AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020350.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020350.01.T01 MTR_4g048590 97.991 448 9 0 1 448 1 448 0.0 872
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020350.01.T01 AT2G32480 70.575 452 124 5 1 448 1 447 0.0 610
MsG0480020350.01.T01 AT1G05140 69.420 448 130 3 1 448 1 441 0.0 581
MsG0480020350.01.T01 AT2G32480 65.044 452 112 6 1 448 1 410 0.0 539

Find 101 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGCAAAACATATTTCTT+AGG 0.150211 4:+39600486 None:intergenic
TTTGATGGAACTGGTAAAAT+TGG 0.151233 4:-39600411 MsG0480020350.01.T01:CDS
ACCTTAGACAACTTGATATT+TGG 0.152211 4:+39600375 None:intergenic
GCATTAAACTTCGCTAAAAT+TGG 0.172232 4:+39600894 None:intergenic
CATCCGGTGTTACCCTAATT+TGG 0.172313 4:+39600439 None:intergenic
TCGCGAGATGGATTGCTTTC+GGG 0.208520 4:-39600597 MsG0480020350.01.T01:CDS
CAGACAGCTAGTAAGGTTTC+AGG 0.219254 4:-39600246 MsG0480020350.01.T01:CDS
TTTCCTCTTGGTGGGTTTGT+AGG 0.241165 4:-39600843 MsG0480020350.01.T01:CDS
GCAATTGGTGGATTTGATTA+TGG 0.246708 4:-39601053 MsG0480020350.01.T01:CDS
CCTTCTACCTTTGCCGGCTT+TGG 0.253627 4:-39600121 MsG0480020350.01.T01:CDS
CCTTTACTGCGAAAGAGTTT+TGG 0.270072 4:-39600323 MsG0480020350.01.T01:CDS
GTGGACAAGACTTCCAAATT+AGG 0.275282 4:-39600452 MsG0480020350.01.T01:CDS
TTCGCGAGATGGATTGCTTT+CGG 0.282707 4:-39600598 MsG0480020350.01.T01:CDS
TTTCTTGCTGCTTCTCTTCA+AGG 0.306687 4:-39600951 MsG0480020350.01.T01:CDS
TATAAACCTTCTACCTTTGC+CGG 0.318608 4:-39600127 MsG0480020350.01.T01:CDS
TGAAATGGGTCTCTTTGAAT+TGG 0.322596 4:+39601214 None:intergenic
AGATAGGATTATTGTGGTTT+CGG 0.324636 4:-39600748 MsG0480020350.01.T01:CDS
CCTGTTCAAGAAATATTTCC+TGG 0.325847 4:-39600657 MsG0480020350.01.T01:CDS
ACAATAATCCTATCTAATAT+TGG 0.336997 4:+39600756 None:intergenic
TCCAAATATCAAGTTGTCTA+AGG 0.338190 4:-39600376 MsG0480020350.01.T01:CDS
TTTGCATAATAAAAGTAATA+GGG 0.346347 4:-39601096 MsG0480020350.01.T01:CDS
TCACTATCTGGATCATTATC+AGG 0.350050 4:+39600816 None:intergenic
TAAGAGTATCGCGAATAATA+AGG 0.350606 4:+39599977 None:intergenic
AGTAAATTTGCTGTTGGGTT+TGG 0.354648 4:-39600918 MsG0480020350.01.T01:CDS
CGCAAGGTTAATATTCAGTA+TGG 0.371211 4:+39600152 None:intergenic
AGCAAATTTACATCATCAAC+AGG 0.372749 4:+39600789 None:intergenic
ACTCATTTCCATTAACTTCA+AGG 0.373694 4:+39600565 None:intergenic
TGGAAATGAGTTTCTTAAAC+CGG 0.376084 4:-39600553 MsG0480020350.01.T01:CDS
TATTCAGTATGGCTGCAAAT+TGG 0.383073 4:+39600163 None:intergenic
AGAATAGGCCAATATTAGAT+AGG 0.388666 4:-39600764 MsG0480020350.01.T01:CDS
