| MsG0180004542.01 | MsG0280006913.01 | 0.814451 | 1.530840e-51 | 1.027529e-48 |
| MsG0180004733.01 | MsG0280006913.01 | 0.800262 | 1.565091e-48 | 7.255084e-46 |
| MsG0180004937.01 | MsG0280006913.01 | 0.813699 | 2.243046e-51 | 1.475213e-48 |
| MsG0180005568.01 | MsG0280006913.01 | 0.858655 | 7.095632e-63 | 1.824207e-59 |
| MsG0180006104.01 | MsG0280006913.01 | 0.803421 | 3.513634e-49 | 1.764943e-46 |
| MsG0280006896.01 | MsG0280006913.01 | 0.804225 | 2.392525e-49 | 1.226811e-46 |
| MsG0280006913.01 | MsG0280010198.01 | 0.827813 | 1.271263e-54 | 1.240663e-51 |
| MsG0280006913.01 | MsG0280010926.01 | 0.812449 | 4.216727e-51 | 2.682007e-48 |
| MsG0280006913.01 | MsG0280010975.01 | 0.820245 | 7.593724e-53 | 5.976464e-50 |
| MsG0280006913.01 | MsG0380013927.01 | 0.820740 | 5.847248e-53 | 4.665328e-50 |
| MsG0280006913.01 | MsG0380013955.01 | 0.819639 | 1.044743e-52 | 8.084823e-50 |
| MsG0280006913.01 | MsG0380013970.01 | 0.829373 | 5.338519e-55 | 5.454083e-52 |
| MsG0280006913.01 | MsG0380013996.01 | 0.814771 | 1.299973e-51 | 8.800948e-49 |
| MsG0280006913.01 | MsG0380014007.01 | 0.826903 | 2.101508e-54 | 1.997424e-51 |
| MsG0280006913.01 | MsG0380014012.01 | 0.808516 | 2.980413e-50 | 1.707629e-47 |
| MsG0280006913.01 | MsG0380014022.01 | 0.800399 | 1.468053e-48 | 6.828834e-46 |
| MsG0280006913.01 | MsG0380014037.01 | 0.827201 | 1.782893e-54 | 1.709455e-51 |
| MsG0280006913.01 | MsG0380014053.01 | 0.832897 | 7.271039e-56 | 8.238984e-53 |
| MsG0280006913.01 | MsG0380015603.01 | 0.821072 | 4.904329e-53 | 3.949889e-50 |
| MsG0280006913.01 | MsG0380015896.01 | 0.802447 | 5.585738e-49 | 2.736826e-46 |
| MsG0280006913.01 | MsG0380016137.01 | 0.815840 | 7.523397e-52 | 5.244154e-49 |
| MsG0280006913.01 | MsG0380016194.01 | 0.808953 | 2.404299e-50 | 1.393379e-47 |
| MsG0280006913.01 | MsG0380016762.01 | 0.821347 | 4.236944e-53 | 3.438316e-50 |
| MsG0280006913.01 | MsG0380017661.01 | 0.855452 | 6.249187e-62 | 1.443476e-58 |
| MsG0280006913.01 | MsG0380017728.01 | 0.842395 | 2.654066e-58 | 4.019164e-55 |
| MsG0280006913.01 | MsG0480018089.01 | 0.823868 | 1.098333e-53 | 9.573184e-51 |
| MsG0280006913.01 | MsG0480018585.01 | -0.814367 | 1.597013e-51 | 1.069535e-48 |
| MsG0280006913.01 | MsG0480019582.01 | 0.801583 | 8.409861e-49 | 4.030789e-46 |
| MsG0280006913.01 | MsG0480019592.01 | 0.823625 | 1.252346e-53 | 1.084079e-50 |
| MsG0280006913.01 | MsG0480020049.01 | 0.807315 | 5.368542e-50 | 2.980729e-47 |
| MsG0280006913.01 | MsG0480020350.01 | 0.825611 | 4.264333e-54 | 3.906122e-51 |
| MsG0280006913.01 | MsG0480020690.01 | 0.803689 | 3.091822e-49 | 1.563774e-46 |
| MsG0280006913.01 | MsG0480021294.01 | 0.839203 | 1.823382e-57 | 2.499960e-54 |
| MsG0280006913.01 | MsG0480021303.01 | 0.850436 | 1.700770e-60 | 3.331509e-57 |
| MsG0280006913.01 | MsG0480021737.01 | 0.801962 | 7.029315e-49 | 3.401675e-46 |
| MsG0280006913.01 | MsG0480022294.01 | 0.809263 | 2.063200e-50 | 1.205738e-47 |
| MsG0280006913.01 | MsG0480022401.01 | 0.820075 | 8.306088e-53 | 6.507065e-50 |
| MsG0280006913.01 | MsG0480023381.01 | 0.800833 | 1.197276e-48 | 5.630986e-46 |
| MsG0280006913.01 | MsG0480023422.01 | 0.806678 | 7.318942e-50 | 3.996834e-47 |
| MsG0280006913.01 | MsG0580024873.01 | 0.813615 | 2.340253e-51 | 1.535669e-48 |
| MsG0280006913.01 | MsG0580024982.01 | 0.816806 | 4.574326e-52 | 3.273992e-49 |
