AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031689.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031689.01.T01 MTR_6g029200 98.039 153 3 0 10 162 1 153 3.34e-106 303
MsG0680031689.01.T01 MTR_6g029200 92.810 153 1 1 10 162 1 143 2.57e-96 278
MsG0680031689.01.T01 MTR_7g114240 68.493 146 45 1 17 162 2 146 4.13e-66 201
MsG0680031689.01.T01 MTR_4g057240 61.594 138 52 1 25 162 63 199 4.81e-53 170
MsG0680031689.01.T01 MTR_7g114240 59.259 108 43 1 17 124 2 108 2.80e-38 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031689.01.T01 AT5G18100 73.203 153 40 1 10 162 1 152 4.79e-76 227
MsG0680031689.01.T01 AT5G18100 73.333 135 35 1 10 144 1 134 6.51e-65 197
MsG0680031689.01.T01 AT1G08830 65.517 145 49 1 18 162 3 146 3.30e-61 189
MsG0680031689.01.T01 AT1G08830 65.517 145 49 1 18 162 3 146 3.30e-61 189
MsG0680031689.01.T01 AT2G28190 62.069 145 54 1 18 162 66 209 9.36e-55 174

Find 73 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCATCTGTTTAGGATAAT+TGG 0.165007 6:+24665859 MsG0680031689.01.T01:exon
AACAACAGCTCTCCCGAGTA+TGG 0.331305 6:-24662977 None:intergenic
TGGACTCCAGTCATCTGTTT+AGG 0.338377 6:+24665851 MsG0680031689.01.T01:CDS
GGGAATTATACACATGTAAC+TGG 0.341579 6:+24662070 MsG0680031689.01.T01:intron
TGTTCTATGCGTAAAGGTTT+CGG 0.347351 6:+24666014 MsG0680031689.01.T01:three_prime_UTR
GATTTGGGTAACATTGTTGC+AGG 0.348387 6:+24662446 MsG0680031689.01.T01:CDS
GGGTTGTCTCCAGGTCTTCA+TGG 0.372926 6:+24662103 MsG0680031689.01.T01:CDS
TGTTAAATCGGAGCCCGATT+TGG 0.374181 6:+24664810 MsG0680031689.01.T01:CDS
GAGCGACATGCCGGTGATTT+GGG 0.381125 6:+24662431 MsG0680031689.01.T01:CDS
AATTGTTGAACAGGTATCAT+TGG 0.382126 6:+24665831 MsG0680031689.01.T01:intron
TGAGCGACATGCCGGTGATT+TGG 0.389627 6:+24662430 MsG0680031689.01.T01:CDS
TTGTGAAAGTGACTCAAAAT+TGG 0.400821 6:+24664765 MsG0680031689.01.T01:CDS
TTCACAACAGAATTGTTGTA+TGG 0.403238 6:-24664749 None:intergenic
GCTCCGTGATCCTTCTTTAG+TGG 0.414605 6:-24662395 None:intergenic
TTACCTCTTCCAAGATCATC+AGG 0.417419 6:-24663012 None:intergenic
ACACAGTTTGAGTTTATGTC+AGG 0.429152 6:+24664702 MsG0680031689.01.T01:CDS
GTTTGCTGAAGCTGTTAAAT+CGG 0.439984 6:+24664798 MsG0680031689.01.T01:CDS
ATCGGAGATAACAACGTTAG+AGG 0.441505 6:+24660748 MsG0680031689.01.T01:CDS
GTACTCCGATTTCTCCAAAT+CGG 0.444018 6:-24664824 None:intergenic
ATGGAATGAACTCCACTTAG+TGG 0.448974 6:-24662958 None:intergenic
GGAGCCCGATTTGGAGAAAT+CGG 0.468473 6:+24664819 MsG0680031689.01.T01:CDS
GGATTTCATATCCATGCTCT+TGG 0.477680 6:+24662124 MsG0680031689.01.T01:CDS
AATTCTTTACCTTTCCATCT+CGG 0.479985 6:-24662600 None:intergenic
TACTCCGATTTCTCCAAATC+GGG 0.489707 6:-24664823 None:intergenic
TATGAGATGGAAGGTGGAAA+GGG 0.492874 6:+24660700 MsG0680031689.01.T01:CDS
ACCAATGGCTGCAACTCCAC+TGG 0.499697 6:+24662154 MsG0680031689.01.T01:CDS
ATGCGTAAAGGTTTCGGCCA+AGG 0.502838 6:+24666020 MsG0680031689.01.T01:three_prime_UTR
ACCGGCATGTCGCTCATCAT+CGG 0.503149 6:-24662423 None:intergenic
TCAAGTTGTTCTATGCGTAA+AGG 0.504089 6:+24666008 MsG0680031689.01.T01:three_prime_UTR
AATATGTAGATTCCACTAAG+TGG 0.506400 6:+24662946 MsG0680031689.01.T01:intron
ACCAGTGGAGTTGCAGCCAT+TGG 0.511673 6:-24662155 None:intergenic
GTATGAGATGGAAGGTGGAA+AGG 0.513322 6:+24660699 MsG0680031689.01.T01:CDS
TCACTTCAATCCACTAAAGA+AGG 0.514006 6:+24662385 MsG0680031689.01.T01:CDS
AACATTGTTGCAGGCCCTGA+TGG 0.520070 6:+24662455 MsG0680031689.01.T01:CDS
ACCGCATGCTATTCTTGCAC+CGG 0.523965 6:-24664516 None:intergenic
CATGCCGATCCTGATGATCT+TGG 0.524936 6:+24663003 MsG0680031689.01.T01:CDS
GGTGGAAAGGGAACAGTGAA+AGG 0.528789 6:+24660712 MsG0680031689.01.T01:CDS
AGAGTGTATGAGATGGAAGG+TGG 0.531556 6:+24660694 MsG0680031689.01.T01:CDS
AAAATAACAGGGTTGTCTCC+AGG 0.534858 6:+24662094 MsG0680031689.01.T01:CDS
CATGAGCTGAGCAAAACTAC+TGG 0.538533 6:+24664488 MsG0680031689.01.T01:CDS
CACTTTGTTCAAGACCCCAA+TGG 0.540843 6:+24660778 MsG0680031689.01.T01:CDS
TCAGGATGAAAGAACCTCCT+TGG 0.543305 6:+24664720 MsG0680031689.01.T01:CDS
AAGGCAAACTAAGGTTGCCT+TGG 0.551951 6:-24666037 None:intergenic
AATTATCCTAAACAGATGAC+TGG 0.553222 6:-24665857 None:intergenic
AGCAAAACTACTGGAAATGC+CGG 0.555884 6:+24664497 MsG0680031689.01.T01:CDS
CAGAGAGTGTATGAGATGGA+AGG 0.557046 6:+24660691 MsG0680031689.01.T01:CDS
ACTCAAGGGAAGGCAAACTA+AGG 0.557757 6:-24666046 None:intergenic
TCAAATGTTGAAACTACTCA+AGG 0.557849 6:-24666061 None:intergenic
AGTGGAGTTCATTCCATACT+CGG 0.559047 6:+24662964 MsG0680031689.01.T01:CDS
AAAGGTGTGGCTCTCATCAT+CGG 0.560465 6:+24660730 MsG0680031689.01.T01:CDS
TTCTTTAGTGGATTGAAGTG+AGG 0.568540 6:-24662383 None:intergenic
GATCCTGATGATCTTGGAAG+AGG 0.568790 6:+24663009 MsG0680031689.01.T01:CDS
AGAACAGAGAGTGTATGAGA+TGG 0.571472 6:+24660687 MsG0680031689.01.T01:CDS
AACAATGTTACCCAAATCAC+CGG 0.572762 6:-24662441 None:intergenic
GCTCTTGGTGACACCACCAA+TGG 0.572990 6:+24662139 MsG0680031689.01.T01:CDS
AGTGGAGTTGCAGCCATTGG+TGG 0.573666 6:-24662152 None:intergenic
