AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026011.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026011.01.T01 MTR_5g037600 78.395 162 10 5 175 311 46 207 1.45e-71 226
MsG0580026011.01.T01 MTR_5g037540 46.512 258 37 4 1 157 191 448 2.20e-57 194
MsG0580026011.01.T01 MTR_5g037540 45.736 258 39 4 1 157 191 448 2.36e-55 189
MsG0580026011.01.T01 MTR_8g061880 39.691 194 59 4 22 157 270 463 6.44e-32 126
MsG0580026011.01.T01 MTR_8g469980 43.651 126 23 1 69 146 762 887 4.85e-24 103
MsG0580026011.01.T01 MTR_0785s0010 70.588 51 15 0 107 157 1 51 1.22e-19 81.6
MsG0580026011.01.T01 MTR_8g469800 69.643 56 17 0 102 157 22 77 1.60e-19 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026011.01.T01 AT2G02590 57.143 112 26 2 207 300 96 203 1.76e-30 119
MsG0580026011.01.T01 AT3G28630 32.400 250 65 7 10 156 30 278 2.76e-22 96.3
MsG0580026011.01.T01 AT3G01311 33.862 189 71 8 19 158 50 233 3.23e-19 87.0
MsG0580026011.01.T01 AT3G01311 40.650 123 38 4 70 158 112 233 4.63e-19 86.3
MsG0580026011.01.T01 AT3G28630 36.879 141 36 4 10 97 30 170 3.44e-18 84.7
MsG0580026011.01.T01 AT1G69890 33.333 135 44 1 69 157 111 245 1.03e-17 82.8
MsG0580026011.01.T01 AT1G59710 40.698 86 41 2 22 97 54 139 7.73e-13 67.4
MsG0580026011.01.T01 AT1G59710 40.698 86 41 2 22 97 54 139 1.13e-12 68.6
MsG0580026011.01.T01 AT1G59710 40.698 86 41 2 22 97 54 139 1.47e-12 67.8
MsG0580026011.01.T01 AT1G27100 50.000 54 27 0 104 157 430 483 9.04e-11 63.5

Find 101 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTCTTCTACTGAATATT+TGG 0.108998 5:+29051000 MsG0580026011.01.T01:CDS
AACCGGTGAAATTTGCTTTA+TGG 0.134416 5:+29051065 MsG0580026011.01.T01:CDS
TCTATTAAAGCTTCTGGATT+TGG 0.217539 5:+29051169 MsG0580026011.01.T01:CDS
ACCGGTGAAATTTGCTTTAT+GGG 0.236875 5:+29051066 MsG0580026011.01.T01:CDS
TTTCTGGGCTTCTATGTCTT+TGG 0.238302 5:+29051093 MsG0580026011.01.T01:CDS
GTTGATTCTATTAAAGCTTC+TGG 0.241292 5:+29051163 MsG0580026011.01.T01:CDS
AGGAAGATGCAAATCGTTTC+AGG 0.276147 5:-29053135 None:intergenic
GTGCTATTCCTGTTGGTTAT+TGG 0.278826 5:+29051283 MsG0580026011.01.T01:CDS
TTGACTGTGTTATCCATTCT+TGG 0.283384 5:+29051327 MsG0580026011.01.T01:CDS
CAGTAGAAGAAGCTTTGATT+TGG 0.312411 5:-29050991 None:intergenic
CATGCTCCTGTGCCGGGAAA+TGG 0.317933 5:-29053275 None:intergenic
TTGCGAATTCGTTGAGGAAA+TGG 0.327474 5:+29051200 MsG0580026011.01.T01:CDS
ACACGAACACCATCCCTTAC+AGG 0.328669 5:-29047705 None:intergenic
TGAGGAAGAGACAGGGTTAG+AGG 0.334303 5:+29048791 MsG0580026011.01.T01:CDS
ATCAAGAATTGATGCTATAA+TGG 0.343663 5:-29053306 None:intergenic
AGGCCATGTGTTGCAAAATC+TGG 0.354532 5:-29049533 None:intergenic
CTGTTGAATGGGAGCCTGTA+AGG 0.358269 5:+29047691 MsG0580026011.01.T01:intron
AGGTGTGCAGGGATATTCTT+TGG 0.376870 5:+29048728 MsG0580026011.01.T01:CDS
TGACTGTGTTATCCATTCTT+GGG 0.388509 5:+29051328 MsG0580026011.01.T01:CDS
CATTCCGCTTCGAAGCTTGT+TGG 0.389295 5:-29047402 None:intergenic
TCCAGACCATGCTCCTGTGC+CGG 0.392040 5:-29053282 None:intergenic
ATGCTCCTGTGCCGGGAAAT+GGG 0.403767 5:-29053274 None:intergenic
CCCGGCACAGGAGCATGGTC+TGG 0.407604 5:+29053281 MsG0580026011.01.T01:CDS
GATGCTAATGCTGCTGCTGC+TGG 0.414009 5:+29051136 MsG0580026011.01.T01:CDS
ATTCCGCTTCGAAGCTTGTT+GGG 0.414117 5:-29047401 None:intergenic
TTTGTCGCTGTCCCATTTCC+CGG 0.418212 5:+29053263 MsG0580026011.01.T01:CDS
GATAACACAGTCAAACTTGC+AGG 0.422917 5:-29051318 None:intergenic
TAGGACTGTTACTCAGGATT+GGG 0.427974 5:+29047814 MsG0580026011.01.T01:CDS
AGTAGAAGAAGCTTTGATTT+GGG 0.432404 5:-29050990 None:intergenic
TCCGCATAGGACTGTTACTC+AGG 0.434544 5:+29047808 MsG0580026011.01.T01:CDS
GGGCTTCTATGTCTTTGGCT+TGG 0.438314 5:+29051098 MsG0580026011.01.T01:CDS
GTGGAGGAGTTTCAGTGGCT+TGG 0.440030 5:+29053230 MsG0580026011.01.T01:CDS
TGCGAATTCGTTGAGGAAAT+GGG 0.454667 5:+29051201 MsG0580026011.01.T01:CDS
AGTGAGTGATGAAGGTGTGC+AGG 0.455263 5:+29048716 MsG0580026011.01.T01:CDS
TCGTGATGCCGAAGGGCTCT+TGG 0.457741 5:-29053163 None:intergenic
CCAGACCATGCTCCTGTGCC+GGG 0.465265 5:-29053281 None:intergenic
GGAATTGAGCAAGAAGATTG+AGG 0.467306 5:+29048773 MsG0580026011.01.T01:CDS
AAGAAGATTGAGGAAGAGAC+AGG 0.469690 5:+29048783 MsG0580026011.01.T01:CDS
GGCTTGGTTTGCTTATTCAA+AGG 0.469695 5:+29051114 MsG0580026011.01.T01:CDS
ATAGGACTGTTACTCAGGAT+TGG 0.472028 5:+29047813 MsG0580026011.01.T01:CDS
CCTTGCTTCCAAGAGCCCTT+CGG 0.475238 5:+29053155 MsG0580026011.01.T01:CDS
GAGGAAGAGACAGGGTTAGA+GGG 0.482199 5:+29048792 MsG0580026011.01.T01:CDS
ATCCGTTCACAAGGCAGAAA+CGG 0.485674 5:+29047502 MsG0580026011.01.T01:CDS
TGTTTCAGTGGCAAGAGAGT+TGG 0.488206 5:+29049486 MsG0580026011.01.T01:intron
CTCCGCGGTGCTATTCCTGT+TGG 0.491208 5:+29051276 MsG0580026011.01.T01:CDS
GCTGTCCCATTTCCCGGCAC+AGG 0.493493 5:+29053269 MsG0580026011.01.T01:CDS
AGTTGCAACCAATAACCAAC+AGG 0.498115 5:-29051291 None:intergenic
ACCCATAAAGCAAATTTCAC+CGG 0.498414 5:-29051067 None:intergenic
AGAAGAAACTAACCCAAGAA+TGG 0.504406 5:-29051340 None:intergenic
ATTCGCCCCTCCATCTTCCT+AGG 0.509706 5:-29048660 None:intergenic
TTCAGTGGCAAGAGAGTTGG+AGG 0.512045 5:+29049489 MsG0580026011.01.T01:intron
GTTGGGTTTAGTTGTCTGCA+TGG 0.516874 5:-29047384 None:intergenic
GTGAAGCTGAAGACGAGGTA+TGG 0.519148 5:+29047726 MsG0580026011.01.T01:CDS
AACCGTTTCTGCCTTGTGAA+CGG 0.522328 5:-29047504 None:intergenic
AAGAATGCAAAAGCAAAGGC+TGG 0.523228 5:+29053203 MsG0580026011.01.T01:CDS
GATGGAGAAGTGAGTGATGA+AGG 0.528934 5:+29048708 MsG0580026011.01.T01:CDS
