AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016137.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016137.01.T01 MTR_3g084170 97.826 92 2 0 52 143 1 92 1.48e-64 192
MsG0380016137.01.T01 MTR_3g084240 96.739 92 3 0 52 143 1 92 2.76e-63 188
MsG0380016137.01.T01 MTR_3g084220 93.478 92 6 0 52 143 1 92 4.94e-61 183
MsG0380016137.01.T01 MTR_3g110038 92.391 92 7 0 52 143 1 92 7.18e-60 180
MsG0380016137.01.T01 MTR_4g050700 88.172 93 10 1 52 143 1 93 4.09e-57 173
MsG0380016137.01.T01 MTR_2g012410 88.172 93 10 1 52 143 1 93 4.09e-57 173
MsG0380016137.01.T01 MTR_3g084150 87.097 93 10 2 52 143 1 92 6.50e-56 170
MsG0380016137.01.T01 MTR_8g461410 86.022 93 11 2 52 143 1 92 1.63e-55 169
MsG0380016137.01.T01 MTR_3g084180 86.022 93 11 2 52 143 1 92 6.21e-55 167
MsG0380016137.01.T01 MTR_3g110032 83.871 93 14 1 52 143 1 93 8.50e-53 162
MsG0380016137.01.T01 MTR_3g084260 82.796 93 15 1 52 143 1 93 4.85e-52 160
MsG0380016137.01.T01 MTR_3g110042 85.227 88 11 2 52 138 1 87 2.78e-50 155
MsG0380016137.01.T01 MTR_4g072250 77.419 93 19 2 52 143 1 92 5.28e-49 152
MsG0380016137.01.T01 MTR_4g072880 74.194 93 23 1 52 143 1 93 6.00e-49 152
MsG0380016137.01.T01 MTR_4g072310 74.194 93 23 1 52 143 1 93 4.50e-48 150
MsG0380016137.01.T01 MTR_3g117630 78.889 90 18 1 55 143 3 92 7.29e-47 147
MsG0380016137.01.T01 MTR_4g072270 73.118 93 24 1 52 143 1 93 8.66e-47 147
MsG0380016137.01.T01 MTR_3g084200 93.056 72 5 0 52 123 1 72 4.70e-46 145
MsG0380016137.01.T01 MTR_4g072230 75.269 93 20 2 52 143 1 91 6.60e-46 144
MsG0380016137.01.T01 MTR_4g072330 74.444 90 21 1 52 141 1 88 4.81e-45 142
MsG0380016137.01.T01 MTR_4g072370 74.444 90 21 1 52 141 1 88 7.05e-45 142
MsG0380016137.01.T01 MTR_4g072740 74.444 90 18 1 52 141 1 85 8.17e-45 142
MsG0380016137.01.T01 MTR_4g072860 72.043 93 25 1 52 143 1 93 8.51e-45 142
MsG0380016137.01.T01 MTR_4g072470 73.333 90 19 1 52 141 1 85 3.11e-44 140
MsG0380016137.01.T01 MTR_4g072870 70.330 91 26 1 52 141 1 91 3.96e-44 140
MsG0380016137.01.T01 MTR_4g072500 73.118 93 23 2 52 143 1 92 4.61e-44 140
MsG0380016137.01.T01 MTR_4g072490 71.111 90 21 1 52 141 1 85 6.61e-44 139
MsG0380016137.01.T01 MTR_4g072240 70.330 91 26 1 52 141 1 91 8.34e-44 139
MsG0380016137.01.T01 MTR_4g072480 69.565 92 28 0 52 143 1 92 2.46e-43 138
MsG0380016137.01.T01 MTR_4g072300 70.330 91 26 1 52 141 1 91 2.49e-43 138
MsG0380016137.01.T01 MTR_4g072580 71.111 90 21 1 52 141 1 85 5.09e-43 137
MsG0380016137.01.T01 MTR_4g072260 68.817 93 28 1 52 143 1 93 5.63e-43 137
MsG0380016137.01.T01 MTR_4g072890 70.330 91 26 1 52 141 1 91 5.98e-43 137
MsG0380016137.01.T01 MTR_4g072220 69.892 93 27 1 52 143 1 93 8.08e-43 137
MsG0380016137.01.T01 MTR_3g084250 70.968 93 25 2 52 143 1 92 9.14e-43 137
MsG0380016137.01.T01 MTR_4g072620 68.478 92 29 0 52 143 1 92 1.01e-42 136
MsG0380016137.01.T01 MTR_4g072830 74.157 89 21 1 52 140 1 87 1.04e-42 136
MsG0380016137.01.T01 MTR_4g072850 72.340 94 24 1 52 143 1 94 1.52e-42 136
MsG0380016137.01.T01 MTR_4g072680 68.478 92 29 0 52 143 1 92 1.58e-42 136
MsG0380016137.01.T01 MTR_4g072570 69.565 92 28 0 52 143 1 92 3.79e-42 135
MsG0380016137.01.T01 MTR_4g072640 73.626 91 22 2 52 141 1 90 5.56e-42 135
MsG0380016137.01.T01 MTR_4g072730 68.132 91 29 0 52 142 1 91 9.20e-42 134
