AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013996.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013996.01.T01 MTR_4g051245 100.000 118 0 0 16 133 3 120 6.82e-79 228
MsG0380013996.01.T01 MTR_3g035740 100.000 68 0 0 16 83 38 105 1.32e-42 137
MsG0380013996.01.T01 MTR_5g090760 87.500 56 7 0 16 71 129 184 6.70e-27 99.4
MsG0380013996.01.T01 MTR_0082s0040 39.241 79 48 0 51 129 152 230 6.51e-15 70.1
MsG0380013996.01.T01 MTR_7g076390 65.306 49 16 1 8 56 2 49 4.06e-14 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013996.01.T01 ATCG00440 90.678 118 11 0 16 133 3 120 1.70e-72 212
MsG0380013996.01.T01 ATMG00990 39.506 81 49 0 51 131 36 116 6.64e-18 74.3
MsG0380013996.01.T01 AT2G07751 39.506 81 49 0 51 131 36 116 6.64e-18 74.3

Find 25 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGATCTTTATTCCTATTT+TGG 0.106455 3:-48601359 MsG0380013996.01.T01:CDS
GAAATCAGAAATGCCAAAAT+AGG 0.275054 3:+48601346 None:intergenic
AAACTTTCTAGTTATGAATC+TGG 0.326530 3:-48601289 MsG0380013996.01.T01:CDS
TTCGTCCTTATCCTAATTGT+TGG 0.355204 3:-48601109 MsG0380013996.01.T01:CDS
CATAAACTAAACCAACAATT+AGG 0.360505 3:+48601098 None:intergenic
GATGAAAGCTTCTATAAATA+CGG 0.441914 3:+48601132 None:intergenic
AACTTTCTAGTTATGAATCT+GGG 0.461336 3:-48601288 MsG0380013996.01.T01:CDS
TTCAAGTCTACCGGTCTGTT+AGG 0.468755 3:+48607248 None:intergenic
AAACAGTCTTTCTTTACCCA+TGG 0.490928 3:-48601183 MsG0380013996.01.T01:CDS
CTAAACCAACAATTAGGATA+AGG 0.503195 3:+48601104 None:intergenic
TAGAACCGATGGGCGATGCT+TGG 0.504444 3:-48601264 MsG0380013996.01.T01:CDS
TTGTTGGTTTAGTTTATGCA+TGG 0.529511 3:-48601093 MsG0380013996.01.T01:CDS
AACAGTCTTTCTTTACCCAT+GGG 0.543993 3:-48601182 MsG0380013996.01.T01:CDS
GGCGGAAGGGAGCATTAGAA+TGG 0.551011 3:-48601072 MsG0380013996.01.T01:CDS
TTTAGTTTATGCATGGCGGA+AGG 0.557911 3:-48601086 MsG0380013996.01.T01:CDS
TGAATCTGGGATAGAACCGA+TGG 0.558151 3:-48601275 MsG0380013996.01.T01:CDS
ACATCAAAACTCATTGCCCA+TGG 0.560584 3:+48601166 None:intergenic
CTAGAGCAAACATATAATAA+CGG 0.568609 3:+48601227 None:intergenic
TGCAGTAATGTATGCAGCTG+AGG 0.587244 3:-48607273 None:intergenic
TTAGTTTATGCATGGCGGAA+GGG 0.588132 3:-48601085 MsG0380013996.01.T01:CDS
AGCTGAGGATCCTAACAGAC+CGG 0.588576 3:-48607258 MsG0380013996.01.T01:intron
CATCAAAACTCATTGCCCAT+GGG 0.596446 3:+48601167 None:intergenic
TGTAACCAAGCATCGCCCAT+CGG 0.642657 3:+48601259 None:intergenic
GAATCTGGGATAGAACCGAT+GGG 0.671944 3:-48601274 MsG0380013996.01.T01:CDS
TTGGTTTAGTTTATGCATGG+CGG 0.690036 3:-48601090 MsG0380013996.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATAAAAAAAAAAATAGA+AGG - Chr3:48605131-48605150 MsG0380013996.01.T01:intron 10.0%
!! CTTAAATAAAAATATCAAAT+AGG + Chr3:48606109-48606128 None:intergenic 10.0%
!! TATCTTATTATATGATAATA+TGG + Chr3:48602535-48602554 None:intergenic 10.0%
!!! CTTCTATTTTTTTTTTTATT+AGG + Chr3:48605133-48605152 None:intergenic 10.0%
!!! TGAATTCTAAAAATTTTTAT+TGG + Chr3:48604950-48604969 None:intergenic 10.0%
!!! TTTATGAATATGATATTTTT+TGG - Chr3:48606936-48606955 MsG0380013996.01.T01:intron 10.0%
!!! TTTGATATTTTTATTTAAGT+AGG - Chr3:48606110-48606129 MsG0380013996.01.T01:intron 10.0%
!! AAATGATATTACTAAGTAAA+TGG + Chr3:48602610-48602629 None:intergenic 15.0%
!! AATTACTATTAATAGAAAGA+AGG + Chr3:48604433-48604452 None:intergenic 15.0%
!! ATAATGAATTGTCTAATTAT+TGG - Chr3:48604129-48604148 MsG0380013996.01.T01:intron 15.0%
!! ATCTAATTATACGTTAAAAA+AGG + Chr3:48604781-48604800 None:intergenic 15.0%
!! ATTTCATCAGTATAAAAATA+TGG + Chr3:48603677-48603696 None:intergenic 15.0%
!! CTATTTGAATAGATTAATAT+TGG - Chr3:48606668-48606687 MsG0380013996.01.T01:intron 15.0%
!! TAAGAATAACAATTTATTGT+TGG + Chr3:48603435-48603454 None:intergenic 15.0%
!! TAATTATATTCCATAGTATA+TGG - Chr3:48606558-48606577 MsG0380013996.01.T01:intron 15.0%
!! TTATTATATGATAATATGGA+TGG + Chr3:48602531-48602550 None:intergenic 15.0%
!!! AAGCAATGAATTTTTTAAAA+GGG - Chr3:48604184-48604203 MsG0380013996.01.T01:intron 15.0%
!!! ATGAATCTTATTTATCAAAA+TGG + Chr3:48604405-48604424 None:intergenic 15.0%
!!! ATTTTGATAAATAAGATTCA+TGG - Chr3:48604404-48604423 MsG0380013996.01.T01:intron 15.0%
!!! CTTTCTTTTTTCTTTATTAT+TGG + Chr3:48604159-48604178 None:intergenic 15.0%
!!! TAAGCAATGAATTTTTTAAA+AGG - Chr3:48604183-48604202 MsG0380013996.01.T01:intron 15.0%
!!! TTTTCATTTTGTTAATTCTT+CGG - Chr3:48601922-48601941 MsG0380013996.01.T01:intron 15.0%
!! AAAAACAAATGAATATGTCT+CGG + Chr3:48605592-48605611 None:intergenic 20.0%
!! AAACAACAAACACTATTATT+CGG - Chr3:48603229-48603248 MsG0380013996.01.T01:intron 20.0%
!! AAATATCAAAATACTAAGAG+AGG - Chr3:48602886-48602905 MsG0380013996.01.T01:intron 20.0%
!! AAATGAAAATCAAATAACCT+TGG + Chr3:48605617-48605636 None:intergenic 20.0%
