AlfalfaGEDB | MsG0480022108.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022108.01

KEGG: -
GO: GO:0005515
PFAM: PF00240

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022108.01.T01	CDP08561.1	94.681	282	0	1	1	267	360	641	0	522
MsG0480022108.01.T01	CDP08561.1	87.213	305	1	1	1	267	132	436	1.92E-176	511
MsG0480022108.01.T01	CDP08561.1	76.066	305	1	2	1	267	90	360	5.93E-143	426
MsG0480022108.01.T01	CDP08561.1	65.574	244	10	3	62	267	77	284	5.44E-85	276

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022108.01.T01	P0CG84	87.541	305	0	1	1	267	73	377	0	514

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022108.01.T01	A0A068UJB0	94.681	282	0	1	1	267	360	641	0.0	522

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047825.01	MsG0480022108.01	0.810979	8.802634e-51	5.384000e-48
MsG0080047912.01	MsG0480022108.01	0.820536	6.514389e-53	5.168447e-50
MsG0080048058.01	MsG0480022108.01	0.822575	2.201034e-53	1.849679e-50
MsG0080048178.01	MsG0480022108.01	0.813157	2.950335e-51	1.911857e-48
MsG0080048383.01	MsG0480022108.01	0.808023	3.795618e-50	2.146659e-47
MsG0080048765.01	MsG0480022108.01	0.810241	1.270923e-50	7.621315e-48
MsG0080048830.01	MsG0480022108.01	0.801059	1.076611e-48	5.092820e-46
MsG0180000001.01	MsG0480022108.01	0.817515	3.168440e-52	2.312374e-49
MsG0180000101.01	MsG0480022108.01	0.838282	3.154830e-57	4.204969e-54
MsG0180000197.01	MsG0480022108.01	0.827313	1.676191e-54	1.612410e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0480022108.01.T01	MTR_4g080797	87.541	305	0	1	1	267	77	381	514
MsG0480022108.01.T01	MTR_4g080797	87.213	305	1	1	1	267	1	305	511
MsG0480022108.01.T01	MTR_8g018230	87.541	305	0	1	1	267	229	533	514
MsG0480022108.01.T01	MTR_8g018230	87.213	305	1	1	1	267	1	305	511
MsG0480022108.01.T01	MTR_8g018230	87.541	305	0	1	1	267	153	457	514
MsG0480022108.01.T01	MTR_8g018230	87.213	305	1	1	1	267	1	305	511
MsG0480022108.01.T01	MTR_8g018230	87.541	305	0	1	1	267	153	457	514
MsG0480022108.01.T01	MTR_8g018230	87.213	305	1	1	1	267	1	305	511
MsG0480022108.01.T01	MTR_8g018230	87.541	305	0	1	1	267	77	381	514
MsG0480022108.01.T01	MTR_8g018230	87.213	305	1	1	1	267	1	305	511

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0480022108.01.T01	AT4G05320	87.541	305	0	1	1	267	77	381	514
MsG0480022108.01.T01	AT4G05320	87.213	305	1	1	1	267	1	305	511
MsG0480022108.01.T01	AT4G05320	87.541	305	0	1	1	267	153	457	514
MsG0480022108.01.T01	AT4G05320	87.213	305	1	1	1	267	1	305	511
MsG0480022108.01.T01	AT4G05320	87.541	305	0	1	1	267	77	381	514
MsG0480022108.01.T01	AT4G05320	87.213	305	1	1	1	267	1	305	511
MsG0480022108.01.T01	AT4G05320	87.541	305	0	1	1	267	153	457	514
MsG0480022108.01.T01	AT4G05320	87.213	305	1	1	1	267	1	305	511
MsG0480022108.01.T01	AT4G05320	87.541	305	0	1	1	267	1	305	514
MsG0480022108.01.T01	AT4G05320	87.541	305	0	1	1	267	77	381	514