MsG0380016137.01.T01 MTR_4g072630 70.000 90 23 1 52 141 1 86 1.08e-41 134
MsG0380016137.01.T01 MTR_4g072610 72.222 90 19 1 52 141 1 84 1.27e-41 134
MsG0380016137.01.T01 MTR_4g072530 71.429 91 24 2 52 141 1 90 1.47e-41 134
MsG0380016137.01.T01 MTR_4g072465 68.889 90 24 1 52 141 1 86 4.89e-41 132
MsG0380016137.01.T01 MTR_4g072460 66.304 92 31 0 52 143 1 92 7.19e-41 132
MsG0380016137.01.T01 MTR_4g072650 72.222 90 19 2 52 141 1 84 1.28e-40 131
MsG0380016137.01.T01 MTR_3g084210 67.391 92 30 0 52 143 1 92 6.34e-40 129
MsG0380016137.01.T01 MTR_4g072660 67.391 92 25 1 52 143 1 87 1.50e-39 128
MsG0380016137.01.T01 MTR_4g072540 71.111 90 22 1 52 141 1 86 2.09e-39 128
MsG0380016137.01.T01 MTR_4g072670 70.000 90 23 1 52 141 1 86 2.13e-39 128
MsG0380016137.01.T01 MTR_4g072380 70.000 90 23 1 52 141 1 86 8.62e-39 126
MsG0380016137.01.T01 MTR_4g072510 71.111 90 22 1 52 141 1 86 1.05e-38 126
MsG0380016137.01.T01 MTR_4g072820 68.889 90 23 2 52 141 1 85 1.78e-38 125
MsG0380016137.01.T01 MTR_4g072720 70.000 90 23 1 52 141 1 86 2.01e-38 125
MsG0380016137.01.T01 MTR_4g072600 70.115 87 21 1 52 138 1 82 2.14e-38 125
MsG0380016137.01.T01 MTR_3g084190 65.217 92 32 0 52 143 1 92 5.50e-38 124
MsG0380016137.01.T01 MTR_5g008360 77.027 74 17 0 70 143 10 83 9.92e-38 124
MsG0380016137.01.T01 MTR_8g461420 65.556 90 31 0 52 141 1 90 1.21e-37 124
MsG0380016137.01.T01 MTR_4g072590 70.000 90 22 1 52 141 1 85 1.46e-37 123
MsG0380016137.01.T01 MTR_4g072940 71.111 90 24 1 54 141 33 122 2.27e-37 124
MsG0380016137.01.T01 MTR_3g084230 65.556 90 31 0 52 141 1 90 3.93e-37 122
MsG0380016137.01.T01 MTR_3g110045 50.704 142 68 2 3 143 11 151 6.34e-37 124
MsG0380016137.01.T01 MTR_8g461400 67.391 92 4 1 52 143 1 66 9.07e-37 120
MsG0380016137.01.T01 MTR_5g008370 83.824 68 11 0 75 142 24 91 1.10e-36 123
MsG0380016137.01.T01 MTR_3g084160 64.130 92 33 0 52 143 1 92 1.63e-36 121
MsG0380016137.01.T01 MTR_4g072690 67.778 90 24 1 52 141 1 85 1.22e-35 118
MsG0380016137.01.T01 MTR_4g072550 63.043 92 31 1 55 143 12 103 3.13e-35 118
MsG0380016137.01.T01 MTR_5g008350 67.089 79 21 1 52 130 1 74 7.67e-35 116
MsG0380016137.01.T01 MTR_4g072450 66.667 90 25 1 52 141 1 85 9.22e-35 116
MsG0380016137.01.T01 MTR_4g072980 57.895 95 37 2 52 143 1 95 6.01e-34 114
MsG0380016137.01.T01 MTR_4g072560 54.082 98 37 3 52 141 1 98 2.03e-31 108
MsG0380016137.01.T01 MTR_4g072770 74.242 66 17 0 76 141 15 80 3.39e-31 107
MsG0380016137.01.T01 MTR_4g072290 58.696 92 25 2 52 143 1 79 3.90e-30 104
MsG0380016137.01.T01 MTR_4g072910 65.278 72 25 0 70 141 29 100 6.61e-30 104
MsG0380016137.01.T01 MTR_3g117640 51.485 101 39 2 52 142 1 101 1.43e-29 103
MsG0380016137.01.T01 MTR_3g110035 68.182 66 21 0 78 143 73 138 3.50e-27 99.0
MsG0380016137.01.T01 MTR_4g072280 62.667 75 27 1 52 125 1 75 1.46e-25 92.8
MsG0380016137.01.T01 MTR_4g072750 66.216 74 21 2 52 122 1 73 2.17e-25 92.8
MsG0380016137.01.T01 MTR_3g113310 60.000 65 25 1 74 138 40 103 7.15e-24 89.4
MsG0380016137.01.T01 MTR_4g072930 49.412 85 38 2 62 141 26 110 1.47e-23 89.0
MsG0380016137.01.T01 MTR_3g117610 61.538 65 24 1 74 138 43 106 7.83e-23 87.0
MsG0380016137.01.T01 MTR_6g077850 55.224 67 30 0 75 141 33 99 2.20e-22 85.5
