Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012930.01.T01 | XP_003599533.1 | 92.193 | 269 | 20 | 1 | 1 | 268 | 1 | 269 | 3.41E-163 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012930.01.T01 | P09444 | 50 | 272 | 118 | 6 | 1 | 266 | 1 | 260 | 9.49E-61 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012930.01.T01 | G7IZL9 | 92.193 | 269 | 20 | 1 | 1 | 268 | 1 | 269 | 1.63e-163 | 463 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047912.01 | MsG0380012930.01 | 0.808321 | 3.280904e-50 | 1.870240e-47 |
| MsG0180000284.01 | MsG0380012930.01 | 0.821175 | 4.643327e-53 | 3.750171e-50 |
| MsG0180000732.01 | MsG0380012930.01 | 0.802918 | 4.466759e-49 | 2.214975e-46 |
| MsG0180001312.01 | MsG0380012930.01 | 0.801435 | 9.018134e-49 | 4.306354e-46 |
| MsG0180001522.01 | MsG0380012930.01 | 0.911656 | 4.748009e-83 | 1.027938e-78 |
| MsG0180002489.01 | MsG0380012930.01 | 0.823479 | 1.355186e-53 | 1.168200e-50 |
| MsG0180003190.01 | MsG0380012930.01 | 0.804872 | 1.753694e-49 | 9.144892e-47 |
| MsG0180004730.01 | MsG0380012930.01 | 0.815228 | 1.029180e-51 | 7.054671e-49 |
| MsG0180005125.01 | MsG0380012930.01 | 0.823758 | 1.166019e-53 | 1.013198e-50 |
| MsG0180005350.01 | MsG0380012930.01 | 0.817920 | 2.567147e-52 | 1.894442e-49 |
| MsG0180006013.01 | MsG0380012930.01 | 0.802254 | 6.122821e-49 | 2.985235e-46 |
| MsG0180006016.01 | MsG0380012930.01 | 0.822070 | 2.883771e-53 | 2.388288e-50 |
| MsG0280006411.01 | MsG0380012930.01 | 0.821295 | 4.357142e-53 | 3.530632e-50 |
| MsG0380012124.01 | MsG0380012930.01 | 0.832902 | 7.251765e-56 | 8.218390e-53 |
| MsG0380012930.01 | MsG0380013541.01 | 0.814405 | 1.566967e-51 | 1.050527e-48 |
| MsG0380012930.01 | MsG0380014162.01 | -0.803756 | 2.994951e-49 | 1.517397e-46 |
| MsG0380012930.01 | MsG0380014365.01 | 0.806556 | 7.766481e-50 | 4.228258e-47 |
| MsG0380012930.01 | MsG0380014770.01 | 0.813906 | 2.019131e-51 | 1.335398e-48 |
| MsG0380012930.01 | MsG0380014885.01 | 0.801262 | 9.782491e-49 | 4.651122e-46 |
| MsG0380012930.01 | MsG0380017226.01 | 0.813897 | 2.028668e-51 | 1.341411e-48 |
| MsG0380012930.01 | MsG0380017403.01 | 0.800355 | 1.498200e-48 | 6.961573e-46 |
| MsG0380012930.01 | MsG0380018009.01 | 0.809664 | 1.692045e-50 | 9.994818e-48 |
| MsG0380012930.01 | MsG0480020065.01 | 0.822581 | 2.194813e-53 | 1.844710e-50 |
| MsG0380012930.01 | MsG0480020090.01 | 0.821511 | 3.883298e-53 | 3.165602e-50 |
| MsG0380012930.01 | MsG0480020416.01 | 0.805259 | 1.455259e-49 | 7.663426e-47 |
| MsG0380012930.01 | MsG0480020544.01 | 0.801375 | 9.276993e-49 | 4.423279e-46 |
| MsG0380012930.01 | MsG0480020843.01 | 0.811331 | 7.385781e-51 | 4.558684e-48 |
| MsG0380012930.01 | MsG0480021034.01 | 0.819355 | 1.213083e-52 | 9.312721e-50 |
| MsG0380012930.01 | MsG0480021134.01 | 0.829152 | 6.040325e-55 | 6.130351e-52 |
| MsG0380012930.01 | MsG0480021464.01 | 0.810067 | 1.385774e-50 | 8.272474e-48 |
| MsG0380012930.01 | MsG0480021695.01 | 0.808225 | 3.438284e-50 | 1.955040e-47 |
| MsG0380012930.01 | MsG0480021731.01 | 0.806816 | 6.843843e-50 | 3.750959e-47 |
| MsG0380012930.01 | MsG0480022052.01 | -0.820613 | 6.254271e-53 | 4.972285e-50 |
| MsG0380012930.01 | MsG0480022104.01 | 0.835673 | 1.463009e-56 | 1.801721e-53 |
| MsG0380012930.01 | MsG0480022108.01 | 0.844684 | 6.489908e-59 | 1.055886e-55 |
| MsG0380012930.01 | MsG0480022183.01 | 0.810927 | 9.034534e-51 | 5.517885e-48 |
| MsG0380012930.01 | MsG0480023014.01 | 0.802487 | 5.481280e-49 | 2.688300e-46 |
| MsG0380012930.01 | MsG0580024405.01 | 0.805576 | 1.249075e-49 | 6.631598e-47 |
| MsG0380012930.01 | MsG0580025134.01 | 0.830025 | 3.705142e-55 | 3.857167e-52 |
| MsG0380012930.01 | MsG0580025989.01 | 0.800080 | 1.704355e-48 | 7.864164e-46 |
| MsG0380012930.01 | MsG0580026011.01 | 0.801223 | 9.964136e-49 | 4.732792e-46 |
| MsG0380012930.01 | MsG0580027074.01 | 0.800227 | 1.590912e-48 | 7.368124e-46 |
| MsG0380012930.01 | MsG0580027129.01 | 0.801735 | 7.824534e-49 | 3.764754e-46 |
| MsG0380012930.01 | MsG0580027228.01 | 0.807622 | 4.618877e-50 | 2.584963e-47 |
| MsG0380012930.01 | MsG0580028284.01 | 0.814362 | 1.601082e-51 | 1.072101e-48 |
| MsG0380012930.01 | MsG0580028289.01 | 0.804069 | 2.578754e-49 | 1.317119e-46 |
| MsG0380012930.01 | MsG0680030841.01 | 0.806031 | 1.002153e-49 | 5.383282e-47 |