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Find 88 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAGCCTCTGCTGATC+TGG	0.304914	4:-68354382	None:intergenic
AAAATTAGTCTCTGCTGGTC+TGG	0.443739	4:-68354154	None:intergenic
AAATAAGCCTCTGCTGATCT+GGG	0.465164	4:-68354381	None:intergenic
AACACACTTAGAAGCCACCA+CGG	0.699059	4:-68354489	None:intergenic
AAGATAAGCCTCTGCTGATC+AGG	0.398269	4:-68353699	None:intergenic
AAGATAAGCCTCTGCTGATC+AGG	0.404708	4:-68353927	None:intergenic
AATAAGCCTCTGCTGATCTG+GGG	0.611344	4:-68354380	None:intergenic
AATGAAGGGTAGATTCCTTC+TGG	0.382623	4:-68353770	None:intergenic
AATGAAGGGTGGATTCCTTC+TGG	0.393830	4:-68353998	None:intergenic
AATGCAAAGTAGATTCCTTC+TGG	0.349783	4:-68354225	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAATGTCAAGGCAAAATTC+AGG	+	Chr4:68354114-68354133	MsG0480022108.01.T01:intron	30.0%
ATCTTTGTGAAAACATTGAC+TGG	+	Chr4:68353594-68353613	MsG0480022108.01.T01:CDS	30.0%
GAAAGCAAAGATACAAGATA+AGG	+	Chr4:68354348-68354367	MsG0480022108.01.T01:CDS	30.0%
AATGCAAAGTAGATTCCTTC+TGG	-	Chr4:68354228-68354247	None:intergenic	35.0%
AGCAAAGATACAAGATAAGG+AGG	+	Chr4:68354351-68354370	MsG0480022108.01.T01:CDS	35.0%
AGCTGATTATAACATCCAGA+AGG	+	Chr4:68353755-68353774	MsG0480022108.01.T01:CDS	35.0%
AGGCAAAATTCAGGATAAAG+AGG	+	Chr4:68354123-68354142	MsG0480022108.01.T01:intron	35.0%
ATATTCGTCAAGACTTTGAC+CGG	+	Chr4:68353822-68353841	MsG0480022108.01.T01:CDS	35.0%
ATATTTGTGAAGACGCTTAC+TGG	+	Chr4:68354277-68354296	MsG0480022108.01.T01:CDS	35.0%
CAATCTAAGCACCAAATGAA+GGG	-	Chr4:68353787-68353806	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	68353588	68354504	68353588	ID=MsG0480022108.01;Name=MsG0480022108.01
Chr4	mRNA	68353588	68354504	68353588	ID=MsG0480022108.01.T01;Parent=MsG0480022108.01;Name=MsG0480022108.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|2\|0\|267
Chr4	exon	68353588	68354022	68353588	ID=MsG0480022108.01.T01:exon:4937;Parent=MsG0480022108.01.T01
Chr4	exon	68354136	68354504	68354136	ID=MsG0480022108.01.T01:exon:4938;Parent=MsG0480022108.01.T01
Chr4	CDS	68353588	68354022	68353588	ID=MsG0480022108.01.T01:cds;Parent=MsG0480022108.01.T01
Chr4	CDS	68354136	68354504	68354136	ID=MsG0480022108.01.T01:cds;Parent=MsG0480022108.01.T01

Gene Sequence

>MsG0480022108.01.T01

ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAATCATCGGATACAATTGATAATGTCAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCTGATCAGCAGAGGCTTATCTTTGCTGGGAAACAACTCGAGGATGGAAGAACCCTAGCTGATTATAACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAGATATTCGTCAAGACTTTGACCGGAAAAACCATCACCCTAGAGGTTGAATCCTCGGATACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGTATCCCACCTGATCAGCAGAGGCTTATCTTTGCAGGGAAACAACTAGAAGATGGAAGGACCCTAGCTGATTATAACATCCAGAAGGAATCCACCCTTCATTTGGATAAAGAGGGCATTCCTCCAGACCAGCAGAGACTAATTTTTGCCGGAAAGCAATTGGAGGATGGTCGTACTTTGGCTGATTATAATATCCAGAAGGAATCTACTTTGCATTTGGTTTTGAGGCTTCGTGGTGGCATGCAAATATTTGTGAAGACGCTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCTGATACTATTGATAATGTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTACAATATTCAGAAAGAATCTACCCTGCATCTTGTTCTTCGTCTCCGTGGTGGCTTCTAA

Protein sequence

>MsG0480022108.01.T01

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*