CCAGGAAATATTTCTTGAAC+AGG 0.391939 4:+39600657 None:intergenic
TTCCTCTTGGTGGGTTTGTA+GGG 0.392433 4:-39600842 MsG0480020350.01.T01:CDS
TCAACAGGAATATCACTATC+TGG 0.396061 4:+39600804 None:intergenic
TCTCGCGAAGCAGCCGAAAA+AGG 0.396574 4:+39600612 None:intergenic
TTTGATTATGGAAGCTTTGA+AGG 0.401275 4:-39601041 MsG0480020350.01.T01:CDS
ACCAAGAGGAAAAGCTCTAA+TGG 0.408745 4:+39600854 None:intergenic
CTACCTTTGCCGGCTTTGGA+TGG 0.409600 4:-39600117 MsG0480020350.01.T01:CDS
ATGTAAATTTGCTTAAGAAT+AGG 0.411294 4:-39600779 MsG0480020350.01.T01:CDS
TGATTCTCGTTGAGGCTGCT+AGG 0.412953 4:-39600080 MsG0480020350.01.T01:CDS
CCAAAGCCGGCAAAGGTAGA+AGG 0.413746 4:+39600121 None:intergenic
ATCATTGTTGTTCATGAAAG+TGG 0.414510 4:-39600978 MsG0480020350.01.T01:CDS
TAAGCAAAACATATTTCTTA+GGG 0.418908 4:+39600487 None:intergenic
GTGGAGTGTGAAGGTGGAGA+AGG 0.425687 4:+39601254 None:intergenic
GCTTAAGGAAGAATCTGAAA+TGG 0.426413 4:+39601199 None:intergenic
TTTAGGACATGTAGAGCAAT+TGG 0.435369 4:-39601068 MsG0480020350.01.T01:CDS
GGTGGTGAGTTTCACGTTTG+AGG 0.439324 4:+39601130 None:intergenic
TTCTTGCTGCTTCTCTTCAA+GGG 0.444308 4:-39600950 MsG0480020350.01.T01:CDS
GATTCTCGTTGAGGCTGCTA+GGG 0.458753 4:-39600079 MsG0480020350.01.T01:CDS
CTTAAGGAAGAATCTGAAAT+GGG 0.469198 4:+39601200 None:intergenic
CATAATAAAAGTAATAGGGT+TGG 0.475406 4:-39601092 MsG0480020350.01.T01:CDS
TGGACAAGACTTCCAAATTA+GGG 0.477393 4:-39600451 MsG0480020350.01.T01:CDS
CGCGAGATGGATTGCTTTCG+GGG 0.481162 4:-39600596 MsG0480020350.01.T01:CDS
CCAAAACTCTTTCGCAGTAA+AGG 0.485882 4:+39600323 None:intergenic
ATATCAAGTTGTCTAAGGTT+AGG 0.485892 4:-39600371 MsG0480020350.01.T01:CDS
GATGTGATCCTTGAAGTTAA+TGG 0.487486 4:-39600573 MsG0480020350.01.T01:CDS
CTCGTTGAGGCTGCTAGGGG+CGG 0.494547 4:-39600075 MsG0480020350.01.T01:CDS
ATGTGAGTAAATTTGCTGTT+GGG 0.501004 4:-39600923 MsG0480020350.01.T01:CDS
CATGTGAGTAAATTTGCTGT+TGG 0.509127 4:-39600924 MsG0480020350.01.T01:CDS
GTGAAGGTGGAGAAGGAGAG+AGG 0.509612 4:+39601261 None:intergenic
GGAAATGAGTTTCTTAAACC+GGG 0.513002 4:-39600552 MsG0480020350.01.T01:CDS
CCTTTGCCGGCTTTGGATGG+AGG 0.518561 4:-39600114 MsG0480020350.01.T01:CDS
ATTTCCTGGTGTTAATGTGC+CGG 0.527007 4:-39600643 MsG0480020350.01.T01:CDS
GGCTTTGGATGGAGGAACAT+TGG 0.527349 4:-39600106 MsG0480020350.01.T01:CDS
GAGCAACGGATCATGTCATC+GGG 0.527646 4:-39600030 MsG0480020350.01.T01:CDS
TGAATTGGATAATCTGATGA+TGG 0.528552 4:+39601229 None:intergenic
TTTGTTCAAATCCTAGCTGT+TGG 0.531378 4:-39600684 MsG0480020350.01.T01:CDS
AGGATTATTGTGGTTTCGGC+CGG 0.533130 4:-39600744 MsG0480020350.01.T01:CDS
