AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018089.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018089.01.T02 MTR_4g005070 54.751 221 51 4 33 207 372 589 9.89e-66 213
MsG0480018089.01.T03 MTR_4g005070 54.751 221 51 4 33 207 372 589 9.89e-66 213
MsG0480018089.01.T01 MTR_4g005070 54.751 221 51 4 33 207 372 589 9.89e-66 213
MsG0480018089.01.T04 MTR_4g005070 54.751 221 51 4 33 207 372 589 9.89e-66 213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018089.01.T02 AT1G16720 49.541 218 67 3 33 207 381 598 1.08e-58 194
MsG0480018089.01.T02 AT1G16720 43.028 251 67 3 33 207 381 631 1.49e-53 181
MsG0480018089.01.T02 AT1G16720 48.876 178 48 3 33 167 381 558 8.12e-44 154
MsG0480018089.01.T03 AT1G16720 49.541 218 67 3 33 207 381 598 1.08e-58 194
MsG0480018089.01.T03 AT1G16720 43.028 251 67 3 33 207 381 631 1.49e-53 181
MsG0480018089.01.T03 AT1G16720 48.876 178 48 3 33 167 381 558 8.12e-44 154
MsG0480018089.01.T01 AT1G16720 49.541 218 67 3 33 207 381 598 1.08e-58 194
MsG0480018089.01.T01 AT1G16720 43.028 251 67 3 33 207 381 631 1.49e-53 181
MsG0480018089.01.T01 AT1G16720 48.876 178 48 3 33 167 381 558 8.12e-44 154
MsG0480018089.01.T04 AT1G16720 49.541 218 67 3 33 207 381 598 1.08e-58 194
MsG0480018089.01.T04 AT1G16720 43.028 251 67 3 33 207 381 631 1.49e-53 181
MsG0480018089.01.T04 AT1G16720 48.876 178 48 3 33 167 381 558 8.12e-44 154