GCTGAGATTTCTATCCGAGA+TGG 0.577626 6:+24662586 MsG0680031689.01.T01:CDS
TGGTGGTGTCACCAAGAGCA+TGG 0.577938 6:-24662135 None:intergenic
ACCGATGATGAGCGACATGC+CGG 0.585361 6:+24662422 MsG0680031689.01.T01:CDS
GATTTCTATCCGAGATGGAA+AGG 0.597898 6:+24662591 MsG0680031689.01.T01:CDS
TTGTTGTATGGTATGAGCCA+AGG 0.604324 6:-24664737 None:intergenic
TGTTGAAACTACTCAAGGGA+AGG 0.606404 6:-24666056 None:intergenic
GTGGAGTTCATTCCATACTC+GGG 0.606530 6:+24662965 MsG0680031689.01.T01:CDS
ATATGAAATCCATGAAGACC+TGG 0.621175 6:-24662112 None:intergenic
CAAATGTTGAAACTACTCAA+GGG 0.636032 6:-24666060 None:intergenic
TCTTCCAAGATCATCAGGAT+CGG 0.643159 6:-24663007 None:intergenic
GAAAGAAGGTAATACCATCA+GGG 0.648692 6:-24662469 None:intergenic
GCATGTCGCTCATCATCGGT+AGG 0.650098 6:-24662419 None:intergenic
AATCCACTAAAGAAGGATCA+CGG 0.653056 6:+24662392 MsG0680031689.01.T01:CDS
TTGTATGGTATGAGCCAAGG+AGG 0.683186 6:-24664734 None:intergenic
GCCGGTGCAAGAATAGCATG+CGG 0.698366 6:+24664515 MsG0680031689.01.T01:CDS
AAAGGGAACAGTGAAAGGTG+TGG 0.714226 6:+24660717 MsG0680031689.01.T01:CDS
AGAGAGAGAAAGAACCATTG+GGG 0.717171 6:-24660792 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATTTATAATTTAATAC+CGG + Chr6:24664232-24664251 MsG0680031689.01.T01:intron 10.0%
!! AGTAGATTATGATTTATTAA+TGG - Chr6:24664581-24664600 None:intergenic 15.0%
!! ATAAAAAAAAGCTCAAAAAT+TGG - Chr6:24664453-24664472 None:intergenic 15.0%
!! ATCATAACATAGTATATATT+CGG - Chr6:24661931-24661950 None:intergenic 15.0%
!! ATTCATTAAGTAAATTAAGT+AGG + Chr6:24665480-24665499 MsG0680031689.01.T01:intron 15.0%
!! CGGTATTAAATTATAAATAA+AGG - Chr6:24664234-24664253 None:intergenic 15.0%
!! TAAACTAATTATGTATGAAA+TGG - Chr6:24664617-24664636 None:intergenic 15.0%
!! TACATTATTCGTATTATTTA+TGG + Chr6:24664545-24664564 MsG0680031689.01.T01:intron 15.0%
!! TATCATATTAGATATATATC+AGG + Chr6:24661308-24661327 MsG0680031689.01.T01:intron 15.0%
!!! AGAAAAATAAAACGTATTTT+TGG + Chr6:24664933-24664952 MsG0680031689.01.T01:intron 15.0%
!!! ATGATATTTATTTTCAATGT+GGG + Chr6:24661068-24661087 MsG0680031689.01.T01:intron 15.0%
!!! CTATGTTATGATTTTATATT+AGG + Chr6:24661939-24661958 MsG0680031689.01.T01:intron 15.0%
!!! GAAAAATAAAACGTATTTTT+GGG + Chr6:24664934-24664953 MsG0680031689.01.T01:intron 15.0%
!!! TTTCTAGTTTTATATGATTT+TGG + Chr6:24662000-24662019 MsG0680031689.01.T01:intron 15.0%
!!! TTTTGAGCTTTTTTTTATAA+TGG + Chr6:24664455-24664474 MsG0680031689.01.T01:intron 15.0%
!! AAAAAAAAAAACAGCTTGTA+AGG + Chr6:24661472-24661491 MsG0680031689.01.T01:intron 20.0%
!! AACTTTGAATGAAGTTTAAT+TGG + Chr6:24662712-24662731 MsG0680031689.01.T01:intron 20.0%
!! AATAAATCATAATCTACTCT+AGG + Chr6:24664583-24664602 MsG0680031689.01.T01:intron 20.0%
!! ATATTGAATAATGAGAAAAG+TGG - Chr6:24662187-24662206 None:intergenic 20.0%
!! GTCAAATAGTAATTATGATT+GGG + Chr6:24662039-24662058 MsG0680031689.01.T01:intron 20.0%
!! TAAAAGAATCTCTCATAAAT+TGG - Chr6:24664973-24664992 None:intergenic 20.0%
!! TAAAGTGCAAATTACTTATA+TGG + Chr6:24663210-24663229 MsG0680031689.01.T01:intron 20.0%
!! TAAGTTAATCTGATAAAACA+TGG + Chr6:24662316-24662335 MsG0680031689.01.T01:intron 20.0%
!! TATAAAGAAAATCGTCATTT+AGG + Chr6:24663458-24663477 MsG0680031689.01.T01:intron 20.0%
!! TATATTTCATGTTTCATAAG+AGG - Chr6:24660846-24660865 None:intergenic 20.0%
!! TGTCAAATAGTAATTATGAT+TGG + Chr6:24662038-24662057 MsG0680031689.01.T01:intron 20.0%
!!! ATATAAAGGTGTATTTTTCA+TGG - Chr6:24663257-24663276 None:intergenic 20.0%
!!! CACTTTTCTTATCAAATATT+CGG - Chr6:24662287-24662306 None:intergenic 20.0%
!!! CTATGAATTGGTTTATATAT+CGG + Chr6:24661605-24661624 MsG0680031689.01.T01:intron 20.0%
!!! GAGGTAAGAATTTAAAATTT+TGG + Chr6:24663028-24663047 MsG0680031689.01.T01:intron 20.0%
!!! GATGATATTTATTTTCAATG+TGG + Chr6:24661067-24661086 MsG0680031689.01.T01:intron 20.0%
!!! GTTGGATTAATATTTTATCT+CGG + Chr6:24665545-24665564 MsG0680031689.01.T01:intron 20.0%
!!! TAAATGACGATTTTCTTTAT+AGG - Chr6:24663459-24663478 None:intergenic 20.0%
!!! TCTCTATTTAGTCTTTATAA+AGG - Chr6:24663860-24663879 None:intergenic 20.0%
!!! TTTATAATTTAATACCGGTT+AGG + Chr6:24664237-24664256 MsG0680031689.01.T01:intron 20.0%
!!! TTTGATCTTATACAATTTTC+AGG + Chr6:24666079-24666098 MsG0680031689.01.T01:three_prime_UTR 20.0%
! AACTACACAAAAGATATCAA+GGG - Chr6:24663588-24663607 None:intergenic 25.0%
! ACAATTGTTAATTGTTGAAC+AGG + Chr6:24665822-24665841 MsG0680031689.01.T01:intron 25.0%
! ACATATTTGGAAGTTATTGA+AGG - Chr6:24663826-24663845 None:intergenic 25.0%
! ACTAAATAGAGATGCAAAAA+AGG + Chr6:24663868-24663887 MsG0680031689.01.T01:intron 25.0%
! ATAATTCATTCTTACCAAAC+CGG + Chr6:24661170-24661189 MsG0680031689.01.T01:intron 25.0%
! ATGTAACTGGAAAAATAACA+GGG + Chr6:24662083-24662102 MsG0680031689.01.T01:CDS 25.0%
! ATTTATTCAATGTAAAGCGT+CGG - Chr6:24662230-24662249 None:intergenic 25.0%
! CAAATAGATACACTATGAAT+TGG + Chr6:24661593-24661612 MsG0680031689.01.T01:intron 25.0%
! CAATTCATAGTGTATCTATT+TGG - Chr6:24661595-24661614 None:intergenic 25.0%