GTTCCATCAAAATTCTCATC+CGG 0.534764 4:+39600423 None:intergenic
TCGTTGAGGCTGCTAGGGGC+GGG 0.534787 4:-39600074 MsG0480020350.01.T01:CDS
TTGCTTAAGGTTAAGAGGGG+TGG 0.536831 4:-39600471 MsG0480020350.01.T01:CDS
AATATTAGATAGGATTATTG+TGG 0.545638 4:-39600754 MsG0480020350.01.T01:CDS
AGGACATGTAGAGCAATTGG+TGG 0.546380 4:-39601065 MsG0480020350.01.T01:CDS
CCTGTAGCGATTATTGCTGT+TGG 0.546565 4:-39600222 MsG0480020350.01.T01:CDS
GAGAAAGCTACCTATGGAGG+TGG 0.552065 4:-39600052 MsG0480020350.01.T01:CDS
ATGGAAGTGGAGTGTGAAGG+TGG 0.552908 4:+39601248 None:intergenic
GTAGAAGGTTTATAATCGCA+AGG 0.560958 4:+39600136 None:intergenic
GGAGCAACGGATCATGTCAT+CGG 0.563395 4:-39600031 MsG0480020350.01.T01:CDS
CCTCCATCCAAAGCCGGCAA+AGG 0.567047 4:+39600114 None:intergenic
CCAACAGCAATAATCGCTAC+AGG 0.569279 4:+39600222 None:intergenic
CGGGAGAAAGCTACCTATGG+AGG 0.569640 4:-39600055 MsG0480020350.01.T01:CDS
GGATAATCTGATGATGGAAG+TGG 0.572528 4:+39601235 None:intergenic
ATCCGTTGCTCCACCTCCAT+AGG 0.578020 4:+39600042 None:intergenic
GGGCGGGAGAAAGCTACCTA+TGG 0.580226 4:-39600058 MsG0480020350.01.T01:CDS
AATGTTCCTCCATCCAAAGC+CGG 0.580400 4:+39600108 None:intergenic
ATTGGCGTTGATTCTCGTTG+AGG 0.585481 4:-39600088 MsG0480020350.01.T01:CDS
TCAGAAACAGAATTAGACCC+CGG 0.597170 4:+39600534 None:intergenic
TACCTATGGAGGTGGAGCAA+CGG 0.602168 4:-39600044 MsG0480020350.01.T01:CDS
TCCTGGTGTTAATGTGCCGG+AGG 0.611572 4:-39600640 MsG0480020350.01.T01:CDS
GTTGCGCGGTCGAACATCGA+TGG 0.614112 4:-39600192 MsG0480020350.01.T01:CDS
GAAATGAGTTTCTTAAACCG+GGG 0.615818 4:-39600551 MsG0480020350.01.T01:CDS
GAACAGGCAAACCAACAGCT+AGG 0.623624 4:+39600673 None:intergenic
AATAACATTTGCAATAACAC+CGG 0.631202 4:+39600725 None:intergenic
ATTCTCGTTGAGGCTGCTAG+GGG 0.640021 4:-39600078 MsG0480020350.01.T01:CDS
ACCTCCGGCACATTAACACC+AGG 0.640101 4:+39600639 None:intergenic
CTTCCAAATTAGGGTAACAC+CGG 0.651525 4:-39600442 MsG0480020350.01.T01:CDS
AACCCTACAAACCCACCAAG+AGG 0.655878 4:+39600840 None:intergenic
AGGAGAGAGGTATATGACCA+TGG 0.656468 4:+39601274 None:intergenic
GCGAGATGGATTGCTTTCGG+GGG 0.672901 4:-39600595 MsG0480020350.01.T01:CDS
GCAGCTTCAAGCACAGACTG+AGG 0.679498 4:+39601017 None:intergenic
CTGTTGGTGCAGAAGTTGCG+CGG 0.693355 4:-39600206 MsG0480020350.01.T01:CDS
ATGATGGAAGTGGAGTGTGA+AGG 0.712835 4:+39601245 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGCATAATAAAAGTAATA+GGG - Chr4:39600124-39600143 MsG0480020350.01.T01:CDS 15.0%
!!! TTTTGCATAATAAAAGTAAT+AGG - Chr4:39600123-39600142 MsG0480020350.01.T01:CDS 15.0%