MsG0380016137.01.T01 MTR_4g072190 50.602 83 39 2 56 138 17 97 4.81e-22 84.7
MsG0380016137.01.T01 MTR_4g072840 52.874 87 11 4 52 138 1 57 9.91e-20 77.4
MsG0380016137.01.T01 MTR_8g076040 54.688 64 28 1 75 138 40 102 1.28e-18 75.9
MsG0380016137.01.T01 MTR_5g021820 54.688 64 28 1 75 138 39 101 1.37e-18 75.9
MsG0380016137.01.T01 MTR_2g043960 56.452 62 26 1 75 136 75 135 1.50e-18 77.4
MsG0380016137.01.T01 MTR_4g124750 54.688 64 28 1 75 138 68 130 6.36e-18 75.5
MsG0380016137.01.T01 MTR_1g094750 45.455 99 48 3 42 136 13 109 1.21e-17 73.9
MsG0380016137.01.T01 MTR_1g009150 58.065 62 25 1 75 136 70 130 5.72e-17 73.6
MsG0380016137.01.T01 MTR_4g005310 46.053 76 40 1 62 136 48 123 1.16e-16 72.4
MsG0380016137.01.T01 MTR_3g109160 53.731 67 30 1 76 142 69 134 8.87e-15 67.8
MsG0380016137.01.T01 MTR_4g005320 52.459 61 28 1 76 136 70 129 9.06e-15 67.4
MsG0380016137.01.T01 MTR_8g461210 48.571 70 33 2 75 142 34 102 2.95e-14 65.1
MsG0380016137.01.T01 MTR_1g024085 49.254 67 33 1 67 133 28 93 3.14e-14 65.9
MsG0380016137.01.T01 MTR_4g072160 52.381 63 27 2 75 136 36 96 7.12e-14 64.7
MsG0380016137.01.T01 MTR_3g098970 35.000 80 51 1 64 143 41 119 1.03e-13 64.3
MsG0380016137.01.T01 MTR_7g118010 48.485 66 31 2 75 138 22 86 1.07e-13 63.2
MsG0380016137.01.T01 MTR_0388s0020 42.857 70 36 2 62 128 61 129 1.42e-13 63.9
MsG0380016137.01.T01 MTR_3g105900 80.556 36 7 0 75 110 1171 1206 1.57e-13 67.0
MsG0380016137.01.T01 MTR_3g092220 44.928 69 35 2 67 133 24 91 3.12e-13 62.4
MsG0380016137.01.T01 MTR_7g405740 34.783 115 56 2 40 136 13 126 6.35e-13 62.8
MsG0380016137.01.T01 MTR_1g061570 47.059 68 35 1 75 142 18 84 7.42e-13 61.6
MsG0380016137.01.T01 MTR_7g101740 48.438 64 32 1 75 138 39 101 1.67e-12 60.5
MsG0380016137.01.T01 MTR_4g021810 45.570 79 39 3 56 133 8 83 2.73e-12 59.7
MsG0380016137.01.T01 MTR_3g097120 41.975 81 38 2 69 141 2 81 2.77e-12 59.7
MsG0380016137.01.T01 MTR_8g026730 43.939 66 34 2 75 138 26 90 2.81e-12 59.7
MsG0380016137.01.T01 MTR_1g063950 45.161 62 33 1 75 136 47 107 6.09e-12 59.3
MsG0380016137.01.T01 MTR_8g101520 37.500 88 49 2 59 141 28 114 7.36e-11 57.0
MsG0380016137.01.T01 MTR_1g059770 37.662 77 41 2 62 138 41 110 8.95e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016137.01.T01 AT4G38840 75.000 68 16 1 75 141 32 99 2.24e-35 118
MsG0380016137.01.T01 AT5G18020 65.789 76 25 1 67 141 15 90 6.33e-33 112
MsG0380016137.01.T01 AT5G18050 64.474 76 26 1 67 141 15 90 5.17e-32 109
MsG0380016137.01.T01 AT5G18060 64.474 76 26 1 67 141 15 90 7.09e-32 109
MsG0380016137.01.T01 AT5G18080 70.149 67 19 1 76 141 24 90 1.31e-31 108
MsG0380016137.01.T01 AT2G21200 66.667 72 23 1 70 140 15 86 5.80e-31 107
MsG0380016137.01.T01 AT5G18030 68.657 67 20 1 76 141 22 88 8.06e-31 106
MsG0380016137.01.T01 AT4G38825 63.889 72 25 1 71 141 18 89 3.46e-30 105
MsG0380016137.01.T01 AT2G21210 58.974 78 30 1 66 141 18 95 7.32e-30 104
MsG0380016137.01.T01 AT5G18010 61.842 76 28 1 67 141 15 90 1.28e-29 103
MsG0380016137.01.T01 AT4G34770 66.667 75 23 1 70 142 29 103 1.99e-29 103
MsG0380016137.01.T01 AT2G21210 58.974 78 30 1 66 141 85 162 4.56e-29 104
MsG0380016137.01.T01 AT3G03840 63.014 73 25 1 72 142 23 95 1.23e-28 101
MsG0380016137.01.T01 AT3G03820 55.682 88 36 1 58 142 9 96 2.60e-28 100