! CACTTTCATTCGTAAAAAAT+CGG + Chr6:24664868-24664887 MsG0680031689.01.T01:intron 25.0%
! CAGTATCAAGATTAATCTAA+AGG - Chr6:24665571-24665590 None:intergenic 25.0%
! CATAAATTGGAACAAAAATC+AGG - Chr6:24664960-24664979 None:intergenic 25.0%
! CATACTAAAAAGTAAGCATT+TGG - Chr6:24663321-24663340 None:intergenic 25.0%
! CCACTTTAATTAACAATAAG+CGG - Chr6:24662654-24662673 None:intergenic 25.0%
! CTAAGTGGTAGAAAATATAA+AGG - Chr6:24663271-24663290 None:intergenic 25.0%
! GATTCTATAGTTAATCAACT+AGG + Chr6:24664269-24664288 MsG0680031689.01.T01:intron 25.0%
! GGATTAATAAAACTTGTATC+AGG - Chr6:24663899-24663918 None:intergenic 25.0%
! GTCATATTAAACTAGAACTT+GGG - Chr6:24665770-24665789 None:intergenic 25.0%
! TAATAAAACTTGTATCAGGT+TGG - Chr6:24663895-24663914 None:intergenic 25.0%
! TCAAAGATTAAACTGAGTAA+AGG - Chr6:24663781-24663800 None:intergenic 25.0%
! TCTTATTCTCTTTACAAAAC+TGG + Chr6:24661793-24661812 MsG0680031689.01.T01:intron 25.0%
! TGAAAAAAGAAGAAGAAAGA+AGG - Chr6:24662486-24662505 None:intergenic 25.0%
! TGGAACAATATTTATCAACT+TGG - Chr6:24663237-24663256 None:intergenic 25.0%
! TGTAAAAACTATAAGAGTAG+AGG - Chr6:24663108-24663127 None:intergenic 25.0%
! TTAGATTAATCTTGATACTG+AGG + Chr6:24665571-24665590 MsG0680031689.01.T01:intron 25.0%
! TTGAATAAAATCACATGTGT+TGG - Chr6:24664122-24664141 None:intergenic 25.0%
!! CATATAAAGAAAGAAGCATA+AGG - Chr6:24665792-24665811 None:intergenic 25.0%
!! CTACATATTTAAAGTGAGAA+AGG - Chr6:24662935-24662954 None:intergenic 25.0%
!! CTACTCTTATAGTTTTTACA+CGG + Chr6:24663108-24663127 MsG0680031689.01.T01:intron 25.0%
!!! AATTTTGGACTTGTTTGATT+AGG + Chr6:24663043-24663062 MsG0680031689.01.T01:intron 25.0%
!!! AGTCTTTATTTTACAACACT+GGG - Chr6:24662758-24662777 None:intergenic 25.0%
!!! GCTTTTTTTTATAATGGAAC+AGG + Chr6:24664461-24664480 MsG0680031689.01.T01:intron 25.0%
!!! TACAAAGTGTTGTTAAATAG+TGG + Chr6:24662830-24662849 MsG0680031689.01.T01:intron 25.0%
!!! TAGTCTTTATTTTACAACAC+TGG - Chr6:24662759-24662778 None:intergenic 25.0%
!!! TTTCATATTGATGATGTATC+CGG + Chr6:24664087-24664106 MsG0680031689.01.T01:intron 25.0%
!!! TTTTTTTATAATGGAACAGG+TGG + Chr6:24664464-24664483 MsG0680031689.01.T01:intron 25.0%
AACACATCATGCACATATAT+GGG - Chr6:24663636-24663655 None:intergenic 30.0%
AATATGTAGATTCCACTAAG+TGG + Chr6:24662946-24662965 MsG0680031689.01.T01:intron 30.0%
AATTAACAATAAGCGGAATG+AGG - Chr6:24662647-24662666 None:intergenic 30.0%
AATTATCCTAAACAGATGAC+TGG - Chr6:24665860-24665879 None:intergenic 30.0%
AATTCTTTACCTTTCCATCT+CGG - Chr6:24662603-24662622 None:intergenic 30.0%
AATTGTTGAACAGGTATCAT+TGG + Chr6:24665831-24665850 MsG0680031689.01.T01:intron 30.0%
ACATTACTGTCTTAAGCTAA+CGG - Chr6:24665734-24665753 None:intergenic 30.0%
ACATTATCTCTTATCAATGC+TGG + Chr6:24661858-24661877 MsG0680031689.01.T01:intron 30.0%
ACGTTACAAAGAGATTTCAA+TGG - Chr6:24665226-24665245 None:intergenic 30.0%
CAAATAGATAGACTGTGAAT+TGG + Chr6:24661133-24661152 MsG0680031689.01.T01:intron 30.0%
CAAATGTTGAAACTACTCAA+GGG - Chr6:24666063-24666082 None:intergenic 30.0%
CAATTCACAGTCTATCTATT+TGG - Chr6:24661135-24661154 None:intergenic 30.0%
CAGCTATAGAGAAATCAATT+TGG - Chr6:24665695-24665714 None:intergenic 30.0%
CATGTAACTGGAAAAATAAC+AGG + Chr6:24662082-24662101 MsG0680031689.01.T01:CDS 30.0%
CATTGAAAAAAGATATCGTC+TGG - Chr6:24661528-24661547 None:intergenic 30.0%
CCACTCTTTGTAAACTATTT+CGG + Chr6:24661835-24661854 MsG0680031689.01.T01:intron 30.0%
CCGCTTATTGTTAATTAAAG+TGG + Chr6:24662651-24662670 MsG0680031689.01.T01:intron 30.0%
CGAATAACTAATCTCATCAA+AGG - Chr6:24663518-24663537 None:intergenic 30.0%
CGTTACAAAGAGATTTCAAT+GGG - Chr6:24665225-24665244 None:intergenic 30.0%
GAACTACACAAAAGATATCA+AGG - Chr6:24663589-24663608 None:intergenic 30.0%
GATATCAGAGTCTATGTATT+CGG - Chr6:24661292-24661311 None:intergenic 30.0%
GGACTAACTTGATACATATT+TGG - Chr6:24663839-24663858 None:intergenic 30.0%
GGTCATATTAAACTAGAACT+TGG - Chr6:24665771-24665790 None:intergenic 30.0%
GTTTATACGCTGAATATGTA+AGG - Chr6:24661343-24661362 None:intergenic 30.0%
TAACACATCATGCACATATA+TGG - Chr6:24663637-24663656 None:intergenic 30.0%
TAACGTTACTCATCATATAG+TGG + Chr6:24665240-24665259 MsG0680031689.01.T01:intron 30.0%
TAATCTTAGTACAAGAGGAA+TGG + Chr6:24665634-24665653 MsG0680031689.01.T01:intron 30.0%
TACAAAACAGAAAACTCTCA+AGG - Chr6:24662560-24662579 None:intergenic 30.0%
TACAAATCAACTCATGTTTG+AGG - Chr6:24663666-24663685 None:intergenic 30.0%
TCAAATGTTGAAACTACTCA+AGG - Chr6:24666064-24666083 None:intergenic 30.0%
TCGCTAAAACATAACAAGTT+GGG - Chr6:24663926-24663945 None:intergenic 30.0%
TCTATGTATTCGGTAATGTT+TGG - Chr6:24661282-24661301 None:intergenic 30.0%
TGAAATGAGTTAACAAAGAG+TGG - Chr6:24661669-24661688 None:intergenic 30.0%
TGTTGTTATGAATCCAAAGA+GGG - Chr6:24664400-24664419 None:intergenic 30.0%
TTCACAACAGAATTGTTGTA+TGG - Chr6:24664752-24664771 None:intergenic 30.0%
TTGTATAGAGTTTGTCTCTT+TGG + Chr6:24665080-24665099 MsG0680031689.01.T01:intron 30.0%