!! AATATTAGATAGGATTATTG+TGG - Chr4:39600466-39600485 MsG0480020350.01.T01:CDS 20.0%
!! ACAATAATCCTATCTAATAT+TGG + Chr4:39600467-39600486 None:intergenic 20.0%
!! TAAGCAAAACATATTTCTTA+GGG + Chr4:39600736-39600755 None:intergenic 20.0%
!! TTAAGCAAAACATATTTCTT+AGG + Chr4:39600737-39600756 None:intergenic 20.0%
!!! ATGTAAATTTGCTTAAGAAT+AGG - Chr4:39600441-39600460 MsG0480020350.01.T01:CDS 20.0%
!!! TAAGAAATATGTTTTGCTTA+AGG - Chr4:39600736-39600755 MsG0480020350.01.T01:CDS 20.0%
! AATAACATTTGCAATAACAC+CGG + Chr4:39600498-39600517 None:intergenic 25.0%
! AGATTTCCTTGAAAAAATCA+AGG + Chr4:39601270-39601289 None:intergenic 25.0%
! CATAATAAAAGTAATAGGGT+TGG - Chr4:39600128-39600147 MsG0480020350.01.T01:CDS 25.0%
!!! AAAAAAGTGATTTTGAGAAG+TGG + Chr4:39600055-39600074 None:intergenic 25.0%
!!! AAAAAGTGATTTTGAGAAGT+GGG + Chr4:39600054-39600073 None:intergenic 25.0%
!!! TCTTAACCTTGATTTTTTCA+AGG - Chr4:39601261-39601280 MsG0480020350.01.T01:CDS 25.0%
ACCTTAGACAACTTGATATT+TGG + Chr4:39600848-39600867 None:intergenic 30.0%
ACTCATTTCCATTAACTTCA+AGG + Chr4:39600658-39600677 None:intergenic 30.0%
AGAATAGGCCAATATTAGAT+AGG - Chr4:39600456-39600475 MsG0480020350.01.T01:CDS 30.0%
AGATAGGATTATTGTGGTTT+CGG - Chr4:39600472-39600491 MsG0480020350.01.T01:CDS 30.0%
AGCAAATTTACATCATCAAC+AGG + Chr4:39600434-39600453 None:intergenic 30.0%
ATTATGCAAAAACTGCTTCT+TGG + Chr4:39600114-39600133 None:intergenic 30.0%
GCATTAAACTTCGCTAAAAT+TGG + Chr4:39600329-39600348 None:intergenic 30.0%
TGAATTGGATAATCTGATGA+TGG + Chr4:39599994-39600013 None:intergenic 30.0%
TGGAAATGAGTTTCTTAAAC+CGG - Chr4:39600667-39600686 MsG0480020350.01.T01:CDS 30.0%
TTTGATGGAACTGGTAAAAT+TGG - Chr4:39600809-39600828 MsG0480020350.01.T01:CDS 30.0%
! ATATCAAGTTGTCTAAGGTT+AGG - Chr4:39600849-39600868 MsG0480020350.01.T01:CDS 30.0%
! ATCATTGTTGTTCATGAAAG+TGG - Chr4:39600242-39600261 MsG0480020350.01.T01:CDS 30.0%
! ATGTTTTGCTTAAGGTTAAG+AGG - Chr4:39600744-39600763 MsG0480020350.01.T01:CDS 30.0%
! CTTAAGGAAGAATCTGAAAT+GGG + Chr4:39600023-39600042 None:intergenic 30.0%
! TCCAAATATCAAGTTGTCTA+AGG - Chr4:39600844-39600863 MsG0480020350.01.T01:CDS 30.0%
! TGTTTTGCTTAAGGTTAAGA+GGG - Chr4:39600745-39600764 MsG0480020350.01.T01:CDS 30.0%
! TTTGATTATGGAAGCTTTGA+AGG - Chr4:39600179-39600198 MsG0480020350.01.T01:CDS 30.0%
!! ATGTGAGTAAATTTGCTGTT+GGG - Chr4:39600297-39600316 MsG0480020350.01.T01:CDS 30.0%
!! TAAGAGTATCGCGAATAATA+AGG + Chr4:39601246-39601265 None:intergenic 30.0%
!! TATCGTCGAATGTTTTTGAT+GGG - Chr4:39600924-39600943 MsG0480020350.01.T01:CDS 30.0%