| MsG0280006913.01 | MsG0580026430.01 | 0.801982 | 6.962213e-49 | 3.370922e-46 |
| MsG0280006913.01 | MsG0580028024.01 | 0.847382 | 1.198435e-59 | 2.126280e-56 |
| MsG0280006913.01 | MsG0580028335.01 | 0.803362 | 3.615504e-49 | 1.813203e-46 |
| MsG0280006913.01 | MsG0580028925.01 | 0.805477 | 1.310060e-49 | 6.937753e-47 |
| MsG0280006913.01 | MsG0580029414.01 | 0.838694 | 2.470411e-57 | 3.334777e-54 |
| MsG0280006913.01 | MsG0580030006.01 | 0.813588 | 2.372631e-51 | 1.555745e-48 |
| MsG0280006913.01 | MsG0680031689.01 | 0.801453 | 8.940840e-49 | 4.271419e-46 |
| MsG0280006913.01 | MsG0680032057.01 | 0.814999 | 1.157534e-51 | 7.885462e-49 |
| MsG0280006913.01 | MsG0680034064.01 | 0.823952 | 1.049628e-53 | 9.170351e-51 |
| MsG0280006913.01 | MsG0680035731.01 | 0.819211 | 1.308112e-52 | 1.000297e-49 |
| MsG0280006913.01 | MsG0780036567.01 | 0.800823 | 1.203099e-48 | 5.656757e-46 |
| MsG0280006913.01 | MsG0780038571.01 | 0.814863 | 1.240534e-51 | 8.419459e-49 |
| MsG0280006913.01 | MsG0780039707.01 | 0.822463 | 2.337118e-53 | 1.957583e-50 |
| MsG0280006913.01 | MsG0780039975.01 | 0.836333 | 9.949016e-57 | 1.249993e-53 |
| MsG0280006913.01 | MsG0780040284.01 | 0.817186 | 3.757478e-52 | 2.717481e-49 |
| MsG0280006913.01 | MsG0780040314.01 | 0.804976 | 1.668143e-49 | 8.721445e-47 |
| MsG0280006913.01 | MsG0780041289.01 | 0.802575 | 5.256685e-49 | 2.583931e-46 |
| MsG0280006913.01 | MsG0880042290.01 | 0.813359 | 2.664560e-51 | 1.736366e-48 |
| MsG0280006913.01 | MsG0880042931.01 | 0.813191 | 2.900073e-51 | 1.881066e-48 |
| MsG0280006913.01 | MsG0880044314.01 | 0.807997 | 3.844655e-50 | 2.172928e-47 |
| MsG0280006913.01 | MsG0880045412.01 | 0.815715 | 8.022486e-52 | 5.573429e-49 |
| MsG0280006913.01 | MsG0880046723.01 | 0.813824 | 2.104663e-51 | 1.388890e-48 |
| MsG0280006913.01 | MsG0880046736.01 | 0.816135 | 6.463763e-52 | 4.542394e-49 |
| MsG0280006913.01 | MsG0880046791.01 | 0.818448 | 1.949887e-52 | 1.460143e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006913.01.T01 | MTR_2g016520 | 62.544 | 283 | 18 | 3 | 1 | 195 | 1 | 283 | 1.73e-110 | 317 |
| MsG0280006913.01.T01 | MTR_4g086500 | 60.428 | 187 | 41 | 2 | 42 | 195 | 124 | 310 | 2.05e-72 | 221 |
| MsG0280006913.01.T01 | MTR_8g086550 | 59.358 | 187 | 43 | 2 | 42 | 195 | 124 | 310 | 1.03e-70 | 217 |
| MsG0280006913.01.T01 | MTR_5g081560 | 42.342 | 111 | 54 | 2 | 91 | 194 | 102 | 209 | 6.91e-26 | 99.4 |
| MsG0280006913.01.T01 | MTR_3g069730 | 44.037 | 109 | 45 | 2 | 91 | 190 | 110 | 211 | 9.19e-26 | 99.4 |
| MsG0280006913.01.T01 | MTR_7g065920 | 37.671 | 146 | 67 | 5 | 64 | 194 | 96 | 232 | 1.32e-24 | 96.7 |
| MsG0280006913.01.T01 | MTR_3g069760 | 50.909 | 55 | 27 | 0 | 95 | 149 | 95 | 149 | 1.59e-14 | 68.9 |
| MsG0280006913.01.T01 | MTR_8g086580 | 65.306 | 49 | 14 | 2 | 78 | 123 | 99 | 147 | 1.57e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006913.01.T01 | AT5G05830 | 36.686 | 169 | 91 | 5 | 37 | 194 | 38 | 201 | 1.17e-27 | 103 |
| MsG0280006913.01.T01 | AT5G59000 | 43.269 | 104 | 59 | 0 | 92 | 195 | 127 | 230 | 2.37e-25 | 98.6 |
| MsG0280006913.01.T01 | AT5G01070 | 38.636 | 132 | 67 | 4 | 73 | 194 | 75 | 202 | 4.88e-23 | 92.0 |
| MsG0280006913.01.T01 | AT2G37950 | 37.615 | 109 | 61 | 2 | 89 | 191 | 93 | 200 | 2.71e-22 | 90.1 |