TTGTGAAAGTGACTCAAAAT+TGG + Chr6:24664765-24664784 MsG0680031689.01.T01:CDS 30.0%
! AGTCATCTGTTTAGGATAAT+TGG + Chr6:24665859-24665878 MsG0680031689.01.T01:exon 30.0%
! ATATTTTCTACCACTTAGCT+TGG + Chr6:24663273-24663292 MsG0680031689.01.T01:intron 30.0%
! CAAATTGATTTCTCTATAGC+TGG + Chr6:24665693-24665712 MsG0680031689.01.T01:intron 30.0%
! GAATCATTTGAAGCATAACA+TGG - Chr6:24663554-24663573 None:intergenic 30.0%
! TTACTCATCATATAGTGGAA+CGG + Chr6:24665245-24665264 MsG0680031689.01.T01:intron 30.0%
! TTATTTTCAATGTGGGACTT+TGG + Chr6:24661075-24661094 MsG0680031689.01.T01:intron 30.0%
! TTGAGAGTTTTCTGTTTTGT+AGG + Chr6:24662559-24662578 MsG0680031689.01.T01:intron 30.0%
! TTGTTGTTATGAATCCAAAG+AGG - Chr6:24664401-24664420 None:intergenic 30.0%
!! ATTTAACTTGATCATGTGAC+AGG - Chr6:24665663-24665682 None:intergenic 30.0%
!! GAAGTGTTTCAATGCAATTT+TGG + Chr6:24662338-24662357 MsG0680031689.01.T01:intron 30.0%
!! TCTATCTATTTGGTAGTGTT+TGG - Chr6:24661125-24661144 None:intergenic 30.0%
!! TGTTCCATACACTTTGATTT+TGG + Chr6:24665386-24665405 MsG0680031689.01.T01:intron 30.0%
!!! CTTTTTTCAATGTGTGACTT+CGG + Chr6:24661536-24661555 MsG0680031689.01.T01:intron 30.0%
AAAAGATATCAAGGGCTGAA+AGG - Chr6:24663580-24663599 None:intergenic 35.0%
AAAGATATCAAGGGCTGAAA+GGG - Chr6:24663579-24663598 None:intergenic 35.0%
AACAATGTTACCCAAATCAC+CGG - Chr6:24662444-24662463 None:intergenic 35.0%
AACCATTAGAACTACACCTT+GGG - Chr6:24663351-24663370 None:intergenic 35.0%
AATATCCGTGGCAAGTAAAT+AGG + Chr6:24663734-24663753 MsG0680031689.01.T01:intron 35.0%
AATCCACTAAAGAAGGATCA+CGG + Chr6:24662392-24662411 MsG0680031689.01.T01:CDS 35.0%
AATCCTAATAGTGTTTCCCA+AGG - Chr6:24665136-24665155 None:intergenic 35.0%
AATTATGATTGGGATTGTGC+AGG + Chr6:24662049-24662068 MsG0680031689.01.T01:intron 35.0%
AATTTACTACTTCCCCTCTT+TGG + Chr6:24664384-24664403 MsG0680031689.01.T01:intron 35.0%
ACATTGTATCAGTGTAAACC+TGG + Chr6:24665005-24665024 MsG0680031689.01.T01:intron 35.0%
ACCAATAACAACTTGATGTG+TGG - Chr6:24665432-24665451 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG + Chr6:24665144-24665163 MsG0680031689.01.T01:intron 35.0%
AGAAAGAAGGTAATACCATC+AGG - Chr6:24662473-24662492 None:intergenic 35.0%
AGAAAGGCAACAACAAAACT+AGG + Chr6:24665055-24665074 MsG0680031689.01.T01:intron 35.0%
AGAGAAGCTATGTAGTTAGA+AGG + Chr6:24664321-24664340 MsG0680031689.01.T01:intron 35.0%
AGGAGATTGAAAAGGATTAC+AGG + Chr6:24663387-24663406 MsG0680031689.01.T01:intron 35.0%
AGTATATATTCGGTAGTGCT+TGG - Chr6:24661921-24661940 None:intergenic 35.0%
ATAAACCACTTCAATTAGCC+TGG + Chr6:24661357-24661376 MsG0680031689.01.T01:intron 35.0%
ATATATGAAGCCAAGCTAAG+TGG - Chr6:24663286-24663305 None:intergenic 35.0%
ATATGAAATCCATGAAGACC+TGG - Chr6:24662115-24662134 None:intergenic 35.0%
ATTATGATTGGGATTGTGCA+GGG + Chr6:24662050-24662069 MsG0680031689.01.T01:intron 35.0%
CCGAAATAGTTTACAAAGAG+TGG - Chr6:24661838-24661857 None:intergenic 35.0%
CCTCTTGTACTAAGATTATC+CGG - Chr6:24665632-24665651 None:intergenic 35.0%
GAAAGAAGGTAATACCATCA+GGG - Chr6:24662472-24662491 None:intergenic 35.0%
GAAAGGCAACAACAAAACTA+GGG + Chr6:24665056-24665075 MsG0680031689.01.T01:intron 35.0%
GAGAAGCTATGTAGTTAGAA+GGG + Chr6:24664322-24664341 MsG0680031689.01.T01:intron 35.0%
GATGAAACAAGGGTTTAGAA+AGG + Chr6:24665039-24665058 MsG0680031689.01.T01:intron 35.0%
GCAACCAAAATCAAAGTGTA+TGG - Chr6:24665393-24665412 None:intergenic 35.0%
GGAGATTGAAAAGGATTACA+GGG + Chr6:24663388-24663407 MsG0680031689.01.T01:intron 35.0%
GGGAATTATACACATGTAAC+TGG + Chr6:24662070-24662089 MsG0680031689.01.T01:intron 35.0%
GTCGCTAAAACATAACAAGT+TGG - Chr6:24663927-24663946 None:intergenic 35.0%
GTTGTTATGAATCCAAAGAG+GGG - Chr6:24664399-24664418 None:intergenic 35.0%
TCACTTCAATCCACTAAAGA+AGG + Chr6:24662385-24662404 MsG0680031689.01.T01:CDS 35.0%
TCGGTAATGTTTGGCATAAA+GGG - Chr6:24661273-24661292 None:intergenic 35.0%
TGTTCTATGCGTAAAGGTTT+CGG + Chr6:24666014-24666033 MsG0680031689.01.T01:three_prime_UTR 35.0%
TTAATCCAACAGCCGAAATT+CGG - Chr6:24665535-24665554 None:intergenic 35.0%
TTAATCTTGATACTGAGGTG+TGG + Chr6:24665576-24665595 MsG0680031689.01.T01:intron 35.0%
TTCGGTAATGTTTGGCATAA+AGG - Chr6:24661274-24661293 None:intergenic 35.0%
TTGCGAATTGCAGAAAATAG+TGG - Chr6:24662892-24662911 None:intergenic 35.0%
TTTAGCGACTTAACTGCATA+TGG + Chr6:24663938-24663957 MsG0680031689.01.T01:intron 35.0%
TTTATATGTTCAGTAGCCCT+TGG - Chr6:24661742-24661761 None:intergenic 35.0%
! AAACATAACAAGTTGGGACT+TGG - Chr6:24663920-24663939 None:intergenic 35.0%
! AATTAGCCTGAAATTGCCAT+TGG - Chr6:24661441-24661460 None:intergenic 35.0%
! ACACAGTTTGAGTTTATGTC+AGG + Chr6:24664702-24664721 MsG0680031689.01.T01:CDS 35.0%
! AGAAATCGGAGTACGATTTT+TGG + Chr6:24664833-24664852 MsG0680031689.01.T01:intron 35.0%
! ATTAGCCTGAAATTGCCATT+GGG - Chr6:24661440-24661459 None:intergenic 35.0%
! GAAATCGGAGTACGATTTTT+GGG + Chr6:24664834-24664853 MsG0680031689.01.T01:intron 35.0%