!! TTATCGTCGAATGTTTTTGA+TGG - Chr4:39600923-39600942 MsG0480020350.01.T01:CDS 30.0%
!!! AAAGTAATAGGGTTGGTTTT+AGG - Chr4:39600135-39600154 MsG0480020350.01.T01:CDS 30.0%
!!! ATTATGCTTGTTTTGCTTCT+TGG - Chr4:39601214-39601233 MsG0480020350.01.T01:CDS 30.0%
!!! TTATGCTTGTTTTGCTTCTT+GGG - Chr4:39601215-39601234 MsG0480020350.01.T01:CDS 30.0%
CCAGGAAATATTTCTTGAAC+AGG + Chr4:39600566-39600585 None:intergenic 35.0%
CCTGTTCAAGAAATATTTCC+TGG - Chr4:39600563-39600582 MsG0480020350.01.T01:CDS 35.0%
CGCAAGGTTAATATTCAGTA+TGG + Chr4:39601071-39601090 None:intergenic 35.0%
GAAATGAGTTTCTTAAACCG+GGG - Chr4:39600669-39600688 MsG0480020350.01.T01:CDS 35.0%
GATGTGATCCTTGAAGTTAA+TGG - Chr4:39600647-39600666 MsG0480020350.01.T01:CDS 35.0%
GCTTAAGGAAGAATCTGAAA+TGG + Chr4:39600024-39600043 None:intergenic 35.0%
GGAAATGAGTTTCTTAAACC+GGG - Chr4:39600668-39600687 MsG0480020350.01.T01:CDS 35.0%
GTAGAAGGTTTATAATCGCA+AGG + Chr4:39601087-39601106 None:intergenic 35.0%
GTTCCATCAAAATTCTCATC+CGG + Chr4:39600800-39600819 None:intergenic 35.0%
TATAAACCTTCTACCTTTGC+CGG - Chr4:39601093-39601112 MsG0480020350.01.T01:CDS 35.0%
TATTCAGTATGGCTGCAAAT+TGG + Chr4:39601060-39601079 None:intergenic 35.0%
TCAACAGGAATATCACTATC+TGG + Chr4:39600419-39600438 None:intergenic 35.0%
TCACTATCTGGATCATTATC+AGG + Chr4:39600407-39600426 None:intergenic 35.0%
TGAAATGGGTCTCTTTGAAT+TGG + Chr4:39600009-39600028 None:intergenic 35.0%
TGGACAAGACTTCCAAATTA+GGG - Chr4:39600769-39600788 MsG0480020350.01.T01:CDS 35.0%
TTTGTTCAAATCCTAGCTGT+TGG - Chr4:39600536-39600555 MsG0480020350.01.T01:CDS 35.0%
! ACAGCTTCCACTACATTTTT+CGG + Chr4:39600875-39600894 None:intergenic 35.0%
! CTTTACTGCGAAAGAGTTTT+GGG - Chr4:39600898-39600917 MsG0480020350.01.T01:CDS 35.0%
! GTTTTGCTTAAGGTTAAGAG+GGG - Chr4:39600746-39600765 MsG0480020350.01.T01:CDS 35.0%
! TTTACTGCGAAAGAGTTTTG+GGG - Chr4:39600899-39600918 MsG0480020350.01.T01:CDS 35.0%
! TTTAGGACATGTAGAGCAAT+TGG - Chr4:39600152-39600171 MsG0480020350.01.T01:CDS 35.0%
!! AGTAAATTTGCTGTTGGGTT+TGG - Chr4:39600302-39600321 MsG0480020350.01.T01:CDS 35.0%
!! CATGTGAGTAAATTTGCTGT+TGG - Chr4:39600296-39600315 MsG0480020350.01.T01:CDS 35.0%
!! GATGAGAATTTTGATGGAAC+TGG - Chr4:39600800-39600819 MsG0480020350.01.T01:CDS 35.0%
!! GCAATTGGTGGATTTGATTA+TGG - Chr4:39600167-39600186 MsG0480020350.01.T01:CDS 35.0%
ATGCAAAAACTGCTTCTTGG+TGG + Chr4:39600111-39600130 None:intergenic 40.0%
CCAAAACTCTTTCGCAGTAA+AGG + Chr4:39600900-39600919 None:intergenic 40.0%