| MsG0280006913.01.T01 | AT2G34200 | 48.039 | 102 | 43 | 3 | 89 | 190 | 121 | 212 | 1.35e-21 | 88.6 |
| MsG0280006913.01.T01 | AT2G34200 | 48.039 | 102 | 43 | 3 | 89 | 190 | 121 | 212 | 1.35e-21 | 88.6 |
Find 55 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTATTTCTTTCCATTATT+TGG | 0.053941 | 2:+7891467 | MsG0280006913.01.T01:three_prime_UTR |
| AATAATGGAAAGAAATAATT+TGG | 0.250141 | 2:-7891464 | None:intergenic |
| TGTTGCTAGTAATGGATTTA+TGG | 0.261113 | 2:+7891111 | MsG0280006913.01.T01:CDS |
| TTGATGAGAATTTGAGTATT+TGG | 0.301267 | 2:+7889398 | MsG0280006913.01.T01:CDS |
| TGAAGTTAGAGTTGAAGTTT+TGG | 0.306233 | 2:+7889357 | MsG0280006913.01.T01:CDS |
| TTCTTTCTTATGTAGTCATT+TGG | 0.314945 | 2:+7891661 | MsG0280006913.01.T01:three_prime_UTR |
| GTTCAGAGTGAGGGTGTTAA+TGG | 0.329712 | 2:+7889614 | MsG0280006913.01.T01:intron |
| GAAGCAAAAGCTGATGAATC+AGG | 0.330581 | 2:+7889653 | MsG0280006913.01.T01:CDS |
| GTTGAAGGGGTTTGAGAAGT+TGG | 0.338483 | 2:+7889420 | MsG0280006913.01.T01:CDS |
| TATACATATACTCCAAATAA+TGG | 0.342317 | 2:-7891479 | None:intergenic |
| GCCATTAAGAAATTACAAAA+TGG | 0.360240 | 2:-7891211 | None:intergenic |
| TGAGGTGTGGTTCAAGCTTA+AGG | 0.381572 | 2:+7889936 | MsG0280006913.01.T01:CDS |
| GGAGTATATGTATACGTTGA+TGG | 0.384465 | 2:+7891488 | MsG0280006913.01.T01:three_prime_UTR |
| GTGGAATGATAGAAGATTCA+TGG | 0.388144 | 2:+7891138 | MsG0280006913.01.T01:CDS |
| TGATGAATCAGGGCTTAGTT+TGG | 0.391331 | 2:+7889664 | MsG0280006913.01.T01:CDS |
| CATGTAGATATGTTCTAGCT+TGG | 0.407674 | 2:+7891271 | MsG0280006913.01.T01:exon |
| CAGCGAATTTCAAATCTTCT+CGG | 0.412745 | 2:-7891402 | None:intergenic |
| CCCGCAGGTTTGGTGGATGC+TGG | 0.418856 | 2:+7891179 | MsG0280006913.01.T01:CDS |
| ATGTAGATATGTTCTAGCTT+GGG | 0.420562 | 2:+7891272 | MsG0280006913.01.T01:exon |
| TCATTCACTCTTATATTAGT+AGG | 0.428728 | 2:-7891339 | None:intergenic |
| GTTTCGGGTGTTGCTAGTAA+TGG | 0.430988 | 2:+7891103 | MsG0280006913.01.T01:CDS |
| GATAACTCATCCCGCAGGTT+TGG | 0.431319 | 2:+7891169 | MsG0280006913.01.T01:CDS |
| GTAGGTATGAAGAATTGAAA+AGG | 0.442274 | 2:-7891321 | None:intergenic |
| GGTTCAAGCTTAAGGGAAAC+AGG | 0.442409 | 2:+7889944 | MsG0280006913.01.T01:CDS |
| TAGGTATGAAGAATTGAAAA+GGG | 0.444173 | 2:-7891320 | None:intergenic |
| TAATTTCTTAATGGCGTGCC+TGG | 0.448382 | 2:+7891219 | MsG0280006913.01.T01:CDS |
| GAGGTGTGGTTCAAGCTTAA+GGG | 0.458334 | 2:+7889937 | MsG0280006913.01.T01:CDS |
| TCAGTTTCAGACACCCCTTT+CGG | 0.465299 | 2:-7889701 | None:intergenic |
| GAATTTGAGTATTTGGTTGA+AGG | 0.470712 | 2:+7889405 | MsG0280006913.01.T01:CDS |
| AACTCATCCCGCAGGTTTGG+TGG | 0.479462 | 2:+7891172 | MsG0280006913.01.T01:CDS |
| AATTTGAGTATTTGGTTGAA+GGG | 0.491432 | 2:+7889406 | MsG0280006913.01.T01:CDS |
| TTTCGATGAAAGTGCCGAAA+GGG | 0.498203 | 2:+7889687 | MsG0280006913.01.T01:CDS |
| CCAGCATCCACCAAACCTGC+GGG | 0.514150 | 2:-7891179 | None:intergenic |
| GAAGTTACGAGCTTGATAAG+TGG | 0.517301 | 2:+7891437 | MsG0280006913.01.T01:three_prime_UTR |
| TAATAGCGTTCATTCTGCCA+TGG | 0.558083 | 2:+7891242 | MsG0280006913.01.T01:CDS |
| AGGTTTGGTGGATGCTGGCG+AGG | 0.561458 | 2:+7891184 | MsG0280006913.01.T01:CDS |
| GTAATGGATTTATGGAAGAG+TGG | 0.563387 | 2:+7891119 | MsG0280006913.01.T01:CDS |
| AAATGACTACATAAGAAAGA+AGG | 0.564888 | 2:-7891659 | None:intergenic |
| GCAGAATGAACGCTATTACC+AGG | 0.567759 | 2:-7891237 | None:intergenic |