MsG0380016137.01.T01 AT3G03850 66.176 68 21 1 77 142 26 93 1.34e-27 98.6
MsG0380016137.01.T01 AT4G34800 53.763 93 36 3 52 141 1 89 2.48e-27 97.8
MsG0380016137.01.T01 AT4G38850 63.235 68 22 1 75 139 20 87 2.74e-27 97.8
MsG0380016137.01.T01 AT4G34810 64.789 71 20 2 75 140 47 117 5.61e-27 97.8
MsG0380016137.01.T01 AT3G03830 51.648 91 36 2 59 141 2 92 2.70e-25 92.8
MsG0380016137.01.T01 AT4G13790 54.054 74 32 1 68 139 17 90 1.64e-24 90.5
MsG0380016137.01.T01 AT4G34780 57.895 76 29 1 68 140 20 95 2.58e-24 90.5
MsG0380016137.01.T01 AT4G38860 60.000 65 26 0 74 138 38 102 6.53e-23 87.0
MsG0380016137.01.T01 AT4G34790 61.538 65 23 1 76 138 39 103 7.64e-23 87.0
MsG0380016137.01.T01 AT1G75580 55.405 74 32 1 65 138 33 105 1.34e-22 86.3
MsG0380016137.01.T01 AT4G34760 58.462 65 26 1 74 138 41 104 3.93e-21 82.4
MsG0380016137.01.T01 AT2G21220 55.385 65 28 1 74 138 38 101 1.84e-20 80.9
MsG0380016137.01.T01 AT4G36110 54.545 66 29 1 75 140 39 103 1.97e-19 78.2
MsG0380016137.01.T01 AT2G16580 55.385 65 28 1 74 138 42 105 5.03e-19 77.0
MsG0380016137.01.T01 AT3G43120 54.839 62 27 1 75 136 78 138 7.01e-19 78.2
MsG0380016137.01.T01 AT3G20220 54.545 66 28 2 76 140 47 111 1.20e-18 76.6
MsG0380016137.01.T01 AT2G18010 53.030 66 30 1 75 140 47 111 2.25e-18 75.5
MsG0380016137.01.T01 AT1G19830 60.000 60 23 1 74 133 46 104 3.80e-18 75.1
MsG0380016137.01.T01 AT5G20810 56.452 62 26 1 75 136 78 138 5.73e-18 75.9
MsG0380016137.01.T01 AT5G20810 56.452 62 26 1 75 136 78 138 1.43e-17 75.5
MsG0380016137.01.T01 AT5G10990 48.611 72 36 1 62 133 27 97 6.98e-16 70.1
MsG0380016137.01.T01 AT4G34750 41.026 78 45 1 61 138 22 98 1.15e-15 69.7
MsG0380016137.01.T01 AT4G34750 41.026 78 45 1 61 138 22 98 1.15e-15 69.7
MsG0380016137.01.T01 AT1G75590 50.704 71 31 2 63 133 32 98 2.19e-15 68.9
MsG0380016137.01.T01 AT1G19840 48.611 72 36 1 62 133 27 97 6.54e-15 67.8
MsG0380016137.01.T01 AT5G66260 43.478 92 48 2 53 141 8 98 7.28e-15 66.2
MsG0380016137.01.T01 AT4G31320 54.098 61 27 1 76 136 80 139 2.37e-14 67.0
MsG0380016137.01.T01 AT2G24400 53.030 66 30 1 71 136 59 123 3.91e-14 66.2
MsG0380016137.01.T01 AT2G46690 41.026 78 42 2 68 142 16 92 5.67e-14 64.3
MsG0380016137.01.T01 AT3G51200 50.820 61 28 2 75 134 38 97 1.88e-13 62.8
MsG0380016137.01.T01 AT3G61900 39.286 84 47 2 61 141 15 97 3.75e-13 62.8
MsG0380016137.01.T01 AT2G37030 47.619 63 32 1 75 137 48 109 9.21e-13 61.2
MsG0380016137.01.T01 AT3G12830 38.667 75 45 1 62 136 36 109 8.95e-12 58.9
MsG0380016137.01.T01 AT3G60690 42.029 69 36 2 76 141 88 155 1.37e-11 59.3
MsG0380016137.01.T01 AT4G00880 49.231 65 30 2 76 138 28 91 1.55e-11 58.2
MsG0380016137.01.T01 AT2G45210 39.726 73 40 2 71 140 74 145 1.88e-11 58.9
MsG0380016137.01.T01 AT5G53590 42.029 69 34 2 75 138 45 112 4.05e-11 57.4
MsG0380016137.01.T01 AT4G09530 43.836 73 32 3 64 133 22 88 4.97e-11 56.2

Find 36 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAATACTTTCGATGTT+TGG 0.306604 3:+79505152 None:intergenic
GTTCTTCAAAACATTTGAAA+TGG 0.307146 3:-79505221 MsG0380016137.01.T01:CDS
ATGTTTATAAATTATAAAAC+TGG 0.342754 3:-79504702 MsG0380016137.01.T01:three_prime_UTR
CATATTACTTCTCGCTTCAA+TGG 0.344439 3:-79504953 MsG0380016137.01.T01:CDS
CTGAAATGGCAAATTCATTC+AGG 0.347719 3:-79504803 MsG0380016137.01.T01:three_prime_UTR