Find 41 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGAACATGTAGATATTA+GGG 0.270596 4:+102280 MsG0480018089.01.T01:three_prime_UTR
TTGACTACGTCAATCTCTTT+AGG 0.300346 4:+101817 MsG0480018089.01.T01:intron
CCACCTCTAAGAGGGATAAA+TGG 0.315166 4:-101962 None:intergenic
ATCAAATGAGACCATATAGA+TGG 0.342132 4:+101905 MsG0480018089.01.T01:intron
GATCCATTTATCCCTCTTAG+AGG 0.365887 4:+101959 MsG0480018089.01.T01:intron
TCTCCAGGCCAGGGATGTTC+AGG 0.370394 4:-101405 None:intergenic
AATCAGGTTGCCCACCTTGC+CGG 0.371618 4:+101331 MsG0480018089.01.T01:intron
TTTGACGGAACCTTACTTGT+AGG 0.375606 4:-101436 None:intergenic
AATTGCATATCCCATCTATA+TGG 0.377588 4:-101916 None:intergenic
TATATGTATCATCCCTTGGT+TGG 0.434058 4:-101883 None:intergenic
GTGCAGTCAATAATACTCTA+TGG 0.434974 4:+101856 MsG0480018089.01.T01:intron
AGATAGTTATTTGCTTTGTC+CGG 0.438211 4:-101350 None:intergenic
ATATGTATCATCCCTTGGTT+GGG 0.439786 4:-101882 None:intergenic
TTTCTTCCAGTTGTTGAAGT+AGG 0.443886 4:+101789 MsG0480018089.01.T01:intron
TTGATATATGTATCATCCCT+TGG 0.451636 4:-101887 None:intergenic
TTGTAGGAGGTATGTTCTCC+AGG 0.472948 4:-101420 None:intergenic
CAAATTGAATGGAAATAATA+CGG 0.473457 4:-102013 None:intergenic
GGAGGTATGTTCTCCAGGCC+AGG 0.475726 4:-101415 None:intergenic
AGTAGTATACACAAATTGAA+TGG 0.479637 4:-102024 None:intergenic
GACACCAGCTCTCTCTGTCT+TGG 0.482972 4:+101373 MsG0480018089.01.T01:CDS
ATACCTGAACATCCCTGGCC+TGG 0.496705 4:+101402 MsG0480018089.01.T01:intron
AAATCATAGTAATTACACTT+TGG 0.508911 4:+103264 MsG0480018089.01.T01:three_prime_UTR
GAACATACCTCCTACAAGTA+AGG 0.510643 4:+101426 MsG0480018089.01.T01:intron
TTTGCTTTGTCCGGCAAGGT+GGG 0.551268 4:-101341 None:intergenic
GTTATTTGCTTTGTCCGGCA+AGG 0.551751 4:-101345 None:intergenic
CCATTTATCCCTCTTAGAGG+TGG 0.555034 4:+101962 MsG0480018089.01.T01:intron
GAAGAATACCTGAACATCCC+TGG 0.556642 4:+101397 MsG0480018089.01.T01:intron
ATTTGCTTTGTCCGGCAAGG+TGG 0.556686 4:-101342 None:intergenic
GACGGAACCTTACTTGTAGG+AGG 0.563579 4:-101433 None:intergenic
TAAGAGGGATAAATGGATCA+TGG 0.570349 4:-101955 None:intergenic
TTCTCCAAGACAGAGAGAGC+TGG 0.571260 4:-101377 None:intergenic
TCAATCTCTTTAGGACTGAT+CGG 0.588852 4:+101826 MsG0480018089.01.T01:intron
TCAAATGAGACCATATAGAT+GGG 0.594756 4:+101906 MsG0480018089.01.T01:intron
ATAGACAGACCACCTCTAAG+AGG 0.595270 4:-101971 None:intergenic
TGCAATTGTCAAATATAATG+TGG 0.596737 4:+101932 MsG0480018089.01.T01:intron
GAGGTATGTTCTCCAGGCCA+GGG 0.602858 4:-101414 None:intergenic
CTCTATGGAGACCCAACCAA+GGG 0.622493 4:+101871 MsG0480018089.01.T01:intron
TAGACAGACCACCTCTAAGA+GGG 0.635483 4:-101970 None:intergenic
TTGTGTATACTACTGTCACT+TGG 0.644563 4:+102033 MsG0480018089.01.T01:intron
AAAGAACATGTAGATATTAG+GGG 0.648658 4:+102281 MsG0480018089.01.T01:three_prime_UTR
ACTCTATGGAGACCCAACCA+AGG 0.676467 4:+101870 MsG0480018089.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG - Chr4:100672-100691 None:intergenic 10.0%
!! ATATCATTTGAATATAATAA+GGG - Chr4:103231-103250 None:intergenic 10.0%
!! ATTTAATAAATTACATTAGA+AGG + Chr4:98366-98385 MsG0480018089.01.T01:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - Chr4:100673-100692 None:intergenic 10.0%
!! TGTTATATTATTATTATATG+GGG + Chr4:102327-102346 MsG0480018089.01.T01:intron 10.0%
!!! ATTATTTATCTTTATTGATT+TGG + Chr4:99466-99485 MsG0480018089.01.T01:intron 10.0%
!! AATTAGAGTTATATTGTATT+GGG - Chr4:100609-100628 None:intergenic 15.0%
!! ACAAATTTAAGTAAAAGATT+CGG - Chr4:98263-98282 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - Chr4:100671-100690 None:intergenic 15.0%
!! AGATTCATACAAAAAAATAA+TGG + Chr4:102708-102727 MsG0480018089.01.T01:intron 15.0%
!! ATCAATAAATAAATTGCATT+AGG + Chr4:101612-101631 MsG0480018089.01.T01:intron 15.0%
!! CATATCATTTGAATATAATA+AGG - Chr4:103232-103251 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG - Chr4:100610-100629 None:intergenic 15.0%
!! TATCATTTGAATATAATAAG+GGG - Chr4:103230-103249 None:intergenic 15.0%
!! TTAAGTATTCATTTAAATTG+TGG + Chr4:102086-102105 MsG0480018089.01.T01:intron 15.0%
!! TTTAAATACATTCACAAAAT+TGG - Chr4:100333-100352 None:intergenic 15.0%
!!! AAGATAAAAAAATGTGTTTT+AGG + Chr4:98526-98545 MsG0480018089.01.T01:intron 15.0%
!!! AGTTTTCAATTTAAAATACT+TGG + Chr4:99519-99538 MsG0480018089.01.T01:intron 15.0%
!!! ATGTCATTTGAAAATTAATT+AGG - Chr4:102427-102446 None:intergenic 15.0%
!!! GTGATTAATTTAAAACTAAA+GGG - Chr4:102396-102415 None:intergenic 15.0%
!!! TGATTAATTTAAAACTAAAG+GGG - Chr4:102395-102414 None:intergenic 15.0%
!!! TGTCATTTGAAAATTAATTA+GGG - Chr4:102426-102445 None:intergenic 15.0%
!!! TTTCAATTTTTCAAAATCAA+AGG - Chr4:101574-101593 None:intergenic 15.0%
!!! TTTTCTTATAATAAAATGCA+AGG + Chr4:99199-99218 MsG0480018089.01.T01:intron 15.0%
!!! TTTTTATCTTTTATACTATG+AGG - Chr4:98516-98535 None:intergenic 15.0%
!! AAAAAGAACATGTAGATATT+AGG + Chr4:102279-102298 MsG0480018089.01.T01:three_prime_UTR 20.0%
!! AAAAGAACATGTAGATATTA+GGG + Chr4:102280-102299 MsG0480018089.01.T01:three_prime_UTR 20.0%
!! AAAGTGGAATATATTGAATT+GGG - Chr4:100648-100667 None:intergenic 20.0%
!! AAATCATAGTAATTACACTT+TGG + Chr4:103264-103283 MsG0480018089.01.T01:three_prime_UTR 20.0%
!! AATTATTAATGGCTTAAGAT+TGG + Chr4:100268-100287 MsG0480018089.01.T01:intron 20.0%
!! ACTTGTAAGGAAAAATAAAA+GGG - Chr4:98624-98643 None:intergenic 20.0%
!! AGTGAATCTAATTTAAACTA+AGG + Chr4:103158-103177 MsG0480018089.01.T01:intron 20.0%
!! CAAATTGAATGGAAATAATA+CGG - Chr4:102016-102035 None:intergenic 20.0%
!! CCAATAATCAAAATTGTTTA+CGG - Chr4:100992-101011 None:intergenic 20.0%
!! GAAAGACATAACAATAAAAA+AGG + Chr4:102942-102961 MsG0480018089.01.T01:intron 20.0%
!! GTCATTTGAAAATTAATTAG+GGG - Chr4:102425-102444 None:intergenic 20.0%
!! GTGAATCTAATTTAAACTAA+GGG + Chr4:103159-103178 MsG0480018089.01.T01:intron 20.0%
!! TACTTGTAAGGAAAAATAAA+AGG - Chr4:98625-98644 None:intergenic 20.0%
!! TGAATCTAATTTAAACTAAG+GGG + Chr4:103160-103179 MsG0480018089.01.T01:intron 20.0%
!! TGCATTGGATTAATTATTAA+TGG + Chr4:100257-100276 MsG0480018089.01.T01:intron 20.0%
!! TTCTATAATTCTGTTACTAA+TGG - Chr4:98678-98697 None:intergenic 20.0%
!!! AATATCTACATGTTCTTTTT+TGG - Chr4:102279-102298 None:intergenic 20.0%
!!! AATTTGTAACTATGCTTTTA+TGG - Chr4:103002-103021 None:intergenic 20.0%
!!! AGGTATATTGATTGATATTT+TGG + Chr4:99650-99669 MsG0480018089.01.T01:intron 20.0%
!!! ATTTTGATTATTGGAATAAC+TGG + Chr4:100998-101017 MsG0480018089.01.T01:intron 20.0%
!!! ATTTTTCTGTATATATTCAC+AGG + Chr4:101501-101520 MsG0480018089.01.T01:intron 20.0%