TGTCGTGGTGGCTTCTGAGA+CGG 0.533737 5:-29047451 None:intergenic
TGATGCATCACCTAGGAAGA+TGG 0.544905 5:+29048650 MsG0580026011.01.T01:CDS
TTTCAAAGGGAATGGAGTTG+AGG 0.545121 5:+29048752 MsG0580026011.01.T01:CDS
AGCCACTGAAACTCCTCCAC+TGG 0.545514 5:-29053227 None:intergenic
GAAGAAGCTTTGATTTGGGT+AGG 0.550872 5:-29050986 None:intergenic
CATTTCCCGGCACAGGAGCA+TGG 0.556005 5:+29053276 MsG0580026011.01.T01:CDS
CTCCATCATCTTCAGCAACA+TGG 0.557123 5:-29048692 None:intergenic
CAACAAGCTTCGAAGCGGAA+TGG 0.557721 5:+29047403 MsG0580026011.01.T01:CDS
CCGAAGGGCTCTTGGAAGCA+AGG 0.559781 5:-29053155 None:intergenic
TACCATGTTGCTGAAGATGA+TGG 0.563040 5:+29048690 MsG0580026011.01.T01:CDS
GTCGAGGATCGTGATGCCGA+AGG 0.564423 5:-29053171 None:intergenic
GTGAGTGATGAAGGTGTGCA+GGG 0.570525 5:+29048717 MsG0580026011.01.T01:CDS
TGTTGAATGGGAGCCTGTAA+GGG 0.572736 5:+29047692 MsG0580026011.01.T01:intron
CATTCTTGAACAGAATGTCG+AGG 0.574689 5:-29053187 None:intergenic
TAGAGTATGATGAACGGCAC+AGG 0.590240 5:-29053112 None:intergenic
GGAATGGTGGGTTGCCACCG+TGG 0.591207 5:+29047762 MsG0580026011.01.T01:CDS
GACCAGTGGAGGAGTTTCAG+TGG 0.591838 5:+29053225 MsG0580026011.01.T01:CDS
AGCAAAGGCTGGACCAGTGG+AGG 0.594200 5:+29053214 MsG0580026011.01.T01:CDS
GCAAGAGAGTTGGAGGCACA+AGG 0.599528 5:+29049496 MsG0580026011.01.T01:CDS
TCGAGGATCGTGATGCCGAA+GGG 0.602633 5:-29053170 None:intergenic
CTGCTAGAAGATATTTGTCG+TGG 0.604641 5:-29047466 None:intergenic
TGAAGATTGCGAATTCGTTG+AGG 0.609806 5:+29051194 MsG0580026011.01.T01:CDS
GTTCAAGAATGCAAAAGCAA+AGG 0.610215 5:+29053199 MsG0580026011.01.T01:CDS
GTTCATCAAACAACGCAAGA+TGG 0.611011 5:+29047524 MsG0580026011.01.T01:CDS
GCATCACCTAGGAAGATGGA+GGG 0.611437 5:+29048654 MsG0580026011.01.T01:CDS
GTACAATTGATGCAGGAACA+TGG 0.617851 5:+29053087 MsG0580026011.01.T01:intron
CTAGAAGATATTTGTCGTGG+TGG 0.618659 5:-29047463 None:intergenic
ATGGTGGGTTGCCACCGTGG+AGG 0.619425 5:+29047765 MsG0580026011.01.T01:CDS
AGATGAAGAATCCGTTCACA+AGG 0.622210 5:+29047493 MsG0580026011.01.T01:CDS
TGCATCACCTAGGAAGATGG+AGG 0.637928 5:+29048653 MsG0580026011.01.T01:CDS
AAACCCAACAAGCTTCGAAG+CGG 0.642582 5:+29047398 MsG0580026011.01.T01:CDS
CTTCCTGTTCTTGAGCTCCG+CGG 0.643378 5:+29051261 MsG0580026011.01.T01:intron
TGCGTCACAGTATTCCTCCA+CGG 0.649285 5:-29047779 None:intergenic
AGAAGATTGAGGAAGAGACA+GGG 0.656890 5:+29048784 MsG0580026011.01.T01:CDS
CGAATGATGATGCATCACCT+AGG 0.657346 5:+29048643 MsG0580026011.01.T01:CDS
GAATGGGAGCCTGTAAGGGA+TGG 0.663159 5:+29047696 MsG0580026011.01.T01:intron
TTCAGGTAGAGTATGATGAA+CGG 0.664987 5:-29053118 None:intergenic
ATGCTATTGATGAACCTGAA+AGG 0.666449 5:+29051023 MsG0580026011.01.T01:CDS
TGACGCATGATATTCCGCAT+AGG 0.668875 5:+29047795 MsG0580026011.01.T01:CDS
AAAAGCAAAGGCTGGACCAG+TGG 0.673858 5:+29053211 MsG0580026011.01.T01:CDS
CATCACCTAGGAAGATGGAG+GGG 0.680036 5:+29048655 MsG0580026011.01.T01:CDS
TTCGTGTGAAGCTGAAGACG+AGG 0.686023 5:+29047721 MsG0580026011.01.T01:CDS
TCCTGAGTAACAGTCCTATG+CGG 0.703666 5:-29047809 None:intergenic
GTCACAGTATTCCTCCACGG+TGG 0.799476 5:-29047776 None:intergenic
AACCAACAGGAATAGCACCG+CGG 0.805655 5:-29051278 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAACTAAACATTTTTTTT+AGG + Chr5:29049969-29049988 MsG0580026011.01.T01:intron 10.0%
!!! TAAACTAAACATTTTTTTTA+GGG + Chr5:29049970-29049989 MsG0580026011.01.T01:intron 10.0%
!!! TTTTTTTTTTTTTTAATTGG+GGG + Chr5:29048327-29048346 MsG0580026011.01.T01:intron 10.0%
!! ATTAACTATTTGATTATGAT+AGG - Chr5:29050347-29050366 None:intergenic 15.0%
!! ATTAACTTATTGTCATTAAA+AGG + Chr5:29048436-29048455 MsG0580026011.01.T01:intron 15.0%
!! CAATACATAAAATATATGTA+AGG + Chr5:29050400-29050419 MsG0580026011.01.T01:intron 15.0%
!! TTATTAGAAGTTAAAAATGT+TGG - Chr5:29050775-29050794 None:intergenic 15.0%
!!! AAAAAAATTGATACTTTTGA+AGG - Chr5:29048133-29048152 None:intergenic 15.0%
!!! AAACTAAACATTTTTTTTAG+GGG + Chr5:29049971-29049990 MsG0580026011.01.T01:intron 15.0%
!!! AAAGTATCAATTTTTTTATC+TGG + Chr5:29048136-29048155 MsG0580026011.01.T01:intron 15.0%
!!! AAAGTTTTGATTTTTTTATC+TGG + Chr5:29047986-29048005 MsG0580026011.01.T01:intron 15.0%
!!! AAGTATCAATTTTTTTATCT+GGG + Chr5:29048137-29048156 MsG0580026011.01.T01:intron 15.0%
!!! AAGTTTTGATTTTTTTATCT+GGG + Chr5:29047987-29048006 MsG0580026011.01.T01:intron 15.0%
!!! ATATTTTTTTGACTGAATTA+AGG + Chr5:29050313-29050332 MsG0580026011.01.T01:intron 15.0%
!!! ATTTTAAAATTGATGGTAAT+CGG - Chr5:29050250-29050269 None:intergenic 15.0%
!!! GACATATTTAATTTGTTTTT+TGG + Chr5:29053025-29053044 MsG0580026011.01.T01:intron 15.0%
!!! TATTTGATTTTTTTTTGTAG+TGG - Chr5:29050444-29050463 None:intergenic 15.0%
!!! TATTTTTTTGACTGAATTAA+GGG + Chr5:29050314-29050333 MsG0580026011.01.T01:intron 15.0%
!! AACACTTCATAAAACTAAAT+TGG - Chr5:29048268-29048287 None:intergenic 20.0%
!! AGTTACATGTTAAAACATTT+AGG + Chr5:29049590-29049609 MsG0580026011.01.T01:intron 20.0%
!! TAAGATAGATCTGAATATTT+AGG + Chr5:29052058-29052077 MsG0580026011.01.T01:intron 20.0%
!! TATAAGAGAAACTATTAAGA+AGG + Chr5:29051739-29051758 MsG0580026011.01.T01:intron 20.0%
!!! AAGTATCAATATCTTTTATC+TGG + Chr5:29048208-29048227 MsG0580026011.01.T01:intron 20.0%
!!! AATTTGTTTTTTGGTAGTAA+TGG + Chr5:29053034-29053053 MsG0580026011.01.T01:intron 20.0%
!!! AGAATTATTTTCAACAAACT+TGG - Chr5:29052666-29052685 None:intergenic 20.0%
!!! ATATTTCTTTTATTGTTAGC+TGG + Chr5:29050609-29050628 MsG0580026011.01.T01:intron 20.0%