| GCCAGCATCCACCAAACCTG+CGG | 0.569525 | 2:-7891180 | None:intergenic |
| ATTTGAGTATTTGGTTGAAG+GGG | 0.575705 | 2:+7889407 | MsG0280006913.01.T01:CDS |
| ATGTTCACTGTGCTGAGGTG+TGG | 0.588500 | 2:+7889923 | MsG0280006913.01.T01:CDS |
| AAGCAAAAGCTGATGAATCA+GGG | 0.591275 | 2:+7889654 | MsG0280006913.01.T01:CDS |
| CTAATATAAGAGTGAATGAG+TGG | 0.599350 | 2:+7891343 | MsG0280006913.01.T01:three_prime_UTR |
| GTTTCGATGAAAGTGCCGAA+AGG | 0.607405 | 2:+7889686 | MsG0280006913.01.T01:CDS |
| AGAAGTTGGAACTTCAAGAG+AGG | 0.625626 | 2:+7889434 | MsG0280006913.01.T01:CDS |
| TGTGCGTGTAAAGACGAGCT+TGG | 0.628343 | 2:+7889892 | MsG0280006913.01.T01:CDS |
| TTCGATGAAAGTGCCGAAAG+GGG | 0.628627 | 2:+7889688 | MsG0280006913.01.T01:CDS |
| TGCACATGTTCACTGTGCTG+AGG | 0.630611 | 2:+7889918 | MsG0280006913.01.T01:CDS |
| GAGTGAGGGTGTTAATGGAG+AGG | 0.641731 | 2:+7889619 | MsG0280006913.01.T01:intron |
| AGTGGAGATCTAATTCAGCT+CGG | 0.661685 | 2:+7889868 | MsG0280006913.01.T01:CDS |
| GAAAATGCTAGTGCTGCAAG+TGG | 0.663201 | 2:+7889850 | MsG0280006913.01.T01:CDS |
| ACGACGATAACTCATCCCGC+AGG | 0.676581 | 2:+7891164 | MsG0280006913.01.T01:CDS |
| AACAGGTTATGTGAAATATG+CGG | 0.695240 | 2:+7891064 | MsG0280006913.01.T01:intron |
| AGGGTGTTAATGGAGAGGCG+AGG | 0.702113 | 2:+7889624 | MsG0280006913.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTTAAAAAAAAAGTT+GGG | + | Chr2:7890698-7890717 | MsG0280006913.01.T01:intron | 10.0% |
| !!! | TCTTTTTTTAAAAAAAAAGT+TGG | + | Chr2:7890697-7890716 | MsG0280006913.01.T01:intron | 10.0% |
| !!! | TTTTTTTAAAAAAAAAGTTG+GGG | + | Chr2:7890699-7890718 | MsG0280006913.01.T01:intron | 10.0% |
| !! | ATAAAGATATAATAGACAAA+TGG | - | Chr2:7890181-7890200 | None:intergenic | 15.0% |
| !! | TCTAATAACATTTAGTATTA+AGG | - | Chr2:7890271-7890290 | None:intergenic | 15.0% |
| !!! | AATAATGGAAAGAAATAATT+TGG | - | Chr2:7891467-7891486 | None:intergenic | 15.0% |
| !!! | AATGATCTTATTTGATAATA+TGG | - | Chr2:7891023-7891042 | None:intergenic | 15.0% |
| !!! | AATTATTTCTTTCCATTATT+TGG | + | Chr2:7891467-7891486 | MsG0280006913.01.T01:three_prime_UTR | 15.0% |
| !! | TATACATATACTCCAAATAA+TGG | - | Chr2:7891482-7891501 | None:intergenic | 20.0% |
| !!! | CATTTTCTAATAATGTTGTT+GGG | - | Chr2:7890830-7890849 | None:intergenic | 20.0% |
| ! | AAATGACTACATAAGAAAGA+AGG | - | Chr2:7891662-7891681 | None:intergenic | 25.0% |
| ! | AATCCTACAACCATAAAAAA+GGG | - | Chr2:7890665-7890684 | None:intergenic | 25.0% |
| ! | AATTTGAGTATTTGGTTGAA+GGG | + | Chr2:7889406-7889425 | MsG0280006913.01.T01:CDS | 25.0% |
| ! | ACCAATTTCATTAGTGATAA+TGG | - | Chr2:7890455-7890474 | None:intergenic | 25.0% |
| ! | ACCATTATCACTAATGAAAT+TGG | + | Chr2:7890451-7890470 | MsG0280006913.01.T01:intron | 25.0% |
| ! | ATATCTACATGAAAAAACCA+TGG | - | Chr2:7891262-7891281 | None:intergenic | 25.0% |
| ! | CCAACAACATTATTAGAAAA+TGG | + | Chr2:7890828-7890847 | MsG0280006913.01.T01:intron | 25.0% |
| ! | GAGAATGTTTGCAAATAATA+TGG | - | Chr2:7890957-7890976 | None:intergenic | 25.0% |
| ! | GCCATTAAGAAATTACAAAA+TGG | - | Chr2:7891214-7891233 | None:intergenic | 25.0% |
| ! | GCTTGAATTTATCCTTAATT+TGG | + | Chr2:7890401-7890420 | MsG0280006913.01.T01:intron | 25.0% |
| ! | TAAAAAAAAAGTTGGGGATT+GGG | + | Chr2:7890705-7890724 | MsG0280006913.01.T01:intron | 25.0% |