!!! CGTGATTAATTTAAAACTAA+AGG - Chr4:102397-102416 None:intergenic 20.0%
!!! GACACTTTTTTTTAGTAAAT+GGG - Chr4:100541-100560 None:intergenic 20.0%
!!! TTAAATTTGTCTTCTGTTTT+TGG + Chr4:98273-98292 MsG0480018089.01.T01:intron 20.0%
!!! TTGAAATGTTAAGTTTCTTT+TGG - Chr4:101177-101196 None:intergenic 20.0%
!!! TTTCTTGTTTTTAGTTTCTT+CGG + Chr4:100933-100952 MsG0480018089.01.T01:intron 20.0%
! AAAGAACATGTAGATATTAG+GGG + Chr4:102281-102300 MsG0480018089.01.T01:three_prime_UTR 25.0%
! AAATACAATTTACTCTGACT+TGG - Chr4:97941-97960 None:intergenic 25.0%
! AAATAGTATTTAATCACCAC+TGG + Chr4:98393-98412 MsG0480018089.01.T01:intron 25.0%
! ACATGAAACTAAGACAAAAT+CGG - Chr4:99960-99979 None:intergenic 25.0%
! AGTAGTATACACAAATTGAA+TGG - Chr4:102027-102046 None:intergenic 25.0%
! AGTATTCATTTAAATTGTGG+TGG + Chr4:102089-102108 MsG0480018089.01.T01:intron 25.0%
! ATATAAAGAGAGGAATAAGT+CGG - Chr4:102564-102583 None:intergenic 25.0%
! ATCCAACTATATATAAAGAG+AGG - Chr4:102574-102593 None:intergenic 25.0%
! ATCTTTGTGAAAAATCAAAC+TGG + Chr4:100693-100712 MsG0480018089.01.T01:intron 25.0%
! ATTTGAAAATTAATTAGGGG+AGG - Chr4:102422-102441 None:intergenic 25.0%
! CATTCAAAAACATATTCTAC+CGG - Chr4:100237-100256 None:intergenic 25.0%
! CTAAATCTACTCAATATAGA+GGG + Chr4:100433-100452 MsG0480018089.01.T01:intron 25.0%
! CTATATTGAGTAGATTTAGA+GGG - Chr4:100432-100451 None:intergenic 25.0%
! CTCTTTATATATAGTTGGAT+CGG + Chr4:102574-102593 MsG0480018089.01.T01:intron 25.0%
! CTTGTAAGGAAAAATAAAAG+GGG - Chr4:98623-98642 None:intergenic 25.0%
! CTTGTACTACATTAACAATA+CGG + Chr4:98196-98215 MsG0480018089.01.T01:intron 25.0%
! GAAAGTGGAATATATTGAAT+TGG - Chr4:100649-100668 None:intergenic 25.0%
! GCCAAATGTCATAATTTATA+GGG + Chr4:101033-101052 MsG0480018089.01.T01:intron 25.0%
! GTAACAAAAGCAAGTAAATA+GGG - Chr4:98824-98843 None:intergenic 25.0%
! TAAAAGATTCGGAAACAATA+AGG - Chr4:98252-98271 None:intergenic 25.0%
! TAAATCTACTCAATATAGAG+GGG + Chr4:100434-100453 MsG0480018089.01.T01:intron 25.0%
! TAACAAAAGCAAGTAAATAG+GGG - Chr4:98823-98842 None:intergenic 25.0%
! TAACTGGCAATTGTTTATAT+TGG - Chr4:102887-102906 None:intergenic 25.0%
! TCCTAAGTAAAACAATTTGT+GGG - Chr4:98739-98758 None:intergenic 25.0%
! TCTAAATCTACTCAATATAG+AGG + Chr4:100432-100451 MsG0480018089.01.T01:intron 25.0%
! TCTATATTGAGTAGATTTAG+AGG - Chr4:100433-100452 None:intergenic 25.0%
! TGCAATTGTCAAATATAATG+TGG + Chr4:101932-101951 MsG0480018089.01.T01:intron 25.0%
! TGCCAAATGTCATAATTTAT+AGG + Chr4:101032-101051 MsG0480018089.01.T01:intron 25.0%
! TGTAACAAAAGCAAGTAAAT+AGG - Chr4:98825-98844 None:intergenic 25.0%
! TGTCACATCAAACTATAATA+AGG + Chr4:102856-102875 MsG0480018089.01.T01:intron 25.0%
! TGTTAATGTAGTACAAGAAA+GGG - Chr4:98193-98212 None:intergenic 25.0%
! TTAAATTGAAAACTATCAGC+AGG - Chr4:99513-99532 None:intergenic 25.0%
! TTAGAGAAACAAGCAAAATT+CGG - Chr4:101677-101696 None:intergenic 25.0%
! TTATTGACACTCTTTCATTT+AGG + Chr4:99630-99649 MsG0480018089.01.T01:intron 25.0%
! TTCCTCTCTTTATATATAGT+TGG + Chr4:102569-102588 MsG0480018089.01.T01:intron 25.0%
! TTGTAAGGAAAAATAAAAGG+GGG - Chr4:98622-98641 None:intergenic 25.0%
! TTGTTAATGTAGTACAAGAA+AGG - Chr4:98194-98213 None:intergenic 25.0%
!! AAGAATCATTCTCATTTTAG+TGG + Chr4:97997-98016 MsG0480018089.01.T01:CDS 25.0%
!! ATTGAAATGACTCAGTATTT+TGG - Chr4:100564-100583 None:intergenic 25.0%
!! TACAAAAGTAGGATTTTGTA+GGG + Chr4:97973-97992 MsG0480018089.01.T01:CDS 25.0%
!! TATGTATTAATTCTAGAAGC+TGG + Chr4:97903-97922 MsG0480018089.01.T01:CDS 25.0%
!! TCAATTTAAAATACTTGGTC+TGG + Chr4:99524-99543 MsG0480018089.01.T01:intron 25.0%
!! TTGAAATGACTCAGTATTTT+GGG - Chr4:100563-100582 None:intergenic 25.0%
!! TTGTTATTACAGGAAACAAA+GGG + Chr4:102756-102775 MsG0480018089.01.T01:intron 25.0%
!!! ATATGTTTTTGAATGTGCAT+TGG + Chr4:100242-100261 MsG0480018089.01.T01:intron 25.0%
!!! ATTTTAACTGTGCAGATTTT+AGG - Chr4:101530-101549 None:intergenic 25.0%
!!! CCGTAAACAATTTTGATTAT+TGG + Chr4:100989-101008 MsG0480018089.01.T01:intron 25.0%
!!! GCTTCTAGAATTAATACATA+AGG - Chr4:97903-97922 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG - Chr4:100542-100561 None:intergenic 25.0%
!!! GTTTTCCTTTTTGTTATGTT+TGG + Chr4:100100-100119 MsG0480018089.01.T01:intron 25.0%
!!! TGATATTTTTGTGTCTAATC+AGG + Chr4:101315-101334 MsG0480018089.01.T01:intron 25.0%
!!! TTGATATTTTGGAGAAAATC+AGG + Chr4:99661-99680 MsG0480018089.01.T01:intron 25.0%
!!! TTGTTTCTCTAAAATACCTT+TGG + Chr4:101685-101704 MsG0480018089.01.T01:intron 25.0%
!!! TTTCGTATGACTTTTTTCTT+TGG + Chr4:99421-99440 MsG0480018089.01.T01:intron 25.0%
AAAGCCAGTTATTGAACTAA+TGG - Chr4:98469-98488 None:intergenic 30.0%
AAATGTATGAAAACACCTAC+AGG - Chr4:99031-99050 None:intergenic 30.0%
AACAAAAGCAAGTAAATAGG+GGG - Chr4:98822-98841 None:intergenic 30.0%
AATACGCGTTAAACAAAAGA+GGG - Chr4:102455-102474 None:intergenic 30.0%
AATTGCATATCCCATCTATA+TGG - Chr4:101919-101938 None:intergenic 30.0%
AGATAGTTATTTGCTTTGTC+CGG - Chr4:101353-101372 None:intergenic 30.0%
AGTGACCAAACATAACAAAA+AGG - Chr4:100108-100127 None:intergenic 30.0%
ATATGCTTGTCTAATGTTCA+TGG + Chr4:99088-99107 MsG0480018089.01.T01:intron 30.0%
ATCAAATGAGACCATATAGA+TGG + Chr4:101905-101924 MsG0480018089.01.T01:intron 30.0%
ATGTAACATAACAGCATCAA+AGG - Chr4:99378-99397 None:intergenic 30.0%
ATTCGGAAACAATAAGGTAT+TGG - Chr4:98246-98265 None:intergenic 30.0%
CAATAGAATATACATCTTCC+AGG - Chr4:99860-99879 None:intergenic 30.0%
CCTAAGTAAAACAATTTGTG+GGG - Chr4:98738-98757 None:intergenic 30.0%
CTAAGTAAAACAATTTGTGG+GGG - Chr4:98737-98756 None:intergenic 30.0%
GAAAAGAAGAATGCATAACT+AGG + Chr4:99832-99851 MsG0480018089.01.T01:intron 30.0%
GAGTTGTAGTTTATAAGACA+TGG - Chr4:99338-99357 None:intergenic 30.0%
GCAAGAATTAGTACAAAAGT+AGG + Chr4:97962-97981 MsG0480018089.01.T01:CDS 30.0%
GCCCTATAAATTATGACATT+TGG - Chr4:101037-101056 None:intergenic 30.0%
GTCCTAAGTAAAACAATTTG+TGG - Chr4:98740-98759 None:intergenic 30.0%
GTGTCAATAAGTGATTATTG+CGG - Chr4:99620-99639 None:intergenic 30.0%
TAAAAGTTGTTACTAGACAG+AGG - Chr4:98578-98597 None:intergenic 30.0%
TAATATTTGATCAAGGAGAC+AGG + Chr4:100832-100851 MsG0480018089.01.T01:intron 30.0%
TAGAAGTAGAAGCAATTTGA+CGG - Chr4:101454-101473 None:intergenic 30.0%
TCAAATGAGACCATATAGAT+GGG + Chr4:101906-101925 MsG0480018089.01.T01:intron 30.0%
TCACATGCAAAACTTACATT+AGG - Chr4:99913-99932 None:intergenic 30.0%
TGAATGCAGATTAGATCAAA+AGG - Chr4:101288-101307 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - Chr4:100664-100683 None:intergenic 30.0%