CTTCCAAATTAGGGTAACAC+CGG - Chr4:39600778-39600797 MsG0480020350.01.T01:CDS 40.0%
GTGGACAAGACTTCCAAATT+AGG - Chr4:39600768-39600787 MsG0480020350.01.T01:CDS 40.0%
TCAGAAACAGAATTAGACCC+CGG + Chr4:39600689-39600708 None:intergenic 40.0%
! ACACCGGATGAGAATTTTGA+TGG - Chr4:39600794-39600813 MsG0480020350.01.T01:CDS 40.0%
! ACCAAGAGGAAAAGCTCTAA+TGG + Chr4:39600369-39600388 None:intergenic 40.0%
! ATTAGAGCTTTTCCTCTTGG+TGG - Chr4:39600368-39600387 MsG0480020350.01.T01:CDS 40.0%
! ATTTCCTGGTGTTAATGTGC+CGG - Chr4:39600577-39600596 MsG0480020350.01.T01:CDS 40.0%
! CCTTTACTGCGAAAGAGTTT+TGG - Chr4:39600897-39600916 MsG0480020350.01.T01:CDS 40.0%
! CTTTTCTCAGACAGCTAGTA+AGG - Chr4:39600967-39600986 MsG0480020350.01.T01:CDS 40.0%
! TCCATTAGAGCTTTTCCTCT+TGG - Chr4:39600365-39600384 MsG0480020350.01.T01:CDS 40.0%
! TTAGAGCTTTTCCTCTTGGT+GGG - Chr4:39600369-39600388 MsG0480020350.01.T01:CDS 40.0%
! TTCTTGCTGCTTCTCTTCAA+GGG - Chr4:39600270-39600289 MsG0480020350.01.T01:CDS 40.0%
! TTTCTTGCTGCTTCTCTTCA+AGG - Chr4:39600269-39600288 MsG0480020350.01.T01:CDS 40.0%
!! GGATAATCTGATGATGGAAG+TGG + Chr4:39599988-39600007 None:intergenic 40.0%
!!! GAAGTGGGTTTTGAAGCTTA+AGG + Chr4:39600039-39600058 None:intergenic 40.0%
AATGTTCCTCCATCCAAAGC+CGG + Chr4:39601115-39601134 None:intergenic 45.0%
AGGACATGTAGAGCAATTGG+TGG - Chr4:39600155-39600174 MsG0480020350.01.T01:CDS 45.0%
AGGATTATTGTGGTTTCGGC+CGG - Chr4:39600476-39600495 MsG0480020350.01.T01:CDS 45.0%
CAGACAGCTAGTAAGGTTTC+AGG - Chr4:39600974-39600993 MsG0480020350.01.T01:CDS 45.0%
CCAACAGCAATAATCGCTAC+AGG + Chr4:39601001-39601020 None:intergenic 45.0%
CCTGTAGCGATTATTGCTGT+TGG - Chr4:39600998-39601017 MsG0480020350.01.T01:CDS 45.0%
GGTTAGGCCGAAAAATGTAG+TGG - Chr4:39600865-39600884 MsG0480020350.01.T01:CDS 45.0%
TTGCTTAAGGTTAAGAGGGG+TGG - Chr4:39600749-39600768 MsG0480020350.01.T01:CDS 45.0%
! ATGATGGAAGTGGAGTGTGA+AGG + Chr4:39599978-39599997 None:intergenic 45.0%
!! ATTGGCGTTGATTCTCGTTG+AGG - Chr4:39601132-39601151 MsG0480020350.01.T01:CDS 45.0%
!! CATCCGGTGTTACCCTAATT+TGG + Chr4:39600784-39600803 None:intergenic 45.0%
!! TTCCTCTTGGTGGGTTTGTA+GGG - Chr4:39600378-39600397 MsG0480020350.01.T01:CDS 45.0%
!! TTCGCGAGATGGATTGCTTT+CGG - Chr4:39600622-39600641 MsG0480020350.01.T01:CDS 45.0%
!! TTTCCTCTTGGTGGGTTTGT+AGG - Chr4:39600377-39600396 MsG0480020350.01.T01:CDS 45.0%
AACCCTACAAACCCACCAAG+AGG + Chr4:39600383-39600402 None:intergenic 50.0%
ATGGAAGTGGAGTGTGAAGG+TGG + Chr4:39599975-39599994 None:intergenic 50.0%
ATTCTCGTTGAGGCTGCTAG+GGG - Chr4:39601142-39601161 MsG0480020350.01.T01:CDS 50.0%