!!! ATTTGTTTTTTGGTAGTAAT+GGG + Chr5:29053035-29053054 MsG0580026011.01.T01:intron 20.0%
!!! GTTTCTCTTATAGTTTTTAT+AGG - Chr5:29051731-29051750 None:intergenic 20.0%
!!! TTTTTGAGTTTAATTTACCA+TGG + Chr5:29049891-29049910 MsG0580026011.01.T01:intron 20.0%
! AATTTCAATAAACGAGTGAT+TGG - Chr5:29049144-29049163 None:intergenic 25.0%
! ACTGGATTAATTGATCAAAA+GGG - Chr5:29048946-29048965 None:intergenic 25.0%
! ATAAAATATATGTAAGGTCC+GGG + Chr5:29050406-29050425 MsG0580026011.01.T01:intron 25.0%
! ATACTATTGAAATCTTGAAG+CGG + Chr5:29049866-29049885 MsG0580026011.01.T01:intron 25.0%
! CATAAAATATATGTAAGGTC+CGG + Chr5:29050405-29050424 MsG0580026011.01.T01:intron 25.0%
! CATCACATAACTTAACAAAA+GGG - Chr5:29051881-29051900 None:intergenic 25.0%
! GCATTAGAAACAAAAAGAAA+CGG - Chr5:29050727-29050746 None:intergenic 25.0%
! TACAAAATGTTGTCAAATTC+TGG + Chr5:29052916-29052935 MsG0580026011.01.T01:intron 25.0%
!! ATTAAAGATTTTATGCAGCA+TGG - Chr5:29052805-29052824 None:intergenic 25.0%
!! TTGTAGATTAGTTAATCAAG+AGG + Chr5:29049027-29049046 MsG0580026011.01.T01:intron 25.0%
!!! CATTGTTACTTTTTTTGTTG+AGG - Chr5:29050194-29050213 None:intergenic 25.0%
!!! GATATTCTTTGGTTTTCAAA+GGG + Chr5:29048739-29048758 MsG0580026011.01.T01:CDS 25.0%
!!! TGATTTTTTTTTGTAGTGGT+CGG - Chr5:29050440-29050459 None:intergenic 25.0%
!!! TTTTTTTTTAATTGGGGGTT+AGG + Chr5:29048332-29048351 MsG0580026011.01.T01:intron 25.0%
AAGTGAGTAGCAGAAATATT+TGG - Chr5:29050643-29050662 None:intergenic 30.0%
AATGACAAAAGTTGTTCCTT+AGG - Chr5:29049009-29049028 None:intergenic 30.0%
AGCTTCTTCTACTGAATATT+TGG + Chr5:29051000-29051019 MsG0580026011.01.T01:CDS 30.0%
AGTATAACAACAATGTTCGA+TGG + Chr5:29049726-29049745 MsG0580026011.01.T01:intron 30.0%
ATGATTATGATCCATTTCCA+TGG - Chr5:29049705-29049724 None:intergenic 30.0%
ATTGATATTGCGAAAATCTG+TGG + Chr5:29052189-29052208 MsG0580026011.01.T01:intron 30.0%
ATTTGTATCTGAATATGCCA+TGG - Chr5:29048495-29048514 None:intergenic 30.0%
CAAACCAAAATGCTCTTTAA+TGG + Chr5:29050808-29050827 MsG0580026011.01.T01:intron 30.0%
CAAGATTTGTGATACTTGAA+CGG + Chr5:29050218-29050237 MsG0580026011.01.T01:intron 30.0%
CAGAAAAGATGGTTAAATCT+GGG + Chr5:29051607-29051626 MsG0580026011.01.T01:intron 30.0%
CAGAACAACCAAATATTTCA+GGG - Chr5:29049360-29049379 None:intergenic 30.0%
CGATATACGATAGAACATTA+TGG + Chr5:29051791-29051810 MsG0580026011.01.T01:intron 30.0%
CTGGATTAATTGATCAAAAG+GGG - Chr5:29048945-29048964 None:intergenic 30.0%
GACTGGATTAATTGATCAAA+AGG - Chr5:29048947-29048966 None:intergenic 30.0%
GCATCACATAACTTAACAAA+AGG - Chr5:29051882-29051901 None:intergenic 30.0%
GTAAGAGATACTGTAAAACA+AGG - Chr5:29049421-29049440 None:intergenic 30.0%
TAAAATATATGTAAGGTCCG+GGG + Chr5:29050407-29050426 MsG0580026011.01.T01:intron 30.0%
TATACGATAGAACATTATGG+CGG + Chr5:29051794-29051813 MsG0580026011.01.T01:intron 30.0%
TCAGAAAAGATGGTTAAATC+TGG + Chr5:29051606-29051625 MsG0580026011.01.T01:intron 30.0%
TCAGAACAACCAAATATTTC+AGG - Chr5:29049361-29049380 None:intergenic 30.0%
TCAGTATGTAGTATGTACAA+AGG - Chr5:29049556-29049575 None:intergenic 30.0%
TCGTAAAAAATCAACCTTTC+AGG - Chr5:29051040-29051059 None:intergenic 30.0%
TCTATTAAAGCTTCTGGATT+TGG + Chr5:29051169-29051188 MsG0580026011.01.T01:CDS 30.0%
TGACAGAAACTTAATTCACT+TGG - Chr5:29050044-29050063 None:intergenic 30.0%
TGGAGACTGTTTCAATATTT+AGG + Chr5:29052555-29052574 MsG0580026011.01.T01:intron 30.0%
TGGATTAATTGATCAAAAGG+GGG - Chr5:29048944-29048963 None:intergenic 30.0%
TTAGCTGGTTAATTGTTAGT+GGG + Chr5:29052132-29052151 MsG0580026011.01.T01:intron 30.0%
TTCGAATAGAAGTTCAAATG+AGG + Chr5:29052685-29052704 MsG0580026011.01.T01:intron 30.0%
TTTGGATTCTTCTGTTGAAT+GGG + Chr5:29047680-29047699 MsG0580026011.01.T01:intron 30.0%
! AATGATGGTGTTTGAAAAGT+GGG - Chr5:29050893-29050912 None:intergenic 30.0%
! AGGTATGGAATTTTCTTAGA+GGG + Chr5:29047741-29047760 MsG0580026011.01.T01:CDS 30.0%
! AGTAGAAGAAGCTTTGATTT+GGG - Chr5:29050993-29051012 None:intergenic 30.0%
! GTTGATTCTATTAAAGCTTC+TGG + Chr5:29051163-29051182 MsG0580026011.01.T01:CDS 30.0%
! TCGATGGTTTGTAATGTTAT+AGG + Chr5:29049742-29049761 MsG0580026011.01.T01:intron 30.0%
! TGATAATGAGTTGAATTCCT+AGG + Chr5:29048377-29048396 MsG0580026011.01.T01:intron 30.0%
! TTCATTTTCTTGTGTTTCAG+TGG + Chr5:29049474-29049493 MsG0580026011.01.T01:intron 30.0%
! TTTAAACGTGTGTTTTGTCA+CGG + Chr5:29049268-29049287 MsG0580026011.01.T01:intron 30.0%
! TTTTAGCATCAAATGTTAGC+TGG + Chr5:29052117-29052136 MsG0580026011.01.T01:intron 30.0%
! TTTTTGTACCTATGTAAGAC+CGG + Chr5:29051423-29051442 MsG0580026011.01.T01:intron 30.0%
!! TCTGGTTATTTTGTTAAGCT+TGG + Chr5:29048226-29048245 MsG0580026011.01.T01:intron 30.0%
!! TGCTTTATGGGTTATTTTCT+GGG + Chr5:29051078-29051097 MsG0580026011.01.T01:CDS 30.0%
!! TTCTTCACTTTTGTACAGTA+GGG + Chr5:29051918-29051937 MsG0580026011.01.T01:intron 30.0%
!! TTGCTTTATGGGTTATTTTC+TGG + Chr5:29051077-29051096 MsG0580026011.01.T01:CDS 30.0%
!! TTTCTTCACTTTTGTACAGT+AGG + Chr5:29051917-29051936 MsG0580026011.01.T01:intron 30.0%
!!! ATCGTTTTGCTTTGTTTATC+TGG + Chr5:29049065-29049084 MsG0580026011.01.T01:intron 30.0%
!!! GATTTTTTACGAGGAAAAAC+CGG + Chr5:29051048-29051067 MsG0580026011.01.T01:CDS 30.0%
!!! GATTTTTTTTTGTAGTGGTC+GGG - Chr5:29050439-29050458 None:intergenic 30.0%
!!! GGATATTCTTTGGTTTTCAA+AGG + Chr5:29048738-29048757 MsG0580026011.01.T01:CDS 30.0%
!!! TGAAAGGTTGATTTTTTACG+AGG + Chr5:29051039-29051058 MsG0580026011.01.T01:CDS 30.0%