TTAACATTTCAACCTTGTCT+AGG + Chr4:101185-101204 MsG0480018089.01.T01:intron 30.0%
TTAGAAACCAAGCAATAGTT+AGG + Chr4:98778-98797 MsG0480018089.01.T01:intron 30.0%
TTGATATATGTATCATCCCT+TGG - Chr4:101890-101909 None:intergenic 30.0%
TTTCTATCTTCTTGAAGATG+TGG + Chr4:99294-99313 MsG0480018089.01.T01:intron 30.0%
TTTGATCTAATCTGCATTCA+GGG + Chr4:101288-101307 MsG0480018089.01.T01:intron 30.0%
TTTGTCTTAGTTTCATGTTC+TGG + Chr4:99962-99981 MsG0480018089.01.T01:CDS 30.0%
! AGTATTTGGTTTAGGGTATA+TGG - Chr4:100496-100515 None:intergenic 30.0%
! GTACAAAAGTAGGATTTTGT+AGG + Chr4:97972-97991 MsG0480018089.01.T01:CDS 30.0%
! TATATTCACTCTTGTTTCAG+AGG + Chr4:98931-98950 MsG0480018089.01.T01:intron 30.0%
! TCTGAAACAAGAGTGAATAT+AGG - Chr4:98932-98951 None:intergenic 30.0%
! TTTTGATCTAATCTGCATTC+AGG + Chr4:101287-101306 MsG0480018089.01.T01:intron 30.0%
!! ATATTTTGGAGAAAATCAGG+AGG + Chr4:99664-99683 MsG0480018089.01.T01:intron 30.0%
!! CTTGTTATTACAGGAAACAA+AGG + Chr4:102755-102774 MsG0480018089.01.T01:intron 30.0%
!! TATTTTGGAGAAAATCAGGA+GGG + Chr4:99665-99684 MsG0480018089.01.T01:intron 30.0%
!! TGGTTTCTTCTTGTTATTAC+AGG + Chr4:102746-102765 MsG0480018089.01.T01:intron 30.0%
!! TTCTGTTACTAATGGACTAA+TGG - Chr4:98670-98689 None:intergenic 30.0%
!! TTGAACATTGACTCATTTAC+AGG + Chr4:102125-102144 MsG0480018089.01.T01:intron 30.0%
!!! AATGTGTTTTAGGACATTCA+AGG + Chr4:98536-98555 MsG0480018089.01.T01:intron 30.0%
AAAAGAAACTGTACCTGCAA+TGG - Chr4:100206-100225 None:intergenic 35.0%
AAAATGCAAGGATACCAACA+AGG + Chr4:99211-99230 MsG0480018089.01.T01:intron 35.0%
AAAATGTCAGAGCGATGATA+AGG + Chr4:99158-99177 MsG0480018089.01.T01:intron 35.0%
AAGAAATATTAGAGAGCCTC+AGG - Chr4:102515-102534 None:intergenic 35.0%
AAGATTCCTTGAGAAGATCT+GGG + Chr4:100153-100172 MsG0480018089.01.T01:CDS 35.0%
AAGGAAAAATAAAAGGGGGA+AGG - Chr4:98618-98637 None:intergenic 35.0%
AATGGCACACTATTGTAAGT+TGG + Chr4:102726-102745 MsG0480018089.01.T01:intron 35.0%
ACAAAAGCAAGTAAATAGGG+GGG - Chr4:98821-98840 None:intergenic 35.0%
ACGTGTATGATAGCAAATGT+TGG - Chr4:100914-100933 None:intergenic 35.0%
AGAAATGTTCCCTTGCAATT+CGG - Chr4:103087-103106 None:intergenic 35.0%
AGATTTAGAGGGAAAGAAGA+TGG - Chr4:100421-100440 None:intergenic 35.0%
AGGAAAAATAAAAGGGGGAA+GGG - Chr4:98617-98636 None:intergenic 35.0%
AGTAAATGGGTCAGATATTC+CGG - Chr4:100528-100547 None:intergenic 35.0%
ATATGTATCATCCCTTGGTT+GGG - Chr4:101885-101904 None:intergenic 35.0%
ATCTGTCATGATAGGTATGA+GGG + Chr4:97847-97866 MsG0480018089.01.T01:CDS 35.0%
ATGAGTTCATCTGTCATGAT+AGG + Chr4:97839-97858 MsG0480018089.01.T01:CDS 35.0%
ATGTTGGCATATCTTTGTCA+TGG + Chr4:102187-102206 MsG0480018089.01.T01:intron 35.0%
ATGTTTCCTACTTCAACAAC+TGG - Chr4:101798-101817 None:intergenic 35.0%
ATTCATAGAACCGAATTGCA+AGG + Chr4:103074-103093 MsG0480018089.01.T01:intron 35.0%
CAATACGCGTTAAACAAAAG+AGG - Chr4:102456-102475 None:intergenic 35.0%
CGCATTTGTGACAAAATAAC+TGG - Chr4:102903-102922 None:intergenic 35.0%
CGTGTATGATAGCAAATGTT+GGG - Chr4:100913-100932 None:intergenic 35.0%
CTGATGTTACCTATTTCCAA+AGG - Chr4:102676-102695 None:intergenic 35.0%
CTTATTGCCTAACTATTGCT+TGG - Chr4:98788-98807 None:intergenic 35.0%
CTTTCCGAACCTTTGTAATA+GGG + Chr4:98490-98509 MsG0480018089.01.T01:intron 35.0%
GACAAGTCCATAACACAATA+GGG - Chr4:102654-102673 None:intergenic 35.0%
GACTCTAAGTGATACTTGTA+AGG - Chr4:98637-98656 None:intergenic 35.0%
GATTTAGAGGGAAAGAAGAT+GGG - Chr4:100420-100439 None:intergenic 35.0%
GCATAGTTACAAATTGAGAG+AGG + Chr4:103007-103026 MsG0480018089.01.T01:intron 35.0%
GTACAAGAAAGGGTCTAAAA+CGG - Chr4:98183-98202 None:intergenic 35.0%
GTGCAGTCAATAATACTCTA+TGG + Chr4:101856-101875 MsG0480018089.01.T01:intron 35.0%
GTGTATGATAGCAAATGTTG+GGG - Chr4:100912-100931 None:intergenic 35.0%
GTTTGATGTGACAACAATTG+TGG - Chr4:102849-102868 None:intergenic 35.0%
TAAGAGGGATAAATGGATCA+TGG - Chr4:101958-101977 None:intergenic 35.0%
TATATAAAAGCCTTGCCTGT+AGG + Chr4:99013-99032 MsG0480018089.01.T01:intron 35.0%
TATATGTATCATCCCTTGGT+TGG - Chr4:101886-101905 None:intergenic 35.0%
TCAGATTACTAGAATCAAGC+AGG - Chr4:99808-99827 None:intergenic 35.0%
TCTATTCTTTACTGTCACTG+AGG + Chr4:100874-100893 MsG0480018089.01.T01:intron 35.0%
TGGATTTAGAGGAAAGAAGA+TGG - Chr4:100393-100412 None:intergenic 35.0%
TGGATTTAGGGAAAGAAGAT+GGG - Chr4:100366-100385 None:intergenic 35.0%
TGTATGATAGCAAATGTTGG+GGG - Chr4:100911-100930 None:intergenic 35.0%
TTCATAGAACCGAATTGCAA+GGG + Chr4:103075-103094 MsG0480018089.01.T01:intron 35.0%
TTCTACATAGCTGCATCAAA+TGG + Chr4:101469-101488 MsG0480018089.01.T01:intron 35.0%
TTGGAAATAGGTAACATCAG+AGG + Chr4:102676-102695 MsG0480018089.01.T01:intron 35.0%
TTGGTCAAACAAACTTCAGA+AGG - Chr4:103122-103141 None:intergenic 35.0%
TTGTGTATACTACTGTCACT+TGG + Chr4:102033-102052 MsG0480018089.01.T01:intron 35.0%
TTGTTCTTGCAGTTGAATCA+TGG - Chr4:101101-101120 None:intergenic 35.0%
TTTCTTCCAGTTGTTGAAGT+AGG + Chr4:101789-101808 MsG0480018089.01.T01:intron 35.0%
TTTGATGTGAGTAAACTGCT+TGG + Chr4:101125-101144 MsG0480018089.01.T01:intron 35.0%
! AATTTTGCAGCATCCCAATT+GGG + Chr4:102625-102644 MsG0480018089.01.T01:intron 35.0%
! ATTTGGTTTAGGGTATATGG+AGG - Chr4:100493-100512 None:intergenic 35.0%
! CTCATTTACAGGTCTTTTCA+AGG + Chr4:102136-102155 MsG0480018089.01.T01:intron 35.0%
! TCTGAAGTTTGTTTGACCAA+CGG + Chr4:103122-103141 MsG0480018089.01.T01:intron 35.0%
! TGGACAAGCTTTAGTAAAAC+TGG + Chr4:99590-99609 MsG0480018089.01.T01:intron 35.0%
! TTTGGTTTAGGGTATATGGA+GGG - Chr4:100492-100511 None:intergenic 35.0%
!! CCCCACAAATTGTTTTACTT+AGG + Chr4:98735-98754 MsG0480018089.01.T01:intron 35.0%
!! TTCTCATTTTAGTGGCTCTA+TGG + Chr4:98005-98024 MsG0480018089.01.T01:CDS 35.0%
AAAAAACGGAAGCTAGGACA+TGG + Chr4:103046-103065 MsG0480018089.01.T01:intron 40.0%
AACAAATGAACCTACCCTCT+TGG - Chr4:100029-100048 None:intergenic 40.0%
AAGTCTGCGCAGAAAAAAGA+GGG - Chr4:98859-98878 None:intergenic 40.0%
ACACAATAGGGAAACCCAAT+TGG - Chr4:102642-102661 None:intergenic 40.0%
ACCGGACGAAATGATGAAAA+TGG - Chr4:98147-98166 None:intergenic 40.0%
ACTATGAGGCCCTATTACAA+AGG - Chr4:98502-98521 None:intergenic 40.0%
ACTCGTAACATACCTAGACA+AGG - Chr4:101200-101219 None:intergenic 40.0%
AGCAAGTTCTTAAAGCCAAG+AGG + Chr4:100011-100030 MsG0480018089.01.T01:CDS 40.0%
AGTAAATGCGTCAAAGAACC+AGG + Chr4:98962-98981 MsG0480018089.01.T01:intron 40.0%
ATCAAGGAGACAGGATATCT+CGG + Chr4:100841-100860 MsG0480018089.01.T01:intron 40.0%
ATTCGCGGAATACTCAAACT+TGG - Chr4:102791-102810 None:intergenic 40.0%