| MsG0380012930.01 | MsG0680031133.01 | 0.803163 | 3.973831e-49 | 1.982931e-46 |
| MsG0380012930.01 | MsG0680032430.01 | 0.831455 | 1.652863e-55 | 1.794646e-52 |
| MsG0380012930.01 | MsG0680033339.01 | 0.805363 | 1.384116e-49 | 7.308631e-47 |
| MsG0380012930.01 | MsG0680033391.01 | 0.816896 | 4.365450e-52 | 3.132265e-49 |
| MsG0380012930.01 | MsG0680034061.01 | 0.823320 | 1.476011e-53 | 1.266604e-50 |
| MsG0380012930.01 | MsG0680034067.01 | 0.804186 | 2.437696e-49 | 1.248739e-46 |
| MsG0380012930.01 | MsG0680035582.01 | 0.802866 | 4.577839e-49 | 2.267086e-46 |
| MsG0380012930.01 | MsG0680035777.01 | 0.826560 | 2.536398e-54 | 2.386939e-51 |
| MsG0380012930.01 | MsG0780039452.01 | 0.825022 | 5.879958e-54 | 5.296708e-51 |
| MsG0380012930.01 | MsG0780039570.01 | 0.818432 | 1.965790e-52 | 1.471352e-49 |
| MsG0380012930.01 | MsG0780040861.01 | 0.832406 | 9.625339e-56 | 1.074866e-52 |
| MsG0380012930.01 | MsG0780040929.01 | 0.805894 | 1.071018e-49 | 5.732984e-47 |
| MsG0380012930.01 | MsG0780041376.01 | 0.804005 | 2.658226e-49 | 1.355469e-46 |
| MsG0380012930.01 | MsG0780041399.01 | 0.806103 | 9.677804e-50 | 5.208142e-47 |
| MsG0380012930.01 | MsG0780041754.01 | 0.807334 | 5.317833e-50 | 2.953988e-47 |
| MsG0380012930.01 | MsG0880041969.01 | 0.823622 | 1.254746e-53 | 1.086033e-50 |
| MsG0380012930.01 | MsG0880042811.01 | 0.828871 | 7.064900e-55 | 7.110371e-52 |
| MsG0380012930.01 | MsG0880043082.01 | 0.819999 | 8.645387e-53 | 6.758039e-50 |
| MsG0380012930.01 | MsG0880043835.01 | 0.813873 | 2.053623e-51 | 1.357015e-48 |
| MsG0380012930.01 | MsG0880044062.01 | -0.845016 | 5.281185e-59 | 8.683137e-56 |
| MsG0380012930.01 | MsG0880044415.01 | 0.808683 | 2.745726e-50 | 1.579940e-47 |
| MsG0380012930.01 | MsG0880045583.01 | 0.801424 | 9.064847e-49 | 4.327426e-46 |
| MsG0380012930.01 | MsG0880045631.01 | 0.834004 | 3.851075e-56 | 4.511163e-53 |
| MsG0380012930.01 | MsG0880045653.01 | 0.825263 | 5.155831e-54 | 4.676302e-51 |
| MsG0380012930.01 | MsG0880046058.01 | 0.802939 | 4.420955e-49 | 2.193386e-46 |
| MsG0380012930.01 | MsG0880047116.01 | 0.806608 | 7.574010e-50 | 4.128755e-47 |
| MsG0380012930.01 | MsG0880047391.01 | 0.817192 | 3.745943e-52 | 2.709562e-49 |
| MsG0380012930.01 | MsG0880047607.01 | 0.838562 | 2.671465e-57 | 3.591706e-54 |
| MsG0380012930.01 | MsG0880047689.01 | -0.812810 | 3.514808e-51 | 2.256591e-48 |
| MsG0380012930.01 | MsG0880047742.01 | 0.808878 | 2.494706e-50 | 1.442888e-47 |
| MsG0280006595.01 | MsG0380012930.01 | 0.804285 | 2.324152e-49 | 1.193652e-46 |
| MsG0280008286.01 | MsG0380012930.01 | 0.851041 | 1.148563e-60 | 2.294862e-57 |
| MsG0280008907.01 | MsG0380012930.01 | 0.842170 | 3.044427e-58 | 4.576995e-55 |
| MsG0280008970.01 | MsG0380012930.01 | 0.810367 | 1.194154e-50 | 7.184582e-48 |
| MsG0280008971.01 | MsG0380012930.01 | 0.810182 | 1.309163e-50 | 7.838176e-48 |
| MsG0280010389.01 | MsG0380012930.01 | 0.815155 | 1.068364e-51 | 7.308637e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012930.01.T01 | MTR_3g034660 | 92.193 | 269 | 20 | 1 | 1 | 268 | 1 | 269 | 4.13e-167 | 463 |
| MsG0380012930.01.T01 | MTR_1g072090 | 49.446 | 271 | 124 | 5 | 1 | 268 | 1 | 261 | 1.06e-68 | 213 |
| MsG0380012930.01.T01 | MTR_1g103620 | 47.191 | 267 | 127 | 5 | 1 | 266 | 1 | 254 | 2.33e-65 | 204 |
| MsG0380012930.01.T01 | MTR_1g072090 | 50.000 | 214 | 99 | 4 | 1 | 211 | 1 | 209 | 6.27e-57 | 182 |
| MsG0380012930.01.T01 | MTR_1g081760 | 41.455 | 275 | 116 | 5 | 1 | 267 | 1 | 238 | 1.15e-40 | 140 |
| MsG0380012930.01.T01 | MTR_2g076230 | 39.416 | 137 | 76 | 3 | 1 | 137 | 43 | 172 | 3.77e-23 | 94.7 |
| MsG0380012930.01.T01 | MTR_2g076230 | 39.416 | 137 | 76 | 3 | 1 | 137 | 43 | 172 | 6.83e-23 | 94.7 |
| MsG0380012930.01.T01 | MTR_2g076220 | 40.336 | 119 | 65 | 2 | 1 | 119 | 1 | 113 | 4.56e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012930.01.T01 | AT3G22500 | 45.113 | 266 | 132 | 5 | 1 | 266 | 1 | 252 | 5.06e-55 | 178 |
| MsG0380012930.01.T01 | AT3G22490 | 42.804 | 271 | 128 | 5 | 5 | 266 | 6 | 258 | 3.69e-54 | 176 |
| MsG0380012930.01.T01 | AT1G03120 | 50.382 | 131 | 60 | 1 | 137 | 267 | 56 | 181 | 1.07e-29 | 110 |
| MsG0380012930.01.T01 | AT5G27980 | 53.465 | 101 | 47 | 0 | 139 | 239 | 68 | 168 | 6.45e-25 | 98.6 |
| MsG0380012930.01.T01 | AT5G53260 | 41.406 | 128 | 70 | 1 | 140 | 267 | 50 | 172 | 4.94e-17 | 77.0 |