!! AACAATTCAAACGAAAATTT+GGG - Chr3:48604918-48604937 MsG0380013996.01.T01:intron 20.0%
!! AAGAAAGATAAATCCATTAA+TGG - Chr3:48604515-48604534 MsG0380013996.01.T01:intron 20.0%
!! AAGTACATTCTATTACAATT+GGG - Chr3:48603578-48603597 MsG0380013996.01.T01:intron 20.0%
!! AATGAAAATCAAATAACCTT+GGG + Chr3:48605616-48605635 None:intergenic 20.0%
!! ACTAAGAATTAATAAGAATC+CGG - Chr3:48606874-48606893 MsG0380013996.01.T01:intron 20.0%
!! AGAAAATAGATCAATTTGAT+AGG - Chr3:48604468-48604487 MsG0380013996.01.T01:intron 20.0%
!! AGACAATTCATTATCATTAT+AGG + Chr3:48604123-48604142 None:intergenic 20.0%
!! AGGAAATTAAAGAAAAGATA+CGG + Chr3:48603203-48603222 None:intergenic 20.0%
!! AGTTGGGTTTAATTAATAAA+AGG + Chr3:48604878-48604897 None:intergenic 20.0%
!! ATATCTACTATTATAGATAG+TGG + Chr3:48606497-48606516 None:intergenic 20.0%
!! ATTTAGTATTCCATATACTA+TGG + Chr3:48606571-48606590 None:intergenic 20.0%
!! GAAAATAGATCAATTTGATA+GGG - Chr3:48604469-48604488 MsG0380013996.01.T01:intron 20.0%
!! GAAAATCATGGAAAAAAAAA+TGG - Chr3:48604073-48604092 MsG0380013996.01.T01:intron 20.0%
!! TAAGTACATTCTATTACAAT+TGG - Chr3:48603577-48603596 MsG0380013996.01.T01:intron 20.0%
!! TATCATTAGACAATCTAATT+CGG + Chr3:48604274-48604293 None:intergenic 20.0%
!! TATGAATGTGAAAAATATAC+CGG + Chr3:48606896-48606915 None:intergenic 20.0%
!! TGATATTAGTAGATAGTAAA+TGG + Chr3:48602680-48602699 None:intergenic 20.0%
!! TTGGATTGATATTATTAGTT+TGG - Chr3:48603507-48603526 MsG0380013996.01.T01:intron 20.0%
!!! AAGAAAAGAGAATTTTTTTG+AGG + Chr3:48606048-48606067 None:intergenic 20.0%
!!! ATCTTTTTGATGAAATGTAT+TGG - Chr3:48603488-48603507 MsG0380013996.01.T01:intron 20.0%
!!! ATTTTTACTTCGTCAAATAA+TGG + Chr3:48605279-48605298 None:intergenic 20.0%
!!! GTTAGAAATCCTTTATTTTT+TGG - Chr3:48604587-48604606 MsG0380013996.01.T01:intron 20.0%
!!! TAAGTTTCATTTTGAATTGA+TGG + Chr3:48604371-48604390 None:intergenic 20.0%
!!! TATCTTTTTTTTATTGCGAT+TGG + Chr3:48605167-48605186 None:intergenic 20.0%
!!! TTCATTTTAAGAACGAAATA+AGG + Chr3:48601881-48601900 None:intergenic 20.0%
!!! TTTTAACGTATAATTAGATG+TGG - Chr3:48604782-48604801 MsG0380013996.01.T01:intron 20.0%
!!! TTTTCTTTACACAAAGAAAA+AGG + Chr3:48606276-48606295 None:intergenic 20.0%
! AAAAAAATAAATCAGAGCAC+AGG - Chr3:48606241-48606260 MsG0380013996.01.T01:intron 25.0%
! AAAAAATAAATCAGAGCACA+GGG - Chr3:48606242-48606261 MsG0380013996.01.T01:intron 25.0%
! AAAAGGGAATAAGAATGAAA+AGG + Chr3:48601468-48601487 None:intergenic 25.0%
! AACCAGTAATATTACAAGTA+TGG + Chr3:48606597-48606616 None:intergenic 25.0%
! AATAGGGAATAAGAATGAAA+AGG - Chr3:48601496-48601515 MsG0380013996.01.T01:intron 25.0%
! AATCGATGTTGAAATAGATT+CGG - Chr3:48603739-48603758 MsG0380013996.01.T01:intron 25.0%
! AATCTTAGTAAGATTGAACT+TGG + Chr3:48603389-48603408 None:intergenic 25.0%
! AATGTAATAGAAACAATGAC+AGG - Chr3:48602187-48602206 MsG0380013996.01.T01:intron 25.0%
! ACGTCAAATAAAATCCATAA+TGG - Chr3:48605960-48605979 MsG0380013996.01.T01:intron 25.0%
! AGAAACTAAACAAGAACAAA+CGG - Chr3:48603769-48603788 MsG0380013996.01.T01:intron 25.0%
! AGATAATAATATCTTCGCAT+TGG - Chr3:48603867-48603886 MsG0380013996.01.T01:intron 25.0%
! AGTTGAACAATCAAAATAGA+TGG + Chr3:48601150-48601169 None:intergenic 25.0%
! ATAAAAAGCGAAAGAATTGT+AGG + Chr3:48605520-48605539 None:intergenic 25.0%
! ATAATACGATCGTGAATAAA+AGG + Chr3:48605328-48605347 None:intergenic 25.0%
! ATAGTTACTTATTGCAGTAA+AGG + Chr3:48605554-48605573 None:intergenic 25.0%
! ATATAAGAACTTTATTCCTG+TGG - Chr3:48604235-48604254 MsG0380013996.01.T01:intron 25.0%
! ATATATGATCCTTTCTTGAA+TGG - Chr3:48604320-48604339 MsG0380013996.01.T01:intron 25.0%
! ATCTTAGTAAGATTGAACTT+GGG + Chr3:48603388-48603407 None:intergenic 25.0%
! ATGGAGAATAGCTAATAATT+AGG - Chr3:48604694-48604713 MsG0380013996.01.T01:intron 25.0%
! ATGTAATAGAAACAATGACA+GGG - Chr3:48602188-48602207 MsG0380013996.01.T01:intron 25.0%
! ATTACAATTGGGAAATTATG+TGG - Chr3:48603589-48603608 MsG0380013996.01.T01:intron 25.0%
! CAACAATTCAAACGAAAATT+TGG - Chr3:48604917-48604936 MsG0380013996.01.T01:intron 25.0%
! CATAAACTAAACCAACAATT+AGG + Chr3:48607237-48607256 None:intergenic 25.0%
! CGAAATTTACGTATTGAATT+TGG + Chr3:48603308-48603327 None:intergenic 25.0%
! CTAGAGCAAACATATAATAA+CGG + Chr3:48607108-48607127 None:intergenic 25.0%
! CTCCTATGAAAAAAAAACAT+TGG + Chr3:48605846-48605865 None:intergenic 25.0%
! CTTATTAAGCTAAAATCTCT+GGG - Chr3:48601613-48601632 MsG0380013996.01.T01:intron 25.0%
! CTTTGTGTAAAGAAAAAAGA+TGG - Chr3:48606280-48606299 MsG0380013996.01.T01:intron 25.0%
! GAAAATGTTTAGTAGAACAA+AGG - Chr3:48602088-48602107 MsG0380013996.01.T01:intron 25.0%
! GATATTACTAAGTAAATGGT+TGG + Chr3:48602606-48602625 None:intergenic 25.0%