!!! TGCTTGGTTTTTTGTTTCTT+TGG + Chr5:29048594-29048613 MsG0580026011.01.T01:intron 30.0%
!!! TTATTTTTTCTCCTTTGTCC+AGG - Chr5:29048409-29048428 None:intergenic 30.0%
!!! TTTCTGATAGTTTTAGCTTC+TGG + Chr5:29052608-29052627 MsG0580026011.01.T01:intron 30.0%
!!! TTTTTTTATCTGGGTTGCTT+TGG + Chr5:29047996-29048015 MsG0580026011.01.T01:intron 30.0%
AAAAAGAAACGGAGTTCACA+AGG - Chr5:29050716-29050735 None:intergenic 35.0%
AAAAGTTGTTCCTTAGGACT+TGG - Chr5:29049003-29049022 None:intergenic 35.0%
AAAGAGAAGAACCATGATGA+AGG - Chr5:29050940-29050959 None:intergenic 35.0%
AAGAGAAGAACCATGATGAA+GGG - Chr5:29050939-29050958 None:intergenic 35.0%
AAGGATGTAGAGATTACTGA+GGG + Chr5:29051758-29051777 MsG0580026011.01.T01:intron 35.0%
ACAACAATTAAAGGCCACAT+TGG - Chr5:29052215-29052234 None:intergenic 35.0%
ACAATAACACTGTATGGTTG+TGG + Chr5:29052949-29052968 MsG0580026011.01.T01:intron 35.0%
ACAGAAGAATCCAAAGTCTT+TGG - Chr5:29047675-29047694 None:intergenic 35.0%
ACCCATAAAGCAAATTTCAC+CGG - Chr5:29051070-29051089 None:intergenic 35.0%
ACCTGCATAGTCACATTATT+TGG - Chr5:29048881-29048900 None:intergenic 35.0%
ACTTGGCTAATACTCAAACA+AGG - Chr5:29052641-29052660 None:intergenic 35.0%
AGAAGAAACTAACCCAAGAA+TGG - Chr5:29051343-29051362 None:intergenic 35.0%
AGAATGTCAGTTACAGATTG+CGG - Chr5:29052997-29053016 None:intergenic 35.0%
AGCAACGAGAATATTAGAGA+GGG + Chr5:29051562-29051581 MsG0580026011.01.T01:intron 35.0%
AGTCTCCAATACACTTCATT+TGG - Chr5:29052543-29052562 None:intergenic 35.0%
ATACAACTGTCGTATGGTAT+CGG + Chr5:29052725-29052744 MsG0580026011.01.T01:intron 35.0%
ATACCTAATGATACTGACCA+TGG - Chr5:29049911-29049930 None:intergenic 35.0%
ATAGTAGCAACTACTCAGTT+AGG - Chr5:29052371-29052390 None:intergenic 35.0%
ATATGCATGTGTTGAATGCA+AGG + Chr5:29052491-29052510 MsG0580026011.01.T01:intron 35.0%
ATGCTATTGATGAACCTGAA+AGG + Chr5:29051023-29051042 MsG0580026011.01.T01:CDS 35.0%
ATGTAGTCGATCCTATTTAG+TGG + Chr5:29051826-29051845 MsG0580026011.01.T01:intron 35.0%
CAAGTCTTAACCCACTAAAT+AGG - Chr5:29051840-29051859 None:intergenic 35.0%
CACAATGCGACAACAATTAA+AGG - Chr5:29052224-29052243 None:intergenic 35.0%
CACTTAATTTACTCTCGTGT+TGG - Chr5:29051486-29051505 None:intergenic 35.0%
CATCCAAAACTGTTATGTCA+CGG + Chr5:29052253-29052272 MsG0580026011.01.T01:intron 35.0%
CGAGAGTAAATTAAGTGTAG+CGG + Chr5:29051489-29051508 MsG0580026011.01.T01:intron 35.0%
CTTTAATTGTTGTCGCATTG+TGG + Chr5:29052222-29052241 MsG0580026011.01.T01:intron 35.0%
CTTTGGATTCTTCTGTTGAA+TGG + Chr5:29047679-29047698 MsG0580026011.01.T01:intron 35.0%
GCATTCAACACATGCATATT+AGG - Chr5:29052490-29052509 None:intergenic 35.0%
GCTTAAAATTGCCATGGAAA+TGG + Chr5:29049691-29049710 MsG0580026011.01.T01:intron 35.0%
GGATAAAGCTTTCCATTCAA+AGG - Chr5:29048840-29048859 None:intergenic 35.0%
GGATGACAAAAGGTAAGTAA+CGG + Chr5:29052512-29052531 MsG0580026011.01.T01:intron 35.0%
GTAACAAGTGTGTCCATATT+AGG - Chr5:29052422-29052441 None:intergenic 35.0%
GTCTCCAATACACTTCATTT+GGG - Chr5:29052542-29052561 None:intergenic 35.0%
GTGACAAAACACACGTTTAA+AGG - Chr5:29049269-29049288 None:intergenic 35.0%
GTTAGCTGGTTAATTGTTAG+TGG + Chr5:29052131-29052150 MsG0580026011.01.T01:intron 35.0%
GTTCAAGAATGCAAAAGCAA+AGG + Chr5:29053199-29053218 MsG0580026011.01.T01:CDS 35.0%
TAGCAACGAGAATATTAGAG+AGG + Chr5:29051561-29051580 MsG0580026011.01.T01:intron 35.0%
TAGCTGGTTAATTGTTAGTG+GGG + Chr5:29052133-29052152 MsG0580026011.01.T01:intron 35.0%
TAGTCAAATCACTAGATGTG+AGG + Chr5:29051701-29051720 MsG0580026011.01.T01:intron 35.0%
TAGTTTCTGATGTCTCAAGA+AGG + Chr5:29052771-29052790 MsG0580026011.01.T01:intron 35.0%
TATGCATGACACTTCTATAG+AGG + Chr5:29052035-29052054 MsG0580026011.01.T01:intron 35.0%
TCAAAATCAACCAAGTCCTA+AGG + Chr5:29048990-29049009 MsG0580026011.01.T01:intron 35.0%
TCAAACTAGTCCAAAGACTT+TGG + Chr5:29047662-29047681 MsG0580026011.01.T01:intron 35.0%
TCCAAATAATGTGACTATGC+AGG + Chr5:29048877-29048896 MsG0580026011.01.T01:intron 35.0%
TGACTGTGTTATCCATTCTT+GGG + Chr5:29051328-29051347 MsG0580026011.01.T01:CDS 35.0%
TGTAGCAGTGTTTCAAATAG+CGG + Chr5:29052827-29052846 MsG0580026011.01.T01:intron 35.0%
TGTAGTCGATCCTATTTAGT+GGG + Chr5:29051827-29051846 MsG0580026011.01.T01:intron 35.0%
TGTTGTGTAGTATCTATCCA+TGG + Chr5:29048475-29048494 MsG0580026011.01.T01:intron 35.0%
TTACCATGGTCAGTATCATT+AGG + Chr5:29049905-29049924 MsG0580026011.01.T01:intron 35.0%
TTCAGGTAGAGTATGATGAA+CGG - Chr5:29053121-29053140 None:intergenic 35.0%
TTCGCCAACATCTTATGTAA+AGG - Chr5:29049091-29049110 None:intergenic 35.0%
TTCTTGAGACATCAGAAACT+AGG - Chr5:29052772-29052791 None:intergenic 35.0%
TTGAATGCAAGGATGACAAA+AGG + Chr5:29052502-29052521 MsG0580026011.01.T01:intron 35.0%
TTGACTGTGTTATCCATTCT+TGG + Chr5:29051327-29051346 MsG0580026011.01.T01:CDS 35.0%
TTTCAACAAACTTGGACACT+TGG - Chr5:29052658-29052677 None:intergenic 35.0%
! AACCGGTGAAATTTGCTTTA+TGG + Chr5:29051065-29051084 MsG0580026011.01.T01:CDS 35.0%
! AATCTTGAAGCGTCCTAATA+TGG + Chr5:29052406-29052425 MsG0580026011.01.T01:intron 35.0%
! AATTTTCTTAGAGGGAATGG+TGG + Chr5:29047749-29047768 MsG0580026011.01.T01:CDS 35.0%
! ACCGGTGAAATTTGCTTTAT+GGG + Chr5:29051066-29051085 MsG0580026011.01.T01:CDS 35.0%
! ATGATGGTGTTTGAAAAGTG+GGG - Chr5:29050892-29050911 None:intergenic 35.0%
! ATTTTCTTAGAGGGAATGGT+GGG + Chr5:29047750-29047769 MsG0580026011.01.T01:CDS 35.0%
! CAGTAGAAGAAGCTTTGATT+TGG - Chr5:29050994-29051013 None:intergenic 35.0%