GAACAGGCAAACCAACAGCT+AGG + Chr4:39600550-39600569 None:intergenic 50.0%
GAGAAAGCTACCTATGGAGG+TGG - Chr4:39601168-39601187 MsG0480020350.01.T01:CDS 50.0%
GAGCAACGGATCATGTCATC+GGG - Chr4:39601190-39601209 MsG0480020350.01.T01:CDS 50.0%
GATTCTCGTTGAGGCTGCTA+GGG - Chr4:39601141-39601160 MsG0480020350.01.T01:CDS 50.0%
GGAGCAACGGATCATGTCAT+CGG - Chr4:39601189-39601208 MsG0480020350.01.T01:CDS 50.0%
GGTGGTGAGTTTCACGTTTG+AGG + Chr4:39600093-39600112 None:intergenic 50.0%
TACCTATGGAGGTGGAGCAA+CGG - Chr4:39601176-39601195 MsG0480020350.01.T01:CDS 50.0%
TGATTCTCGTTGAGGCTGCT+AGG - Chr4:39601140-39601159 MsG0480020350.01.T01:CDS 50.0%
!! GGCTTTGGATGGAGGAACAT+TGG - Chr4:39601114-39601133 MsG0480020350.01.T01:CDS 50.0%
!! TCGCGAGATGGATTGCTTTC+GGG - Chr4:39600623-39600642 MsG0480020350.01.T01:CDS 50.0%
ACCTCCGGCACATTAACACC+AGG + Chr4:39600584-39600603 None:intergenic 55.0%
ATCCGTTGCTCCACCTCCAT+AGG + Chr4:39601181-39601200 None:intergenic 55.0%
CCAAAGCCGGCAAAGGTAGA+AGG + Chr4:39601102-39601121 None:intergenic 55.0%
CGGGAGAAAGCTACCTATGG+AGG - Chr4:39601165-39601184 MsG0480020350.01.T01:CDS 55.0%
CTGTTGGTGCAGAAGTTGCG+CGG - Chr4:39601014-39601033 MsG0480020350.01.T01:CDS 55.0%
GCAGCTTCAAGCACAGACTG+AGG + Chr4:39600206-39600225 None:intergenic 55.0%
GCCGAAAAAGGTCGAACCTC+CGG + Chr4:39600599-39600618 None:intergenic 55.0%
GTGAAGGTGGAGAAGGAGAG+AGG + Chr4:39599962-39599981 None:intergenic 55.0%
GTGGAGTGTGAAGGTGGAGA+AGG + Chr4:39599969-39599988 None:intergenic 55.0%
TCTCGCGAAGCAGCCGAAAA+AGG + Chr4:39600611-39600630 None:intergenic 55.0%
! GCCGGAGGTTCGACCTTTTT+CGG - Chr4:39600595-39600614 MsG0480020350.01.T01:CDS 55.0%
! TCCTGGTGTTAATGTGCCGG+AGG - Chr4:39600580-39600599 MsG0480020350.01.T01:CDS 55.0%
! TTTTCGGCTGCTTCGCGAGA+TGG - Chr4:39600611-39600630 MsG0480020350.01.T01:CDS 55.0%
!! CCTTCTACCTTTGCCGGCTT+TGG - Chr4:39601099-39601118 MsG0480020350.01.T01:CDS 55.0%
!! CGCGAGATGGATTGCTTTCG+GGG - Chr4:39600624-39600643 MsG0480020350.01.T01:CDS 55.0%
!! CTACCTTTGCCGGCTTTGGA+TGG - Chr4:39601103-39601122 MsG0480020350.01.T01:CDS 55.0%
!! GCGAGATGGATTGCTTTCGG+GGG - Chr4:39600625-39600644 MsG0480020350.01.T01:CDS 55.0%
CCTCCATCCAAAGCCGGCAA+AGG + Chr4:39601109-39601128 None:intergenic 60.0%
GGGCGGGAGAAAGCTACCTA+TGG - Chr4:39601162-39601181 MsG0480020350.01.T01:CDS 60.0%
GTTGCGCGGTCGAACATCGA+TGG - Chr4:39601028-39601047 MsG0480020350.01.T01:CDS 60.0%
!! CCTTTGCCGGCTTTGGATGG+AGG - Chr4:39601106-39601125 MsG0480020350.01.T01:CDS 60.0%