! GATGAAAGCTTCTATAAATA+CGG + Chr3:48607203-48607222 None:intergenic 25.0%
! GATTACTATTATTTGGATTC+TGG - Chr3:48603254-48603273 MsG0380013996.01.T01:intron 25.0%
! TACTTAATCTATTCAATGCT+AGG - Chr3:48606006-48606025 MsG0380013996.01.T01:intron 25.0%
! TAGTATAGGTAGCAATATTA+GGG + Chr3:48606450-48606469 None:intergenic 25.0%
! TCAATATCTCAAATCCATTA+TGG + Chr3:48605977-48605996 None:intergenic 25.0%
! TCAGTATAAAAATATGGAAG+CGG + Chr3:48603671-48603690 None:intergenic 25.0%
! TCTATAAATCTGAGTAGTAT+AGG + Chr3:48606464-48606483 None:intergenic 25.0%
! TCTTATTAAGCTAAAATCTC+TGG - Chr3:48601612-48601631 MsG0380013996.01.T01:intron 25.0%
! TTACAATTGGGAAATTATGT+GGG - Chr3:48603590-48603609 MsG0380013996.01.T01:intron 25.0%
! TTAGATTGTCTAATGATAAG+AGG - Chr3:48604276-48604295 MsG0380013996.01.T01:intron 25.0%
! TTATTAAGCTAAAATCTCTG+GGG - Chr3:48601614-48601633 MsG0380013996.01.T01:intron 25.0%
! TTCAGAAAACTAGATAAATC+AGG + Chr3:48604056-48604075 None:intergenic 25.0%
! TTGAATTTACCTATGAAATG+AGG + Chr3:48602486-48602505 None:intergenic 25.0%
! TTTCATAGGTAAATTCAAAG+TGG - Chr3:48602488-48602507 MsG0380013996.01.T01:intron 25.0%
! TTTCATATATGTCAAAGTGA+TGG - Chr3:48604002-48604021 MsG0380013996.01.T01:intron 25.0%
! TTTCCTTCGAATTATGTAAT+CGG - Chr3:48602264-48602283 MsG0380013996.01.T01:intron 25.0%
!! AAATATGTATCAAAAGCACA+AGG - Chr3:48605780-48605799 MsG0380013996.01.T01:intron 25.0%
!! AATATGTATCAAAAGCACAA+GGG - Chr3:48605781-48605800 MsG0380013996.01.T01:intron 25.0%
!! ATCGATCTTTATTCCTATTT+TGG - Chr3:48606973-48606992 MsG0380013996.01.T01:intron 25.0%
!! ATGGATTTGAGATATTGATA+AGG - Chr3:48605979-48605998 MsG0380013996.01.T01:intron 25.0%
!! CAAATTTTCGTTTGAATTGT+TGG + Chr3:48604919-48604938 None:intergenic 25.0%
!! CTAAAAATTTTTATTGGACC+TGG + Chr3:48604944-48604963 None:intergenic 25.0%
!! GGTATATTTTTCACATTCAT+AGG - Chr3:48606895-48606914 MsG0380013996.01.T01:intron 25.0%
!! TCATAACTAGAAAGTTTTTC+TGG + Chr3:48607040-48607059 None:intergenic 25.0%
!! TCTATTTTCTGTTCAAATTC+TGG + Chr3:48604458-48604477 None:intergenic 25.0%
!! TGGCTGAATTTAGTATTTTA+AGG + Chr3:48602962-48602981 None:intergenic 25.0%
!! TTCTTAACAAGTAGTTTTCT+TGG - Chr3:48603449-48603468 MsG0380013996.01.T01:intron 25.0%
!! TTTTGGATAAGAAATCAACT+AGG - Chr3:48601788-48601807 MsG0380013996.01.T01:intron 25.0%
!!! AAACTTTCTAGTTATGAATC+TGG - Chr3:48607043-48607062 MsG0380013996.01.T01:intron 25.0%
!!! AACTTTCTAGTTATGAATCT+GGG - Chr3:48607044-48607063 MsG0380013996.01.T01:intron 25.0%
!!! AGAGATTTGATTTGAGAATT+GGG + Chr3:48601538-48601557 None:intergenic 25.0%
!!! AGTGTTTGTTGTTTTTGTAT+AGG + Chr3:48603223-48603242 None:intergenic 25.0%
!!! ATCTAGTTTTCTGAAAATCA+TGG - Chr3:48604061-48604080 MsG0380013996.01.T01:intron 25.0%
!!! ATTTTAGCTCCAATTAGAAA+AGG - Chr3:48607013-48607032 MsG0380013996.01.T01:intron 25.0%
!!! CAACTCTTTTAATTACATGA+TGG + Chr3:48605870-48605889 None:intergenic 25.0%
!!! GATGGGTACTTTTTTTATTT+AGG + Chr3:48605645-48605664 None:intergenic 25.0%
!!! TATTCATTTGTTTTTACCCA+AGG - Chr3:48605597-48605616 MsG0380013996.01.T01:intron 25.0%
!!! TCCAAAGTCTTATCTTTTTT+CGG + Chr3:48603835-48603854 None:intergenic 25.0%
!!! TCGTTTTTTATATATCGCAA+TGG + Chr3:48603940-48603959 None:intergenic 25.0%
!!! TTGTTCTCTTATTTTATTCC+TGG + Chr3:48605920-48605939 None:intergenic 25.0%
!!! TTTTAGCTCCAATTAGAAAA+GGG - Chr3:48607014-48607033 MsG0380013996.01.T01:intron 25.0%
AAAATCCTTAATCCATTCGT+TGG - Chr3:48604727-48604746 MsG0380013996.01.T01:intron 30.0%
AAGGAAAAGGATGAAATCAA+TGG - Chr3:48603713-48603732 MsG0380013996.01.T01:intron 30.0%
AATCCATTGATCTGATAGAT+GGG + Chr3:48605662-48605681 None:intergenic 30.0%
AATCTTAGAATACGAAGAGA+AGG - Chr3:48603694-48603713 MsG0380013996.01.T01:intron 30.0%
AATGCAAAAAAAATGCACGT+TGG - Chr3:48606342-48606361 MsG0380013996.01.T01:intron 30.0%
ACGAGTTATAAAGGAAACTT+CGG + Chr3:48602433-48602452 None:intergenic 30.0%
AGAAAAACATAGTAATGACG+AGG + Chr3:48601993-48602012 None:intergenic 30.0%
AGAAAACTAGATAAATCAGG+TGG + Chr3:48604053-48604072 None:intergenic 30.0%
AGAAGTTTCACGAGTTATAA+AGG + Chr3:48602442-48602461 None:intergenic 30.0%
AGCTATTCTCCATTATGTTA+TGG + Chr3:48604687-48604706 None:intergenic 30.0%
AGTAAGATGTTAAGTAGAGT+AGG + Chr3:48602224-48602243 None:intergenic 30.0%
ATAAGAAATCAACTAGGATC+GGG - Chr3:48601794-48601813 MsG0380013996.01.T01:intron 30.0%
ATGAAAAAAATCTCCCAAGT+AGG - Chr3:48602288-48602307 MsG0380013996.01.T01:intron 30.0%
ATGCAAAAAAAATGCACGTT+GGG - Chr3:48606343-48606362 MsG0380013996.01.T01:intron 30.0%
ATGTTAAGTAGAGTAGGTAA+CGG + Chr3:48602218-48602237 None:intergenic 30.0%
ATTCCGATTACATAATTCGA+AGG + Chr3:48602270-48602289 None:intergenic 30.0%