TTAGAATTGTCCATCTGAAA+TGG 0.398482 3:-79504817 MsG0380016137.01.T01:three_prime_UTR
TTCTTCAAAACATTTGAAAT+GGG 0.419215 3:-79505220 MsG0380016137.01.T01:CDS
GTCTAACAGCAGCAGGTAAA+CGG 0.436848 3:+79505194 None:intergenic
TTTACCTGCTGCTGTTAGAC+GGG 0.437465 3:-79505191 MsG0380016137.01.T01:CDS
GTTTACCTGCTGCTGTTAGA+CGG 0.453210 3:-79505192 MsG0380016137.01.T01:CDS
ATTTATAAACATAAGCATAT+AGG 0.459256 3:+79504713 None:intergenic
AGTCAAGCCGAGGAAGAATT+CGG 0.460318 3:-79505031 MsG0380016137.01.T01:CDS
AATGAATTTGCCATTTCAGA+TGG 0.464131 3:+79504807 None:intergenic
ATCACATGGCACTGTCTTGG+AGG 0.472151 3:-79506496 None:intergenic
ATGATCACATGGCACTGTCT+TGG 0.475421 3:-79506499 None:intergenic
ATATTACTTCTCGCTTCAAT+GGG 0.480545 3:-79504952 MsG0380016137.01.T01:CDS
GTCATATCCGAATTCTTCCT+CGG 0.504640 3:+79505024 None:intergenic
GGAATTGTGAGGCCGCCCAT+TGG 0.522416 3:+79504998 None:intergenic
GAAGCCCGTCTAACAGCAGC+AGG 0.534003 3:+79505187 None:intergenic
TTCGGATATGACCATCCAAT+GGG 0.541939 3:-79505013 MsG0380016137.01.T01:CDS
TTGTGAGGCCGCCCATTGGA+TGG 0.552821 3:+79505002 None:intergenic
GGCTATCTTGCAGTGTACGT+TGG 0.552838 3:-79505121 MsG0380016137.01.T01:CDS
TACACTGCAAGATAGCCCTT+TGG 0.556003 3:+79505127 None:intergenic
AAAGTATTGAATGTGCCAAA+GGG 0.569914 3:-79505142 MsG0380016137.01.T01:CDS
GAAAGTATTGAATGTGCCAA+AGG 0.571367 3:-79505143 MsG0380016137.01.T01:CDS
AAGAAAACGTCTTCTGTGCA+AGG 0.577878 3:+79504977 None:intergenic
ATTCGGATATGACCATCCAA+TGG 0.589403 3:-79505014 MsG0380016137.01.T01:CDS
ACAATTCTAAACCATTCCTA+AGG 0.590282 3:+79504830 None:intergenic
TTCTAAACCATTCCTAAGGT+AGG 0.619391 3:+79504834 None:intergenic
AAACTTGTTGAGTCAAGCCG+AGG 0.626433 3:-79505041 MsG0380016137.01.T01:CDS
GCTTGGTTCAAGTATGACGT+GGG 0.632091 3:+79505073 None:intergenic
AGCTTGGTTCAAGTATGACG+TGG 0.646004 3:+79505072 None:intergenic
GGATATGACCATCCAATGGG+CGG 0.678665 3:-79505010 MsG0380016137.01.T01:CDS
CTTGGTTCAAGTATGACGTG+GGG 0.704961 3:+79505074 None:intergenic
ACGTTGGAGAGCAAATGAAG+CGG 0.725765 3:-79505105 MsG0380016137.01.T01:CDS
CTTCTGTGCAAGGAATTGTG+AGG 0.726703 3:+79504987 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTTATAAATTATAAAAC+TGG - Chr3:79506482-79506501 MsG0380016137.01.T01:CDS 10.0%
!! AAAAATGATCATAATTCATA+AGG - Chr3:79505109-79505128 MsG0380016137.01.T01:CDS 15.0%
!! ATTTATAAACATAAGCATAT+AGG + Chr3:79506474-79506493 None:intergenic 15.0%
!!! TTTGTTATTTCTTGATAATA+AGG + Chr3:79505241-79505260 None:intergenic 15.0%
!! AATACATTCAAAAACTCAAT+GGG - Chr3:79506446-79506465 MsG0380016137.01.T01:CDS 20.0%
!! AATATTTCTCATAATTCTTC+AGG - Chr3:79505587-79505606 MsG0380016137.01.T01:intron 20.0%
!! AATCTTATTCATAATTCATG+AGG - Chr3:79505050-79505069 MsG0380016137.01.T01:CDS 20.0%
!!! ATCATAATTCATAAGGTATT+TGG - Chr3:79505116-79505135 MsG0380016137.01.T01:CDS 20.0%
!!! GTTTTGATATCAGAAATTTT+TGG - Chr3:79505343-79505362 MsG0380016137.01.T01:intron 20.0%
!!! TTCTTCAAAACATTTGAAAT+GGG - Chr3:79505964-79505983 MsG0380016137.01.T01:intron 20.0%
! AACTTATTGATCCTTAATAG+TGG - Chr3:79505753-79505772 MsG0380016137.01.T01:intron 25.0%
! AATCAACCATGAAATATACT+AGG - Chr3:79504832-79504851 MsG0380016137.01.T01:three_prime_UTR 25.0%
! ACTATACTTATAGTTTCCAA+GGG + Chr3:79505864-79505883 None:intergenic 25.0%