ATTTGTGGGGGAAGAATAGA+CGG - Chr4:98725-98744 None:intergenic 40.0%
CAAAGATATGCCAACATGCA+AGG - Chr4:102184-102203 None:intergenic 40.0%
CACAATAGGGAAACCCAATT+GGG - Chr4:102641-102660 None:intergenic 40.0%
CATCTGTCATGATAGGTATG+AGG + Chr4:97846-97865 MsG0480018089.01.T01:CDS 40.0%
CCTATCTGTATTACCATGAC+AGG + Chr4:98113-98132 MsG0480018089.01.T01:intron 40.0%
CCTGTCATGGTAATACAGAT+AGG - Chr4:98116-98135 None:intergenic 40.0%
CGAGAAGCTTCAGCTAATAT+TGG + Chr4:98988-99007 MsG0480018089.01.T01:intron 40.0%
CTATTGCTTGGTTTCTAAGC+AGG - Chr4:98776-98795 None:intergenic 40.0%
GAAAGTTGCAGCTCACAAAT+GGG + Chr4:102964-102983 MsG0480018089.01.T01:intron 40.0%
GAACATACCTCCTACAAGTA+AGG + Chr4:101426-101445 MsG0480018089.01.T01:intron 40.0%
GAAGATTCCTTGAGAAGATC+TGG + Chr4:100152-100171 MsG0480018089.01.T01:CDS 40.0%
GAGTATTCCGCGAATTAAGT+GGG + Chr4:102796-102815 MsG0480018089.01.T01:intron 40.0%
GAGTGCCTTCACACATATAT+CGG - Chr4:101079-101098 None:intergenic 40.0%
GATCCATTTATCCCTCTTAG+AGG + Chr4:101959-101978 MsG0480018089.01.T01:intron 40.0%
GATGTGACAACAATTGTGGT+AGG - Chr4:102845-102864 None:intergenic 40.0%
GCAAGTTCTTAAAGCCAAGA+GGG + Chr4:100012-100031 MsG0480018089.01.T01:CDS 40.0%
GCTTTCCGAACCTTTGTAAT+AGG + Chr4:98489-98508 MsG0480018089.01.T01:intron 40.0%
GGAAAAATAAAAGGGGGAAG+GGG - Chr4:98616-98635 None:intergenic 40.0%
GGACAAGTCCATAACACAAT+AGG - Chr4:102655-102674 None:intergenic 40.0%
GGCTCCATTAGTTCAATAAC+TGG + Chr4:98462-98481 MsG0480018089.01.T01:intron 40.0%
GGTAACATCAGAGGAAACAA+CGG + Chr4:102685-102704 MsG0480018089.01.T01:intron 40.0%
GTAAATGGGTCAGATATTCC+GGG - Chr4:100527-100546 None:intergenic 40.0%
GTGACTTCAATGAAACTCGA+GGG - Chr4:102367-102386 None:intergenic 40.0%
GTGGATTTAGGGAAAGAAGA+TGG - Chr4:100367-100386 None:intergenic 40.0%
TAGCAAATGTTGGGGGAAAT+AGG - Chr4:100904-100923 None:intergenic 40.0%
TATGAAAACACCTACAGGCA+AGG - Chr4:99026-99045 None:intergenic 40.0%
TCAGAGACAAGACAAATGCA+AGG - Chr4:98300-98319 None:intergenic 40.0%
TGAGTATTCCGCGAATTAAG+TGG + Chr4:102795-102814 MsG0480018089.01.T01:intron 40.0%
TGCCATTCAATGAAACCTCA+GGG + Chr4:103189-103208 MsG0480018089.01.T01:intron 40.0%
TGGATACACAATAGTTCGTC+CGG + Chr4:100178-100197 MsG0480018089.01.T01:CDS 40.0%
TGGGTTTCCCTATTGTGTTA+TGG + Chr4:102644-102663 MsG0480018089.01.T01:intron 40.0%
TGTGACTTCAATGAAACTCG+AGG - Chr4:102368-102387 None:intergenic 40.0%
TGTGTTATGGACTTGTCCTT+TGG + Chr4:102657-102676 MsG0480018089.01.T01:intron 40.0%
TTAGTTTCATGTTCTGGCCT+TGG + Chr4:99968-99987 MsG0480018089.01.T01:CDS 40.0%
TTGCTGCCTTGGTGAAAAAA+CGG + Chr4:103032-103051 MsG0480018089.01.T01:intron 40.0%
TTGGACATTACCTGTCTTCT+AGG - Chr4:98227-98246 None:intergenic 40.0%
TTGGTGAAAAAACGGAAGCT+AGG + Chr4:103040-103059 MsG0480018089.01.T01:intron 40.0%
TTGTCCAAGTTGTCAGCAAT+TGG - Chr4:99577-99596 None:intergenic 40.0%
TTGTCCAATTGCTGACAACT+TGG + Chr4:99570-99589 MsG0480018089.01.T01:intron 40.0%
TTGTTGTCCGTTAAAGTGCA+TGG + Chr4:102473-102492 MsG0480018089.01.T01:intron 40.0%
TTTGACGGAACCTTACTTGT+AGG - Chr4:101439-101458 None:intergenic 40.0%
! AGAAGATGGTGAGTGGATTT+AGG - Chr4:100379-100398 None:intergenic 40.0%
! CAGTTTCTTTTGTAGTGTGC+CGG + Chr4:100215-100234 MsG0480018089.01.T01:intron 40.0%
! GAAGATGGTGAGTGGATTTA+GGG - Chr4:100378-100397 None:intergenic 40.0%
! GAATTTTGCAGCATCCCAAT+TGG + Chr4:102624-102643 MsG0480018089.01.T01:intron 40.0%
! GCGGCTCTAATATTTGATCA+AGG + Chr4:100825-100844 MsG0480018089.01.T01:intron 40.0%
! TCAAACTGGCTCAGATATAC+CGG + Chr4:100707-100726 MsG0480018089.01.T01:intron 40.0%
! TGACCAACGGTGTTAACAAA+GGG + Chr4:103135-103154 MsG0480018089.01.T01:intron 40.0%
! TGGACTTGTCCTTTGGAAAT+AGG + Chr4:102664-102683 MsG0480018089.01.T01:intron 40.0%
! TTGACCAACGGTGTTAACAA+AGG + Chr4:103134-103153 MsG0480018089.01.T01:intron 40.0%
! TTGGTTTAGGGTATATGGAG+GGG - Chr4:100491-100510 None:intergenic 40.0%
!! GCCATTTTCATCATTTCGTC+CGG + Chr4:98143-98162 MsG0480018089.01.T01:intron 40.0%
!!! TAGCTTCCGTTTTTTCACCA+AGG - Chr4:103041-103060 None:intergenic 40.0%
AATGGCACTCTAACCTGTCA+TGG - Chr4:98129-98148 None:intergenic 45.0%
ACATGGGCCATGCACTTTAA+CGG - Chr4:102483-102502 None:intergenic 45.0%
ACGCGTTAAACAAAAGAGGG+AGG - Chr4:102452-102471 None:intergenic 45.0%
ACTCCCTTTGTTAACACCGT+TGG - Chr4:103141-103160 None:intergenic 45.0%
ACTTCAATGAAACTCGAGGG+AGG - Chr4:102364-102383 None:intergenic 45.0%
AGAATGCATAACTAGGCACC+TGG + Chr4:99839-99858 MsG0480018089.01.T01:intron 45.0%
AGAGGAAAGAAGATGGTGAG+TGG - Chr4:100386-100405 None:intergenic 45.0%
AGATATGCCAACATGCAAGG+TGG - Chr4:102181-102200 None:intergenic 45.0%
AGTCTGCGCAGAAAAAAGAG+GGG - Chr4:98858-98877 None:intergenic 45.0%
ATAGACAGACCACCTCTAAG+AGG - Chr4:101974-101993 None:intergenic 45.0%
ATGTTACGAGTACGTTGCTG+AGG + Chr4:101209-101228 MsG0480018089.01.T01:CDS 45.0%
CAAGTCTGCGCAGAAAAAAG+AGG - Chr4:98860-98879 None:intergenic 45.0%
CACTTAATCCCGAATTCTCC+AGG + Chr4:100124-100143 MsG0480018089.01.T01:intron 45.0%
CATTCAATGAAACCTCAGGG+AGG + Chr4:103192-103211 MsG0480018089.01.T01:intron 45.0%
CCATTTATCCCTCTTAGAGG+TGG + Chr4:101962-101981 MsG0480018089.01.T01:intron 45.0%
CTAAGCAGGAGCAGTTAGAA+TGG - Chr4:98762-98781 None:intergenic 45.0%
CTCCCTGAGGTTTCATTGAA+TGG - Chr4:103194-103213 None:intergenic 45.0%
CTCGAGGTTCAAAGTTCAAC+CGG - Chr4:98437-98456 None:intergenic 45.0%
GAAGAATACCTGAACATCCC+TGG + Chr4:101397-101416 MsG0480018089.01.T01:intron 45.0%
GAGGCCCTATTACAAAGGTT+CGG - Chr4:98497-98516 None:intergenic 45.0%
GGAAAGTTGCAGCTCACAAA+TGG + Chr4:102963-102982 MsG0480018089.01.T01:intron 45.0%
GGATACACAATAGTTCGTCC+GGG + Chr4:100179-100198 MsG0480018089.01.T01:CDS 45.0%
GTAAGATCGCAGTTGAACTC+CGG + Chr4:98415-98434 MsG0480018089.01.T01:intron 45.0%
GTTATTTGCTTTGTCCGGCA+AGG - Chr4:101348-101367 None:intergenic 45.0%
GTTCTTAAAGCCAAGAGGGT+AGG + Chr4:100016-100035 MsG0480018089.01.T01:intron 45.0%
TATCACTTAGAGTCCTCCAG+TGG + Chr4:98643-98662 MsG0480018089.01.T01:intron 45.0%
TATTCCGCGAATTAAGTGGG+TGG + Chr4:102799-102818 MsG0480018089.01.T01:intron 45.0%
TCAACCACCCACTTAATTCG+CGG - Chr4:102806-102825 None:intergenic 45.0%
TCAAGGAGACAGGATATCTC+GGG + Chr4:100842-100861 MsG0480018089.01.T01:intron 45.0%
TCATGATAGGTATGAGGGCT+TGG + Chr4:97852-97871 MsG0480018089.01.T01:CDS 45.0%
TGTGGCCGATATATGTGTGA+AGG + Chr4:101071-101090 MsG0480018089.01.T01:CDS 45.0%
TGTTACTAGACAGAGGAGCA+AGG - Chr4:98571-98590 None:intergenic 45.0%
TTCAACTGCGATCTTACCAG+TGG - Chr4:98412-98431 None:intergenic 45.0%