! GTTTGCTGAAGCTGTTAAAT+CGG + Chr6:24664798-24664817 MsG0680031689.01.T01:CDS 35.0%
! GTTTTTACACGGTAACTCAT+TGG + Chr6:24663119-24663138 MsG0680031689.01.T01:intron 35.0%
! TCAAGTTGTTCTATGCGTAA+AGG + Chr6:24666008-24666027 MsG0680031689.01.T01:three_prime_UTR 35.0%
! TCCACACATCAAGTTGTTAT+TGG + Chr6:24665428-24665447 MsG0680031689.01.T01:intron 35.0%
! TCTTTTGTGTAGTTCCTGAT+CGG + Chr6:24663594-24663613 MsG0680031689.01.T01:intron 35.0%
! TTAATACCGGTTAGGATAGA+GGG + Chr6:24664245-24664264 MsG0680031689.01.T01:intron 35.0%
! TTTAATACCGGTTAGGATAG+AGG + Chr6:24664244-24664263 MsG0680031689.01.T01:intron 35.0%
!! AAGAATTTGTTGACCCAGTT+CGG - Chr6:24665307-24665326 None:intergenic 35.0%
!! AAGCTTCTTTGGAATTCTGA+AGG + Chr6:24664029-24664048 MsG0680031689.01.T01:intron 35.0%
!! ATTTGGTAGTGTTTGGCATA+AGG - Chr6:24661118-24661137 None:intergenic 35.0%
!! CTTTACAAAACTGGCTTGTA+AGG + Chr6:24661802-24661821 MsG0680031689.01.T01:intron 35.0%
!! GAACAAACACTAGGTTTTGA+GGG + Chr6:24665102-24665121 MsG0680031689.01.T01:intron 35.0%
!! TAGTTCTAATGGTTGAGCTA+CGG + Chr6:24663357-24663376 MsG0680031689.01.T01:intron 35.0%
!! TTCTTTAGTGGATTGAAGTG+AGG - Chr6:24662386-24662405 None:intergenic 35.0%
!! TTTGGTAGTGTTTGGCATAA+GGG - Chr6:24661117-24661136 None:intergenic 35.0%
!!! TCGCTGTTGTTTTCTACTTT+TGG + Chr6:24665349-24665368 MsG0680031689.01.T01:intron 35.0%
AAAAAACAGCTTGTAAGGCG+AGG + Chr6:24661477-24661496 MsG0680031689.01.T01:intron 40.0%
AAAAACAGCTTGTAAGGCGA+GGG + Chr6:24661478-24661497 MsG0680031689.01.T01:intron 40.0%
AAAAGTAAGCATTTGGCACG+AGG - Chr6:24663314-24663333 None:intergenic 40.0%
AAAATAACAGGGTTGTCTCC+AGG + Chr6:24662094-24662113 MsG0680031689.01.T01:CDS 40.0%
ACAATGTATAAGTTGTCCCC+TGG + Chr6:24662527-24662546 MsG0680031689.01.T01:intron 40.0%
ACAGAAGCTACGTTTCAAAG+TGG - Chr6:24663082-24663101 None:intergenic 40.0%
AGAGAGAGAAAGAACCATTG+GGG - Chr6:24660795-24660814 None:intergenic 40.0%
AGAGAGAGAGAAAGAACCAT+TGG - Chr6:24660797-24660816 None:intergenic 40.0%
AGCAAAACTACTGGAAATGC+CGG + Chr6:24664497-24664516 MsG0680031689.01.T01:CDS 40.0%
AGGATTGAGTCTCTTGGTTA+CGG + Chr6:24665150-24665169 MsG0680031689.01.T01:intron 40.0%
AGTAGCCTATTTACTTGCCA+CGG - Chr6:24663742-24663761 None:intergenic 40.0%
AGTGGAGTTCATTCCATACT+CGG + Chr6:24662964-24662983 MsG0680031689.01.T01:CDS 40.0%
AGTGTAAACCTGGAGATAGA+GGG + Chr6:24665015-24665034 MsG0680031689.01.T01:intron 40.0%
ATCGGAGATAACAACGTTAG+AGG + Chr6:24660748-24660767 MsG0680031689.01.T01:CDS 40.0%
ATGGAATGAACTCCACTTAG+TGG - Chr6:24662961-24662980 None:intergenic 40.0%
ATTTGGCAGTGTTTGACGTA+AGG - Chr6:24661578-24661597 None:intergenic 40.0%
CAACCATTAGAACTACACCT+TGG - Chr6:24663352-24663371 None:intergenic 40.0%
CAATGTATAAGTTGTCCCCT+GGG + Chr6:24662528-24662547 MsG0680031689.01.T01:intron 40.0%
CACAAACAAAACTCAGCCAT+TGG - Chr6:24663973-24663992 None:intergenic 40.0%
CACAACTAACATCTCAATCC+TGG - Chr6:24664056-24664075 None:intergenic 40.0%
CATATGGAGGGTAATTCCAA+TGG + Chr6:24663954-24663973 MsG0680031689.01.T01:intron 40.0%
CCAAAACCATAAGCAATGGA+GGG + Chr6:24661019-24661038 MsG0680031689.01.T01:intron 40.0%
CCGGATAATCTTAGTACAAG+AGG + Chr6:24665629-24665648 MsG0680031689.01.T01:intron 40.0%
CCTTCCAAAACCATAAGCAA+TGG + Chr6:24661015-24661034 MsG0680031689.01.T01:intron 40.0%
CGACATTGACACGTTAACAT+TGG - Chr6:24664168-24664187 None:intergenic 40.0%
CGTTTCAAAGTGGAAAAACG+AGG - Chr6:24663072-24663091 None:intergenic 40.0%
GAAAACAACAGCGAGAGAAA+AGG - Chr6:24665343-24665362 None:intergenic 40.0%
GAAGTTTAATTGGATCCCGA+GGG + Chr6:24662722-24662741 MsG0680031689.01.T01:intron 40.0%
GAGAGAGAGAAAGAACCATT+GGG - Chr6:24660796-24660815 None:intergenic 40.0%
GATTTCTATCCGAGATGGAA+AGG + Chr6:24662591-24662610 MsG0680031689.01.T01:CDS 40.0%
GATTTGGGTAACATTGTTGC+AGG + Chr6:24662446-24662465 MsG0680031689.01.T01:CDS 40.0%
GCTTGTCTTGTAAGCTTCTT+TGG + Chr6:24664018-24664037 MsG0680031689.01.T01:intron 40.0%
GGATTTCATATCCATGCTCT+TGG + Chr6:24662124-24662143 MsG0680031689.01.T01:CDS 40.0%
GTACTCCGATTTCTCCAAAT+CGG - Chr6:24664827-24664846 None:intergenic 40.0%
TAAAAAATCGGAGCACGATC+TGG + Chr6:24664880-24664899 MsG0680031689.01.T01:intron 40.0%
TACTCCGATTTCTCCAAATC+GGG - Chr6:24664826-24664845 None:intergenic 40.0%
TATGAGATGGAAGGTGGAAA+GGG + Chr6:24660700-24660719 MsG0680031689.01.T01:CDS 40.0%
TCAATTCGTAGAAACCGATC+AGG - Chr6:24663611-24663630 None:intergenic 40.0%
TCACCTTGGGAAACACTATT+AGG + Chr6:24665130-24665149 MsG0680031689.01.T01:intron 40.0%
TCCAAAACCATAAGCAATGG+AGG + Chr6:24661018-24661037 MsG0680031689.01.T01:intron 40.0%
TCTTCCAAGATCATCAGGAT+CGG - Chr6:24663010-24663029 None:intergenic 40.0%
TGAAGTTTAATTGGATCCCG+AGG + Chr6:24662721-24662740 MsG0680031689.01.T01:intron 40.0%
TGGCAAGTAAATAGGCTACT+TGG + Chr6:24663742-24663761 MsG0680031689.01.T01:intron 40.0%
TGTTGAAACTACTCAAGGGA+AGG - Chr6:24666059-24666078 None:intergenic 40.0%