! ATTTCTGATATCAAAACTGT+AGG + Chr3:79505340-79505359 None:intergenic 25.0%
! CAATTGTGCATATTTAGTTA+TGG + Chr3:79505546-79505565 None:intergenic 25.0%
! GAATACATTCAAAAACTCAA+TGG - Chr3:79506445-79506464 MsG0380016137.01.T01:CDS 25.0%
! GATAATAAGGAGATAGAAAT+TGG + Chr3:79505228-79505247 None:intergenic 25.0%
! GTTCTTCAAAACATTTGAAA+TGG - Chr3:79505963-79505982 MsG0380016137.01.T01:intron 25.0%
!! ATAACAAGTATTTTGTCCTT+GGG - Chr3:79504774-79504793 MsG0380016137.01.T01:three_prime_UTR 25.0%
!! GTCTGCTAAATTAATTTTGT+AGG - Chr3:79505311-79505330 MsG0380016137.01.T01:intron 25.0%
!! TAATTCATAAGGTATTTGGT+AGG - Chr3:79505120-79505139 MsG0380016137.01.T01:CDS 25.0%
AAAAGTGAATCGAACCAATT+AGG - Chr3:79505143-79505162 MsG0380016137.01.T01:CDS 30.0%
ACAATCATTACTCTAGCAAA+TGG - Chr3:79505827-79505846 MsG0380016137.01.T01:intron 30.0%
ACAATTCTAAACCATTCCTA+AGG + Chr3:79506357-79506376 None:intergenic 30.0%
AGTAATGATTGTTTAGAGGA+CGG + Chr3:79505819-79505838 None:intergenic 30.0%
ATATTACTTCTCGCTTCAAT+GGG - Chr3:79506232-79506251 MsG0380016137.01.T01:intron 30.0%
ATTTAGTTATGGTCCTTGAA+GGG + Chr3:79505535-79505554 None:intergenic 30.0%
CACTATACTTATAGTTTCCA+AGG + Chr3:79505865-79505884 None:intergenic 30.0%
CATTCAATACTTTCGATGTT+TGG + Chr3:79506035-79506054 None:intergenic 30.0%
CTAGAGTAATGATTGTTTAG+AGG + Chr3:79505823-79505842 None:intergenic 30.0%
GTCAATCTTGAATAATGACT+TGG - Chr3:79505262-79505281 MsG0380016137.01.T01:CDS 30.0%
TATTTAGTTATGGTCCTTGA+AGG + Chr3:79505536-79505555 None:intergenic 30.0%
TTAGAATTGTCCATCTGAAA+TGG - Chr3:79506367-79506386 MsG0380016137.01.T01:intron 30.0%
! AATGAATTTGCCATTTCAGA+TGG + Chr3:79506380-79506399 None:intergenic 30.0%
! CATAACAAGTATTTTGTCCT+TGG - Chr3:79504773-79504792 MsG0380016137.01.T01:three_prime_UTR 30.0%
! TTGTTTCATTTTCCTACCTT+AGG - Chr3:79506338-79506357 MsG0380016137.01.T01:intron 30.0%
!! AAAGTATTGAATGTGCCAAA+GGG - Chr3:79506042-79506061 MsG0380016137.01.T01:intron 30.0%
!!! ACAAGTTTTGAAATGAAGCT+TGG + Chr3:79506131-79506150 None:intergenic 30.0%
!!! ATATCAGAAATTTTTGGCCT+TGG - Chr3:79505349-79505368 MsG0380016137.01.T01:intron 30.0%
AAGAGTGAAAACACGAAACA+CGG + Chr3:79504932-79504951 None:intergenic 35.0%
AGCTGTTGCAAGTATGTATA+TGG - Chr3:79504856-79504875 MsG0380016137.01.T01:three_prime_UTR 35.0%
ATTTGTGATTGTTGTGAAGG+AGG + Chr3:79505889-79505908 None:intergenic 35.0%
CAGCTTCCTAGTATATTTCA+TGG + Chr3:79504841-79504860 None:intergenic 35.0%
CATACCTCAAACTAACAGTA+TGG - Chr3:79505202-79505221 MsG0380016137.01.T01:CDS 35.0%
CATATTACTTCTCGCTTCAA+TGG - Chr3:79506231-79506250 MsG0380016137.01.T01:intron 35.0%
CATGTGATCTCTTATCTCAT+GGG - Chr3:79505791-79505810 MsG0380016137.01.T01:intron 35.0%
CTGAAATGGCAAATTCATTC+AGG - Chr3:79506381-79506400 MsG0380016137.01.T01:intron 35.0%
GTAATGATTGTTTAGAGGAC+GGG + Chr3:79505818-79505837 None:intergenic 35.0%
TAACAACTACCAAGCTAGTT+GGG + Chr3:79505030-79505049 None:intergenic 35.0%
TAAGTTGTGTTATCAATGCG+AGG - Chr3:79505624-79505643 MsG0380016137.01.T01:intron 35.0%
TAATGATTGTTTAGAGGACG+GGG + Chr3:79505817-79505836 None:intergenic 35.0%
TCTGATATCAAAACTGTAGG+CGG + Chr3:79505337-79505356 None:intergenic 35.0%
TGTCTTAGATGCCACTATTA+AGG + Chr3:79505767-79505786 None:intergenic 35.0%