| MsG0380012930.01.T01 | AT5G53270 | 42.063 | 126 | 68 | 1 | 140 | 265 | 31 | 151 | 4.42e-16 | 73.9 |
| MsG0380012930.01.T01 | AT1G03120 | 53.333 | 75 | 35 | 0 | 137 | 211 | 56 | 130 | 1.05e-14 | 69.7 |
Find 110 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACTTTGTGCCTATGAATA+TGG | 0.166083 | 3:-27143270 | MsG0380012930.01.T01:CDS |
| AGTTGTAGCCATTGATTTCT+TGG | 0.215063 | 3:-27141436 | MsG0380012930.01.T01:three_prime_UTR |
| CCATGGTTCTTCATGTTTCC+TGG | 0.238117 | 3:+27141590 | None:intergenic |
| CACCGTATTTGATGGGTTCT+TGG | 0.267760 | 3:+27143594 | None:intergenic |
| GTGTGAGGCCTGGCGGTGTC+GGG | 0.275992 | 3:-27143106 | MsG0380012930.01.T01:CDS |
| TGTGTGAGGCCTGGCGGTGT+CGG | 0.283706 | 3:-27143107 | MsG0380012930.01.T01:CDS |
| CTCTCAACAGCCACGCTAAT+GGG | 0.294150 | 3:-27143061 | MsG0380012930.01.T01:CDS |
| ATGGCTGCAGCAGGACTTCC+TGG | 0.305505 | 3:+27143470 | None:intergenic |
| GGCCCATGAAGCTTTGGTTT+TGG | 0.323674 | 3:+27141377 | None:intergenic |
| CCATCAGTGCTGCTGAGATT+AGG | 0.336376 | 3:-27143145 | MsG0380012930.01.T01:CDS |
| GCCATGTTAGCGGCCACTTG+TGG | 0.347945 | 3:+27143527 | None:intergenic |
| TTGGTTGAACGGTAGTTAGC+TGG | 0.354791 | 3:-27141417 | MsG0380012930.01.T01:three_prime_UTR |
| CATCAGTGCTGCTGAGATTA+GGG | 0.357619 | 3:-27143144 | MsG0380012930.01.T01:CDS |
| CCATGTTAGCGGCCACTTGT+GGG | 0.359786 | 3:+27143528 | None:intergenic |
| AAAACTTTCTGATGTGTTAA+CGG | 0.360481 | 3:-27143024 | MsG0380012930.01.T01:intron |
| GCCGCTTGCATGGCTGCAGC+AGG | 0.364075 | 3:+27143461 | None:intergenic |
| TATGTTGGCCCATGAAGCTT+TGG | 0.373622 | 3:+27141371 | None:intergenic |
| CACTTTGTGCCTATGAATAT+GGG | 0.375801 | 3:-27143269 | MsG0380012930.01.T01:CDS |
| GCTCTCAACAGCCACGCTAA+TGG | 0.376316 | 3:-27143062 | MsG0380012930.01.T01:CDS |
| GCCTGGCGGTGTCGGGGCGA+CGG | 0.386365 | 3:-27143099 | MsG0380012930.01.T01:CDS |
| ATGCCAAAACCAAAGCTTCA+TGG | 0.386758 | 3:-27141380 | MsG0380012930.01.T01:three_prime_UTR |
| GCCGTCGCCCCGACACCGCC+AGG | 0.387638 | 3:+27143098 | None:intergenic |
| GAAAACATCACCGTATTTGA+TGG | 0.395353 | 3:+27143586 | None:intergenic |
| CGGATAAGCTGGTGGAGGAC+AGG | 0.403743 | 3:-27141744 | MsG0380012930.01.T01:CDS |
| GTTAATCTCTTCTTGAAGCC+TGG | 0.405950 | 3:+27143616 | None:intergenic |
| GCGGTTGATGGTCAGATTAT+AGG | 0.409172 | 3:-27143314 | MsG0380012930.01.T01:CDS |
| CTTCTTGAAGCCTGGTTGGT+TGG | 0.415684 | 3:+27143624 | None:intergenic |
| GTTGTGACGGAGGCGGTTGA+TGG | 0.427340 | 3:-27143326 | MsG0380012930.01.T01:CDS |
| GAAGCCTGGTTGGTTGGCCA+TGG | 0.430327 | 3:+27143630 | None:intergenic |
| GCCTATGAATATGGGCTTTG+CGG | 0.430604 | 3:-27143261 | MsG0380012930.01.T01:CDS |
| GTTAGAAGTGGCGGGGATAT+CGG | 0.431798 | 3:-27143204 | MsG0380012930.01.T01:CDS |
| TAGAACAGCAATTTCAAACT+AGG | 0.434039 | 3:+27141258 | None:intergenic |
| TAGAACAGCAATTTCAAACT+AGG | 0.434039 | 3:+27141492 | None:intergenic |
| CTGGTTGAGCTTTGCTGTTG+TGG | 0.435708 | 3:+27141609 | None:intergenic |
| ATAGGCACAAAGTGCGCGTC+AGG | 0.451108 | 3:+27143278 | None:intergenic |
| ATCTCTTCTTGAAGCCTGGT+TGG | 0.457290 | 3:+27143620 | None:intergenic |
| GATATCGGTTGGTGATAAAC+CGG | 0.458559 | 3:-27143189 | MsG0380012930.01.T01:CDS |
| GAGCTTTGCTGTTGTGGCCA+TGG | 0.463599 | 3:+27141615 | None:intergenic |
| GATCATTGCGGCCGCTTGCA+TGG | 0.469213 | 3:+27143451 | None:intergenic |
| TCGTCATGGTATAGCAGAAA+TGG | 0.469856 | 3:-27143399 | MsG0380012930.01.T01:CDS |
| TCTTTGGTTGAAGAAGGGTT+TGG | 0.477120 | 3:+27143672 | None:intergenic |
| AATCACATTATTCTATATGT+TGG | 0.480030 | 3:+27141356 | None:intergenic |
| GGAGAGAGGTGTGTGAGGCC+TGG | 0.480169 | 3:-27143116 | MsG0380012930.01.T01:CDS |
| CCCACAAGTGGCCGCTAACA+TGG | 0.487849 | 3:-27143528 | MsG0380012930.01.T01:CDS |
| CCTAATCTCAGCAGCACTGA+TGG | 0.492034 | 3:+27143145 | None:intergenic |
| AACCAAGAACCCATCAAATA+CGG | 0.492643 | 3:-27143596 | MsG0380012930.01.T01:CDS |
| ATAGGATGCGGCGGATAAGC+TGG | 0.493945 | 3:-27141755 | MsG0380012930.01.T01:intron |
| TTCTGCTGCAGCCATGTTAG+CGG | 0.499845 | 3:+27143517 | None:intergenic |
| TCCTGCTGCAGCCATGCAAG+CGG | 0.501385 | 3:-27143462 | MsG0380012930.01.T01:CDS |
| TGGTTGAACGGTAGTTAGCT+GGG | 0.502681 | 3:-27141416 | MsG0380012930.01.T01:three_prime_UTR |
| TGCCAAAACCAAAGCTTCAT+GGG | 0.502813 | 3:-27141379 | MsG0380012930.01.T01:three_prime_UTR |
| GCCGCAAAGCCCATATTCAT+AGG | 0.505709 | 3:+27143260 | None:intergenic |