TTACCTCTTCCAAGATCATC+AGG - Chr6:24663015-24663034 None:intergenic 40.0%
TTAGAACTACACCTTGGGAA+CGG - Chr6:24663346-24663365 None:intergenic 40.0%
TTAGCCTGAAATTGCCATTG+GGG - Chr6:24661439-24661458 None:intergenic 40.0%
TTGTTGTATGGTATGAGCCA+AGG - Chr6:24664740-24664759 None:intergenic 40.0%
TTTAGTATGAACCGTTCCCA+AGG + Chr6:24663332-24663351 MsG0680031689.01.T01:intron 40.0%
TTTGGCAGTGTTTGACGTAA+GGG - Chr6:24661577-24661596 None:intergenic 40.0%
! AGAACAGAGAGTGTATGAGA+TGG + Chr6:24660687-24660706 MsG0680031689.01.T01:CDS 40.0%
! GATTGACAAGCAAAAGTACG+TGG - Chr6:24663698-24663717 None:intergenic 40.0%
! GGAACAAACACTAGGTTTTG+AGG + Chr6:24665101-24665120 MsG0680031689.01.T01:intron 40.0%
! TCATCATATAGTGGAACGGA+GGG + Chr6:24665249-24665268 MsG0680031689.01.T01:intron 40.0%
! TGTTACTTGGTCTCACTCTT+TGG + Chr6:24661195-24661214 MsG0680031689.01.T01:intron 40.0%
! TTTGAGGGTTGATTCACCTT+GGG + Chr6:24665117-24665136 MsG0680031689.01.T01:intron 40.0%
!! AAAACTGGCTTGTAAGGTGA+GGG + Chr6:24661808-24661827 MsG0680031689.01.T01:intron 40.0%
!! ACGAATGAAAGTGCCAATTC+TGG - Chr6:24664861-24664880 None:intergenic 40.0%
!! ACTTACCAAACCGACTTGTA+AGG + Chr6:24661638-24661657 MsG0680031689.01.T01:intron 40.0%
!! CTTACCAAACCGACTTGTAA+GGG + Chr6:24661639-24661658 MsG0680031689.01.T01:intron 40.0%
!! GTCTCTTTGGAACAAACACT+AGG + Chr6:24665093-24665112 MsG0680031689.01.T01:intron 40.0%
!! TTCCCAAGGTGTAGTTCTAA+TGG + Chr6:24663346-24663365 MsG0680031689.01.T01:intron 40.0%
!! TTGGTAGTGTTTGGCATAAG+GGG - Chr6:24661116-24661135 None:intergenic 40.0%
!! TTTTGAGGGTTGATTCACCT+TGG + Chr6:24665116-24665135 MsG0680031689.01.T01:intron 40.0%
!!! ACGATTTTTGGGACCAGAAT+TGG + Chr6:24664845-24664864 MsG0680031689.01.T01:intron 40.0%
!!! CCATTGCTTATGGTTTTGGA+AGG - Chr6:24661018-24661037 None:intergenic 40.0%
!!! GTGGTCTTGACTTGGTATTT+TGG + Chr6:24661379-24661398 MsG0680031689.01.T01:intron 40.0%
AAAGGGAACAGTGAAAGGTG+TGG + Chr6:24660717-24660736 MsG0680031689.01.T01:CDS 45.0%
AACTCTCAAGGAGATTTCCC+AGG - Chr6:24662548-24662567 None:intergenic 45.0%
AAGGCAAACTAAGGTTGCCT+TGG - Chr6:24666040-24666059 None:intergenic 45.0%
AATACCAAGTCAAGACCACC+AGG - Chr6:24661378-24661397 None:intergenic 45.0%
ACAACTTGATGTGTGGAGCA+AGG - Chr6:24665425-24665444 None:intergenic 45.0%
ACTCAAGGGAAGGCAAACTA+AGG - Chr6:24666049-24666068 None:intergenic 45.0%
ACTCTCAAGGAGATTTCCCA+GGG - Chr6:24662547-24662566 None:intergenic 45.0%
AGAGTGTATGAGATGGAAGG+TGG + Chr6:24660694-24660713 MsG0680031689.01.T01:CDS 45.0%
AGATAGAGGGGGATGAAACA+AGG + Chr6:24665028-24665047 MsG0680031689.01.T01:intron 45.0%
AGCGACTTAACTGCATATGG+AGG + Chr6:24663941-24663960 MsG0680031689.01.T01:intron 45.0%
AGGTCAATTTGGACCGAACT+GGG + Chr6:24665291-24665310 MsG0680031689.01.T01:intron 45.0%
AGTGAGACCAAGTAACAAGC+CGG - Chr6:24661192-24661211 None:intergenic 45.0%
CAACTTGATGTGTGGAGCAA+GGG - Chr6:24665424-24665443 None:intergenic 45.0%
CACTTTGTTCAAGACCCCAA+TGG + Chr6:24660778-24660797 MsG0680031689.01.T01:CDS 45.0%
CAGTGTAAACCTGGAGATAG+AGG + Chr6:24665014-24665033 MsG0680031689.01.T01:intron 45.0%
CATGAGCTGAGCAAAACTAC+TGG + Chr6:24664488-24664507 MsG0680031689.01.T01:CDS 45.0%
CTGCTTCAACTCAATATCCG+TGG + Chr6:24663722-24663741 MsG0680031689.01.T01:intron 45.0%
CTTAAGCTAACGGTCTACAG+CGG - Chr6:24665724-24665743 None:intergenic 45.0%
GAAAAGTGGAAACCAACCAG+TGG - Chr6:24662173-24662192 None:intergenic 45.0%
GAATCTCCCTCTATCCTAAC+CGG - Chr6:24664254-24664273 None:intergenic 45.0%
GATAGAGGGGGATGAAACAA+GGG + Chr6:24665029-24665048 MsG0680031689.01.T01:intron 45.0%
GATCCTGATGATCTTGGAAG+AGG + Chr6:24663009-24663028 MsG0680031689.01.T01:CDS 45.0%
GCACTCGAAGGAGATTGAAA+AGG + Chr6:24663379-24663398 MsG0680031689.01.T01:intron 45.0%
GCGACTTAACTGCATATGGA+GGG + Chr6:24663942-24663961 MsG0680031689.01.T01:intron 45.0%
GCTGAGATTTCTATCCGAGA+TGG + Chr6:24662586-24662605 MsG0680031689.01.T01:CDS 45.0%
GGATTGAGTCTCTTGGTTAC+GGG + Chr6:24665151-24665170 MsG0680031689.01.T01:intron 45.0%
GGTCCAAATTGACCTAGTCT+GGG - Chr6:24665286-24665305 None:intergenic 45.0%
GTATGAGATGGAAGGTGGAA+AGG + Chr6:24660699-24660718 MsG0680031689.01.T01:CDS 45.0%
GTCCAAATTGACCTAGTCTG+GGG - Chr6:24665285-24665304 None:intergenic 45.0%
GTGGAGTTCATTCCATACTC+GGG + Chr6:24662965-24662984 MsG0680031689.01.T01:CDS 45.0%
GTGTAAACCTGGAGATAGAG+GGG + Chr6:24665016-24665035 MsG0680031689.01.T01:intron 45.0%
TAGGTCAATTTGGACCGAAC+TGG + Chr6:24665290-24665309 MsG0680031689.01.T01:intron 45.0%
TCAGGATGAAAGAACCTCCT+TGG + Chr6:24664720-24664739 MsG0680031689.01.T01:CDS 45.0%
TCCAAATTGACCTAGTCTGG+GGG - Chr6:24665284-24665303 None:intergenic 45.0%
TCCAATGTCCATGTCTGTGT+CGG + Chr6:24664190-24664209 MsG0680031689.01.T01:intron 45.0%
TGGACTCCAGTCATCTGTTT+AGG + Chr6:24665851-24665870 MsG0680031689.01.T01:CDS 45.0%
TGTAAACCTGGAGATAGAGG+GGG + Chr6:24665017-24665036 MsG0680031689.01.T01:intron 45.0%
TGTTAAATCGGAGCCCGATT+TGG + Chr6:24664810-24664829 MsG0680031689.01.T01:CDS 45.0%