! GAATGATGGTGTTTGAAAAG+TGG - Chr5:29050894-29050913 None:intergenic 35.0%
! GAGGTATGGAATTTTCTTAG+AGG + Chr5:29047740-29047759 MsG0580026011.01.T01:CDS 35.0%
! TGGAATTTTCTTAGAGGGAA+TGG + Chr5:29047746-29047765 MsG0580026011.01.T01:CDS 35.0%
! TTGGTTCTTCCTTTCTCAAA+AGG + Chr5:29048905-29048924 MsG0580026011.01.T01:intron 35.0%
! TTTTCTCGTTGAATTGTGCT+TGG + Chr5:29048578-29048597 MsG0580026011.01.T01:intron 35.0%
!! CAATGCAATGGACTATTACA+AGG - Chr5:29049648-29049667 None:intergenic 35.0%
!! GAACTCTAACCTTTTGAGAA+AGG - Chr5:29048917-29048936 None:intergenic 35.0%
!! GAGTTTTGTACAATTGATGC+AGG + Chr5:29053080-29053099 MsG0580026011.01.T01:intron 35.0%
!! TAGTAATGGGAGTTCTTTTG+TGG + Chr5:29053048-29053067 MsG0580026011.01.T01:intron 35.0%
!!! AAAAGTGGGGTTTTTTGATG+GGG - Chr5:29050879-29050898 None:intergenic 35.0%
!!! GAAAAGTGGGGTTTTTTGAT+GGG - Chr5:29050880-29050899 None:intergenic 35.0%
!!! GAAGCCATTAAAGAGCATTT+TGG - Chr5:29050815-29050834 None:intergenic 35.0%
!!! GGTTTTGGTTAAGAGAATGA+TGG - Chr5:29050908-29050927 None:intergenic 35.0%
!!! TCTTTGGTTTTCAAAGGGAA+TGG + Chr5:29048744-29048763 MsG0580026011.01.T01:CDS 35.0%
!!! TGAAAAGTGGGGTTTTTTGA+TGG - Chr5:29050881-29050900 None:intergenic 35.0%
AAAACTGTTATGTCACGGCT+CGG + Chr5:29052258-29052277 MsG0580026011.01.T01:intron 40.0%
AACTACTCAGTTAGGAGTTC+TGG - Chr5:29052363-29052382 None:intergenic 40.0%
AAGAAGATTGAGGAAGAGAC+AGG + Chr5:29048783-29048802 MsG0580026011.01.T01:CDS 40.0%
AAGAATGCAAAAGCAAAGGC+TGG + Chr5:29053203-29053222 MsG0580026011.01.T01:CDS 40.0%
AATTCGTTGAGGAAATGGGT+TGG + Chr5:29051205-29051224 MsG0580026011.01.T01:intron 40.0%
ACGAGAATATTAGAGAGGGA+AGG + Chr5:29051566-29051585 MsG0580026011.01.T01:intron 40.0%
AGAACCATGATGAAGGGTTA+AGG - Chr5:29050933-29050952 None:intergenic 40.0%
AGAAGATTGAGGAAGAGACA+GGG + Chr5:29048784-29048803 MsG0580026011.01.T01:CDS 40.0%
AGATGAAGAATCCGTTCACA+AGG + Chr5:29047493-29047512 MsG0580026011.01.T01:CDS 40.0%
AGATGGTTAAATCTGGGCTT+AGG + Chr5:29051613-29051632 MsG0580026011.01.T01:intron 40.0%
AGCAGCACAATAACACTGTA+TGG + Chr5:29052943-29052962 MsG0580026011.01.T01:intron 40.0%
AGGAAGATGCAAATCGTTTC+AGG - Chr5:29053138-29053157 None:intergenic 40.0%
AGGATGTAGAGATTACTGAG+GGG + Chr5:29051759-29051778 MsG0580026011.01.T01:intron 40.0%
AGGATGTTGCATTGGATGTT+TGG + Chr5:29051517-29051536 MsG0580026011.01.T01:intron 40.0%
AGGCTTCAAGATTGTTCTCT+AGG + Chr5:29049762-29049781 MsG0580026011.01.T01:intron 40.0%
AGTTGCAACCAATAACCAAC+AGG - Chr5:29051294-29051313 None:intergenic 40.0%
ATAGGAAGAGATGGCATAGA+AGG + Chr5:29051948-29051967 MsG0580026011.01.T01:intron 40.0%
ATAGGACTGTTACTCAGGAT+TGG + Chr5:29047813-29047832 MsG0580026011.01.T01:CDS 40.0%
ATATTAGAGAGGGAAGGAGT+AGG + Chr5:29051572-29051591 MsG0580026011.01.T01:intron 40.0%
ATCCGTCTCAAAAGCTGTTA+CGG + Chr5:29047580-29047599 MsG0580026011.01.T01:intron 40.0%
CATTCTTGAACAGAATGTCG+AGG - Chr5:29053190-29053209 None:intergenic 40.0%
CGTTCCCAAATGAAGTGTAT+TGG + Chr5:29052535-29052554 MsG0580026011.01.T01:intron 40.0%
CTAGAAGATATTTGTCGTGG+TGG - Chr5:29047466-29047485 None:intergenic 40.0%
CTCCTTACTACATAATCAGC+AGG - Chr5:29051663-29051682 None:intergenic 40.0%
CTGCTAGAAGATATTTGTCG+TGG - Chr5:29047469-29047488 None:intergenic 40.0%
CTTTCCATTCAAAGGACTCT+TGG - Chr5:29048832-29048851 None:intergenic 40.0%
GAAAAGCTAGCAGAAACACT+AGG - Chr5:29047938-29047957 None:intergenic 40.0%
GAAGCAGCTTAAAATTGCCA+TGG + Chr5:29049685-29049704 MsG0580026011.01.T01:intron 40.0%
GAAGGATGTAGAGATTACTG+AGG + Chr5:29051757-29051776 MsG0580026011.01.T01:intron 40.0%
GATAACACAGTCAAACTTGC+AGG - Chr5:29051321-29051340 None:intergenic 40.0%
GATTCTGCTGAACAATGCAA+TGG - Chr5:29049660-29049679 None:intergenic 40.0%
GGAATTGAGCAAGAAGATTG+AGG + Chr5:29048773-29048792 MsG0580026011.01.T01:CDS 40.0%
GGATAACGTTGTCGTAGTTT+GGG - Chr5:29047564-29047583 None:intergenic 40.0%
GGGATTATACAACTGTCGTA+TGG + Chr5:29052719-29052738 MsG0580026011.01.T01:intron 40.0%
GTAAACACAACAACCCAATC+AGG - Chr5:29051231-29051250 None:intergenic 40.0%
GTACAATTGATGCAGGAACA+TGG + Chr5:29053087-29053106 MsG0580026011.01.T01:intron 40.0%
GTAGCAACTCTCAGAAAAGA+TGG + Chr5:29051596-29051615 MsG0580026011.01.T01:intron 40.0%
GTTCATCAAACAACGCAAGA+TGG + Chr5:29047524-29047543 MsG0580026011.01.T01:CDS 40.0%
TAAGGAGACTAGATCATACG+AGG + Chr5:29051676-29051695 MsG0580026011.01.T01:intron 40.0%
TACAACTGTCGTATGGTATC+GGG + Chr5:29052726-29052745 MsG0580026011.01.T01:intron 40.0%
TACCATGTTGCTGAAGATGA+TGG + Chr5:29048690-29048709 MsG0580026011.01.T01:CDS 40.0%
TAGGACTGTTACTCAGGATT+GGG + Chr5:29047814-29047833 MsG0580026011.01.T01:CDS 40.0%
TATTAGAGAGGGAAGGAGTA+GGG + Chr5:29051573-29051592 MsG0580026011.01.T01:intron 40.0%
TGAACTTAGCTCAGTTGGTT+GGG + Chr5:29050376-29050395 MsG0580026011.01.T01:intron 40.0%
TGAAGATTGCGAATTCGTTG+AGG + Chr5:29051194-29051213 MsG0580026011.01.T01:CDS 40.0%
TGCGAATTCGTTGAGGAAAT+GGG + Chr5:29051201-29051220 MsG0580026011.01.T01:CDS 40.0%
TGGTTAGACTCTGCAATTTC+TGG + Chr5:29049303-29049322 MsG0580026011.01.T01:intron 40.0%
TGTACCAAGAGTCCTTTGAA+TGG + Chr5:29048825-29048844 MsG0580026011.01.T01:intron 40.0%
TTAATTGTTAGTGGGGTGCA+TGG + Chr5:29052140-29052159 MsG0580026011.01.T01:intron 40.0%
TTACTCAGGATTGGGTTTGT+GGG + Chr5:29047822-29047841 MsG0580026011.01.T01:intron 40.0%
TTCAGACACTCCATTCTTCT+CGG + Chr5:29047618-29047637 MsG0580026011.01.T01:intron 40.0%