TTTGTGGGGGAAGAATAGAC+GGG - Chr4:98724-98743 None:intergenic 45.0%
! AACGGATGATCTGGTTTCAC+CGG - Chr4:98165-98184 None:intergenic 45.0%
! ACCAACAAGGCACTATAGTG+TGG + Chr4:99224-99243 MsG0480018089.01.T01:intron 45.0%
! AGATGGGTGAGTGGATTTAG+AGG - Chr4:100404-100423 None:intergenic 45.0%
! AGGGTCTAAAACGGATGATC+TGG - Chr4:98174-98193 None:intergenic 45.0%
! ATTCTAGAAGCTGGTCCTTC+AGG + Chr4:97912-97931 MsG0480018089.01.T01:CDS 45.0%
! CCAACAAGGCACTATAGTGT+GGG + Chr4:99225-99244 MsG0480018089.01.T01:intron 45.0%
! CCACCTCTAAGAGGGATAAA+TGG - Chr4:101965-101984 None:intergenic 45.0%
! GAAGAATAGACGGGGTTAGT+AGG - Chr4:98715-98734 None:intergenic 45.0%
! GACTTGCATGTTTTGCTGAC+AGG + Chr4:100786-100805 MsG0480018089.01.T01:intron 45.0%
! GTGCCATTCAATGAAACCTC+AGG + Chr4:103188-103207 MsG0480018089.01.T01:intron 45.0%
! TAGACAGACCACCTCTAAGA+GGG - Chr4:101973-101992 None:intergenic 45.0%
! TGGGAATGAGCTTTATGAGC+TGG + Chr4:101233-101252 MsG0480018089.01.T01:CDS 45.0%
! TTCTAGAAGCTGGTCCTTCA+GGG + Chr4:97913-97932 MsG0480018089.01.T01:CDS 45.0%
! TTGTAGGAGGTATGTTCTCC+AGG - Chr4:101423-101442 None:intergenic 45.0%
! TTTAGGGTATATGGAGGGGA+AGG - Chr4:100487-100506 None:intergenic 45.0%
! TTTTGCTGACAGGAAGAACC+TGG + Chr4:100796-100815 MsG0480018089.01.T01:intron 45.0%
!! ACGGAGGGAGTATTTGGTTT+AGG - Chr4:100504-100523 None:intergenic 45.0%
!! ATACCTTTGGAGTTGCATGC+CGG + Chr4:101698-101717 MsG0480018089.01.T01:intron 45.0%
!! CGGAGGGAGTATTTGGTTTA+GGG - Chr4:100503-100522 None:intergenic 45.0%
!! CTAATGGACTAATGGTCCAC+TGG - Chr4:98662-98681 None:intergenic 45.0%
!! TTGTTATATTATTATTATAT+GGG + Chr4:102326-102345 MsG0480018089.01.T01:intron 5.0%
!!! TTTGTTATATTATTATTATA+TGG + Chr4:102325-102344 MsG0480018089.01.T01:intron 5.0%
AAATTGCACTCACCTCCCTG+AGG - Chr4:103207-103226 None:intergenic 50.0%
AACATAGTACTCCCTCCGTC+CGG - Chr4:100729-100748 None:intergenic 50.0%
AACTGTACCTGCAATGGACC+CGG - Chr4:100200-100219 None:intergenic 50.0%
AACTTTGAACCTCGAGGCAG+TGG + Chr4:98441-98460 MsG0480018089.01.T01:intron 50.0%
ACGAGTACGTTGCTGAGGAT+GGG + Chr4:101214-101233 MsG0480018089.01.T01:CDS 50.0%
ACTCTATGGAGACCCAACCA+AGG + Chr4:101870-101889 MsG0480018089.01.T01:intron 50.0%
AGACAGAGGAGCAAGGAATC+AGG - Chr4:98564-98583 None:intergenic 50.0%
AGCTGAAGCTTCTCGAATCC+TGG - Chr4:98983-99002 None:intergenic 50.0%
AGGGAAAGAAGATGGGTGAG+TGG - Chr4:100413-100432 None:intergenic 50.0%
ATCACTCTTCTTGAGCCGGA+AGG + Chr4:101722-101741 MsG0480018089.01.T01:intron 50.0%
ATGGGTCAGATATTCCGGGA+CGG - Chr4:100523-100542 None:intergenic 50.0%
ATTCCGGCATGCAACTCCAA+AGG - Chr4:101704-101723 None:intergenic 50.0%
ATTTGCTTTGTCCGGCAAGG+TGG - Chr4:101345-101364 None:intergenic 50.0%
CAAGGATGTGTCAAGTGCCT+CGG + Chr4:102154-102173 MsG0480018089.01.T01:intron 50.0%
CATGTGAATATGCCGCAGAC+TGG + Chr4:99926-99945 MsG0480018089.01.T01:CDS 50.0%
CCCACACTATAGTGCCTTGT+TGG - Chr4:99228-99247 None:intergenic 50.0%
CGGAATCACTCTTCTTGAGC+CGG + Chr4:101718-101737 MsG0480018089.01.T01:intron 50.0%
CGGCTCAAGAAGAGTGATTC+CGG - Chr4:101720-101739 None:intergenic 50.0%
CGGTTGAACTTTGAACCTCG+AGG + Chr4:98435-98454 MsG0480018089.01.T01:intron 50.0%
CTCTATGGAGACCCAACCAA+GGG + Chr4:101871-101890 MsG0480018089.01.T01:intron 50.0%
CTTCACCTGCCTGGAGAATT+CGG - Chr4:100136-100155 None:intergenic 50.0%
CTTCTTGAGCCGGAAGGATA+GGG + Chr4:101728-101747 MsG0480018089.01.T01:intron 50.0%
GACAGAGGAGCAAGGAATCA+GGG - Chr4:98563-98582 None:intergenic 50.0%
GACGGAACCTTACTTGTAGG+AGG - Chr4:101436-101455 None:intergenic 50.0%
GTCTGCGCAGAAAAAAGAGG+GGG - Chr4:98857-98876 None:intergenic 50.0%
TAATCCCGAATTCTCCAGGC+AGG + Chr4:100128-100147 MsG0480018089.01.T01:intron 50.0%
TACGAGTACGTTGCTGAGGA+TGG + Chr4:101213-101232 MsG0480018089.01.T01:CDS 50.0%
TACGGTTGAGCCTAGAAGAC+AGG + Chr4:98214-98233 MsG0480018089.01.T01:intron 50.0%
TCAAGGAATCTTCACCTGCC+TGG - Chr4:100145-100164 None:intergenic 50.0%
TCCAAGCCCAGATCTTCTCA+AGG - Chr4:100162-100181 None:intergenic 50.0%
TCCTTGAGAAGATCTGGGCT+TGG + Chr4:100158-100177 MsG0480018089.01.T01:CDS 50.0%
TCGGTTTCTTGTCCAGTCTG+CGG - Chr4:99941-99960 None:intergenic 50.0%
TCTACCATCCCCTATCCTTC+CGG - Chr4:101740-101759 None:intergenic 50.0%
TCTGCGCAGAAAAAAGAGGG+GGG - Chr4:98856-98875 None:intergenic 50.0%
TCTTCTTGAGCCGGAAGGAT+AGG + Chr4:101727-101746 MsG0480018089.01.T01:intron 50.0%
TTCACCTGCCTGGAGAATTC+GGG - Chr4:100135-100154 None:intergenic 50.0%
TTCTCCAAGACAGAGAGAGC+TGG - Chr4:101380-101399 None:intergenic 50.0%
TTCTTGAGCCGGAAGGATAG+GGG + Chr4:101729-101748 MsG0480018089.01.T01:intron 50.0%
TTGTGGGGGAAGAATAGACG+GGG - Chr4:98723-98742 None:intergenic 50.0%
TTTGCTTTGTCCGGCAAGGT+GGG - Chr4:101344-101363 None:intergenic 50.0%
! ACTGGCTCAGATATACCGGA+CGG + Chr4:100711-100730 MsG0480018089.01.T01:intron 50.0%
! ATGGACTAATGGTCCACTGG+AGG - Chr4:98659-98678 None:intergenic 50.0%
! TGAGAGAGGTTTTGCTGCCT+TGG + Chr4:103021-103040 MsG0480018089.01.T01:intron 50.0%
! TTGGTATTGAGCCTTCCAGG+CGG + Chr4:99987-100006 MsG0480018089.01.T01:CDS 50.0%
! TTTAAGAACTTGCTCCCGCC+TGG - Chr4:100005-100024 None:intergenic 50.0%
!! ACTCTGACTTGGATCCCTGA+AGG - Chr4:97930-97949 None:intergenic 50.0%
!! AGGGGGAAGGGGTATTATGT+AGG - Chr4:98605-98624 None:intergenic 50.0%
ACCAAATACTCCCTCCGTCC+CGG + Chr4:100506-100525 MsG0480018089.01.T01:intron 55.0%
ATACCTGAACATCCCTGGCC+TGG + Chr4:101402-101421 MsG0480018089.01.T01:intron 55.0%
CTGCGCAGAAAAAAGAGGGG+GGG - Chr4:98855-98874 None:intergenic 55.0%
GACACCAGCTCTCTCTGTCT+TGG + Chr4:101373-101392 MsG0480018089.01.T01:CDS 55.0%
GAGGTATGTTCTCCAGGCCA+GGG - Chr4:101417-101436 None:intergenic 55.0%
GCCTGGAAGGCTCAATACCA+AGG - Chr4:99988-100007 None:intergenic 55.0%
GCTCAGATATACCGGACGGA+GGG + Chr4:100715-100734 MsG0480018089.01.T01:intron 55.0%
GCTGACAGGAAGAACCTGGT+GGG + Chr4:100800-100819 MsG0480018089.01.T01:intron 55.0%
GGGTATATGGAGGGGAAGGA+AGG - Chr4:100483-100502 None:intergenic 55.0%
GGTTCTCTCTGTTGGCGCAA+TGG + Chr4:97873-97892 MsG0480018089.01.T01:CDS 55.0%
GTCAGATATTCCGGGACGGA+GGG - Chr4:100519-100538 None:intergenic 55.0%
TGCTGACAGGAAGAACCTGG+TGG + Chr4:100799-100818 MsG0480018089.01.T01:intron 55.0%
TTAGAGAGCCTCAGGCGAGT+TGG - Chr4:102507-102526 None:intergenic 55.0%
! AATCAGGTTGCCCACCTTGC+CGG + Chr4:101331-101350 MsG0480018089.01.T01:intron 55.0%
! CCTCAGGCGAGTTGGAACAT+GGG - Chr4:102499-102518 None:intergenic 55.0%
! GAGGGCTTGGTTCTCTCTGT+TGG + Chr4:97865-97884 MsG0480018089.01.T01:CDS 55.0%
! GCCTTGGTATTGAGCCTTCC+AGG + Chr4:99984-100003 MsG0480018089.01.T01:CDS 55.0%