| ! | TAATCCTACAACCATAAAAA+AGG | - | Chr2:7890666-7890685 | None:intergenic | 25.0% |
| ! | TAGGTATGAAGAATTGAAAA+GGG | - | Chr2:7891323-7891342 | None:intergenic | 25.0% |
| ! | TCACAACTTCAACAATAATA+TGG | + | Chr2:7890228-7890247 | MsG0280006913.01.T01:intron | 25.0% |
| ! | TCATTCACTCTTATATTAGT+AGG | - | Chr2:7891342-7891361 | None:intergenic | 25.0% |
| ! | TTAAAAAAAAAGTTGGGGAT+TGG | + | Chr2:7890704-7890723 | MsG0280006913.01.T01:intron | 25.0% |
| ! | TTAGCACTTCAAAAATAAGT+TGG | - | Chr2:7890084-7890103 | None:intergenic | 25.0% |
| ! | TTCTTTCTTATGTAGTCATT+TGG | + | Chr2:7891661-7891680 | MsG0280006913.01.T01:three_prime_UTR | 25.0% |
| ! | TTGATGAGAATTTGAGTATT+TGG | + | Chr2:7889398-7889417 | MsG0280006913.01.T01:CDS | 25.0% |
| !! | AAAAGTGTGATGAATTGTTA+TGG | + | Chr2:7889509-7889528 | MsG0280006913.01.T01:intron | 25.0% |
| !! | CCATTTTCTAATAATGTTGT+TGG | - | Chr2:7890831-7890850 | None:intergenic | 25.0% |
| !! | TGTTTGTTACCTTGATAATT+TGG | + | Chr2:7890200-7890219 | MsG0280006913.01.T01:intron | 25.0% |
| !! | TTTTATGGTTGTAGGATTAA+TGG | + | Chr2:7890667-7890686 | MsG0280006913.01.T01:intron | 25.0% |
| !!! | AGCTATCATTTTTTAACAAC+AGG | + | Chr2:7891047-7891066 | MsG0280006913.01.T01:intron | 25.0% |
| !!! | GCCATTTTGTAATTTCTTAA+TGG | + | Chr2:7891210-7891229 | MsG0280006913.01.T01:CDS | 25.0% |
| AAAAAAAAAGTTGGGGATTG+GGG | + | Chr2:7890706-7890725 | MsG0280006913.01.T01:intron | 30.0% | |
| AAAATTGCTAGATGTCAAAC+TGG | - | Chr2:7890906-7890925 | None:intergenic | 30.0% | |
| AACAGGTTATGTGAAATATG+CGG | + | Chr2:7891064-7891083 | MsG0280006913.01.T01:intron | 30.0% | |
| ATGCTTTCTAGATTCATTGT+TGG | + | Chr2:7890372-7890391 | MsG0280006913.01.T01:intron | 30.0% | |
| ATTGTAAGTTTGTAACCTTG+AGG | - | Chr2:7890779-7890798 | None:intergenic | 30.0% | |
| ATTTGAGTATTTGGTTGAAG+GGG | + | Chr2:7889407-7889426 | MsG0280006913.01.T01:CDS | 30.0% | |
| CATTATTAGAAAATGGCTTC+TGG | + | Chr2:7890835-7890854 | MsG0280006913.01.T01:intron | 30.0% | |
| CTAATATAAGAGTGAATGAG+TGG | + | Chr2:7891343-7891362 | MsG0280006913.01.T01:three_prime_UTR | 30.0% | |
| CTAGTTGTAATTCAAGCATT+TGG | + | Chr2:7889544-7889563 | MsG0280006913.01.T01:intron | 30.0% | |
| GAATTTGAGTATTTGGTTGA+AGG | + | Chr2:7889405-7889424 | MsG0280006913.01.T01:CDS | 30.0% | |
| GTAGGTATGAAGAATTGAAA+AGG | - | Chr2:7891324-7891343 | None:intergenic | 30.0% | |
| GTGAATGTTCCAAATTATCA+AGG | - | Chr2:7890212-7890231 | None:intergenic | 30.0% | |
| TAGAACAAGAGTTAAGAAGT+AGG | + | Chr2:7890292-7890311 | MsG0280006913.01.T01:intron | 30.0% | |
| TATAATAGACAAATGGCAAG+AGG | - | Chr2:7890174-7890193 | None:intergenic | 30.0% | |
| TATTTGCAAACATTCTCTTG+TGG | + | Chr2:7890960-7890979 | MsG0280006913.01.T01:intron | 30.0% | |
| TGAATTGTTATGGTTGATCA+AGG | + | Chr2:7889519-7889538 | MsG0280006913.01.T01:intron | 30.0% | |
| TGAGACTGCAAAAAATGTTT+CGG | + | Chr2:7891087-7891106 | MsG0280006913.01.T01:CDS | 30.0% | |
| TGCTTTCTAGATTCATTGTT+GGG | + | Chr2:7890373-7890392 | MsG0280006913.01.T01:intron | 30.0% | |
| ! | ATAATGTTCTGGATCCAATA+AGG | + | Chr2:7889460-7889479 | MsG0280006913.01.T01:intron | 30.0% |
| ! | ATGTCAAACTGGAATTTTCA+TGG | - | Chr2:7890895-7890914 | None:intergenic | 30.0% |
| ! | GAAGATTCTTTTGGATTATG+TGG | + | Chr2:7890993-7891012 | MsG0280006913.01.T01:intron | 30.0% |
| ! | TGAAGTTAGAGTTGAAGTTT+TGG | + | Chr2:7889357-7889376 | MsG0280006913.01.T01:CDS | 30.0% |