| CAATGGCTCGTTGGTCGTCA+TGG | 0.509926 | 3:-27143413 | MsG0380012930.01.T01:CDS |
| GGATAAGCTGGTGGAGGACA+GGG | 0.510419 | 3:-27141743 | MsG0380012930.01.T01:CDS |
| TGTGAGGCCTGGCGGTGTCG+GGG | 0.521665 | 3:-27143105 | MsG0380012930.01.T01:CDS |
| AAAACATCACCGTATTTGAT+GGG | 0.527182 | 3:+27143587 | None:intergenic |
| TGGTGGAATAGCTGCATCCA+TGG | 0.532996 | 3:-27141632 | MsG0380012930.01.T01:CDS |
| GGAGAGGCGTTAGAAGTGGC+GGG | 0.533131 | 3:-27143212 | MsG0380012930.01.T01:CDS |
| AGAACAGCAATTTCAAACTA+GGG | 0.533994 | 3:+27141259 | None:intergenic |
| AGAACAGCAATTTCAAACTA+GGG | 0.533994 | 3:+27141493 | None:intergenic |
| AGGCCTCACACACCTCTCTC+CGG | 0.534996 | 3:+27143118 | None:intergenic |
| TGCCGACCGTCGTGTTGTGA+CGG | 0.537709 | 3:-27143339 | MsG0380012930.01.T01:CDS |
| GAAGGGTTTGGAAATTTGAG+TGG | 0.550972 | 3:+27143684 | None:intergenic |
| CCATTGATTTCTTGGTTGAA+CGG | 0.552993 | 3:-27141428 | MsG0380012930.01.T01:three_prime_UTR |
| TCAGCATCGTTCTGATCCAC+CGG | 0.561215 | 3:+27143170 | None:intergenic |
| GTTTGGAAATTTGAGTGGAG+TGG | 0.563850 | 3:+27143689 | None:intergenic |
| GCTGCTGAGATTAGGGCTAC+CGG | 0.568023 | 3:-27143137 | MsG0380012930.01.T01:CDS |
| CCGTTCAACCAAGAAATCAA+TGG | 0.570008 | 3:+27141428 | None:intergenic |
| CATGTTAGCGGCCACTTGTG+GGG | 0.571385 | 3:+27143529 | None:intergenic |
| CTCCGTCACAACACGACGGT+CGG | 0.572167 | 3:+27143337 | None:intergenic |
| CCGTCGTGTTGTGACGGAGG+CGG | 0.578384 | 3:-27143333 | MsG0380012930.01.T01:CDS |
| GCATCTGCACAATGGCTCGT+TGG | 0.578751 | 3:-27143422 | MsG0380012930.01.T01:CDS |
| GATGACGATCCGATCACTAT+CGG | 0.581623 | 3:-27143233 | MsG0380012930.01.T01:CDS |
| CACAACAGCAAAGCTCAACC+AGG | 0.585445 | 3:-27141608 | MsG0380012930.01.T01:CDS |
| AATATTCATCATTTGTTGTG+TGG | 0.590823 | 3:+27141663 | None:intergenic |
| CGGAGAGGCGTTAGAAGTGG+CGG | 0.590961 | 3:-27143213 | MsG0380012930.01.T01:CDS |
| AACGCCTCTCCGATAGTGAT+CGG | 0.591968 | 3:+27143224 | None:intergenic |
| TGCGGCGGATAAGCTGGTGG+AGG | 0.592783 | 3:-27141749 | MsG0380012930.01.T01:CDS |
| TGAGCCATGGCCAACCAACC+AGG | 0.605511 | 3:-27143634 | MsG0380012930.01.T01:CDS |
| TGAGACAATCTCCCCACAAG+TGG | 0.610093 | 3:-27143540 | MsG0380012930.01.T01:CDS |
| GAAGTGGCGGGGATATCGGT+TGG | 0.611879 | 3:-27143200 | MsG0380012930.01.T01:CDS |
| TATCGGAGAGGCGTTAGAAG+TGG | 0.617007 | 3:-27143216 | MsG0380012930.01.T01:CDS |
| ATTAGCGTGGCTGTTGAGAG+CGG | 0.621296 | 3:+27143064 | None:intergenic |
| AGATTAGGGCTACCGGAGAG+AGG | 0.625834 | 3:-27143130 | MsG0380012930.01.T01:CDS |
| TAATTGCAAATAAACTCACT+AGG | 0.625907 | 3:+27141458 | None:intergenic |
| ATGATGAATATTGCTGAACC+TGG | 0.626149 | 3:-27141652 | MsG0380012930.01.T01:CDS |
| ATGGATGCAGCTATTCCACC+AGG | 0.630413 | 3:+27141634 | None:intergenic |
| ATGAATATTGCTGAACCTGG+TGG | 0.635922 | 3:-27141649 | MsG0380012930.01.T01:CDS |
| TAAGCTGGTGGAGGACAGGG+CGG | 0.636080 | 3:-27141740 | MsG0380012930.01.T01:CDS |
| GGTTGAACGGTAGTTAGCTG+GGG | 0.636122 | 3:-27141415 | MsG0380012930.01.T01:three_prime_UTR |
| ATCGGTTGGTGATAAACCGG+TGG | 0.639207 | 3:-27143186 | MsG0380012930.01.T01:CDS |
| AAACACAACACAATGAGCCA+TGG | 0.639243 | 3:-27143647 | MsG0380012930.01.T01:exon |
| CTACCGGAGAGAGGTGTGTG+AGG | 0.640214 | 3:-27143121 | MsG0380012930.01.T01:CDS |
| TGTATATATATAGGATGCGG+CGG | 0.642444 | 3:-27141764 | MsG0380012930.01.T01:intron |
| CGACCGTCGTGTTGTGACGG+AGG | 0.646821 | 3:-27143336 | MsG0380012930.01.T01:CDS |
| TCAGATTATAGGACGGCGCG+TGG | 0.654489 | 3:-27143303 | MsG0380012930.01.T01:CDS |
| TCTCTTCAATCCCATTAGCG+TGG | 0.661736 | 3:+27143051 | None:intergenic |
| AGGAAATTAGTAAAAGACCA+TGG | 0.665507 | 3:+27141573 | None:intergenic |
| TCAACGAGGCATCTGCACAA+TGG | 0.666804 | 3:-27143430 | MsG0380012930.01.T01:CDS |
| AGAAGCTGTGTATGATGCAG+AGG | 0.680635 | 3:-27141701 | MsG0380012930.01.T01:CDS |
| GAGAGGCGTTAGAAGTGGCG+GGG | 0.680725 | 3:-27143211 | MsG0380012930.01.T01:CDS |
| CCAGGAAACATGAAGAACCA+TGG | 0.680740 | 3:-27141590 | MsG0380012930.01.T01:exon |
| AGATGCCTCGTTGATCATTG+CGG | 0.682722 | 3:+27143439 | None:intergenic |
| TTGATGGTCAGATTATAGGA+CGG | 0.688715 | 3:-27143310 | MsG0380012930.01.T01:CDS |
| GAGAGGTGTGTGAGGCCTGG+CGG | 0.694862 | 3:-27143113 | MsG0380012930.01.T01:CDS |
| GGATGCGGCGGATAAGCTGG+TGG | 0.713312 | 3:-27141752 | MsG0380012930.01.T01:CDS |