TTCTCCCCAATGGCAATTTC+AGG + Chr6:24661432-24661451 MsG0680031689.01.T01:intron 45.0%
TTGGCAGTGTTTGACGTAAG+GGG - Chr6:24661576-24661595 None:intergenic 45.0%
TTGTATGGTATGAGCCAAGG+AGG - Chr6:24664737-24664756 None:intergenic 45.0%
! AAAGGTGTGGCTCTCATCAT+CGG + Chr6:24660730-24660749 MsG0680031689.01.T01:CDS 45.0%
! AACCACTTCAATTAGCCTGG+TGG + Chr6:24661360-24661379 MsG0680031689.01.T01:intron 45.0%
! CAGAGAGTGTATGAGATGGA+AGG + Chr6:24660691-24660710 MsG0680031689.01.T01:CDS 45.0%
! CCCTCCATTGCTTATGGTTT+TGG - Chr6:24661022-24661041 None:intergenic 45.0%
! CTCATCATATAGTGGAACGG+AGG + Chr6:24665248-24665267 MsG0680031689.01.T01:intron 45.0%
! TGGTAGTGTTTGGCATAAGG+GGG - Chr6:24661115-24661134 None:intergenic 45.0%
!! CAAAACTGGCTTGTAAGGTG+AGG + Chr6:24661807-24661826 MsG0680031689.01.T01:intron 45.0%
!! CTTTGGAATTCTGAAGGTCC+AGG + Chr6:24664035-24664054 MsG0680031689.01.T01:intron 45.0%
!! TACCAAACCGGCTTGTTACT+TGG + Chr6:24661182-24661201 MsG0680031689.01.T01:intron 45.0%
!!! GCTGGGTTTTGGGTAGAATT+AGG + Chr6:24665179-24665198 MsG0680031689.01.T01:intron 45.0%
!!! GGGTTTTGGGTAGAATTAGG+CGG + Chr6:24665182-24665201 MsG0680031689.01.T01:intron 45.0%
!!! GGTTTTGGGTAGAATTAGGC+GGG + Chr6:24665183-24665202 MsG0680031689.01.T01:intron 45.0%
AACAACAGCTCTCCCGAGTA+TGG - Chr6:24662980-24662999 None:intergenic 50.0%
AACATTGTTGCAGGCCCTGA+TGG + Chr6:24662455-24662474 MsG0680031689.01.T01:CDS 50.0%
ACCGACACAGACATGGACAT+TGG - Chr6:24664194-24664213 None:intergenic 50.0%
ACCGCATGCTATTCTTGCAC+CGG - Chr6:24664519-24664538 None:intergenic 50.0%
ACTGGGTAAGTACAGTCCCT+CGG - Chr6:24662741-24662760 None:intergenic 50.0%
AGATTATCCGGCTTCGACAC+TGG - Chr6:24665620-24665639 None:intergenic 50.0%
AGTAAGCATTTGGCACGAGG+AGG - Chr6:24663311-24663330 None:intergenic 50.0%
AGTCTCTTGGTTACGGGAAG+AGG + Chr6:24665157-24665176 MsG0680031689.01.T01:intron 50.0%
AGTGGCACTCCCTTACAAGT+CGG - Chr6:24661651-24661670 None:intergenic 50.0%
ATGCGTAAAGGTTTCGGCCA+AGG + Chr6:24666020-24666039 MsG0680031689.01.T01:three_prime_UTR 50.0%
CACTCCCTTACAAGTCGGTT+TGG - Chr6:24661646-24661665 None:intergenic 50.0%
CAGTCTCTCCAGCCGAATTT+CGG + Chr6:24665520-24665539 MsG0680031689.01.T01:intron 50.0%
CATGCCGATCCTGATGATCT+TGG + Chr6:24663003-24663022 MsG0680031689.01.T01:CDS 50.0%
CGGTAGTGCTTGGCATAAGA+GGG - Chr6:24661911-24661930 None:intergenic 50.0%
CGGTCCAAATTGACCTAGTC+TGG - Chr6:24665287-24665306 None:intergenic 50.0%
CTCTCAAGGAGATTTCCCAG+GGG - Chr6:24662546-24662565 None:intergenic 50.0%
GACCAAGTAACAAGCCGGTT+TGG - Chr6:24661187-24661206 None:intergenic 50.0%
GACCACCAGGCTAATTGAAG+TGG - Chr6:24661365-24661384 None:intergenic 50.0%
GCTCCGTGATCCTTCTTTAG+TGG - Chr6:24662398-24662417 None:intergenic 50.0%
GGAGCACGATCTGGCAAAAT+CGG + Chr6:24664889-24664908 MsG0680031689.01.T01:intron 50.0%
GGCTTTGCCTTCTTTACGTC+AGG + Chr6:24662359-24662378 MsG0680031689.01.T01:intron 50.0%
GGTAGTGTTTGGCATAAGGG+GGG - Chr6:24661114-24661133 None:intergenic 50.0%
GGTGGAAAGGGAACAGTGAA+AGG + Chr6:24660712-24660731 MsG0680031689.01.T01:CDS 50.0%
GTGACACCCTCCATTGCTTA+TGG - Chr6:24661028-24661047 None:intergenic 50.0%
GTGAGGACCTGACGTAAAGA+AGG - Chr6:24662369-24662388 None:intergenic 50.0%
TCAGGTTCGATTCTCCCCAA+TGG + Chr6:24661422-24661441 MsG0680031689.01.T01:intron 50.0%
TCCCCCAGACTAGGTCAATT+TGG + Chr6:24665280-24665299 MsG0680031689.01.T01:intron 50.0%
TCGGTAGTGCTTGGCATAAG+AGG - Chr6:24661912-24661931 None:intergenic 50.0%
TGATACTGAGGTGTGGCTAG+AGG + Chr6:24665583-24665602 MsG0680031689.01.T01:intron 50.0%
TGGCAGTGTTTGACGTAAGG+GGG - Chr6:24661575-24661594 None:intergenic 50.0%
TTTCATCCCCCTCTATCTCC+AGG - Chr6:24665026-24665045 None:intergenic 50.0%
! ATCACGTGTGAGTGTCGTGT+TGG - Chr6:24662254-24662273 None:intergenic 50.0%
! CATGTGTTGGTGTCTGACAC+CGG - Chr6:24664109-24664128 None:intergenic 50.0%
! TTAGCCTGGTGGTCTTGACT+TGG + Chr6:24661371-24661390 MsG0680031689.01.T01:intron 50.0%
! TTTGGAGTGTTCTCCTCTCG+AGG + Chr6:24661397-24661416 MsG0680031689.01.T01:intron 50.0%
!! ATGAAGCACCGACACAGACA+TGG - Chr6:24664201-24664220 None:intergenic 50.0%
!! GGAGCCCGATTTGGAGAAAT+CGG + Chr6:24664819-24664838 MsG0680031689.01.T01:CDS 50.0%
ACCAATGGCTGCAACTCCAC+TGG + Chr6:24662154-24662173 MsG0680031689.01.T01:CDS 55.0%
ACCAGTGGAGTTGCAGCCAT+TGG - Chr6:24662158-24662177 None:intergenic 55.0%
ACCGATGATGAGCGACATGC+CGG + Chr6:24662422-24662441 MsG0680031689.01.T01:CDS 55.0%
ACCGGCATGTCGCTCATCAT+CGG - Chr6:24662426-24662445 None:intergenic 55.0%
AGTGGAGTTGCAGCCATTGG+TGG - Chr6:24662155-24662174 None:intergenic 55.0%
ATCGAACCTGAGACCTCGAG+AGG - Chr6:24661413-24661432 None:intergenic 55.0%
ATGGCTGCAACTCCACTGGT+TGG + Chr6:24662158-24662177 MsG0680031689.01.T01:intron 55.0%
CAATACACCCCCTACGCCAA+GGG + Chr6:24661723-24661742 MsG0680031689.01.T01:intron 55.0%
CTGGGTAAGTACAGTCCCTC+GGG - Chr6:24662740-24662759 None:intergenic 55.0%
CTTGGTTACGGGAAGAGGCT+GGG + Chr6:24665162-24665181 MsG0680031689.01.T01:intron 55.0%