| ! | TTTGAAGTGCTAATGTTGTT+GGG | + | Chr2:7890091-7890110 | MsG0280006913.01.T01:intron | 30.0% |
| !! | ATGTAGATATGTTCTAGCTT+GGG | + | Chr2:7891272-7891291 | MsG0280006913.01.T01:exon | 30.0% |
| !! | GTTGTAGGATTAATGGATTA+TGG | + | Chr2:7890674-7890693 | MsG0280006913.01.T01:intron | 30.0% |
| !! | TGAATCTAGAAAGCATTTGA+AGG | - | Chr2:7890368-7890387 | None:intergenic | 30.0% |
| !! | TGTTGCTAGTAATGGATTTA+TGG | + | Chr2:7891111-7891130 | MsG0280006913.01.T01:CDS | 30.0% |
| !!! | TAGAGTTGAAGTTTTGGATT+CGG | + | Chr2:7889363-7889382 | MsG0280006913.01.T01:CDS | 30.0% |
| !!! | TAGTGAATGTAGTTTTATGC+AGG | + | Chr2:7890604-7890623 | MsG0280006913.01.T01:intron | 30.0% |
| !!! | TAGTTTTATGCAGGAATAGT+CGG | + | Chr2:7890613-7890632 | MsG0280006913.01.T01:intron | 30.0% |
| !!! | TGAGATTGACATGTTTTTTG+AGG | + | Chr2:7890015-7890034 | MsG0280006913.01.T01:intron | 30.0% |
| !!! | TTTTGAAGTGCTAATGTTGT+TGG | + | Chr2:7890090-7890109 | MsG0280006913.01.T01:intron | 30.0% |
| !!! | TTTTTGAGGTTTTGCATTGA+CGG | + | Chr2:7890029-7890048 | MsG0280006913.01.T01:intron | 30.0% |
| AAAAAAAAGTTGGGGATTGG+GGG | + | Chr2:7890707-7890726 | MsG0280006913.01.T01:intron | 35.0% | |
| AAGCAAAAGCTGATGAATCA+GGG | + | Chr2:7889654-7889673 | MsG0280006913.01.T01:CDS | 35.0% | |
| AATCCAAAAGAATCTTCCTC+AGG | - | Chr2:7890990-7891009 | None:intergenic | 35.0% | |
| ACCATAAAAAAGGGCCATAT+TGG | - | Chr2:7890656-7890675 | None:intergenic | 35.0% | |
| AGAAGCTGAACTCCAAATTA+AGG | - | Chr2:7890416-7890435 | None:intergenic | 35.0% | |
| CAGCGAATTTCAAATCTTCT+CGG | - | Chr2:7891405-7891424 | None:intergenic | 35.0% | |
| CCATAAAAAAGGGCCATATT+GGG | - | Chr2:7890655-7890674 | None:intergenic | 35.0% | |
| GAGACTGCAAAAAATGTTTC+GGG | + | Chr2:7891088-7891107 | MsG0280006913.01.T01:CDS | 35.0% | |
| GGAGTATATGTATACGTTGA+TGG | + | Chr2:7891488-7891507 | MsG0280006913.01.T01:three_prime_UTR | 35.0% | |
| GTGGAATGATAGAAGATTCA+TGG | + | Chr2:7891138-7891157 | MsG0280006913.01.T01:CDS | 35.0% | |
| TAAGTTTGTAACCTTGAGGA+CGG | - | Chr2:7890775-7890794 | None:intergenic | 35.0% | |
| TTAGAAATGCTCTCAACTGA+AGG | - | Chr2:7890343-7890362 | None:intergenic | 35.0% | |
| ! | CATGTAGATATGTTCTAGCT+TGG | + | Chr2:7891271-7891290 | MsG0280006913.01.T01:exon | 35.0% |
| ! | TGCATTGACGGTTTCAATAT+TGG | + | Chr2:7890041-7890060 | MsG0280006913.01.T01:intron | 35.0% |
| ! | TTAGTGTTGCTCAATCTTAC+TGG | + | Chr2:7890474-7890493 | MsG0280006913.01.T01:intron | 35.0% |
| !! | AAGAGAGGTTGATAATGTTC+TGG | + | Chr2:7889449-7889468 | MsG0280006913.01.T01:intron | 35.0% |
| !! | GTAATGGATTTATGGAAGAG+TGG | + | Chr2:7891119-7891138 | MsG0280006913.01.T01:CDS | 35.0% |
| AATGCTCTCAACTGAAGGAT+AGG | - | Chr2:7890338-7890357 | None:intergenic | 40.0% | |
| AGAAGTTGGAACTTCAAGAG+AGG | + | Chr2:7889434-7889453 | MsG0280006913.01.T01:CDS | 40.0% | |
| AGCTCTCATAAAACCCTTTG+TGG | - | Chr2:7889763-7889782 | None:intergenic | 40.0% | |
| AGGATGAGGAAGTTAAGTTC+AGG | + | Chr2:7889486-7889505 | MsG0280006913.01.T01:intron | 40.0% | |
| AGTGGAGATCTAATTCAGCT+CGG | + | Chr2:7889868-7889887 | MsG0280006913.01.T01:CDS | 40.0% | |
| ATGTATCCAGACACCCAATA+TGG | + | Chr2:7890639-7890658 | MsG0280006913.01.T01:intron | 40.0% | |
| GAAGCAAAAGCTGATGAATC+AGG | + | Chr2:7889653-7889672 | MsG0280006913.01.T01:CDS | 40.0% | |