| CGATCCGATCACTATCGGAG+AGG | 0.731692 | 3:-27143228 | MsG0380012930.01.T01:CDS |
| AGCGGCCGCAATGATCAACG+AGG | 0.739216 | 3:-27143444 | MsG0380012930.01.T01:CDS |
| CCGCCTCCGTCACAACACGA+CGG | 0.744880 | 3:+27143333 | None:intergenic |
| TGTTCGTGTGACAGAAACAA+CGG | 0.764152 | 3:-27143363 | MsG0380012930.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAGTGAAATTGTAATA+TGG | - | Chr3:27142861-27142880 | MsG0380012930.01.T01:intron | 15.0% |
| !! | ATACAAGATTATAATTGATT+AGG | - | Chr3:27141990-27142009 | MsG0380012930.01.T01:intron | 15.0% |
| !! | TAACTAAAATATATGTTGAA+GGG | - | Chr3:27142886-27142905 | MsG0380012930.01.T01:intron | 15.0% |
| !! | TTAACTAAAATATATGTTGA+AGG | - | Chr3:27142885-27142904 | MsG0380012930.01.T01:intron | 15.0% |
| !! | TTTAACTAACTAATCAAAAA+AGG | + | Chr3:27142017-27142036 | None:intergenic | 15.0% |
| !!! | CATGTTATTATTATGTTTTT+TGG | - | Chr3:27142222-27142241 | MsG0380012930.01.T01:intron | 15.0% |
| !!! | CTTATTTTAACAAAACAAAA+AGG | + | Chr3:27143386-27143405 | None:intergenic | 15.0% |
| !! | AATCACATTATTCTATATGT+TGG | + | Chr3:27143583-27143602 | None:intergenic | 20.0% |
| !!! | AAATATTACAAAGTACTCAT+TGG | + | Chr3:27143142-27143161 | None:intergenic | 20.0% |
| !!! | GAGTACTTTGTAATATTTTT+TGG | - | Chr3:27143144-27143163 | MsG0380012930.01.T01:CDS | 20.0% |
| !!! | TACTTTGTAATATTTTTTGG+TGG | - | Chr3:27143147-27143166 | MsG0380012930.01.T01:CDS | 20.0% |
| !!! | TGATTAGTTAGTTAAATACT+TGG | - | Chr3:27142021-27142040 | MsG0380012930.01.T01:intron | 20.0% |
| !!! | TTTATTTTTTAGTGTGTGTT+TGG | - | Chr3:27142376-27142395 | MsG0380012930.01.T01:intron | 20.0% |
| ! | AAAACTTTCTGATGTGTTAA+CGG | - | Chr3:27141912-27141931 | MsG0380012930.01.T01:intron | 25.0% |
| ! | CCATATATAAAGCTACAAAT+TGG | - | Chr3:27142287-27142306 | MsG0380012930.01.T01:intron | 25.0% |
| ! | TAATTGCAAATAAACTCACT+AGG | + | Chr3:27143481-27143500 | None:intergenic | 25.0% |
| ! | TGTAGACTTGAAATTTCATT+TGG | - | Chr3:27142998-27143017 | MsG0380012930.01.T01:intron | 25.0% |
| ! | TGTTTGGTATTATGGATTTA+CGG | - | Chr3:27142392-27142411 | MsG0380012930.01.T01:intron | 25.0% |
| ! | TTAGTTAGTTAAATACTTGG+AGG | - | Chr3:27142024-27142043 | MsG0380012930.01.T01:intron | 25.0% |
| ! | TTGATGAGCAAAATTGATAT+AGG | - | Chr3:27142829-27142848 | MsG0380012930.01.T01:intron | 25.0% |
| !!! | AATATTCATCATTTGTTGTG+TGG | + | Chr3:27143276-27143295 | None:intergenic | 25.0% |
| !!! | ATTGTGTTGTGTTTTTTCTT+TGG | + | Chr3:27141283-27141302 | None:intergenic | 25.0% |
| !!! | CCAATTTGTAGCTTTATATA+TGG | + | Chr3:27142290-27142309 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTGGTTGAAGAA+GGG | + | Chr3:27141272-27141291 | None:intergenic | 25.0% |
| AAAACATCACCGTATTTGAT+GGG | + | Chr3:27141352-27141371 | None:intergenic | 30.0% | |
| AAGCACTTATAGTGAATGTA+AGG | - | Chr3:27142057-27142076 | MsG0380012930.01.T01:intron | 30.0% | |
| AGAACAGCAATTTCAAACTA+GGG | + | Chr3:27143446-27143465 | None:intergenic | 30.0% | |
| AGGAAATTAGTAAAAGACCA+TGG | + | Chr3:27143366-27143385 | None:intergenic | 30.0% | |
| ATGAGCAAAATTGATATAGG+TGG | - | Chr3:27142832-27142851 | MsG0380012930.01.T01:intron | 30.0% | |
| GAAACCATATATAAGCAACT+CGG | - | Chr3:27142599-27142618 | MsG0380012930.01.T01:intron | 30.0% | |
| GATATATAATAACGTGCGTT+TGG | + | Chr3:27142322-27142341 | None:intergenic | 30.0% | |
| GTAGTGTTTGTTTGGTATTA+CGG | - | Chr3:27142658-27142677 | MsG0380012930.01.T01:intron | 30.0% | |
| GTATCAATTTGTCAGAATCT+CGG | + | Chr3:27142765-27142784 | None:intergenic | 30.0% | |
| GTGTGTATATATATAGGATG+CGG | - | Chr3:27143169-27143188 | MsG0380012930.01.T01:CDS | 30.0% | |
| TAGAACAGCAATTTCAAACT+AGG | + | Chr3:27143447-27143466 | None:intergenic | 30.0% | |
| TCTTAGTGTGTTTGGTATTA+TGG | - | Chr3:27142513-27142532 | MsG0380012930.01.T01:intron | 30.0% | |
| TTAGTGTGTGTTTGGTATTA+TGG | - | Chr3:27142384-27142403 | MsG0380012930.01.T01:intron | 30.0% | |
| !! | GTGTAGCTTTTGAAAAATCA+CGG | - | Chr3:27142732-27142751 | MsG0380012930.01.T01:intron | 30.0% |
| !! | TTGGTGGTGTGTATATATAT+AGG | - | Chr3:27143163-27143182 | MsG0380012930.01.T01:CDS | 30.0% |
| !!! | GTTTTTTCTTTGGTTGAAGA+AGG | + | Chr3:27141273-27141292 | None:intergenic | 30.0% |
| AACCAAGAACCCATCAAATA+CGG | - | Chr3:27141340-27141359 | MsG0380012930.01.T01:three_prime_UTR | 35.0% | |
| AAGCAAAGCTAGAATCAAAG+TGG | + | Chr3:27142787-27142806 | None:intergenic | 35.0% | |