CTCGTTGAGGCTGCTAGGGG+CGG - Chr4:39601145-39601164 MsG0480020350.01.T01:CDS 65.0%
TCGTTGAGGCTGCTAGGGGC+GGG - Chr4:39601146-39601165 MsG0480020350.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 39599948 39601294 39599948 ID=MsG0480020350.01;Name=MsG0480020350.01
Chr4 mRNA 39599948 39601294 39599948 ID=MsG0480020350.01.T01;Parent=MsG0480020350.01;Name=MsG0480020350.01.T01;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|448
Chr4 exon 39599948 39601294 39599948 ID=MsG0480020350.01.T01:exon:16723;Parent=MsG0480020350.01.T01
Chr4 CDS 39599948 39601294 39599948 ID=MsG0480020350.01.T01:cds;Parent=MsG0480020350.01.T01
Gene Sequence

>MsG0480020350.01.T01

ATGGTCATATACCTCTCTCCTTCTCCACCTTCACACTCCACTTCCATCATCAGATTATCCAATTCAAAGAGACCCATTTCAGATTCTTCCTTAAGCTTCAAAACCCACTTCTCAAAATCACTTTTTTCTTCTTCATTCACTTCCTCAAACGTGAAACTCACCACCAAGAAGCAGTTTTTGCATAATAAAAGTAATAGGGTTGGTTTTAGGACATGTAGAGCAATTGGTGGATTTGATTATGGAAGCTTTGAAGGTCCTCAGTCTGTGCTTGAAGCTGCTGCTGTATTGACAGCTATCATTGTTGTTCATGAAAGTGGTCACTTTCTTGCTGCTTCTCTTCAAGGGATTCATGTGAGTAAATTTGCTGTTGGGTTTGGTCCAATTTTAGCGAAGTTTAATGCAAAAAATGTTGAATATTCCATTAGAGCTTTTCCTCTTGGTGGGTTTGTAGGGTTTCCTGATAATGATCCAGATAGTGATATTCCTGTTGATGATGTAAATTTGCTTAAGAATAGGCCAATATTAGATAGGATTATTGTGGTTTCGGCCGGTGTTATTGCAAATGTTATTTTTGCAATAGTTATTATATTTGTTCAAATCCTAGCTGTTGGTTTGCCTGTTCAAGAAATATTTCCTGGTGTTAATGTGCCGGAGGTTCGACCTTTTTCGGCTGCTTCGCGAGATGGATTGCTTTCGGGGGATGTGATCCTTGAAGTTAATGGAAATGAGTTTCTTAAACCGGGGTCTAATTCTGTTTCTGAAGTTGTTGATGTCATTAAGAGTAGCCCTAAGAAATATGTTTTGCTTAAGGTTAAGAGGGGTGGACAAGACTTCCAAATTAGGGTAACACCGGATGAGAATTTTGATGGAACTGGTAAAATTGGAGTTCAGTTAGCTCCAAATATCAAGTTGTCTAAGGTTAGGCCGAAAAATGTAGTGGAAGCTGTGACCTTTACTGCGAAAGAGTTTTGGGGTTTATCGTCGAATGTTTTTGATGGGTTAAAGCAGACATTTTTGAACTTTTCTCAGACAGCTAGTAAGGTTTCAGGTCCTGTAGCGATTATTGCTGTTGGTGCAGAAGTTGCGCGGTCGAACATCGATGGTCTCTACCAATTTGCAGCCATACTGAATATTAACCTTGCGATTATAAACCTTCTACCTTTGCCGGCTTTGGATGGAGGAACATTGGCGTTGATTCTCGTTGAGGCTGCTAGGGGCGGGAGAAAGCTACCTATGGAGGTGGAGCAACGGATCATGTCATCGGGAATTATGCTTGTTTTGCTTCTTGGGTTATACCTTATTATTCGCGATACTCTTAACCTTGATTTTTTCAAGGAAATCTTGTAA

Protein sequence

>MsG0480020350.01.T01

MVIYLSPSPPSHSTSIIRLSNSKRPISDSSLSFKTHFSKSLFSSSFTSSNVKLTTKKQFLHNKSNRVGFRTCRAIGGFDYGSFEGPQSVLEAAAVLTAIIVVHESGHFLAASLQGIHVSKFAVGFGPILAKFNAKNVEYSIRAFPLGGFVGFPDNDPDSDIPVDDVNLLKNRPILDRIIVVSAGVIANVIFAIVIIFVQILAVGLPVQEIFPGVNVPEVRPFSAASRDGLLSGDVILEVNGNEFLKPGSNSVSEVVDVIKSSPKKYVLLKVKRGGQDFQIRVTPDENFDGTGKIGVQLAPNIKLSKVRPKNVVEAVTFTAKEFWGLSSNVFDGLKQTFLNFSQTASKVSGPVAIIAVGAEVARSNIDGLYQFAAILNINLAIINLLPLPALDGGTLALILVEAARGGRKLPMEVEQRIMSSGIMLVLLLGLYLIIRDTLNLDFFKEIL*