TTGCGAATTCGTTGAGGAAA+TGG + Chr5:29051200-29051219 MsG0580026011.01.T01:CDS 40.0%
TTTCAAAGGGAATGGAGTTG+AGG + Chr5:29048752-29048771 MsG0580026011.01.T01:CDS 40.0%
TTTCTGGGCTTCTATGTCTT+TGG + Chr5:29051093-29051112 MsG0580026011.01.T01:CDS 40.0%
! AAGCCAGATTTTGCAACACA+TGG + Chr5:29049530-29049549 MsG0580026011.01.T01:CDS 40.0%
! AATTAAGTGTAGCGGAGATG+AGG + Chr5:29051497-29051516 MsG0580026011.01.T01:intron 40.0%
! ATGGGGTTAGTGAAGTGAAA+TGG - Chr5:29050862-29050881 None:intergenic 40.0%
! CTGGCCTTTACATAAGATGT+TGG + Chr5:29049084-29049103 MsG0580026011.01.T01:intron 40.0%
! GACCTGCTGATTATGTAGTA+AGG + Chr5:29051658-29051677 MsG0580026011.01.T01:intron 40.0%
! GTAGCGTCATCTCTTTTCTT+CGG + Chr5:29050675-29050694 MsG0580026011.01.T01:intron 40.0%
! GTGCTATTCCTGTTGGTTAT+TGG + Chr5:29051283-29051302 MsG0580026011.01.T01:CDS 40.0%
! TGGGGTTAGTGAAGTGAAAT+GGG - Chr5:29050861-29050880 None:intergenic 40.0%
! TGTGACTATGCAGGTTGTTT+TGG + Chr5:29048886-29048905 MsG0580026011.01.T01:intron 40.0%
!! CAAATGAGGAGTGTTTGACA+GGG + Chr5:29052699-29052718 MsG0580026011.01.T01:intron 40.0%
!! GAAGAAGCTTTGATTTGGGT+AGG - Chr5:29050989-29051008 None:intergenic 40.0%
!! GGCTCTTTATTTCTACGGTT+TGG + Chr5:29051978-29051997 MsG0580026011.01.T01:intron 40.0%
!! GGCTTGGTTTGCTTATTCAA+AGG + Chr5:29051114-29051133 MsG0580026011.01.T01:CDS 40.0%
!! GGGTAGGCTCTTTATTTCTA+CGG + Chr5:29051973-29051992 MsG0580026011.01.T01:intron 40.0%
!! TCAAATGAGGAGTGTTTGAC+AGG + Chr5:29052698-29052717 MsG0580026011.01.T01:intron 40.0%
!! TCTGGCTCTGGAAAATGTAT+TGG + Chr5:29049321-29049340 MsG0580026011.01.T01:intron 40.0%
!! TGCAATGGACTATTACAAGG+CGG - Chr5:29049645-29049664 None:intergenic 40.0%
!!! TGCTAGCTTTTCTAGACAAC+AGG + Chr5:29047946-29047965 MsG0580026011.01.T01:intron 40.0%
AAACCCAACAAGCTTCGAAG+CGG + Chr5:29047398-29047417 MsG0580026011.01.T01:CDS 45.0%
AAATCTGGGCTTAGGTGGTT+TGG + Chr5:29051621-29051640 MsG0580026011.01.T01:intron 45.0%
AACCGTTTCTGCCTTGTGAA+CGG - Chr5:29047507-29047526 None:intergenic 45.0%
AAGAGATGGCATAGAAGGTG+GGG + Chr5:29051953-29051972 MsG0580026011.01.T01:intron 45.0%
AAGCTAGCAGAAACACTAGG+AGG - Chr5:29047935-29047954 None:intergenic 45.0%
AATCTGGGCTTAGGTGGTTT+GGG + Chr5:29051622-29051641 MsG0580026011.01.T01:intron 45.0%
ACCATGATGAAGGGTTAAGG+AGG - Chr5:29050930-29050949 None:intergenic 45.0%
AGGCCATGTGTTGCAAAATC+TGG - Chr5:29049536-29049555 None:intergenic 45.0%
AGGTGTGCAGGGATATTCTT+TGG + Chr5:29048728-29048747 MsG0580026011.01.T01:CDS 45.0%
ATACCAGCGCTATAGCTAAG+TGG + Chr5:29052852-29052871 MsG0580026011.01.T01:intron 45.0%
ATCCGTTCACAAGGCAGAAA+CGG + Chr5:29047502-29047521 MsG0580026011.01.T01:CDS 45.0%
ATTAGAGAGGGAAGGAGTAG+GGG + Chr5:29051574-29051593 MsG0580026011.01.T01:intron 45.0%
CAAGTGCAGTAGTAGTAGAC+TGG - Chr5:29048964-29048983 None:intergenic 45.0%
CCATGATGAAGGGTTAAGGA+GGG - Chr5:29050929-29050948 None:intergenic 45.0%
CGGATAACGTTGTCGTAGTT+TGG - Chr5:29047565-29047584 None:intergenic 45.0%
CTCCATCATCTTCAGCAACA+TGG - Chr5:29048695-29048714 None:intergenic 45.0%
GAAGAGATGGCATAGAAGGT+GGG + Chr5:29051952-29051971 MsG0580026011.01.T01:intron 45.0%
GATGGAGAAGTGAGTGATGA+AGG + Chr5:29048708-29048727 MsG0580026011.01.T01:CDS 45.0%
GCGTTGTGCCCTGAAATATT+TGG + Chr5:29049349-29049368 MsG0580026011.01.T01:intron 45.0%
GGATGTAGAGATTACTGAGG+GGG + Chr5:29051760-29051779 MsG0580026011.01.T01:intron 45.0%
GGTAGAGAGATAGGAAGAGA+TGG + Chr5:29051939-29051958 MsG0580026011.01.T01:intron 45.0%
GTACAGTAGGGTAGAGAGAT+AGG + Chr5:29051930-29051949 MsG0580026011.01.T01:intron 45.0%
GTGAACTTAGCTCAGTTGGT+TGG + Chr5:29050375-29050394 MsG0580026011.01.T01:intron 45.0%
GTTACTCAGGATTGGGTTTG+TGG + Chr5:29047821-29047840 MsG0580026011.01.T01:intron 45.0%
GTTTCAAAAGCTGGAGCAGA+AGG - Chr5:29047884-29047903 None:intergenic 45.0%
TACCAGCGCTATAGCTAAGT+GGG + Chr5:29052853-29052872 MsG0580026011.01.T01:intron 45.0%
TAGAGATTACTGAGGGGGAT+GGG + Chr5:29051765-29051784 MsG0580026011.01.T01:intron 45.0%
TAGAGTATGATGAACGGCAC+AGG - Chr5:29053115-29053134 None:intergenic 45.0%
TAGGATGTTGAAACCCTGGT+GGG + Chr5:29052288-29052307 MsG0580026011.01.T01:intron 45.0%
TCCTGAGTAACAGTCCTATG+CGG - Chr5:29047812-29047831 None:intergenic 45.0%
TGAATTCCTAGGTTCGAACC+TGG + Chr5:29048388-29048407 MsG0580026011.01.T01:intron 45.0%
TGACGCATGATATTCCGCAT+AGG + Chr5:29047795-29047814 MsG0580026011.01.T01:CDS 45.0%
TGATGCATCACCTAGGAAGA+TGG + Chr5:29048650-29048669 MsG0580026011.01.T01:CDS 45.0%
TGGTTAAATCTGGGCTTAGG+TGG + Chr5:29051616-29051635 MsG0580026011.01.T01:intron 45.0%
TGTTGAATGGGAGCCTGTAA+GGG + Chr5:29047692-29047711 MsG0580026011.01.T01:intron 45.0%
TGTTTCAGTGGCAAGAGAGT+TGG + Chr5:29049486-29049505 MsG0580026011.01.T01:intron 45.0%
TTAGGATGTTGAAACCCTGG+TGG + Chr5:29052287-29052306 MsG0580026011.01.T01:intron 45.0%
! ATGGAGTGTCTGAAGCTGTT+AGG - Chr5:29047612-29047631 None:intergenic 45.0%
! ATTCCGCTTCGAAGCTTGTT+GGG - Chr5:29047404-29047423 None:intergenic 45.0%
! CGAATGATGATGCATCACCT+AGG + Chr5:29048643-29048662 MsG0580026011.01.T01:CDS 45.0%
! GAGCCGTGACATAACAGTTT+TGG - Chr5:29052259-29052278 None:intergenic 45.0%
! GGCATGCTAGTTTCAAAAGC+TGG - Chr5:29047893-29047912 None:intergenic 45.0%
! GGGGTTAGTGAAGTGAAATG+GGG - Chr5:29050860-29050879 None:intergenic 45.0%
! GGGTTAGTGAAGTGAAATGG+GGG - Chr5:29050859-29050878 None:intergenic 45.0%
! GGTTTAGGATGTTGAAACCC+TGG + Chr5:29052284-29052303 MsG0580026011.01.T01:intron 45.0%