! GGGCATCAGTTGTGCTGATG+TGG + Chr4:101053-101072 MsG0480018089.01.T01:intron 55.0%
! TGGTATTGAGCCTTCCAGGC+GGG + Chr4:99988-100007 MsG0480018089.01.T01:CDS 55.0%
AGTTCGTCCGGGTCCATTGC+AGG + Chr4:100190-100209 MsG0480018089.01.T01:CDS 60.0%
CCAACATGCAAGGTGGTCCG+AGG - Chr4:102174-102193 None:intergenic 60.0%
CCCATGTTCCAACTCGCCTG+AGG + Chr4:102496-102515 MsG0480018089.01.T01:intron 60.0%
CCTCGGACCACCTTGCATGT+TGG + Chr4:102171-102190 MsG0480018089.01.T01:intron 60.0%
CTAATGGAGCCACTGCCTCG+AGG - Chr4:98453-98472 None:intergenic 60.0%
GGCTCAGATATACCGGACGG+AGG + Chr4:100714-100733 MsG0480018089.01.T01:intron 60.0%
GGTCAGATATTCCGGGACGG+AGG - Chr4:100520-100539 None:intergenic 60.0%
TATTAGAGCCGCTGCCCACC+AGG - Chr4:100817-100836 None:intergenic 60.0%
TCTCCAGGCCAGGGATGTTC+AGG - Chr4:101408-101427 None:intergenic 60.0%
TGAGCCGGAAGGATAGGGGA+TGG + Chr4:101733-101752 MsG0480018089.01.T01:intron 60.0%
! AGAACTTGCTCCCGCCTGGA+AGG - Chr4:100001-100020 None:intergenic 60.0%
! AGGAAGAACCTGGTGGGCAG+CGG + Chr4:100806-100825 MsG0480018089.01.T01:intron 60.0%
! GCCTCAGGCGAGTTGGAACA+TGG - Chr4:102500-102519 None:intergenic 60.0%
! GGAGGTATGTTCTCCAGGCC+AGG - Chr4:101418-101437 None:intergenic 60.0%
!! TCCGGGACGGAGGGAGTATT+TGG - Chr4:100510-100529 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 97839 103289 97839 ID=MsG0480018089.01;Name=MsG0480018089.01
Chr4 mRNA 97839 103289 97839 ID=MsG0480018089.01.T01;Parent=MsG0480018089.01;Name=MsG0480018089.01.T01;_AED=0.48;_eAED=0.55;_QI=0|0.66|0.7|1|0.22|0.2|10|235|207
Chr4 exon 102147 102160 102147 ID=MsG0480018089.01.T01:exon:401;Parent=MsG0480018089.01.T01
Chr4 exon 102208 102343 102208 ID=MsG0480018089.01.T01:exon:402;Parent=MsG0480018089.01.T01
Chr4 exon 103238 103289 103238 ID=MsG0480018089.01.T01:exon:403;Parent=MsG0480018089.01.T01
Chr4 CDS 97839 98026 97839 ID=MsG0480018089.01.T01:cds;Parent=MsG0480018089.01.T01
Chr4 CDS 99760 99818 99760 ID=MsG0480018089.01.T01:cds;Parent=MsG0480018089.01.T01
Chr4 CDS 99921 100033 99921 ID=MsG0480018089.01.T01:cds;Parent=MsG0480018089.01.T01
Chr4 CDS 100146 100211 100146 ID=MsG0480018089.01.T01:cds;Parent=MsG0480018089.01.T01
Chr4 CDS 101054 101130 101054 ID=MsG0480018089.01.T01:cds;Parent=MsG0480018089.01.T01
Chr4 CDS 101207 101254 101207 ID=MsG0480018089.01.T01:cds;Parent=MsG0480018089.01.T01
Chr4 CDS 101337 101409 101337 ID=MsG0480018089.01.T01:cds;Parent=MsG0480018089.01.T01
Chr4 three_prime_UTR 101410 101442 101410 ID=MsG0480018089.01.T01:three_prime_utr;Parent=MsG0480018089.01.T01
Chr4 three_prime_UTR 102147 102160 102147 ID=MsG0480018089.01.T01:three_prime_utr;Parent=MsG0480018089.01.T01
Chr4 three_prime_UTR 102208 102343 102208 ID=MsG0480018089.01.T01:three_prime_utr;Parent=MsG0480018089.01.T01
Chr4 three_prime_UTR 103238 103289 103238 ID=MsG0480018089.01.T01:three_prime_utr;Parent=MsG0480018089.01.T01
Chr4 mRNA 97839 102381 97839 ID=MsG0480018089.01.T02;Parent=MsG0480018089.01;Name=MsG0480018089.01.T02;_AED=0.47;_eAED=0.53;_QI=0|0.62|0.66|1|0.25|0.33|9|455|207
Chr4 exon 101337 101447 101337 ID=MsG0480018089.01.T02:exon:404;Parent=MsG0480018089.01.T02
Chr4 exon 101799 101980 101799 ID=MsG0480018089.01.T02:exon:405;Parent=MsG0480018089.01.T02
Chr4 CDS 97839 98026 97839 ID=MsG0480018089.01.T02:cds;Parent=MsG0480018089.01.T02
Chr4 CDS 99760 99818 99760 ID=MsG0480018089.01.T02:cds;Parent=MsG0480018089.01.T02
Chr4 CDS 99921 100033 99921 ID=MsG0480018089.01.T02:cds;Parent=MsG0480018089.01.T02
Chr4 CDS 100146 100211 100146 ID=MsG0480018089.01.T02:cds;Parent=MsG0480018089.01.T02
Chr4 CDS 101054 101130 101054 ID=MsG0480018089.01.T02:cds;Parent=MsG0480018089.01.T02
Chr4 CDS 101207 101254 101207 ID=MsG0480018089.01.T02:cds;Parent=MsG0480018089.01.T02
Chr4 CDS 101337 101409 101337 ID=MsG0480018089.01.T02:cds;Parent=MsG0480018089.01.T02
Chr4 three_prime_UTR 101410 101447 101410 ID=MsG0480018089.01.T02:three_prime_utr;Parent=MsG0480018089.01.T02
Chr4 three_prime_UTR 101799 101980 101799 ID=MsG0480018089.01.T02:three_prime_utr;Parent=MsG0480018089.01.T02
Chr4 three_prime_UTR 102147 102381 102147 ID=MsG0480018089.01.T02:three_prime_utr;Parent=MsG0480018089.01.T02
Chr4 mRNA 97839 102094 97839 ID=MsG0480018089.01.T03;Parent=MsG0480018089.01;Name=MsG0480018089.01.T03;_AED=0.48;_eAED=0.54;_QI=0|0.62|0.66|1|0.25|0.22|9|296|207
Chr4 exon 101799 101909 101799 ID=MsG0480018089.01.T03:exon:407;Parent=MsG0480018089.01.T03
Chr4 exon 101943 102094 101943 ID=MsG0480018089.01.T03:exon:408;Parent=MsG0480018089.01.T03
Chr4 CDS 97839 98026 97839 ID=MsG0480018089.01.T03:cds;Parent=MsG0480018089.01.T03
Chr4 CDS 99760 99818 99760 ID=MsG0480018089.01.T03:cds;Parent=MsG0480018089.01.T03
Chr4 CDS 99921 100033 99921 ID=MsG0480018089.01.T03:cds;Parent=MsG0480018089.01.T03
Chr4 CDS 100146 100211 100146 ID=MsG0480018089.01.T03:cds;Parent=MsG0480018089.01.T03
Chr4 CDS 101054 101130 101054 ID=MsG0480018089.01.T03:cds;Parent=MsG0480018089.01.T03
Chr4 CDS 101207 101254 101207 ID=MsG0480018089.01.T03:cds;Parent=MsG0480018089.01.T03
Chr4 CDS 101337 101409 101337 ID=MsG0480018089.01.T03:cds;Parent=MsG0480018089.01.T03
Chr4 three_prime_UTR 101410 101442 101410 ID=MsG0480018089.01.T03:three_prime_utr;Parent=MsG0480018089.01.T03
Chr4 three_prime_UTR 101799 101909 101799 ID=MsG0480018089.01.T03:three_prime_utr;Parent=MsG0480018089.01.T03
Chr4 three_prime_UTR 101943 102094 101943 ID=MsG0480018089.01.T03:three_prime_utr;Parent=MsG0480018089.01.T03
Chr4 mRNA 97839 102381 97839 ID=MsG0480018089.01.T04;Parent=MsG0480018089.01;Name=MsG0480018089.01.T04;_AED=0.48;_eAED=0.54;_QI=0|0.57|0.62|1|0.28|0.37|8|268|207
Chr4 CDS 97839 98026 97839 ID=MsG0480018089.01.T04:cds;Parent=MsG0480018089.01.T04
Chr4 CDS 99760 99818 99760 ID=MsG0480018089.01.T04:cds;Parent=MsG0480018089.01.T04
Chr4 CDS 99921 100033 99921 ID=MsG0480018089.01.T04:cds;Parent=MsG0480018089.01.T04
Chr4 CDS 100146 100211 100146 ID=MsG0480018089.01.T04:cds;Parent=MsG0480018089.01.T04
Chr4 CDS 101054 101130 101054 ID=MsG0480018089.01.T04:cds;Parent=MsG0480018089.01.T04
Chr4 CDS 101207 101254 101207 ID=MsG0480018089.01.T04:cds;Parent=MsG0480018089.01.T04
Chr4 CDS 101337 101409 101337 ID=MsG0480018089.01.T04:cds;Parent=MsG0480018089.01.T04
Chr4 three_prime_UTR 101410 101442 101410 ID=MsG0480018089.01.T04:three_prime_utr;Parent=MsG0480018089.01.T04
Chr4 three_prime_UTR 102147 102381 102147 ID=MsG0480018089.01.T04:three_prime_utr;Parent=MsG0480018089.01.T04
Gene Sequence