TTAACAACTACCAAGCTAGT+TGG + Chr3:79505031-79505050 None:intergenic 35.0%
TTCTAAACCATTCCTAAGGT+AGG + Chr3:79506353-79506372 None:intergenic 35.0%
TTTAAATTCTGCTAGATCCG+TGG + Chr3:79504955-79504974 None:intergenic 35.0%
TTTCAGAAATGCATCAGACA+TGG + Chr3:79505660-79505679 None:intergenic 35.0%
! AAGTATTTTGTCCTTGGGAT+AGG - Chr3:79504779-79504798 MsG0380016137.01.T01:three_prime_UTR 35.0%
! AATGGATTTCAAGAAACCCT+TGG - Chr3:79505845-79505864 MsG0380016137.01.T01:intron 35.0%
! CATACTGTTAGTTTGAGGTA+TGG + Chr3:79505204-79505223 None:intergenic 35.0%
! GTGATTTGTGATTGTTGTGA+AGG + Chr3:79505892-79505911 None:intergenic 35.0%
! TCATTTTCCTACCTTAGGAA+TGG - Chr3:79506343-79506362 MsG0380016137.01.T01:intron 35.0%
!! GAAAGTATTGAATGTGCCAA+AGG - Chr3:79506041-79506060 MsG0380016137.01.T01:intron 35.0%
AACGACCAGCTTTCTTAATG+TGG - Chr3:79505380-79505399 MsG0380016137.01.T01:intron 40.0%
AAGAAAACGTCTTCTGTGCA+AGG + Chr3:79506210-79506229 None:intergenic 40.0%
ACGACCAGCTTTCTTAATGT+GGG - Chr3:79505381-79505400 MsG0380016137.01.T01:intron 40.0%
ACTTCACTGCGTTAAAAAGC+CGG - Chr3:79505001-79505020 MsG0380016137.01.T01:CDS 40.0%
ATGTCCCACATTAAGAAAGC+TGG + Chr3:79505388-79505407 None:intergenic 40.0%
ATTCGGATATGACCATCCAA+TGG - Chr3:79506170-79506189 MsG0380016137.01.T01:intron 40.0%
CCATGAGATAAGAGATCACA+TGG + Chr3:79505793-79505812 None:intergenic 40.0%
CCATGTGATCTCTTATCTCA+TGG - Chr3:79505790-79505809 MsG0380016137.01.T01:intron 40.0%
CTGGTCGTTACAATTTACCA+AGG + Chr3:79505369-79505388 None:intergenic 40.0%
GATCACATGATACTGTCAAG+AGG + Chr3:79505463-79505482 None:intergenic 40.0%
GTCATATCCGAATTCTTCCT+CGG + Chr3:79506163-79506182 None:intergenic 40.0%
TTCGGATATGACCATCCAAT+GGG - Chr3:79506171-79506190 MsG0380016137.01.T01:intron 40.0%
! CTGTGTGATGGAAACCTAAT+TGG + Chr3:79505160-79505179 None:intergenic 40.0%
! TTCGTGTTTTCACTCTTCCA+CGG - Chr3:79504935-79504954 MsG0380016137.01.T01:exon 40.0%
! TTGGCCATACTGTTAGTTTG+AGG + Chr3:79505209-79505228 None:intergenic 40.0%
ACGTTGGAGAGCAAATGAAG+CGG - Chr3:79506079-79506098 MsG0380016137.01.T01:intron 45.0%
AGCTTGGTTCAAGTATGACG+TGG + Chr3:79506115-79506134 None:intergenic 45.0%
AGTCAAGCCGAGGAAGAATT+CGG - Chr3:79506153-79506172 MsG0380016137.01.T01:intron 45.0%
AGTGAAAACACGAAACACGG+TGG + Chr3:79504929-79504948 None:intergenic 45.0%
CTTCTGTGCAAGGAATTGTG+AGG + Chr3:79506200-79506219 None:intergenic 45.0%
CTTGGTTCAAGTATGACGTG+GGG + Chr3:79506113-79506132 None:intergenic 45.0%
GACAACAGACAAGCAGACTA+TGG + Chr3:79505502-79505521 None:intergenic 45.0%
GCTTGGTTCAAGTATGACGT+GGG + Chr3:79506114-79506133 None:intergenic 45.0%
GTCTAACAGCAGCAGGTAAA+CGG + Chr3:79505993-79506012 None:intergenic 45.0%
GTTTACCTGCTGCTGTTAGA+CGG - Chr3:79505992-79506011 MsG0380016137.01.T01:intron 45.0%
TACACTGCAAGATAGCCCTT+TGG + Chr3:79506060-79506079 None:intergenic 45.0%
TGTCCTTGGGATAGGAAAAC+TGG - Chr3:79504787-79504806 MsG0380016137.01.T01:three_prime_UTR 45.0%
TTTACCTGCTGCTGTTAGAC+GGG - Chr3:79505993-79506012 MsG0380016137.01.T01:intron 45.0%
! CAACCAGTTTTCCTATCCCA+AGG + Chr3:79504793-79504812 None:intergenic 45.0%
! GGAGGTTTTCGCTTAGGATT+AGG - Chr3:79504706-79504725 MsG0380016137.01.T01:three_prime_UTR 45.0%
! TGTCTTGGAGGTTTTCGCTT+AGG - Chr3:79504700-79504719 MsG0380016137.01.T01:three_prime_UTR 45.0%