| GAAGTTACGAGCTTGATAAG+TGG | + | Chr2:7891437-7891456 | MsG0280006913.01.T01:three_prime_UTR | 40.0% | |
| GCTTAAGGGAAACAGGTATA+TGG | + | Chr2:7889951-7889970 | MsG0280006913.01.T01:intron | 40.0% | |
| GGTTTGTAGGATTTGTCATC+TGG | + | Chr2:7889796-7889815 | MsG0280006913.01.T01:intron | 40.0% | |
| TAATAGCGTTCATTCTGCCA+TGG | + | Chr2:7891242-7891261 | MsG0280006913.01.T01:CDS | 40.0% | |
| TAATTTCTTAATGGCGTGCC+TGG | + | Chr2:7891219-7891238 | MsG0280006913.01.T01:CDS | 40.0% | |
| TGATGAATCAGGGCTTAGTT+TGG | + | Chr2:7889664-7889683 | MsG0280006913.01.T01:CDS | 40.0% | |
| TGCAAGTTACAACTACGTCT+AGG | - | Chr2:7890552-7890571 | None:intergenic | 40.0% | |
| ! | ATGTTCTGGATCCAATAAGG+TGG | + | Chr2:7889463-7889482 | MsG0280006913.01.T01:intron | 40.0% |
| ! | GCATTTGGTGAATCAAGAAG+TGG | + | Chr2:7889559-7889578 | MsG0280006913.01.T01:intron | 40.0% |
| ! | TAGGATTTGTCATCTGGCTT+TGG | + | Chr2:7889802-7889821 | MsG0280006913.01.T01:intron | 40.0% |
| ! | TGTCCTGAGGAAGATTCTTT+TGG | + | Chr2:7890984-7891003 | MsG0280006913.01.T01:intron | 40.0% |
| !! | AGGATTTGTCATCTGGCTTT+GGG | + | Chr2:7889803-7889822 | MsG0280006913.01.T01:intron | 40.0% |
| !! | TTGCTCAATCTTACTGGCTT+TGG | + | Chr2:7890480-7890499 | MsG0280006913.01.T01:intron | 40.0% |
| !! | TTTCGATGAAAGTGCCGAAA+GGG | + | Chr2:7889687-7889706 | MsG0280006913.01.T01:CDS | 40.0% |
| !!! | CCCAATATGGCCCTTTTTTA+TGG | + | Chr2:7890652-7890671 | MsG0280006913.01.T01:intron | 40.0% |
| !!! | TGGCCCTTTTTTATGGTTGT+AGG | + | Chr2:7890659-7890678 | MsG0280006913.01.T01:intron | 40.0% |
| ATCCAATAAGGTGGAGGATG+AGG | + | Chr2:7889472-7889491 | MsG0280006913.01.T01:intron | 45.0% | |
| ATGAAGTGTAGCAGCCACAA+AGG | + | Chr2:7889746-7889765 | MsG0280006913.01.T01:intron | 45.0% | |
| ATGAGAGCTCACAAGGTGAA+AGG | + | Chr2:7889774-7889793 | MsG0280006913.01.T01:intron | 45.0% | |
| ATTCTCTTGTGGTTGTCCTG+AGG | + | Chr2:7890971-7890990 | MsG0280006913.01.T01:intron | 45.0% | |
| CACAAGGTGAAAGGGTTTGT+AGG | + | Chr2:7889783-7889802 | MsG0280006913.01.T01:intron | 45.0% | |
| GAAAATGCTAGTGCTGCAAG+TGG | + | Chr2:7889850-7889869 | MsG0280006913.01.T01:CDS | 45.0% | |
| GAGGTGTGGTTCAAGCTTAA+GGG | + | Chr2:7889937-7889956 | MsG0280006913.01.T01:CDS | 45.0% | |
| GCAGAATGAACGCTATTACC+AGG | - | Chr2:7891240-7891259 | None:intergenic | 45.0% | |
| GGTTCAAGCTTAAGGGAAAC+AGG | + | Chr2:7889944-7889963 | MsG0280006913.01.T01:CDS | 45.0% | |
| GTTGAAGGGGTTTGAGAAGT+TGG | + | Chr2:7889420-7889439 | MsG0280006913.01.T01:CDS | 45.0% | |
| TCAGTTTCAGACACCCCTTT+CGG | - | Chr2:7889704-7889723 | None:intergenic | 45.0% | |
| TGAAGTGTAGCAGCCACAAA+GGG | + | Chr2:7889747-7889766 | MsG0280006913.01.T01:intron | 45.0% | |
| TGAGAGCTCACAAGGTGAAA+GGG | + | Chr2:7889775-7889794 | MsG0280006913.01.T01:intron | 45.0% | |
| TGAGGTGTGGTTCAAGCTTA+AGG | + | Chr2:7889936-7889955 | MsG0280006913.01.T01:CDS | 45.0% | |
| TTCCTCATCCTCCACCTTAT+TGG | - | Chr2:7889477-7889496 | None:intergenic | 45.0% | |
| TTCTGGATCCAATAAGGTGG+AGG | + | Chr2:7889466-7889485 | MsG0280006913.01.T01:intron | 45.0% | |
| ! | TCATTTTGCAACCGTCCTCA+AGG | + | Chr2:7890761-7890780 | MsG0280006913.01.T01:intron | 45.0% |
| !! | CAATCTTACTGGCTTTGGAC+TGG | + | Chr2:7890485-7890504 | MsG0280006913.01.T01:intron | 45.0% |
| !! | GGGTTTTATGAGAGCTCACA+AGG | + | Chr2:7889767-7889786 | MsG0280006913.01.T01:intron | 45.0% |