ATTGAACTTGGGAAAAGAAA+GGG + Chr3:48603377-48603396 None:intergenic 30.0%
CACAATTATTATAGAGAGAG+AGG - Chr3:48601579-48601598 MsG0380013996.01.T01:intron 30.0%
CTAAACCAACAATTAGGATA+AGG + Chr3:48607231-48607250 None:intergenic 30.0%
CTATTCTCCATTATGTTATG+GGG + Chr3:48604685-48604704 None:intergenic 30.0%
CTCCATACTTGTAATATTAC+TGG - Chr3:48606592-48606611 MsG0380013996.01.T01:intron 30.0%
CTCTTTCTTCTACACATTTA+TGG - Chr3:48604656-48604675 MsG0380013996.01.T01:intron 30.0%
CTGGATCAACTAAAGTTAAA+TGG + Chr3:48606148-48606167 None:intergenic 30.0%
GAAATCAGAAATGCCAAAAT+AGG + Chr3:48606989-48607008 None:intergenic 30.0%
GATAAGAAATCAACTAGGAT+CGG - Chr3:48601793-48601812 MsG0380013996.01.T01:intron 30.0%
GCTATTCTCCATTATGTTAT+GGG + Chr3:48604686-48604705 None:intergenic 30.0%
GTAGTATAGGTAGCAATATT+AGG + Chr3:48606451-48606470 None:intergenic 30.0%
TAATCCATTGATCTGATAGA+TGG + Chr3:48605663-48605682 None:intergenic 30.0%
TATGTACTAGTACTAGCAAT+AGG + Chr3:48602067-48602086 None:intergenic 30.0%
TCCGAAAAAAGATAAGACTT+TGG - Chr3:48603831-48603850 MsG0380013996.01.T01:intron 30.0%
TCGATTATCAAAGATGGAAT+AGG - Chr3:48603914-48603933 MsG0380013996.01.T01:intron 30.0%
TGAATTTGGATTCTTGTATC+CGG + Chr3:48603294-48603313 None:intergenic 30.0%
TGTAATAGAAACAATGACAG+GGG - Chr3:48602189-48602208 MsG0380013996.01.T01:intron 30.0%
TGTTGAAATAGATTCGGAAA+CGG - Chr3:48603745-48603764 MsG0380013996.01.T01:intron 30.0%
TTCCTATCTTAGGAACTTTA+AGG - Chr3:48606066-48606085 MsG0380013996.01.T01:intron 30.0%
TTGTTCCATCTAATTGTTCT+AGG - Chr3:48604553-48604572 MsG0380013996.01.T01:intron 30.0%
! AAGATTTTCTTCGTCTTCAA+TGG + Chr3:48603797-48603816 None:intergenic 30.0%
! ATTTTGTTAATTCTTCGGCT+TGG - Chr3:48601927-48601946 MsG0380013996.01.T01:intron 30.0%
! CATTTAACTTTAGTTGATCC+AGG - Chr3:48606146-48606165 MsG0380013996.01.T01:intron 30.0%
! CCTTCTTCTTTGAAAAACTT+TGG - Chr3:48606195-48606214 MsG0380013996.01.T01:intron 30.0%
! CGTCATTACTATGTTTTTCT+CGG - Chr3:48601993-48602012 MsG0380013996.01.T01:intron 30.0%
! CTCTTTTCGATTATCAAAGA+TGG - Chr3:48603908-48603927 MsG0380013996.01.T01:intron 30.0%
! GAAAAAGTTTTTCCAACGAA+TGG + Chr3:48604742-48604761 None:intergenic 30.0%
! GTTAAGCTTTTTAATCATCC+TGG + Chr3:48601446-48601465 None:intergenic 30.0%
! TAACAAGTAGTTTTCTTGGT+TGG - Chr3:48603453-48603472 MsG0380013996.01.T01:intron 30.0%
! TAATGAGTTGAGAAAAGGAA+TGG + Chr3:48602399-48602418 None:intergenic 30.0%
! TACTATGTTTTTCTCGGTAA+TGG - Chr3:48601999-48602018 MsG0380013996.01.T01:intron 30.0%
! TCCCTATTGCTATTGAAAAA+GGG + Chr3:48601484-48601503 None:intergenic 30.0%
! TTCCCTATTGCTATTGAAAA+AGG + Chr3:48601485-48601504 None:intergenic 30.0%
! TTCTCTTTTCTTCCTATCTT+AGG - Chr3:48606056-48606075 MsG0380013996.01.T01:intron 30.0%
! TTTTGTTAATTCTTCGGCTT+GGG - Chr3:48601928-48601947 MsG0380013996.01.T01:intron 30.0%
! TTTTTCCATTCATTCCTTTC+TGG - Chr3:48604990-48605009 MsG0380013996.01.T01:intron 30.0%
!! AATGAGTTTTGATGTATTGG+GGG - Chr3:48607174-48607193 MsG0380013996.01.T01:intron 30.0%
!! AGTTTTCTTGGTTGGTTAAT+TGG - Chr3:48603461-48603480 MsG0380013996.01.T01:intron 30.0%
!! ATTGGTAATGAGTTGAGAAA+AGG + Chr3:48602404-48602423 None:intergenic 30.0%
!! ATTTTGGCATTTCTGATTTC+TGG - Chr3:48606989-48607008 MsG0380013996.01.T01:intron 30.0%
!! CAATGAGTTTTGATGTATTG+GGG - Chr3:48607173-48607192 MsG0380013996.01.T01:intron 30.0%
!! CCAAAGTTTTTCAAAGAAGA+AGG + Chr3:48606198-48606217 None:intergenic 30.0%
!! GAGAGATTTGATTTGAGAAT+TGG + Chr3:48601539-48601558 None:intergenic 30.0%
!! GAGATTTGATTTGAGAATTG+GGG + Chr3:48601537-48601556 None:intergenic 30.0%
!! GCAATGAGTTTTGATGTATT+GGG - Chr3:48607172-48607191 MsG0380013996.01.T01:intron 30.0%
!! GCTTTTTGTTTCCCTATAAT+TGG - Chr3:48604836-48604855 MsG0380013996.01.T01:intron 30.0%
!! TTGTTGGTTTAGTTTATGCA+TGG - Chr3:48607239-48607258 MsG0380013996.01.T01:intron 30.0%
!!! AACGTGCATTTTTTTTGCAT+TGG + Chr3:48606343-48606362 None:intergenic 30.0%
!!! ACGTGCATTTTTTTTGCATT+GGG + Chr3:48606342-48606361 None:intergenic 30.0%
!!! CGCCAATGTTTTTTTTTCAT+AGG - Chr3:48605841-48605860 MsG0380013996.01.T01:intron 30.0%
!!! TCCCTTTTTCAATAGCAATA+GGG - Chr3:48601480-48601499 MsG0380013996.01.T01:intron 30.0%
!!! TTCCCTTTTTCAATAGCAAT+AGG - Chr3:48601479-48601498 MsG0380013996.01.T01:intron 30.0%
!!! TTTTTCCAACGAATGGATTA+AGG + Chr3:48604735-48604754 None:intergenic 30.0%
AAACAGTCTTTCTTTACCCA+TGG - Chr3:48607149-48607168 MsG0380013996.01.T01:intron 35.0%
AACAGTCTTTCTTTACCCAT+GGG - Chr3:48607150-48607169 MsG0380013996.01.T01:intron 35.0%
ACTAAATTCAGCCATTGTGA+TGG - Chr3:48602968-48602987 MsG0380013996.01.T01:intron 35.0%
AGAAAAGATACGGTAGAGTT+AGG + Chr3:48603193-48603212 None:intergenic 35.0%