!! AAACTTGTTGAGTCAAGCCG+AGG - Chr3:79506143-79506162 MsG0380016137.01.T01:intron 45.0%
AAGAGTGAAAACCCCACCTC+TGG + Chr3:79505729-79505748 None:intergenic 50.0%
ACGTGAGCCTTTCATTCCAG+AGG - Chr3:79505710-79505729 MsG0380016137.01.T01:intron 50.0%
AGCCTTTCATTCCAGAGGTG+GGG - Chr3:79505715-79505734 MsG0380016137.01.T01:intron 50.0%
CTTGTCTGTTGTCTCCAACC+TGG - Chr3:79505509-79505528 MsG0380016137.01.T01:intron 50.0%
GAGCCTTTCATTCCAGAGGT+GGG - Chr3:79505714-79505733 MsG0380016137.01.T01:intron 50.0%
GGATATGACCATCCAATGGG+CGG - Chr3:79506174-79506193 MsG0380016137.01.T01:intron 50.0%
GGCTATCTTGCAGTGTACGT+TGG - Chr3:79506063-79506082 MsG0380016137.01.T01:intron 50.0%
GGTGTCAACCACTCATCTGT+GGG + Chr3:79505183-79505202 None:intergenic 50.0%
TACCAAGCTAGTTGGGACAC+CGG + Chr3:79505023-79505042 None:intergenic 50.0%
TGAGCCTTTCATTCCAGAGG+TGG - Chr3:79505713-79505732 MsG0380016137.01.T01:intron 50.0%
! TGGTGTCAACCACTCATCTG+TGG + Chr3:79505184-79505203 None:intergenic 50.0%
!! AACCCCACCTCTGGAATGAA+AGG + Chr3:79505720-79505739 None:intergenic 50.0%
GTTATGGTCCTTGAAGGGCC+AGG + Chr3:79505530-79505549 None:intergenic 55.0%
TCACACAGCCCACAGATGAG+TGG - Chr3:79505172-79505191 MsG0380016137.01.T01:CDS 55.0%
! CTCATCTGTGGGCTGTGTGA+TGG + Chr3:79505172-79505191 None:intergenic 55.0%
AGCCGGTGTCCCAACTAGCT+TGG - Chr3:79505018-79505037 MsG0380016137.01.T01:CDS 60.0%
GAAGCCCGTCTAACAGCAGC+AGG + Chr3:79506000-79506019 None:intergenic 60.0%
GGAATTGTGAGGCCGCCCAT+TGG + Chr3:79506189-79506208 None:intergenic 60.0%
GTCTCCAACCTGGCCCTTCA+AGG - Chr3:79505519-79505538 MsG0380016137.01.T01:intron 60.0%
TGGTCCTTGAAGGGCCAGGT+TGG + Chr3:79505526-79505545 None:intergenic 60.0%
TTGTGAGGCCGCCCATTGGA+TGG + Chr3:79506185-79506204 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 79504693 79506513 79504693 ID=MsG0380016137.01;Name=MsG0380016137.01
Chr3 mRNA 79504693 79506513 79504693 ID=MsG0380016137.01.T01;Parent=MsG0380016137.01;Name=MsG0380016137.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0|0|1|0|0|2|253|143
Chr3 exon 79504693 79505289 79504693 ID=MsG0380016137.01.T01:exon:10342;Parent=MsG0380016137.01.T01
Chr3 exon 79506426 79506513 79506426 ID=MsG0380016137.01.T01:exon:10341;Parent=MsG0380016137.01.T01
Chr3 CDS 79506426 79506513 79506426 ID=MsG0380016137.01.T01:cds;Parent=MsG0380016137.01.T01
Chr3 CDS 79504946 79505289 79504946 ID=MsG0380016137.01.T01:cds;Parent=MsG0380016137.01.T01
Chr3 three_prime_UTR 79504693 79504945 79504693 ID=MsG0380016137.01.T01:three_prime_utr;Parent=MsG0380016137.01.T01
Gene Sequence

>MsG0380016137.01.T01

ATGGCACTGTCTTGGAGGTTTTCGCTTAGGATTAGGCTTGTGAAAGAGACTTGTTTCACGTGTTTCAGACAATCTCTAAACATAACAACAATCAAACTTTTATACATTCATCTTACATCTGAGAAATTCATCTTGTTCTTCAAAACATTTGAAATGGGTTTCCGTTTACCTGCTGCTGTTAGACGGGCTTCATTCAGCAGTAGCCAAACATCGAAAGTATTGAATGTGCCAAAGGGCTATCTTGCAGTGTACGTTGGAGAGCAAATGAAGCGGTTTGTTATCCCCACGTCATACTTGAACCAAGCTTCATTTCAAAACTTGTTGAGTCAAGCCGAGGAAGAATTCGGATATGACCATCCAATGGGCGGCCTCACAATTCCTTGCACAGAAGACGTTTTCTTGCATATTACTTCTCGCTTCAATGGGCTATAA

Protein sequence

>MsG0380016137.01.T01

MALSWRFSLRIRLVKETCFTCFRQSLNITTIKLLYIHLTSEKFILFFKTFEMGFRLPAAVRRASFSSSQTSKVLNVPKGYLAVYVGEQMKRFVIPTSYLNQASFQNLLSQAEEEFGYDHPMGGLTIPCTEDVFLHITSRFNGL*