| AGTGTGTTTGGTATTATGGT+AGG | - | Chr3:27142517-27142536 | MsG0380012930.01.T01:intron | 35.0% | |
| ATATCAACTTAGTGCGTGTT+TGG | - | Chr3:27142488-27142507 | MsG0380012930.01.T01:intron | 35.0% | |
| ATGATGAATATTGCTGAACC+TGG | - | Chr3:27143284-27143303 | MsG0380012930.01.T01:CDS | 35.0% | |
| CACTTTGTGCCTATGAATAT+GGG | - | Chr3:27141667-27141686 | MsG0380012930.01.T01:CDS | 35.0% | |
| GAAAACATCACCGTATTTGA+TGG | + | Chr3:27141353-27141372 | None:intergenic | 35.0% | |
| GTGTAGCTTCTACAATATCA+CGG | + | Chr3:27142445-27142464 | None:intergenic | 35.0% | |
| GTTTGGTATCTTAGTGTGTT+TGG | - | Chr3:27142505-27142524 | MsG0380012930.01.T01:intron | 35.0% | |
| TCTCTGCTGGAAAATGTAAT+TGG | + | Chr3:27143060-27143079 | None:intergenic | 35.0% | |
| TGGTATTATGGATTTACGGT+GGG | - | Chr3:27142396-27142415 | MsG0380012930.01.T01:intron | 35.0% | |
| TGTATATATATAGGATGCGG+CGG | - | Chr3:27143172-27143191 | MsG0380012930.01.T01:CDS | 35.0% | |
| TTGGTATCGTAGTGTTTGTT+TGG | - | Chr3:27142650-27142669 | MsG0380012930.01.T01:intron | 35.0% | |
| TTGGTATTATGGATTTACGG+TGG | - | Chr3:27142395-27142414 | MsG0380012930.01.T01:intron | 35.0% | |
| ! | ACCTAGTTAGTACTCTTTTG+CGG | + | Chr3:27143097-27143116 | None:intergenic | 35.0% |
| ! | CAGCAGAATTCAACGTTTTA+GGG | - | Chr3:27141434-27141453 | MsG0380012930.01.T01:three_prime_UTR | 35.0% |
| ! | TAAGTGTCTGTTCGTTTTAG+TGG | + | Chr3:27142348-27142367 | None:intergenic | 35.0% |
| ! | TTGATGGTCAGATTATAGGA+CGG | - | Chr3:27141626-27141645 | MsG0380012930.01.T01:CDS | 35.0% |
| !! | AGTTGTAGCCATTGATTTCT+TGG | - | Chr3:27143500-27143519 | MsG0380012930.01.T01:CDS | 35.0% |
| !! | ATATATAAGCAACTCGGTGT+CGG | - | Chr3:27142605-27142624 | MsG0380012930.01.T01:intron | 35.0% |
| !! | CCATTGATTTCTTGGTTGAA+CGG | - | Chr3:27143508-27143527 | MsG0380012930.01.T01:CDS | 35.0% |
| AAACACAACACAATGAGCCA+TGG | - | Chr3:27141289-27141308 | MsG0380012930.01.T01:three_prime_UTR | 40.0% | |
| ACGACAGATAACTGTGATTC+TGG | + | Chr3:27142692-27142711 | None:intergenic | 40.0% | |
| ACGGTAGATGACCGTAATTA+TGG | + | Chr3:27142426-27142445 | None:intergenic | 40.0% | |
| ATGAATATTGCTGAACCTGG+TGG | - | Chr3:27143287-27143306 | MsG0380012930.01.T01:CDS | 40.0% | |
| ATGCCAAAACCAAAGCTTCA+TGG | - | Chr3:27143556-27143575 | MsG0380012930.01.T01:CDS | 40.0% | |
| CCGTTCAACCAAGAAATCAA+TGG | + | Chr3:27143511-27143530 | None:intergenic | 40.0% | |
| CGGTGGGTATACCATAATTA+CGG | - | Chr3:27142412-27142431 | MsG0380012930.01.T01:intron | 40.0% | |
| CTTTCATGACTAATCTCTGC+TGG | + | Chr3:27143073-27143092 | None:intergenic | 40.0% | |
| GAAGGGTTTGGAAATTTGAG+TGG | + | Chr3:27141255-27141274 | None:intergenic | 40.0% | |
| GACACCGAGTTGCTTATATA+TGG | + | Chr3:27142606-27142625 | None:intergenic | 40.0% | |
| GAGTACTAACTAGGTTGTCT+AGG | - | Chr3:27143102-27143121 | MsG0380012930.01.T01:CDS | 40.0% | |
| GCACTTTGTGCCTATGAATA+TGG | - | Chr3:27141666-27141685 | MsG0380012930.01.T01:CDS | 40.0% | |
| GTTAATCTCTTCTTGAAGCC+TGG | + | Chr3:27141323-27141342 | None:intergenic | 40.0% | |
| TCGTCATGGTATAGCAGAAA+TGG | - | Chr3:27141537-27141556 | MsG0380012930.01.T01:three_prime_UTR | 40.0% | |
| TCTTTGGTTGAAGAAGGGTT+TGG | + | Chr3:27141267-27141286 | None:intergenic | 40.0% | |
| TGCCAAAACCAAAGCTTCAT+GGG | - | Chr3:27143557-27143576 | MsG0380012930.01.T01:CDS | 40.0% | |
| TGTTCGTGTGACAGAAACAA+CGG | - | Chr3:27141573-27141592 | MsG0380012930.01.T01:three_prime_UTR | 40.0% | |
| ! | GCAGCAGAATTCAACGTTTT+AGG | - | Chr3:27141433-27141452 | MsG0380012930.01.T01:three_prime_UTR | 40.0% |
| ! | GTGTTGGTACTCAGTGTATT+TGG | - | Chr3:27142631-27142650 | MsG0380012930.01.T01:intron | 40.0% |
| !! | GATATCGGTTGGTGATAAAC+CGG | - | Chr3:27141747-27141766 | MsG0380012930.01.T01:CDS | 40.0% |
| !! | TCCGCAAAAGAGTACTAACT+AGG | - | Chr3:27143093-27143112 | MsG0380012930.01.T01:CDS | 40.0% |
| !! | TGTCTGTTCGTTTTAGTGGT+AGG | + | Chr3:27142344-27142363 | None:intergenic | 40.0% |
| AGAAGCTGTGTATGATGCAG+AGG | - | Chr3:27143235-27143254 | MsG0380012930.01.T01:CDS | 45.0% | |
| AGATGCCTCGTTGATCATTG+CGG | + | Chr3:27141500-27141519 | None:intergenic | 45.0% | |
| ATCTCTTCTTGAAGCCTGGT+TGG | + | Chr3:27141319-27141338 | None:intergenic | 45.0% | |
| CCAGGAAACATGAAGAACCA+TGG | - | Chr3:27143346-27143365 | MsG0380012930.01.T01:CDS | 45.0% | |