! TGAAGGGTTAAGGAGGGTTT+TGG - Chr5:29050923-29050942 None:intergenic 45.0%
!! ACTTAGCTATAGCGCTGGTA+TGG - Chr5:29052853-29052872 None:intergenic 45.0%
!! TGCCGTAACAGCTTTTGAGA+CGG - Chr5:29047585-29047604 None:intergenic 45.0%
!!! AAAAAATATTTTAAAATTGA+TGG - Chr5:29050257-29050276 None:intergenic 5.0%
!!! AATTTTTTTTTTTTTTTATG+TGG + Chr5:29048065-29048084 MsG0580026011.01.T01:intron 5.0%
!!! ATTTTTTTTTTTTTTTATGT+GGG + Chr5:29048066-29048085 MsG0580026011.01.T01:intron 5.0%
!!! GTTTTTTTTTTTTTTTAATT+GGG + Chr5:29048325-29048344 MsG0580026011.01.T01:intron 5.0%
!!! TGTTTTTTTTTTTTTTTAAT+TGG + Chr5:29048324-29048343 MsG0580026011.01.T01:intron 5.0%
!!! TTTTTTTTTTTTTTTAATTG+GGG + Chr5:29048326-29048345 MsG0580026011.01.T01:intron 5.0%
AAAAGCAAAGGCTGGACCAG+TGG + Chr5:29053211-29053230 MsG0580026011.01.T01:CDS 50.0%
AACCAACAGGAATAGCACCG+CGG - Chr5:29051281-29051300 None:intergenic 50.0%
ACACGAACACCATCCCTTAC+AGG - Chr5:29047708-29047727 None:intergenic 50.0%
ACCAGTCATGCCGAGAAGAA+TGG - Chr5:29047631-29047650 None:intergenic 50.0%
ACCGGCAATGCTGTATGAGA+CGG + Chr5:29051441-29051460 MsG0580026011.01.T01:intron 50.0%
AGGATGTTGAAACCCTGGTG+GGG + Chr5:29052289-29052308 MsG0580026011.01.T01:intron 50.0%
ATCCCACTTAGCTATAGCGC+TGG - Chr5:29052858-29052877 None:intergenic 50.0%
CAACAAGCTTCGAAGCGGAA+TGG + Chr5:29047403-29047422 MsG0580026011.01.T01:CDS 50.0%
CAGCATTGCCGGTCTTACAT+AGG - Chr5:29051434-29051453 None:intergenic 50.0%
CATCACCTAGGAAGATGGAG+GGG + Chr5:29048655-29048674 MsG0580026011.01.T01:CDS 50.0%
CATTCCGCTTCGAAGCTTGT+TGG - Chr5:29047405-29047424 None:intergenic 50.0%
CCAACTGAGCTAAGTTCACG+AGG - Chr5:29050374-29050393 None:intergenic 50.0%
CCCTCCTTAACCCTTCATCA+TGG + Chr5:29050926-29050945 MsG0580026011.01.T01:intron 50.0%
CCTCGTGAACTTAGCTCAGT+TGG + Chr5:29050371-29050390 MsG0580026011.01.T01:intron 50.0%
CGGAGATGAGGATGTTGCAT+TGG + Chr5:29051509-29051528 MsG0580026011.01.T01:intron 50.0%
CTAGGTTCGAACCTGGACAA+AGG + Chr5:29048395-29048414 MsG0580026011.01.T01:intron 50.0%
CTGTTGAATGGGAGCCTGTA+AGG + Chr5:29047691-29047710 MsG0580026011.01.T01:intron 50.0%
CTTTGTCCAGGTTCGAACCT+AGG - Chr5:29048397-29048416 None:intergenic 50.0%
GAGGAAGAGACAGGGTTAGA+GGG + Chr5:29048792-29048811 MsG0580026011.01.T01:CDS 50.0%
GCATCACCTAGGAAGATGGA+GGG + Chr5:29048654-29048673 MsG0580026011.01.T01:CDS 50.0%
GCGAAAATCTGTGGCCAATG+TGG + Chr5:29052198-29052217 MsG0580026011.01.T01:intron 50.0%
GGAAGAGATGGCATAGAAGG+TGG + Chr5:29051951-29051970 MsG0580026011.01.T01:intron 50.0%
GGGCTTCTATGTCTTTGGCT+TGG + Chr5:29051098-29051117 MsG0580026011.01.T01:CDS 50.0%
GTAGAGATTACTGAGGGGGA+TGG + Chr5:29051764-29051783 MsG0580026011.01.T01:intron 50.0%
GTGAAGCTGAAGACGAGGTA+TGG + Chr5:29047726-29047745 MsG0580026011.01.T01:CDS 50.0%
TCCATTCTTCTCGGCATGAC+TGG + Chr5:29047627-29047646 MsG0580026011.01.T01:intron 50.0%
TCCGCATAGGACTGTTACTC+AGG + Chr5:29047808-29047827 MsG0580026011.01.T01:CDS 50.0%
TCCGTCTCATACAGCATTGC+CGG - Chr5:29051445-29051464 None:intergenic 50.0%
TGAGGAAGAGACAGGGTTAG+AGG + Chr5:29048791-29048810 MsG0580026011.01.T01:CDS 50.0%
TGCATCACCTAGGAAGATGG+AGG + Chr5:29048653-29048672 MsG0580026011.01.T01:CDS 50.0%
TGCGTCACAGTATTCCTCCA+CGG - Chr5:29047782-29047801 None:intergenic 50.0%
TGGAGAAGCTGCAAACGAAG+AGG - Chr5:29048861-29048880 None:intergenic 50.0%
TTCAGTGGCAAGAGAGTTGG+AGG + Chr5:29049489-29049508 MsG0580026011.01.T01:intron 50.0%
TTCGTGTGAAGCTGAAGACG+AGG + Chr5:29047721-29047740 MsG0580026011.01.T01:CDS 50.0%
TTTGTCGCTGTCCCATTTCC+CGG + Chr5:29053263-29053282 MsG0580026011.01.T01:CDS 50.0%
! AGTGAGTGATGAAGGTGTGC+AGG + Chr5:29048716-29048735 MsG0580026011.01.T01:CDS 50.0%
! GCTGTATGAGACGGAGTGTT+AGG + Chr5:29051450-29051469 MsG0580026011.01.T01:intron 50.0%
! GGTGGTTTGGGAATGTAGAG+AGG + Chr5:29051634-29051653 MsG0580026011.01.T01:intron 50.0%
! GTATGAGACGGAGTGTTAGG+TGG + Chr5:29051453-29051472 MsG0580026011.01.T01:intron 50.0%
! GTGAGTGATGAAGGTGTGCA+GGG + Chr5:29048717-29048736 MsG0580026011.01.T01:CDS 50.0%
! TGTTATGTCACGGCTCGGAT+GGG + Chr5:29052263-29052282 MsG0580026011.01.T01:intron 50.0%
! TTGGGGGTTAGGTAGCTCTA+TGG + Chr5:29048343-29048362 MsG0580026011.01.T01:intron 50.0%
!! AGGAAATGGGTTGGCCTGAT+TGG + Chr5:29051214-29051233 MsG0580026011.01.T01:intron 50.0%
!! GACTCTGCAATTTCTGGCTC+TGG + Chr5:29049309-29049328 MsG0580026011.01.T01:intron 50.0%
!! GCTTTGATTTGGGTAGGAGC+TGG - Chr5:29050983-29051002 None:intergenic 50.0%
!! GGAAATGGGTTGGCCTGATT+GGG + Chr5:29051215-29051234 MsG0580026011.01.T01:intron 50.0%
!!! GACGGACTGCTTTTGCTTTG+TGG - Chr5:29047436-29047455 None:intergenic 50.0%
AGCCACTGAAACTCCTCCAC+TGG - Chr5:29053230-29053249 None:intergenic 55.0%
ATGCTCCTGTGCCGGGAAAT+GGG - Chr5:29053277-29053296 None:intergenic 55.0%
ATTCGCCCCTCCATCTTCCT+AGG - Chr5:29048663-29048682 None:intergenic 55.0%
CCTTGCTTCCAAGAGCCCTT+CGG + Chr5:29053155-29053174 MsG0580026011.01.T01:CDS 55.0%
CTTCCTGTTCTTGAGCTCCG+CGG + Chr5:29051261-29051280 MsG0580026011.01.T01:intron 55.0%
GAATGGGAGCCTGTAAGGGA+TGG + Chr5:29047696-29047715 MsG0580026011.01.T01:intron 55.0%
GACCAGTGGAGGAGTTTCAG+TGG + Chr5:29053225-29053244 MsG0580026011.01.T01:CDS 55.0%
GATGCTAATGCTGCTGCTGC+TGG + Chr5:29051136-29051155 MsG0580026011.01.T01:CDS 55.0%
GATGGCATAGAAGGTGGGGT+AGG + Chr5:29051957-29051976 MsG0580026011.01.T01:intron 55.0%
GTCACAGTATTCCTCCACGG+TGG - Chr5:29047779-29047798 None:intergenic 55.0%