>MsG0480018089.01.T02

ATGAGTTCATCTGTCATGATAGGTATGAGGGCTTGGTTCTCTCTGTTGGCGCAATGGAAGACCTTATGTATTAATTCTAGAAGCTGGTCCTTCAGGGATCCAAGTCAGAGTAAATTGTATTTTGCAAGAATTAGTACAAAAGTAGGATTTTGTAGGGTAAGAATCATTCTCATTTTAGTGGCTCTATGTGTGAAAAATACTTCTGCAGCAAGCATTCTTTCACTTCTTGCTTGCCTGCTTGATTCTATTTTGCATGTGAATATGCCGCAGACTGGACAAGAAACCGATTTTGTCTTAGTTTCATGTTCTGGCCTTGGTATTGAGCCTTCCAGGCGGGAGCAAGTTCTTAAAGCCAAGAGGGCAGGTGAAGATTCCTTGAGAAGATCTGGGCTTGGATACACAATAGTTCGTCCGGGTCCATTGCAGGGCATCAGTTGTGCTGATGTGGCCGATATATGTGTGAAGGCACTCCATGATTCAACTGCAAGAACAAAAGCTTTGATGTATGTTACGAGTACGTTGCTGAGGATGGGAATGAGCTTTATGAGCTGGTTGCCCACCTTGCCGGACAAAGCAAATAACTATCTGACACCAGCTCTCTCTGTCTTGGAGAAGAATACCTGA

>MsG0480018089.01.T03

ATGAGTTCATCTGTCATGATAGGTATGAGGGCTTGGTTCTCTCTGTTGGCGCAATGGAAGACCTTATGTATTAATTCTAGAAGCTGGTCCTTCAGGGATCCAAGTCAGAGTAAATTGTATTTTGCAAGAATTAGTACAAAAGTAGGATTTTGTAGGGTAAGAATCATTCTCATTTTAGTGGCTCTATGTGTGAAAAATACTTCTGCAGCAAGCATTCTTTCACTTCTTGCTTGCCTGCTTGATTCTATTTTGCATGTGAATATGCCGCAGACTGGACAAGAAACCGATTTTGTCTTAGTTTCATGTTCTGGCCTTGGTATTGAGCCTTCCAGGCGGGAGCAAGTTCTTAAAGCCAAGAGGGCAGGTGAAGATTCCTTGAGAAGATCTGGGCTTGGATACACAATAGTTCGTCCGGGTCCATTGCAGGGCATCAGTTGTGCTGATGTGGCCGATATATGTGTGAAGGCACTCCATGATTCAACTGCAAGAACAAAAGCTTTGATGTATGTTACGAGTACGTTGCTGAGGATGGGAATGAGCTTTATGAGCTGGTTGCCCACCTTGCCGGACAAAGCAAATAACTATCTGACACCAGCTCTCTCTGTCTTGGAGAAGAATACCTGA

>MsG0480018089.01.T01

ATGAGTTCATCTGTCATGATAGGTATGAGGGCTTGGTTCTCTCTGTTGGCGCAATGGAAGACCTTATGTATTAATTCTAGAAGCTGGTCCTTCAGGGATCCAAGTCAGAGTAAATTGTATTTTGCAAGAATTAGTACAAAAGTAGGATTTTGTAGGGTAAGAATCATTCTCATTTTAGTGGCTCTATGTGTGAAAAATACTTCTGCAGCAAGCATTCTTTCACTTCTTGCTTGCCTGCTTGATTCTATTTTGCATGTGAATATGCCGCAGACTGGACAAGAAACCGATTTTGTCTTAGTTTCATGTTCTGGCCTTGGTATTGAGCCTTCCAGGCGGGAGCAAGTTCTTAAAGCCAAGAGGGCAGGTGAAGATTCCTTGAGAAGATCTGGGCTTGGATACACAATAGTTCGTCCGGGTCCATTGCAGGGCATCAGTTGTGCTGATGTGGCCGATATATGTGTGAAGGCACTCCATGATTCAACTGCAAGAACAAAAGCTTTGATGTATGTTACGAGTACGTTGCTGAGGATGGGAATGAGCTTTATGAGCTGGTTGCCCACCTTGCCGGACAAAGCAAATAACTATCTGACACCAGCTCTCTCTGTCTTGGAGAAGAATACCTGA

>MsG0480018089.01.T04

ATGAGTTCATCTGTCATGATAGGTATGAGGGCTTGGTTCTCTCTGTTGGCGCAATGGAAGACCTTATGTATTAATTCTAGAAGCTGGTCCTTCAGGGATCCAAGTCAGAGTAAATTGTATTTTGCAAGAATTAGTACAAAAGTAGGATTTTGTAGGGTAAGAATCATTCTCATTTTAGTGGCTCTATGTGTGAAAAATACTTCTGCAGCAAGCATTCTTTCACTTCTTGCTTGCCTGCTTGATTCTATTTTGCATGTGAATATGCCGCAGACTGGACAAGAAACCGATTTTGTCTTAGTTTCATGTTCTGGCCTTGGTATTGAGCCTTCCAGGCGGGAGCAAGTTCTTAAAGCCAAGAGGGCAGGTGAAGATTCCTTGAGAAGATCTGGGCTTGGATACACAATAGTTCGTCCGGGTCCATTGCAGGGCATCAGTTGTGCTGATGTGGCCGATATATGTGTGAAGGCACTCCATGATTCAACTGCAAGAACAAAAGCTTTGATGTATGTTACGAGTACGTTGCTGAGGATGGGAATGAGCTTTATGAGCTGGTTGCCCACCTTGCCGGACAAAGCAAATAACTATCTGACACCAGCTCTCTCTGTCTTGGAGAAGAATACCTGA

Protein sequence

>MsG0480018089.01.T02

MSSSVMIGMRAWFSLLAQWKTLCINSRSWSFRDPSQSKLYFARISTKVGFCRVRIILILVALCVKNTSAASILSLLACLLDSILHVNMPQTGQETDFVLVSCSGLGIEPSRREQVLKAKRAGEDSLRRSGLGYTIVRPGPLQGISCADVADICVKALHDSTARTKALMYVTSTLLRMGMSFMSWLPTLPDKANNYLTPALSVLEKNT*

>MsG0480018089.01.T03

MSSSVMIGMRAWFSLLAQWKTLCINSRSWSFRDPSQSKLYFARISTKVGFCRVRIILILVALCVKNTSAASILSLLACLLDSILHVNMPQTGQETDFVLVSCSGLGIEPSRREQVLKAKRAGEDSLRRSGLGYTIVRPGPLQGISCADVADICVKALHDSTARTKALMYVTSTLLRMGMSFMSWLPTLPDKANNYLTPALSVLEKNT*

>MsG0480018089.01.T01

MSSSVMIGMRAWFSLLAQWKTLCINSRSWSFRDPSQSKLYFARISTKVGFCRVRIILILVALCVKNTSAASILSLLACLLDSILHVNMPQTGQETDFVLVSCSGLGIEPSRREQVLKAKRAGEDSLRRSGLGYTIVRPGPLQGISCADVADICVKALHDSTARTKALMYVTSTLLRMGMSFMSWLPTLPDKANNYLTPALSVLEKNT*

>MsG0480018089.01.T04

MSSSVMIGMRAWFSLLAQWKTLCINSRSWSFRDPSQSKLYFARISTKVGFCRVRIILILVALCVKNTSAASILSLLACLLDSILHVNMPQTGQETDFVLVSCSGLGIEPSRREQVLKAKRAGEDSLRRSGLGYTIVRPGPLQGISCADVADICVKALHDSTARTKALMYVTSTLLRMGMSFMSWLPTLPDKANNYLTPALSVLEKNT*