| CCATGGTTCTTCATGTTTCC+TGG | + | Chr3:27143349-27143368 | None:intergenic | 45.0% | |
| GATGACGATCCGATCACTAT+CGG | - | Chr3:27141703-27141722 | MsG0380012930.01.T01:CDS | 45.0% | |
| GCCTATGAATATGGGCTTTG+CGG | - | Chr3:27141675-27141694 | MsG0380012930.01.T01:CDS | 45.0% | |
| TATGTTGGCCCATGAAGCTT+TGG | + | Chr3:27143568-27143587 | None:intergenic | 45.0% | |
| TCTCTTCAATCCCATTAGCG+TGG | + | Chr3:27141888-27141907 | None:intergenic | 45.0% | |
| TGGTAGGTATGCCAGAATCA+CGG | - | Chr3:27142533-27142552 | MsG0380012930.01.T01:intron | 45.0% | |
| TGGTTGAACGGTAGTTAGCT+GGG | - | Chr3:27143520-27143539 | MsG0380012930.01.T01:CDS | 45.0% | |
| TTGGTTGAACGGTAGTTAGC+TGG | - | Chr3:27143519-27143538 | MsG0380012930.01.T01:CDS | 45.0% | |
| ! | CATCAGTGCTGCTGAGATTA+GGG | - | Chr3:27141792-27141811 | MsG0380012930.01.T01:intron | 45.0% |
| ! | GGTGATGTTTTCAACGTCTC+TGG | - | Chr3:27141361-27141380 | MsG0380012930.01.T01:three_prime_UTR | 45.0% |
| !! | CACCGTATTTGATGGGTTCT+TGG | + | Chr3:27141345-27141364 | None:intergenic | 45.0% |
| !! | GCGGTTGATGGTCAGATTAT+AGG | - | Chr3:27141622-27141641 | MsG0380012930.01.T01:CDS | 45.0% |
| AACGCCTCTCCGATAGTGAT+CGG | + | Chr3:27141715-27141734 | None:intergenic | 50.0% | |
| ACGACAGATGACCGTGATTC+TGG | + | Chr3:27142547-27142566 | None:intergenic | 50.0% | |
| ATGGATGCAGCTATTCCACC+AGG | + | Chr3:27143305-27143324 | None:intergenic | 50.0% | |
| ATTAGCGTGGCTGTTGAGAG+CGG | + | Chr3:27141875-27141894 | None:intergenic | 50.0% | |
| CACAACAGCAAAGCTCAACC+AGG | - | Chr3:27143328-27143347 | MsG0380012930.01.T01:CDS | 50.0% | |
| CTCTCAACAGCCACGCTAAT+GGG | - | Chr3:27141875-27141894 | MsG0380012930.01.T01:intron | 50.0% | |
| CTTCTTGAAGCCTGGTTGGT+TGG | + | Chr3:27141315-27141334 | None:intergenic | 50.0% | |
| GCCGCAAAGCCCATATTCAT+AGG | + | Chr3:27141679-27141698 | None:intergenic | 50.0% | |
| GGTTGAACGGTAGTTAGCTG+GGG | - | Chr3:27143521-27143540 | MsG0380012930.01.T01:CDS | 50.0% | |
| TCAGCATCGTTCTGATCCAC+CGG | + | Chr3:27141769-27141788 | None:intergenic | 50.0% | |
| TGAGACAATCTCCCCACAAG+TGG | - | Chr3:27141396-27141415 | MsG0380012930.01.T01:three_prime_UTR | 50.0% | |
| TGGTGGAATAGCTGCATCCA+TGG | - | Chr3:27143304-27143323 | MsG0380012930.01.T01:CDS | 50.0% | |
| TTCTGCTGCAGCCATGTTAG+CGG | + | Chr3:27141422-27141441 | None:intergenic | 50.0% | |
| ! | CCATCAGTGCTGCTGAGATT+AGG | - | Chr3:27141791-27141810 | MsG0380012930.01.T01:intron | 50.0% |
| ! | CCTAATCTCAGCAGCACTGA+TGG | + | Chr3:27141794-27141813 | None:intergenic | 50.0% |
| ! | GTTAGAAGTGGCGGGGATAT+CGG | - | Chr3:27141732-27141751 | MsG0380012930.01.T01:CDS | 50.0% |
| ! | TCAACGAGGCATCTGCACAA+TGG | - | Chr3:27141506-27141525 | MsG0380012930.01.T01:three_prime_UTR | 50.0% |
| !! | ATCGGTTGGTGATAAACCGG+TGG | - | Chr3:27141750-27141769 | MsG0380012930.01.T01:CDS | 50.0% |
| !! | CTGGTTGAGCTTTGCTGTTG+TGG | + | Chr3:27143330-27143349 | None:intergenic | 50.0% |
| !! | GGCCCATGAAGCTTTGGTTT+TGG | + | Chr3:27143562-27143581 | None:intergenic | 50.0% |
| !! | TATCGGAGAGGCGTTAGAAG+TGG | - | Chr3:27141720-27141739 | MsG0380012930.01.T01:CDS | 50.0% |
| !!! | GTTTTAGGGCATGCACAACC+AGG | - | Chr3:27141448-27141467 | MsG0380012930.01.T01:three_prime_UTR | 50.0% |
| AGATTAGGGCTACCGGAGAG+AGG | - | Chr3:27141806-27141825 | MsG0380012930.01.T01:intron | 55.0% | |
| ATAGGATGCGGCGGATAAGC+TGG | - | Chr3:27143181-27143200 | MsG0380012930.01.T01:CDS | 55.0% | |
| ATAGGCACAAAGTGCGCGTC+AGG | + | Chr3:27141661-27141680 | None:intergenic | 55.0% | |
| CAATGGCTCGTTGGTCGTCA+TGG | - | Chr3:27141523-27141542 | MsG0380012930.01.T01:three_prime_UTR | 55.0% | |
| CATGTTAGCGGCCACTTGTG+GGG | + | Chr3:27141410-27141429 | None:intergenic | 55.0% | |
| CCATGTTAGCGGCCACTTGT+GGG | + | Chr3:27141411-27141430 | None:intergenic | 55.0% | |
| CGATCCGATCACTATCGGAG+AGG | - | Chr3:27141708-27141727 | MsG0380012930.01.T01:CDS | 55.0% | |
| GCATCTGCACAATGGCTCGT+TGG | - | Chr3:27141514-27141533 | MsG0380012930.01.T01:three_prime_UTR | 55.0% | |
| GCTCTCAACAGCCACGCTAA+TGG | - | Chr3:27141874-27141893 | MsG0380012930.01.T01:intron | 55.0% | |
| GCTGCTGAGATTAGGGCTAC+CGG | - | Chr3:27141799-27141818 | MsG0380012930.01.T01:intron | 55.0% | |
| GGATAAGCTGGTGGAGGACA+GGG | - | Chr3:27143193-27143212 | MsG0380012930.01.T01:CDS | 55.0% | |
| TCAGATTATAGGACGGCGCG+TGG | - | Chr3:27141633-27141652 | MsG0380012930.01.T01:CDS | 55.0% | |