GTGGAGGAGTTTCAGTGGCT+TGG + Chr5:29053230-29053249 MsG0580026011.01.T01:CDS 55.0%
TAGCATGCCTTCTCCTGCTG+TGG + Chr5:29047904-29047923 MsG0580026011.01.T01:intron 55.0%
TAGTGGTCGGGTTTGAACCC+CGG - Chr5:29050427-29050446 None:intergenic 55.0%
TATCTCCTCTCACCCCACCA+GGG - Chr5:29052304-29052323 None:intergenic 55.0%
TCGAGGATCGTGATGCCGAA+GGG - Chr5:29053173-29053192 None:intergenic 55.0%
TGTCACGGTCACAATGTGCG+TGG + Chr5:29049283-29049302 MsG0580026011.01.T01:intron 55.0%
TTATCTCCTCTCACCCCACC+AGG - Chr5:29052305-29052324 None:intergenic 55.0%
! CTGTTATGTCACGGCTCGGA+TGG + Chr5:29052262-29052281 MsG0580026011.01.T01:intron 55.0%
! GCAAGAGAGTTGGAGGCACA+AGG + Chr5:29049496-29049515 MsG0580026011.01.T01:CDS 55.0%
! TGTCGTGGTGGCTTCTGAGA+CGG - Chr5:29047454-29047473 None:intergenic 55.0%
AGCAAAGGCTGGACCAGTGG+AGG + Chr5:29053214-29053233 MsG0580026011.01.T01:CDS 60.0%
CATGCTCCTGTGCCGGGAAA+TGG - Chr5:29053278-29053297 None:intergenic 60.0%
CATTTCCCGGCACAGGAGCA+TGG + Chr5:29053276-29053295 MsG0580026011.01.T01:CDS 60.0%
CCGAAGGGCTCTTGGAAGCA+AGG - Chr5:29053158-29053177 None:intergenic 60.0%
CTAGGAGGAGCAACCACAGC+AGG - Chr5:29047920-29047939 None:intergenic 60.0%
GGAGCAACCACAGCAGGAGA+AGG - Chr5:29047914-29047933 None:intergenic 60.0%
GTCGAGGATCGTGATGCCGA+AGG - Chr5:29053174-29053193 None:intergenic 60.0%
TCCAGACCATGCTCCTGTGC+CGG - Chr5:29053285-29053304 None:intergenic 60.0%
TCGTGATGCCGAAGGGCTCT+TGG - Chr5:29053166-29053185 None:intergenic 60.0%
TGAAACCCTGGTGGGGTGAG+AGG + Chr5:29052296-29052315 MsG0580026011.01.T01:intron 60.0%
! GTCACGGCTCGGATGGGTTT+AGG + Chr5:29052269-29052288 MsG0580026011.01.T01:intron 60.0%
!! CTCCGCGGTGCTATTCCTGT+TGG + Chr5:29051276-29051295 MsG0580026011.01.T01:CDS 60.0%
CCAGACCATGCTCCTGTGCC+GGG - Chr5:29053284-29053303 None:intergenic 65.0%
GCACCGCGGAGCTCAAGAAC+AGG - Chr5:29051267-29051286 None:intergenic 65.0%
GCTGTCCCATTTCCCGGCAC+AGG + Chr5:29053269-29053288 MsG0580026011.01.T01:CDS 65.0%
!! ATGGTGGGTTGCCACCGTGG+AGG + Chr5:29047765-29047784 MsG0580026011.01.T01:CDS 65.0%
!! GGAATGGTGGGTTGCCACCG+TGG + Chr5:29047762-29047781 MsG0580026011.01.T01:CDS 65.0%
! CCCGGCACAGGAGCATGGTC+TGG + Chr5:29053281-29053300 MsG0580026011.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 29047386 29053327 29047386 ID=MsG0580026011.01;Name=MsG0580026011.01
Chr5 mRNA 29047386 29053327 29047386 ID=MsG0580026011.01.T01;Parent=MsG0580026011.01;Name=MsG0580026011.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|0.66|0.85|7|0|357
Chr5 exon 29047386 29047545 29047386 ID=MsG0580026011.01.T01:exon:7089;Parent=MsG0580026011.01.T01
Chr5 exon 29047705 29047835 29047705 ID=MsG0580026011.01.T01:exon:7090;Parent=MsG0580026011.01.T01
Chr5 exon 29048642 29048821 29048642 ID=MsG0580026011.01.T01:exon:7091;Parent=MsG0580026011.01.T01
Chr5 exon 29049494 29049557 29049494 ID=MsG0580026011.01.T01:exon:7092;Parent=MsG0580026011.01.T01
Chr5 exon 29050984 29051222 29050984 ID=MsG0580026011.01.T01:exon:7093;Parent=MsG0580026011.01.T01
Chr5 exon 29051276 29051349 29051276 ID=MsG0580026011.01.T01:exon:7094;Parent=MsG0580026011.01.T01
Chr5 exon 29053102 29053327 29053102 ID=MsG0580026011.01.T01:exon:7095;Parent=MsG0580026011.01.T01
Chr5 CDS 29047386 29047545 29047386 ID=MsG0580026011.01.T01:cds;Parent=MsG0580026011.01.T01
Chr5 CDS 29047705 29047835 29047705 ID=MsG0580026011.01.T01:cds;Parent=MsG0580026011.01.T01
Chr5 CDS 29048642 29048821 29048642 ID=MsG0580026011.01.T01:cds;Parent=MsG0580026011.01.T01
Chr5 CDS 29049494 29049557 29049494 ID=MsG0580026011.01.T01:cds;Parent=MsG0580026011.01.T01
Chr5 CDS 29050984 29051222 29050984 ID=MsG0580026011.01.T01:cds;Parent=MsG0580026011.01.T01
Chr5 CDS 29051276 29051349 29051276 ID=MsG0580026011.01.T01:cds;Parent=MsG0580026011.01.T01
Chr5 CDS 29053102 29053327 29053102 ID=MsG0580026011.01.T01:cds;Parent=MsG0580026011.01.T01
Gene Sequence

>MsG0580026011.01.T01

ATGCAGACAACTAAACCCAACAAGCTTCGAAGCGGAATGGACTTCTTCCACAAAGCAAAAGCAGTCCGTCTCAGAAGCCACCACGACAAATATCTTCTAGCAGAAGAAGATGAAGAATCCGTTCACAAGGCAGAAACGGTTCATCAAACAACGCAAGATGCCTGTAAGGGATGGTGTTCGTGTGAAGCTGAAGACGAGGTATGGAATTTTCTTAGAGGGAATGGTGGGTTGCCACCGTGGAGGAATACTGTGACGCATGATATTCCGCATAGGACTGTTACTCAGGATTGGTCGAATGATGATGCATCACCTAGGAAGATGGAGGGGCGAATTATATACTACCATGTTGCTGAAGATGATGGAGAAGTGAGTGATGAAGGTGTGCAGGGATATTCTTTGGTTTTCAAAGGGAATGGAGTTGAGGAATTGAGCAAGAAGATTGAGGAAGAGACAGGGTTAGAGGGAATCATTTGGCAAGAGAGTTGGAGGCACAAGGTTATCTTTGAGAAGCCAGATTTTGCAACACATGGCCTTTCTCCTACCCAAATCAAAGCTTCTTCTACTGAATATTTGGATGCTATTGATGAACCTGAAAGGTTGATTTTTTACGAGGAAAAACCGGTGAAATTTGCTTTATGGGTTATTTTCTGGGCTTCTATGTCTTTGGCTTGGTTTGCTTATTCAAAGGATGCTAATGCTGCTGCTGCTGGTGCTGTTGATTCTATTAAAGCTTCTGGATTTGGATTGAAGATTGCGAATTCGTTGAGGAAATGGCTCCGCGGTGCTATTCCTGTTGGTTATTGGTTGCAACTTGATCCTGCAAGTTTGACTGTGTTATCCATTCTTGGGAACATGGTACCTGTGCCGTTCATCATACTCTACCTGAAACGATTTGCATCTTCCTTGCTTCCAAGAGCCCTTCGGCATCACGATCCTCGACATTCTGTTCAAGAATGCAAAAGCAAAGGCTGGACCAGTGGAGGAGTTTCAGTGGCTTGGTCTGATGCTCTTTGTCGCTGTCCCATTTCCCGGCACAGGAGCATGGTCTGGAGCCATTATAGCATCAATTCTTGA

Protein sequence

>MsG0580026011.01.T01

MQTTKPNKLRSGMDFFHKAKAVRLRSHHDKYLLAEEDEESVHKAETVHQTTQDACKGWCSCEAEDEVWNFLRGNGGLPPWRNTVTHDIPHRTVTQDWSNDDASPRKMEGRIIYYHVAEDDGEVSDEGVQGYSLVFKGNGVEELSKKIEEETGLEGIIWQESWRHKVIFEKPDFATHGLSPTQIKASSTEYLDAIDEPERLIFYEEKPVKFALWVIFWASMSLAWFAYSKDANAAAAGAVDSIKASGFGLKIANSLRKWLRGAIPVGYWLQLDPASLTVLSILGNMVPVPFIILYLKRFASSLLPRALRHHDPRHSVQECKSKGWTSGGVSVAWSDALCRCPISRHRSMVWSHYSINS*