AGAATACGAAGAGAAGGAAA+AGG - Chr3:48603700-48603719 MsG0380013996.01.T01:intron 35.0%
AGCTTAGATGCTCCAATTAT+AGG + Chr3:48604851-48604870 None:intergenic 35.0%
ATAATAGAGTCCCATCACAA+TGG + Chr3:48602982-48603001 None:intergenic 35.0%
CAACAAACACTATTATTCGG+CGG - Chr3:48603232-48603251 MsG0380013996.01.T01:intron 35.0%
CACCTTAAAGTTCCTAAGAT+AGG + Chr3:48606071-48606090 None:intergenic 35.0%
CGAATAAGGAAGAGATAAGA+AGG + Chr3:48603032-48603051 None:intergenic 35.0%
CGGAACAAATGAATTCAGTT+GGG + Chr3:48604894-48604913 None:intergenic 35.0%
CTAAATTCAGCCATTGTGAT+GGG - Chr3:48602969-48602988 MsG0380013996.01.T01:intron 35.0%
CTAATCAAAGCCAAATGCAA+AGG + Chr3:48603152-48603171 None:intergenic 35.0%
CTCGTGAAACTTCTTCATAA+TGG - Chr3:48602448-48602467 MsG0380013996.01.T01:intron 35.0%
GATTGAACTTGGGAAAAGAA+AGG + Chr3:48603378-48603397 None:intergenic 35.0%
GCTTAGATGCTCCAATTATA+GGG + Chr3:48604850-48604869 None:intergenic 35.0%
GTAGCAATATTAGGGCTATA+CGG + Chr3:48606442-48606461 None:intergenic 35.0%
GTTAGGACAGTTATTGTATG+AGG + Chr3:48603176-48603195 None:intergenic 35.0%
GTTGTCCTAGAACAATTAGA+TGG + Chr3:48604561-48604580 None:intergenic 35.0%
TACGATCGTGAATAAAAGGA+TGG + Chr3:48605324-48605343 None:intergenic 35.0%
TATAATAATTGTGCGTTCCG+AGG + Chr3:48601572-48601591 None:intergenic 35.0%
TATTAGGGTTGCTAACTCAA+TGG + Chr3:48605117-48605136 None:intergenic 35.0%
TCCAAAATCAAAAGAGCGAT+TGG + Chr3:48604614-48604633 None:intergenic 35.0%
TCGGAACAAATGAATTCAGT+TGG + Chr3:48604895-48604914 None:intergenic 35.0%
TTCGTCCTTATCCTAATTGT+TGG - Chr3:48607223-48607242 MsG0380013996.01.T01:intron 35.0%
TTCTGACTACATTCTCCATA+GGG - Chr3:48603006-48603025 MsG0380013996.01.T01:intron 35.0%
TTGAACTTGGGAAAAGAAAG+GGG + Chr3:48603376-48603395 None:intergenic 35.0%
TTTACCTATGAAATGAGGCA+TGG + Chr3:48602481-48602500 None:intergenic 35.0%
TTTATTCCTGGAGTAAGACA+TGG + Chr3:48605908-48605927 None:intergenic 35.0%
TTTCTGACTACATTCTCCAT+AGG - Chr3:48603005-48603024 MsG0380013996.01.T01:intron 35.0%
TTTGGATTCTGGATACAAGT+TGG - Chr3:48603265-48603284 MsG0380013996.01.T01:intron 35.0%
! AATTGGTTCATCCATACCAT+CGG + Chr3:48605041-48605060 None:intergenic 35.0%
! ATTGTGATGGGACTCTATTA+TGG - Chr3:48602981-48603000 MsG0380013996.01.T01:intron 35.0%
! CATATTGACTAGTCAATGTC+AGG + Chr3:48601275-48601294 None:intergenic 35.0%
! GCGATTGGTCCAAAAAATAA+AGG + Chr3:48604599-48604618 None:intergenic 35.0%
! TAACTCAATGGTAGAGTACT+CGG + Chr3:48605105-48605124 None:intergenic 35.0%
! TTGGTTTAGTTTATGCATGG+CGG - Chr3:48607242-48607261 MsG0380013996.01.T01:intron 35.0%
! TTTCGTTTGAATTGTTGGCT+CGG + Chr3:48604914-48604933 None:intergenic 35.0%
! TTTGATCTGTTTTACCGAGA+AGG - Chr3:48606402-48606421 MsG0380013996.01.T01:intron 35.0%
! TTTGTTAATTCTTCGGCTTG+GGG - Chr3:48601929-48601948 MsG0380013996.01.T01:intron 35.0%
!! GGCAATGAGTTTTGATGTAT+TGG - Chr3:48607171-48607190 MsG0380013996.01.T01:intron 35.0%
!! TATGTTTTTCTCGGTAATGG+TGG - Chr3:48602002-48602021 MsG0380013996.01.T01:intron 35.0%
!! TTCGGCGGATTACTATTATT+TGG - Chr3:48603247-48603266 MsG0380013996.01.T01:intron 35.0%
!! TTTTCTGGCCCTTTTCTAAT+TGG + Chr3:48607025-48607044 None:intergenic 35.0%
!!! ACCAATCGCTCTTTTGATTT+TGG - Chr3:48604610-48604629 MsG0380013996.01.T01:intron 35.0%
AAAGCAGCATGTCGTATCAA+TGG + Chr3:48604973-48604992 None:intergenic 40.0%
AAGACAAGGTTCAAGTCTAC+CGG + Chr3:48601096-48601115 None:intergenic 40.0%
AATGCTAGGCAAATGAGTCT+AGG - Chr3:48606020-48606039 MsG0380013996.01.T01:intron 40.0%
AATTAGATGGAACAAGCGAG+CGG + Chr3:48604548-48604567 None:intergenic 40.0%
ACATCAAAACTCATTGCCCA+TGG + Chr3:48607169-48607188 None:intergenic 40.0%
AGAAATCCATGTCTTACTCC+AGG - Chr3:48605899-48605918 MsG0380013996.01.T01:intron 40.0%
AGAGAACAATAGCCTGACAA+AGG - Chr3:48605931-48605950 MsG0380013996.01.T01:intron 40.0%
AGCAACAACCGGGTTTATTA+CGG - Chr3:48603091-48603110 MsG0380013996.01.T01:intron 40.0%
AGGAAACTTCGGTCTGATAT+TGG + Chr3:48602422-48602441 None:intergenic 40.0%
AGGATTGAACTACGACCAAT+CGG - Chr3:48602308-48602327 MsG0380013996.01.T01:intron 40.0%
ATGACCTGATCAATTCGATC+AGG - Chr3:48601118-48601137 MsG0380013996.01.T01:CDS 40.0%
ATGCTAGGCAAATGAGTCTA+GGG - Chr3:48606021-48606040 MsG0380013996.01.T01:intron 40.0%
ATGGCTACCCCATAACATAA+TGG - Chr3:48604675-48604694 MsG0380013996.01.T01:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + Chr3:48601125-48601144 None:intergenic 40.0%
CATCAAAACTCATTGCCCAT+GGG + Chr3:48607168-48607187 None:intergenic 40.0%
CCAATATTGCAGAACAGGAA+TGG - Chr3:48602149-48602168 MsG0380013996.01.T01:intron 40.0%
CCATTCCTGTTCTGCAATAT+TGG + Chr3:48602152-48602171 None:intergenic 40.0%
CGAAAAGGTCCATTCAAGAA+AGG + Chr3:48604332-48604351 None:intergenic 40.0%