| !! | AACTCGGTGTCGGTGTGTGT+TGG | - | Chr3:27142615-27142634 | MsG0380012930.01.T01:intron | 55.0% |
| !! | GAGCTTTGCTGTTGTGGCCA+TGG | + | Chr3:27143324-27143343 | None:intergenic | 55.0% |
| AGCGGCCGCAATGATCAACG+AGG | - | Chr3:27141492-27141511 | MsG0380012930.01.T01:three_prime_UTR | 60.0% | |
| AGGCCTCACACACCTCTCTC+CGG | + | Chr3:27141821-27141840 | None:intergenic | 60.0% | |
| ATGGCTGCAGCAGGACTTCC+TGG | + | Chr3:27141469-27141488 | None:intergenic | 60.0% | |
| CCCACAAGTGGCCGCTAACA+TGG | - | Chr3:27141408-27141427 | MsG0380012930.01.T01:three_prime_UTR | 60.0% | |
| CGGATAAGCTGGTGGAGGAC+AGG | - | Chr3:27143192-27143211 | MsG0380012930.01.T01:CDS | 60.0% | |
| CTCCGTCACAACACGACGGT+CGG | + | Chr3:27141602-27141621 | None:intergenic | 60.0% | |
| GATCATTGCGGCCGCTTGCA+TGG | + | Chr3:27141488-27141507 | None:intergenic | 60.0% | |
| GCCATGTTAGCGGCCACTTG+TGG | + | Chr3:27141412-27141431 | None:intergenic | 60.0% | |
| TAAGCTGGTGGAGGACAGGG+CGG | - | Chr3:27143196-27143215 | MsG0380012930.01.T01:CDS | 60.0% | |
| TCCTGCTGCAGCCATGCAAG+CGG | - | Chr3:27141474-27141493 | MsG0380012930.01.T01:three_prime_UTR | 60.0% | |
| TGAGCCATGGCCAACCAACC+AGG | - | Chr3:27141302-27141321 | MsG0380012930.01.T01:three_prime_UTR | 60.0% | |
| TGCCGACCGTCGTGTTGTGA+CGG | - | Chr3:27141597-27141616 | MsG0380012930.01.T01:exon | 60.0% | |
| ! | CTACCGGAGAGAGGTGTGTG+AGG | - | Chr3:27141815-27141834 | MsG0380012930.01.T01:intron | 60.0% |
| ! | GAAGCCTGGTTGGTTGGCCA+TGG | + | Chr3:27141309-27141328 | None:intergenic | 60.0% |
| ! | GAAGTGGCGGGGATATCGGT+TGG | - | Chr3:27141736-27141755 | MsG0380012930.01.T01:CDS | 60.0% |
| ! | GTTGTGACGGAGGCGGTTGA+TGG | - | Chr3:27141610-27141629 | MsG0380012930.01.T01:CDS | 60.0% |
| !! | CGGAGAGGCGTTAGAAGTGG+CGG | - | Chr3:27141723-27141742 | MsG0380012930.01.T01:CDS | 60.0% |
| !! | GAGAGGCGTTAGAAGTGGCG+GGG | - | Chr3:27141725-27141744 | MsG0380012930.01.T01:CDS | 60.0% |
| !! | GGAGAGGCGTTAGAAGTGGC+GGG | - | Chr3:27141724-27141743 | MsG0380012930.01.T01:CDS | 60.0% |
| CCGCCTCCGTCACAACACGA+CGG | + | Chr3:27141606-27141625 | None:intergenic | 65.0% | |
| CGACCGTCGTGTTGTGACGG+AGG | - | Chr3:27141600-27141619 | MsG0380012930.01.T01:CDS | 65.0% | |
| GGATGCGGCGGATAAGCTGG+TGG | - | Chr3:27143184-27143203 | MsG0380012930.01.T01:CDS | 65.0% | |
| TGCGGCGGATAAGCTGGTGG+AGG | - | Chr3:27143187-27143206 | MsG0380012930.01.T01:CDS | 65.0% | |
| TGTGTGAGGCCTGGCGGTGT+CGG | - | Chr3:27141829-27141848 | MsG0380012930.01.T01:intron | 65.0% | |
| ! | CCGTCGTGTTGTGACGGAGG+CGG | - | Chr3:27141603-27141622 | MsG0380012930.01.T01:CDS | 65.0% |
| ! | GAGAGGTGTGTGAGGCCTGG+CGG | - | Chr3:27141823-27141842 | MsG0380012930.01.T01:intron | 65.0% |
| ! | GGAGAGAGGTGTGTGAGGCC+TGG | - | Chr3:27141820-27141839 | MsG0380012930.01.T01:intron | 65.0% |
| GCCGCTTGCATGGCTGCAGC+AGG | + | Chr3:27141478-27141497 | None:intergenic | 70.0% | |
| GTGTGAGGCCTGGCGGTGTC+GGG | - | Chr3:27141830-27141849 | MsG0380012930.01.T01:intron | 70.0% | |
| ! | TGTGAGGCCTGGCGGTGTCG+GGG | - | Chr3:27141831-27141850 | MsG0380012930.01.T01:intron | 70.0% |
| !! | GCCTGGCGGTGTCGGGGCGA+CGG | - | Chr3:27141837-27141856 | MsG0380012930.01.T01:intron | 80.0% |
| ! | GCCGTCGCCCCGACACCGCC+AGG | + | Chr3:27141841-27141860 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 27141249 | 27143709 | 27141249 | ID=MsG0380012930.01;Name=MsG0380012930.01 |
| Chr3 | mRNA | 27141249 | 27143709 | 27141249 | ID=MsG0380012930.01.T01;Parent=MsG0380012930.01;Name=MsG0380012930.01.T01;_AED=0.49;_eAED=0.49;_QI=52|1|1|1|1|1|2|351|268 |
| Chr3 | exon | 27141249 | 27141773 | 27141249 | ID=MsG0380012930.01.T01:exon:14304;Parent=MsG0380012930.01.T01 |
| Chr3 | exon | 27143025 | 27143709 | 27143025 | ID=MsG0380012930.01.T01:exon:14303;Parent=MsG0380012930.01.T01 |
| Chr3 | five_prime_UTR | 27143658 | 27143709 | 27143658 | ID=MsG0380012930.01.T01:five_prime_utr;Parent=MsG0380012930.01.T01 |
| Chr3 | CDS | 27143025 | 27143657 | 27143025 | ID=MsG0380012930.01.T01:cds;Parent=MsG0380012930.01.T01 |
| Chr3 | CDS | 27141600 | 27141773 | 27141600 | ID=MsG0380012930.01.T01:cds;Parent=MsG0380012930.01.T01 |
| Chr3 | three_prime_UTR | 27141249 | 27141599 | 27141249 | ID=MsG0380012930.01.T01:three_prime_utr;Parent=MsG0380012930.01.T01 |
| Gene Sequence |
| Protein sequence |