| !! | GTTCAGAGTGAGGGTGTTAA+TGG | + | Chr2:7889614-7889633 | MsG0280006913.01.T01:intron | 45.0% |
| !! | GTTTCGATGAAAGTGCCGAA+AGG | + | Chr2:7889686-7889705 | MsG0280006913.01.T01:CDS | 45.0% |
| !! | GTTTCGGGTGTTGCTAGTAA+TGG | + | Chr2:7891103-7891122 | MsG0280006913.01.T01:CDS | 45.0% |
| !! | TTCGATGAAAGTGCCGAAAG+GGG | + | Chr2:7889688-7889707 | MsG0280006913.01.T01:CDS | 45.0% |
| AAAGGGCCATATTGGGTGTC+TGG | - | Chr2:7890648-7890667 | None:intergenic | 50.0% | |
| ATGTTCACTGTGCTGAGGTG+TGG | + | Chr2:7889923-7889942 | MsG0280006913.01.T01:CDS | 50.0% | |
| GATAACTCATCCCGCAGGTT+TGG | + | Chr2:7891169-7891188 | MsG0280006913.01.T01:CDS | 50.0% | |
| TCTGCTCACGTTCAGAGTGA+GGG | + | Chr2:7889605-7889624 | MsG0280006913.01.T01:intron | 50.0% | |
| TGCACATGTTCACTGTGCTG+AGG | + | Chr2:7889918-7889937 | MsG0280006913.01.T01:CDS | 50.0% | |
| TGTGCGTGTAAAGACGAGCT+TGG | + | Chr2:7889892-7889911 | MsG0280006913.01.T01:CDS | 50.0% | |
| !! | CTTACTGGCTTTGGACTGGT+AGG | + | Chr2:7890489-7890508 | MsG0280006913.01.T01:intron | 50.0% |
| !! | GAGTGAGGGTGTTAATGGAG+AGG | + | Chr2:7889619-7889638 | MsG0280006913.01.T01:intron | 50.0% |
| !! | TTTGTCATCTGGCTTTGGGC+AGG | + | Chr2:7889807-7889826 | MsG0280006913.01.T01:intron | 50.0% |
| AACTCATCCCGCAGGTTTGG+TGG | + | Chr2:7891172-7891191 | MsG0280006913.01.T01:CDS | 55.0% | |
| ACGACGATAACTCATCCCGC+AGG | + | Chr2:7891164-7891183 | MsG0280006913.01.T01:CDS | 55.0% | |
| GTCTGCTCACGTTCAGAGTG+AGG | + | Chr2:7889604-7889623 | MsG0280006913.01.T01:intron | 55.0% | |
| ! | AGGGTGTTAATGGAGAGGCG+AGG | + | Chr2:7889624-7889643 | MsG0280006913.01.T01:CDS | 55.0% |
| CCAGCATCCACCAAACCTGC+GGG | - | Chr2:7891182-7891201 | None:intergenic | 60.0% | |
| GCCAGCATCCACCAAACCTG+CGG | - | Chr2:7891183-7891202 | None:intergenic | 60.0% | |
| !! | AGGTTTGGTGGATGCTGGCG+AGG | + | Chr2:7891184-7891203 | MsG0280006913.01.T01:CDS | 60.0% |
| !! | CCCGCAGGTTTGGTGGATGC+TGG | + | Chr2:7891179-7891198 | MsG0280006913.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 7889340 | 7891719 | 7889340 | ID=MsG0280006913.01;Name=MsG0280006913.01 |
| Chr2 | mRNA | 7889340 | 7891719 | 7889340 | ID=MsG0280006913.01.T01;Parent=MsG0280006913.01;Name=MsG0280006913.01.T01;_AED=0.45;_eAED=0.45;_QI=0|0.33|0.25|1|1|1|4|431|195 |
| Chr2 | exon | 7889340 | 7889455 | 7889340 | ID=MsG0280006913.01.T01:exon:7990;Parent=MsG0280006913.01.T01 |
| Chr2 | exon | 7889622 | 7889736 | 7889622 | ID=MsG0280006913.01.T01:exon:7991;Parent=MsG0280006913.01.T01 |
| Chr2 | exon | 7889829 | 7889965 | 7889829 | ID=MsG0280006913.01.T01:exon:7992;Parent=MsG0280006913.01.T01 |
| Chr2 | exon | 7891069 | 7891719 | 7891069 | ID=MsG0280006913.01.T01:exon:7993;Parent=MsG0280006913.01.T01 |
| Chr2 | CDS | 7889340 | 7889455 | 7889340 | ID=MsG0280006913.01.T01:cds;Parent=MsG0280006913.01.T01 |
| Chr2 | CDS | 7889622 | 7889736 | 7889622 | ID=MsG0280006913.01.T01:cds;Parent=MsG0280006913.01.T01 |
| Chr2 | CDS | 7889829 | 7889965 | 7889829 | ID=MsG0280006913.01.T01:cds;Parent=MsG0280006913.01.T01 |
| Chr2 | CDS | 7891069 | 7891288 | 7891069 | ID=MsG0280006913.01.T01:cds;Parent=MsG0280006913.01.T01 |
| Chr2 | three_prime_UTR | 7891289 | 7891719 | 7891289 | ID=MsG0280006913.01.T01:three_prime_utr;Parent=MsG0280006913.01.T01 |
| Gene Sequence |
| Protein sequence |