CTATTATGCGCCTTTGCATT+TGG - Chr3:48603139-48603158 MsG0380013996.01.T01:intron 40.0%
CTGATCCAGAAAGGAATGAA+TGG + Chr3:48604998-48605017 None:intergenic 40.0%
GTACCCATCTATCAGATCAA+TGG - Chr3:48605656-48605675 MsG0380013996.01.T01:intron 40.0%
GTAGAGTTTAACCCCAAGTT+CGG + Chr3:48601375-48601394 None:intergenic 40.0%
GTCGTAGTTCAATCCTACTT+GGG + Chr3:48602304-48602323 None:intergenic 40.0%
TAGAGTTTAACCCCAAGTTC+GGG + Chr3:48601374-48601393 None:intergenic 40.0%
TCAATACCTAGGTGTAGGTT+GGG + Chr3:48602120-48602139 None:intergenic 40.0%
TCATGCCTTTACTTCGTTCA+TGG - Chr3:48601303-48601322 MsG0380013996.01.T01:CDS 40.0%
TCGAAAAGAGTCGTTACAAG+AGG + Chr3:48603898-48603917 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + Chr3:48601311-48601330 None:intergenic 40.0%
TCGTTCATGGTTCGATATTC+TGG - Chr3:48601316-48601335 MsG0380013996.01.T01:CDS 40.0%
TGACGTCTAAATCCTTTGTC+AGG + Chr3:48605946-48605965 None:intergenic 40.0%
TGATCAGGTCATGTAAGACA+AGG + Chr3:48601110-48601129 None:intergenic 40.0%
TTCAAACGAAAATTTGGGCC+AGG - Chr3:48604923-48604942 MsG0380013996.01.T01:intron 40.0%
TTCCATCCCTAGCTATTCAA+GGG + Chr3:48601211-48601230 None:intergenic 40.0%
TTCTGCAATATTGGAGACCT+CGG + Chr3:48602143-48602162 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - Chr3:48601211-48601230 MsG0380013996.01.T01:CDS 40.0%
! AAAAGGATTAGTGCTTGCTG+TGG + Chr3:48604764-48604783 None:intergenic 40.0%
! CGGTTTTCAAATACATCCAC+AGG + Chr3:48604254-48604273 None:intergenic 40.0%
! GAAAAGCTTTGTCCACGAAA+AGG + Chr3:48604347-48604366 None:intergenic 40.0%
! TCTGGATACAAGTTGGATTC+CGG - Chr3:48603272-48603291 MsG0380013996.01.T01:intron 40.0%
! TGTTTTACCGAGAAGGTCTA+CGG - Chr3:48606409-48606428 MsG0380013996.01.T01:intron 40.0%
! TTAGTTTATGCATGGCGGAA+GGG - Chr3:48607247-48607266 MsG0380013996.01.T01:intron 40.0%
! TTCTTGAATGGACCTTTTCG+TGG - Chr3:48604332-48604351 MsG0380013996.01.T01:intron 40.0%
! TTTAGTTTATGCATGGCGGA+AGG - Chr3:48607246-48607265 MsG0380013996.01.T01:intron 40.0%
!! CTCTTTGATTGATAGTGCGT+TGG + Chr3:48605713-48605732 None:intergenic 40.0%
AAGCTGTCCCGTAATAAACC+CGG + Chr3:48603102-48603121 None:intergenic 45.0%
ACGGAAATAGCAGCAACAAC+CGG - Chr3:48603080-48603099 MsG0380013996.01.T01:intron 45.0%
ACTGAGCTACTGAGGAACAA+CGG - Chr3:48602352-48602371 MsG0380013996.01.T01:intron 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + Chr3:48601207-48601226 None:intergenic 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - Chr3:48601206-48601225 MsG0380013996.01.T01:CDS 45.0%
ATCTCTTCCTTATTCGAGCC+CGG - Chr3:48603036-48603055 MsG0380013996.01.T01:intron 45.0%
ATTCCTTTCTGGATCAGTCG+TGG - Chr3:48605001-48605020 MsG0380013996.01.T01:intron 45.0%
CAATACCTAGGTGTAGGTTG+GGG + Chr3:48602119-48602138 None:intergenic 45.0%
CGGTGTTCTGCCTAAATAGT+GGG + Chr3:48603651-48603670 None:intergenic 45.0%
CGTTCCATGCCTCATTTCAT+AGG - Chr3:48602474-48602493 MsG0380013996.01.T01:intron 45.0%
CTTCCATCCCTAGCTATTCA+AGG + Chr3:48601212-48601231 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - Chr3:48601210-48601229 MsG0380013996.01.T01:CDS 45.0%
CTTGGGGTTAAACTCTACTG+CGG - Chr3:48601377-48601396 MsG0380013996.01.T01:CDS 45.0%
GAACAGATCTAGTGGAGACA+GGG - Chr3:48601668-48601687 MsG0380013996.01.T01:intron 45.0%
GAAGAAGGTTATCCTGACGT+AGG + Chr3:48606183-48606202 None:intergenic 45.0%
GAAGAGATAAGAAGGCCCTA+TGG + Chr3:48603024-48603043 None:intergenic 45.0%
GAGCGGAGATAGTCCATTAA+TGG + Chr3:48604531-48604550 None:intergenic 45.0%
GCAACAACCGGGTTTATTAC+GGG - Chr3:48603092-48603111 MsG0380013996.01.T01:intron 45.0%
GGAGAGGAAAGGTTTCTTGT+AGG - Chr3:48601635-48601654 MsG0380013996.01.T01:intron 45.0%
GGTCGTAGTTCAATCCTACT+TGG + Chr3:48602305-48602324 None:intergenic 45.0%
GGTCTCCAATATTGCAGAAC+AGG - Chr3:48602144-48602163 MsG0380013996.01.T01:intron 45.0%
GTCAATACCTAGGTGTAGGT+TGG + Chr3:48602121-48602140 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + Chr3:48601258-48601277 None:intergenic 45.0%
GTCCTAATTCTTGACTGGAG+AGG + Chr3:48601253-48601272 None:intergenic 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - Chr3:48601248-48601267 MsG0380013996.01.T01:CDS 45.0%
GTTCATCCATACCATCGGTA+GGG + Chr3:48605036-48605055 None:intergenic 45.0%
GTTCGATATTCTGGTGTCCT+AGG - Chr3:48601325-48601344 MsG0380013996.01.T01:CDS 45.0%
GTTCTCGTTGCCCACTATTT+AGG - Chr3:48603638-48603657 MsG0380013996.01.T01:intron 45.0%
TACAAACCCTACCGATGGTA+TGG - Chr3:48605027-48605046 MsG0380013996.01.T01:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + Chr3:48601206-48601225 None:intergenic 45.0%
TCTCCACTAGATCTGTTCCT+CGG + Chr3:48601666-48601685 None:intergenic 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + Chr3:48601087-48601106 None:intergenic 45.0%