GAGCGACATGCCGGTGATTT+GGG + Chr6:24662431-24662450 MsG0680031689.01.T01:CDS 55.0%
GCATGTCGCTCATCATCGGT+AGG - Chr6:24662422-24662441 None:intergenic 55.0%
GCCGGTGCAAGAATAGCATG+CGG + Chr6:24664515-24664534 MsG0680031689.01.T01:CDS 55.0%
GGGTTGTCTCCAGGTCTTCA+TGG + Chr6:24662103-24662122 MsG0680031689.01.T01:CDS 55.0%
GTTCAGTAGCCCTTGGCGTA+GGG - Chr6:24661735-24661754 None:intergenic 55.0%
TCAATACACCCCCTACGCCA+AGG + Chr6:24661722-24661741 MsG0680031689.01.T01:intron 55.0%
TCCAACAGCCGAAATTCGGC+TGG - Chr6:24665531-24665550 None:intergenic 55.0%
TCCAGCCGAATTTCGGCTGT+TGG + Chr6:24665527-24665546 MsG0680031689.01.T01:intron 55.0%
TCGGCTGGAGAGACTGCATA+GGG - Chr6:24665516-24665535 None:intergenic 55.0%
TCTTGGTTACGGGAAGAGGC+TGG + Chr6:24665161-24665180 MsG0680031689.01.T01:intron 55.0%
TGAGCGACATGCCGGTGATT+TGG + Chr6:24662430-24662449 MsG0680031689.01.T01:CDS 55.0%
TGTTCAGTAGCCCTTGGCGT+AGG - Chr6:24661736-24661755 None:intergenic 55.0%
TGTTCTCCTCTCGAGGTCTC+AGG + Chr6:24661404-24661423 MsG0680031689.01.T01:intron 55.0%
TTCAGTAGCCCTTGGCGTAG+GGG - Chr6:24661734-24661753 None:intergenic 55.0%
TTCGGCTGGAGAGACTGCAT+AGG - Chr6:24665517-24665536 None:intergenic 55.0%
! ACGGGAAGAGGCTGGGTTTT+GGG + Chr6:24665169-24665188 MsG0680031689.01.T01:intron 55.0%
! GCTCTTGGTGACACCACCAA+TGG + Chr6:24662139-24662158 MsG0680031689.01.T01:CDS 55.0%
! TACGGGAAGAGGCTGGGTTT+TGG + Chr6:24665168-24665187 MsG0680031689.01.T01:intron 55.0%
!! TGGTGGTGTCACCAAGAGCA+TGG - Chr6:24662138-24662157 None:intergenic 55.0%
ATCCGGCTTCGACACTGGAG+AGG - Chr6:24665615-24665634 None:intergenic 60.0%
GGTTGAGCTACGGCACTCGA+AGG + Chr6:24663367-24663386 MsG0680031689.01.T01:intron 60.0%
TCAGTAGCCCTTGGCGTAGG+GGG - Chr6:24661733-24661752 None:intergenic 60.0%
! AGCCTCTCCAGTGTCGAAGC+CGG + Chr6:24665610-24665629 MsG0680031689.01.T01:intron 60.0%
GCTGCTCTCTCCCCCAGACT+AGG + Chr6:24665271-24665290 MsG0680031689.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 24660679 24666136 24660679 ID=MsG0680031689.01;Name=MsG0680031689.01
Chr6 mRNA 24660679 24666136 24660679 ID=MsG0680031689.01.T01;Parent=MsG0680031689.01;Name=MsG0680031689.01.T01;_AED=0.42;_eAED=0.52;_QI=0|0.71|0.75|1|0.71|0.62|8|259|225
Chr6 exon 24660679 24660799 24660679 ID=MsG0680031689.01.T01:exon:15273;Parent=MsG0680031689.01.T01
Chr6 exon 24662071 24662175 24662071 ID=MsG0680031689.01.T01:exon:15274;Parent=MsG0680031689.01.T01
Chr6 exon 24662381 24662476 24662381 ID=MsG0680031689.01.T01:exon:15275;Parent=MsG0680031689.01.T01
Chr6 exon 24662581 24662612 24662581 ID=MsG0680031689.01.T01:exon:15276;Parent=MsG0680031689.01.T01
Chr6 exon 24662955 24663030 24662955 ID=MsG0680031689.01.T01:exon:15277;Parent=MsG0680031689.01.T01
Chr6 exon 24664483 24664554 24664483 ID=MsG0680031689.01.T01:exon:15278;Parent=MsG0680031689.01.T01
Chr6 exon 24664701 24664842 24664701 ID=MsG0680031689.01.T01:exon:15279;Parent=MsG0680031689.01.T01
Chr6 exon 24665844 24666136 24665844 ID=MsG0680031689.01.T01:exon:15280;Parent=MsG0680031689.01.T01
Chr6 CDS 24660679 24660799 24660679 ID=MsG0680031689.01.T01:cds;Parent=MsG0680031689.01.T01
Chr6 CDS 24662071 24662175 24662071 ID=MsG0680031689.01.T01:cds;Parent=MsG0680031689.01.T01
Chr6 CDS 24662381 24662476 24662381 ID=MsG0680031689.01.T01:cds;Parent=MsG0680031689.01.T01
Chr6 CDS 24662581 24662612 24662581 ID=MsG0680031689.01.T01:cds;Parent=MsG0680031689.01.T01
Chr6 CDS 24662955 24663030 24662955 ID=MsG0680031689.01.T01:cds;Parent=MsG0680031689.01.T01
Chr6 CDS 24664483 24664554 24664483 ID=MsG0680031689.01.T01:cds;Parent=MsG0680031689.01.T01
Chr6 CDS 24664701 24664842 24664701 ID=MsG0680031689.01.T01:cds;Parent=MsG0680031689.01.T01
Chr6 CDS 24665844 24665877 24665844 ID=MsG0680031689.01.T01:cds;Parent=MsG0680031689.01.T01
Chr6 three_prime_UTR 24665878 24666136 24665878 ID=MsG0680031689.01.T01:three_prime_utr;Parent=MsG0680031689.01.T01
Gene Sequence

>MsG0680031689.01.T01

AACAGAACAGAACAGAGAGTGTATGAGATGGAAGGTGGAAAGGGAACAGTGAAAGGTGTGGCTCTCATCATCGGAGATAACAACGTTAGAGGTTCTCTTCACTTTGTTCAAGACCCCAATGGGAATTATACACATGTAACTGGAAAAATAACAGGGTTGTCTCCAGGTCTTCATGGATTTCATATCCATGCTCTTGGTGACACCACCAATGGCTGCAACTCCACTGGTCCTCACTTCAATCCACTAAAGAAGGATCACGGAGCTCCTACCGATGATGAGCGACATGCCGGTGATTTGGGTAACATTGTTGCAGGCCCTGATGGAGTTGCTGAGATTTCTATCCGAGATGGAAAGATTCCACTAAGTGGAGTTCATTCCATACTCGGGAGAGCTGTTGTTGTTCATGCCGATCCTGATGATCTTGGAAGAGGTGGACATGAGCTGAGCAAAACTACTGGAAATGCCGGTGCAAGAATAGCATGCGGTAATACTTACATTATTCAACACAGTTTGAGTTTATGTCAGGATGAAAGAACCTCCTTGGCTCATACCATACAACAATTCTGTTGTGAAAGTGACTCAAAATTGGAGAAATTGAAGTTTGCTGAAGCTGTTAAATCGGAGCCCGATTTGGAGAAATCGGAGTATCATTGGACTCCAGTCATCTGTTTAGGATAA

Protein sequence

>MsG0680031689.01.T01

NRTEQRVYEMEGGKGTVKGVALIIGDNNVRGSLHFVQDPNGNYTHVTGKITGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPTDDERHAGDLGNIVAGPDGVAEISIRDGKIPLSGVHSILGRAVVVHADPDDLGRGGHELSKTTGNAGARIACGNTYIIQHSLSLCQDERTSLAHTIQQFCCESDSKLEKLKFAEAVKSEPDLEKSEYHWTPVICLG*