! AAAAGTCCTTCCCCTTTTGC+CGG + Chr3:48601772-48601791 None:intergenic 45.0%
! AAAATCTCTGGGGAGAGGAA+AGG - Chr3:48601624-48601643 MsG0380013996.01.T01:intron 45.0%
! AAGCTAAAATCTCTGGGGAG+AGG - Chr3:48601619-48601638 MsG0380013996.01.T01:intron 45.0%
! GAATCTGGGATAGAACCGAT+GGG - Chr3:48607058-48607077 MsG0380013996.01.T01:intron 45.0%
! TGAATCTGGGATAGAACCGA+TGG - Chr3:48607057-48607076 MsG0380013996.01.T01:intron 45.0%
!! TGTTGCTGCTATTTCCGTCT+CGG + Chr3:48603078-48603097 None:intergenic 45.0%
!! TTATTAAATTTACATTATTT+CGG + Chr3:48606774-48606793 None:intergenic 5.0%
!!! TTCTATTTTTTTTTTTATTA+GGG + Chr3:48605132-48605151 None:intergenic 5.0%
ACACCAATCCATCCCGAACT+TGG - Chr3:48601359-48601378 MsG0380013996.01.T01:CDS 50.0%
ACCAATCCATCCCGAACTTG+GGG - Chr3:48601361-48601380 MsG0380013996.01.T01:CDS 50.0%
ACTCGAACCGTAGACCTTCT+CGG + Chr3:48606419-48606438 None:intergenic 50.0%
ACTGCGGTGACGATACTGTA+GGG - Chr3:48601393-48601412 MsG0380013996.01.T01:CDS 50.0%
AGACCACGACTGATCCAGAA+AGG + Chr3:48605007-48605026 None:intergenic 50.0%
AGATCTAGTGGAGACAGGGT+GGG - Chr3:48601672-48601691 MsG0380013996.01.T01:intron 50.0%
AGCTGAGGATCCTAACAGAC+CGG - Chr3:48601074-48601093 MsG0380013996.01.T01:CDS 50.0%
AGTATCCCCAACCTACACCT+AGG - Chr3:48602111-48602130 MsG0380013996.01.T01:intron 50.0%
ATCTCTCCCACTTCACACCT+CGG - Chr3:48601552-48601571 MsG0380013996.01.T01:intron 50.0%
CACAAGGGCTATAGCTCAGT+TGG - Chr3:48605796-48605815 MsG0380013996.01.T01:intron 50.0%
CACCAATCCATCCCGAACTT+GGG - Chr3:48601360-48601379 MsG0380013996.01.T01:CDS 50.0%
CAGTCATCAATTCTCCCGAG+AGG + Chr3:48602028-48602047 None:intergenic 50.0%
CCCCATCCCTTGAATAGCTA+GGG - Chr3:48601202-48601221 MsG0380013996.01.T01:CDS 50.0%
CCCTAGCTATTCAAGGGATG+GGG + Chr3:48601205-48601224 None:intergenic 50.0%
CCTAGCTATTCAAGGGATGG+GGG + Chr3:48601204-48601223 None:intergenic 50.0%
CGGAAATAGCAGCAACAACC+GGG - Chr3:48603081-48603100 MsG0380013996.01.T01:intron 50.0%
CTCGGTCAATACCTAGGTGT+AGG + Chr3:48602125-48602144 None:intergenic 50.0%
GCGGTGTTCTGCCTAAATAG+TGG + Chr3:48603652-48603671 None:intergenic 50.0%
GGAACAGATCTAGTGGAGAC+AGG - Chr3:48601667-48601686 MsG0380013996.01.T01:intron 50.0%
GGCTAGTGGAAGCAAAGCTA+TGG - Chr3:48601815-48601834 MsG0380013996.01.T01:intron 50.0%
GGTCTTACAAACCCTACCGA+TGG - Chr3:48605022-48605041 MsG0380013996.01.T01:intron 50.0%
GGTTCATCCATACCATCGGT+AGG + Chr3:48605037-48605056 None:intergenic 50.0%
GTTGTTCCTCAGTAGCTCAG+TGG + Chr3:48602353-48602372 None:intergenic 50.0%
GTTTAACCCCAAGTTCGGGA+TGG + Chr3:48601370-48601389 None:intergenic 50.0%
GTTTCTTGTAGGTTCCTCCG+AGG - Chr3:48601646-48601665 MsG0380013996.01.T01:intron 50.0%
TACTGCGGTGACGATACTGT+AGG - Chr3:48601392-48601411 MsG0380013996.01.T01:CDS 50.0%
TCAGTAGCTCAGTGGTAGAG+CGG + Chr3:48602345-48602364 None:intergenic 50.0%
TCTCTTCCTTATTCGAGCCC+GGG - Chr3:48603037-48603056 MsG0380013996.01.T01:intron 50.0%
TTGACTGGAGAGGACACCAA+AGG + Chr3:48601243-48601262 None:intergenic 50.0%
! ATCAACTAGGATCGGGCTAG+TGG - Chr3:48601801-48601820 MsG0380013996.01.T01:intron 50.0%
! GGCAAAAGGGGAAGGACTTT+TGG - Chr3:48601771-48601790 MsG0380013996.01.T01:intron 50.0%
! TCCTGACGTAGGTCTGCTTT+TGG + Chr3:48606172-48606191 None:intergenic 50.0%
! TGTAACCAAGCATCGCCCAT+CGG + Chr3:48607076-48607095 None:intergenic 50.0%
!! CTACACCTAGGTATTGACCG+AGG - Chr3:48602123-48602142 MsG0380013996.01.T01:intron 50.0%
ACCCCAAGTTCGGGATGGAT+TGG + Chr3:48601365-48601384 None:intergenic 55.0%
ATACTGTAGGGGAGGTCCTG+CGG - Chr3:48601405-48601424 MsG0380013996.01.T01:CDS 55.0%
ATTCAAGGGATGGGGGACAG+AGG + Chr3:48601197-48601216 None:intergenic 55.0%
CAGATCTAGTGGAGACAGGG+TGG - Chr3:48601671-48601690 MsG0380013996.01.T01:intron 55.0%
CATTGGCGCGTGTGTAAACG+AGG + Chr3:48605829-48605848 None:intergenic 55.0%
CCACTAGATCTGTTCCTCGG+AGG + Chr3:48601663-48601682 None:intergenic 55.0%
CCATAACCCGGGCTCGAATA+AGG + Chr3:48603046-48603065 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - Chr3:48601201-48601220 MsG0380013996.01.T01:CDS 55.0%
CCTCCGAGGAACAGATCTAG+TGG - Chr3:48601660-48601679 MsG0380013996.01.T01:intron 55.0%
CCTTATTCGAGCCCGGGTTA+TGG - Chr3:48603043-48603062 MsG0380013996.01.T01:intron 55.0%
CTGCGGTGACGATACTGTAG+GGG - Chr3:48601394-48601413 MsG0380013996.01.T01:CDS 55.0%
GATCTAGTGGAGACAGGGTG+GGG - Chr3:48601673-48601692 MsG0380013996.01.T01:intron 55.0%
GCCAAAAGCAGACCTACGTC+AGG - Chr3:48606168-48606187 MsG0380013996.01.T01:intron 55.0%
GCTCAGAGGATTAGAGCACG+TGG - Chr3:48601701-48601720 MsG0380013996.01.T01:intron 55.0%
GCTCTACCACTGAGCTACTG+AGG - Chr3:48602344-48602363 MsG0380013996.01.T01:intron 55.0%
GGAGACCTCGGTCAATACCT+AGG + Chr3:48602131-48602150 None:intergenic 55.0%
GGTCCTGCGGGAAAATAGCT+CGG - Chr3:48601418-48601437 MsG0380013996.01.T01:CDS 55.0%
TAGAACCGATGGGCGATGCT+TGG - Chr3:48607068-48607087 MsG0380013996.01.T01:intron 55.0%
TAGCTCAGTGGTAGAGCGGT+CGG + Chr3:48602341-48602360 None:intergenic 55.0%
TATGGACGAAGGGACCGAGA+CGG - Chr3:48603061-48603080 MsG0380013996.01.T01:intron 55.0%
TGCGTTCCGAGGTGTGAAGT+GGG + Chr3:48601561-48601580 None:intergenic 55.0%
TGGTGTGTTCCTCTACGCCT+AGG + Chr3:48601345-48601364 None:intergenic 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - Chr3:48601333-48601352 MsG0380013996.01.T01:CDS 55.0%
! TCTCGGTAATGGTGGCCTCT+CGG - Chr3:48602010-48602029 MsG0380013996.01.T01:intron 55.0%
!! ACGTAGGTCTGCTTTTGGCC+TGG + Chr3:48606167-48606186 None:intergenic 55.0%
!! CTTCCCCTTTTGCCGGTTGT+GGG + Chr3:48601765-48601784 None:intergenic 55.0%
!! GGCGGAAGGGAGCATTAGAA+TGG - Chr3:48607260-48607279 MsG0380013996.01.T01:CDS 55.0%
AATCCCTCCTCGCCCACAAC+CGG - Chr3:48601750-48601769 MsG0380013996.01.T01:intron 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - Chr3:48601217-48601236 MsG0380013996.01.T01:CDS 60.0%
AGGGATGGGGGACAGAGGTT+TGG + Chr3:48601192-48601211 None:intergenic 60.0%
CCACAACCGGCAAAAGGGGA+AGG - Chr3:48601763-48601782 MsG0380013996.01.T01:intron 60.0%
CGGTCCCTTCGTCCATAACC+CGG + Chr3:48603058-48603077 None:intergenic 60.0%
CGGTGACGATACTGTAGGGG+AGG - Chr3:48601397-48601416 MsG0380013996.01.T01:CDS 60.0%
CTCGCCCACAACCGGCAAAA+GGG - Chr3:48601758-48601777 MsG0380013996.01.T01:intron 60.0%
GAGCACGTGGCTACGAACCA+CGG - Chr3:48601714-48601733 MsG0380013996.01.T01:intron 60.0%
GAGCCCGGGTTATGGACGAA+GGG - Chr3:48603051-48603070 MsG0380013996.01.T01:intron 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - Chr3:48601224-48601243 MsG0380013996.01.T01:CDS 60.0%
GCGGTCGGCTGTTAACCGAT+TGG + Chr3:48602326-48602345 None:intergenic 60.0%
GGTCCCTTCGTCCATAACCC+GGG + Chr3:48603057-48603076 None:intergenic 60.0%
GTGCGTTCCGAGGTGTGAAG+TGG + Chr3:48601562-48601581 None:intergenic 60.0%
GTGGCTACGAACCACGGTGT+CGG - Chr3:48601720-48601739 MsG0380013996.01.T01:intron 60.0%
TACTGTAGGGGAGGTCCTGC+GGG - Chr3:48601406-48601425 MsG0380013996.01.T01:CDS 60.0%
TCGCCCACAACCGGCAAAAG+GGG - Chr3:48601759-48601778 MsG0380013996.01.T01:intron 60.0%
TGGCTACGAACCACGGTGTC+GGG - Chr3:48601721-48601740 MsG0380013996.01.T01:intron 60.0%
! CTCGGTAATGGTGGCCTCTC+GGG - Chr3:48602011-48602030 MsG0380013996.01.T01:intron 60.0%
!! CCTTCCCCTTTTGCCGGTTG+TGG + Chr3:48601766-48601785 None:intergenic 60.0%
AGGGTGGGGCTGTAGCTCAG+AGG - Chr3:48601687-48601706 MsG0380013996.01.T01:intron 65.0%
CCTCGCCCACAACCGGCAAA+AGG - Chr3:48601757-48601776 MsG0380013996.01.T01:intron 65.0%
CGAGCCCGGGTTATGGACGA+AGG - Chr3:48603050-48603069 MsG0380013996.01.T01:intron 65.0%
CGGGAAAATAGCTCGGCGCC+AGG - Chr3:48601425-48601444 MsG0380013996.01.T01:intron 65.0%
GATTCGAACCCCCGACACCG+TGG + Chr3:48601734-48601753 None:intergenic 65.0%
! GCTACGAACCACGGTGTCGG+GGG - Chr3:48601723-48601742 MsG0380013996.01.T01:intron 65.0%
! GGCTACGAACCACGGTGTCG+GGG - Chr3:48601722-48601741 MsG0380013996.01.T01:intron 65.0%
! TTGCCGGTTGTGGGCGAGGA+GGG + Chr3:48601756-48601775 None:intergenic 65.0%
! TTTGCCGGTTGTGGGCGAGG+AGG + Chr3:48601757-48601776 None:intergenic 65.0%
!! CCTTTTGCCGGTTGTGGGCG+AGG + Chr3:48601760-48601779 None:intergenic 65.0%
!! GCGCCGAGCTATTTTCCCGC+AGG + Chr3:48601424-48601443 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48601066 48607288 48601066 ID=MsG0380013996.01;Name=MsG0380013996.01
Chr3 mRNA 48601066 48607288 48601066 ID=MsG0380013996.01.T01;Parent=MsG0380013996.01;Name=MsG0380013996.01.T01;_AED=0.50;_eAED=0.56;_QI=0|0|0|1|0|0|2|0|133
Chr3 exon 48607259 48607288 48607259 ID=MsG0380013996.01.T01:exon:9348;Parent=MsG0380013996.01.T01
Chr3 exon 48601066 48601437 48601066 ID=MsG0380013996.01.T01:exon:9347;Parent=MsG0380013996.01.T01
Chr3 CDS 48607259 48607288 48607259 ID=MsG0380013996.01.T01:cds;Parent=MsG0380013996.01.T01
Chr3 CDS 48601066 48601437 48601066 ID=MsG0380013996.01.T01:cds;Parent=MsG0380013996.01.T01
Gene Sequence

>MsG0380013996.01.T01

ATGTATGCAGCTGAGGATCCTAACAGACCGGAGTACATTTATGTTTTGCTTTATGAATATGATATTTTTTGGACATTTCTAATAATATCGATCTTTATTCCTATTTTGGCATTTCTGATTTCTGGAATTTTAGCTCCAATTAGAAAAGGGCCAGAAAAACTTTCTAGTTATGAATCTGGGATAGAACCGATGGGCGATGCTTGGTTACAATTTCAAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACAGTCTTTCTTTACCCATGGGCAATGAGTTTTGATGTATTGGGGGTATCCGTATTTATAGAAGCTTTCATCTTCGTCCTTATCCTAATTGTTGGTTTAGTTTATGCATGGCGGAAGGGAGCATTAGAATGGTCTTAA

Protein sequence

>MsG0380013996.01.T01

MYAAEDPNRPEYIYVLLYEYDIFWTFLIISIFIPILAFLISGILAPIRKGPEKLSSYESGIEPMGDAWLQFQIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILIVGLVYAWRKGALEWS*