Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0080048689.01.T01 | YP_009161335.1 | 100 | 161 | 0 | 0 | 1 | 161 | 1 | 161 | 1.91E-116 | 336 |
MsG0080048689.01.T02 | YP_009027321.1 | 100 | 135 | 0 | 0 | 1 | 135 | 27 | 161 | 3.08E-95 | 281 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0080048689.01.T01 | Q9BBP0 | 97.516 | 161 | 4 | 0 | 1 | 161 | 1 | 161 | 1.06E-116 | 329 |
MsG0080048689.01.T02 | Q9BBP0 | 97.778 | 135 | 3 | 0 | 1 | 135 | 27 | 161 | 2.98E-96 | 276 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0080048689.01.T01 | A0A023I716 | 100.000 | 161 | 0 | 0 | 1 | 161 | 1 | 161 | 1.01e-116 | 336 |
MsG0080048689.01.T01 | A0A0K0LU60 | 100.000 | 161 | 0 | 0 | 1 | 161 | 1 | 161 | 9.12e-117 | 336 |
MsG0080048689.01.T02 | A0A6M4E7D2 | 100.000 | 135 | 0 | 0 | 1 | 135 | 27 | 161 | 1.47e-95 | 281 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048560.01 | MsG0080048689.01 | 0.807471 | 4.974894e-50 | 2.773386e-47 |
MsG0080048611.01 | MsG0080048689.01 | 0.811255 | 7.669809e-51 | 4.724825e-48 |
MsG0080048689.01 | MsG0080048691.01 | 0.817942 | 2.537625e-52 | 1.873702e-49 |
MsG0080048689.01 | MsG0080048698.01 | 0.816598 | 5.090880e-52 | 3.623154e-49 |
MsG0080048689.01 | MsG0080049077.01 | 0.809693 | 1.667945e-50 | 9.859811e-48 |
MsG0080048689.01 | MsG0080049078.01 | 0.806913 | 6.530571e-50 | 3.588098e-47 |
MsG0080048689.01 | MsG0080049079.01 | 0.855522 | 5.964034e-62 | 1.380697e-58 |
MsG0080048689.01 | MsG0080049080.01 | 0.842921 | 1.924406e-58 | 2.961831e-55 |
MsG0080048689.01 | MsG0180000325.01 | 0.817100 | 3.928151e-52 | 2.834272e-49 |
MsG0080048689.01 | MsG0180001249.01 | 0.800075 | 1.708369e-48 | 7.881694e-46 |
MsG0080048689.01 | MsG0180003933.01 | 0.810152 | 1.328869e-50 | 7.950175e-48 |
MsG0080048689.01 | MsG0280007026.01 | 0.828945 | 6.778980e-55 | 6.837744e-52 |
MsG0080048689.01 | MsG0280007041.01 | 0.828786 | 7.405779e-55 | 7.435655e-52 |
MsG0080048689.01 | MsG0280007042.01 | 0.869475 | 3.011655e-66 | 1.131983e-62 |
MsG0080048689.01 | MsG0380012443.01 | 0.808708 | 2.712311e-50 | 1.561722e-47 |
MsG0080048689.01 | MsG0380012444.01 | 0.801565 | 8.481336e-49 | 4.063290e-46 |
MsG0080048689.01 | MsG0380013887.01 | 0.824238 | 8.994294e-54 | 7.921267e-51 |
MsG0080048689.01 | MsG0380013888.01 | 0.833001 | 6.850972e-56 | 7.787880e-53 |
MsG0080048689.01 | MsG0380013889.01 | 0.865376 | 6.175438e-65 | 2.004686e-61 |
MsG0080048689.01 | MsG0380013916.01 | 0.801495 | 8.763142e-49 | 4.191099e-46 |
MsG0080048689.01 | MsG0380013917.01 | 0.862809 | 3.896456e-64 | 1.156188e-60 |
MsG0080048689.01 | MsG0380013918.01 | 0.856797 | 2.522255e-62 | 6.090727e-59 |
MsG0080048689.01 | MsG0380013919.01 | 0.847423 | 1.167624e-59 | 2.074354e-56 |
MsG0080048689.01 | MsG0380013925.01 | 0.801351 | 9.382929e-49 | 4.471118e-46 |
MsG0080048689.01 | MsG0380013926.01 | 0.806443 | 8.207679e-50 | 4.455429e-47 |
MsG0080048689.01 | MsG0380013927.01 | 0.824470 | 7.933423e-54 | 7.033272e-51 |
MsG0080048689.01 | MsG0380013930.01 | 0.868413 | 6.651810e-66 | 2.403752e-62 |
MsG0080048689.01 | MsG0380013931.01 | 0.837593 | 4.742918e-57 | 6.190752e-54 |
MsG0080048689.01 | MsG0380013932.01 | 0.857686 | 1.377865e-62 | 3.429340e-59 |
MsG0080048689.01 | MsG0380013935.01 | 0.819516 | 1.114785e-52 | 8.597366e-50 |
MsG0080048689.01 | MsG0380013938.01 | 0.841441 | 4.743658e-58 | 6.971409e-55 |
MsG0080048689.01 | MsG0380013939.01 | 0.846716 | 1.823395e-59 | 3.167036e-56 |
MsG0080048689.01 | MsG0380013949.01 | 0.818407 | 1.991745e-52 | 1.489756e-49 |
MsG0080048689.01 | MsG0380013952.01 | 0.842280 | 2.847588e-58 | 4.296098e-55 |
MsG0080048689.01 | MsG0380013955.01 | 0.800639 | 1.311252e-48 | 6.136860e-46 |
MsG0080048689.01 | MsG0380013958.01 | 0.837041 | 6.566604e-57 | 8.427010e-54 |
MsG0080048689.01 | MsG0380013963.01 | 0.809592 | 1.753406e-50 | 1.033749e-47 |
MsG0080048689.01 | MsG0380013964.01 | 0.864380 | 1.267648e-64 | 3.972079e-61 |
MsG0080048689.01 | MsG0380013965.01 | 0.805568 | 1.253903e-49 | 6.655794e-47 |
MsG0080048689.01 | MsG0380013969.01 | 0.840794 | 7.016779e-58 | 1.010616e-54 |
MsG0080048689.01 | MsG0380013972.01 | 0.837074 | 6.441847e-57 | 8.274545e-54 |
MsG0080048689.01 | MsG0380013976.01 | 0.840879 | 6.664874e-58 | 9.624664e-55 |
MsG0080048689.01 | MsG0380013978.01 | 0.853036 | 3.115546e-61 | 6.640979e-58 |
MsG0080048689.01 | MsG0380013979.01 | 0.873850 | 1.068213e-67 | 4.704711e-64 |
MsG0080048689.01 | MsG0380013980.01 | 0.848824 | 4.791836e-60 | 8.904815e-57 |
MsG0080048689.01 | MsG0380013981.01 | 0.851846 | 6.802894e-61 | 1.394914e-57 |
MsG0080048689.01 | MsG0380013983.01 | 0.863346 | 2.658226e-64 | 8.033604e-61 |
MsG0080048689.01 | MsG0380013992.01 | 0.823262 | 1.522701e-53 | 1.304561e-50 |
MsG0080048689.01 | MsG0380013995.01 | 0.831107 | 2.013314e-55 | 2.163391e-52 |
MsG0080048689.01 | MsG0380013996.01 | 0.851390 | 9.156603e-61 | 1.850559e-57 |
MsG0080048689.01 | MsG0380013999.01 | 0.804411 | 2.188772e-49 | 1.127710e-46 |
MsG0080048689.01 | MsG0380014004.01 | 0.815512 | 8.900708e-52 | 6.149285e-49 |
MsG0080048689.01 | MsG0380014009.01 | 0.837244 | 5.826293e-57 | 7.522628e-54 |
MsG0080048689.01 | MsG0380014012.01 | 0.825209 | 5.309219e-54 | 4.808086e-51 |
MsG0080048689.01 | MsG0380014013.01 | 0.820803 | 5.654880e-53 | 4.520071e-50 |
MsG0080048689.01 | MsG0380014022.01 | 0.819157 | 1.345860e-52 | 1.027583e-49 |
MsG0080048689.01 | MsG0380014028.01 | 0.824804 | 6.619081e-54 | 5.925597e-51 |
MsG0080048689.01 | MsG0380014030.01 | 0.802004 | 6.889437e-49 | 3.337665e-46 |
MsG0080048689.01 | MsG0380014034.01 | 0.868971 | 4.390863e-66 | 1.619526e-62 |
MsG0080048689.01 | MsG0380014035.01 | 0.858513 | 7.824779e-63 | 2.002047e-59 |
MsG0080048689.01 | MsG0380014036.01 | 0.847634 | 1.021557e-59 | 1.827125e-56 |
MsG0080048689.01 | MsG0380014037.01 | 0.830964 | 2.182520e-55 | 2.335351e-52 |
MsG0080048689.01 | MsG0380014041.01 | 0.836284 | 1.024102e-56 | 1.284817e-53 |
MsG0080048689.01 | MsG0380014044.01 | 0.807488 | 4.931854e-50 | 2.750624e-47 |
MsG0080048689.01 | MsG0380014050.01 | 0.850288 | 1.870379e-60 | 3.645905e-57 |
MsG0080048689.01 | MsG0380014053.01 | 0.823233 | 1.546703e-53 | 1.324060e-50 |
MsG0080048689.01 | MsG0380014055.01 | 0.837282 | 5.699703e-57 | 7.367843e-54 |
MsG0080048689.01 | MsG0380015530.01 | 0.809201 | 2.126813e-50 | 1.240914e-47 |
MsG0080048689.01 | MsG0380016531.01 | 0.821212 | 4.553674e-53 | 3.681625e-50 |
MsG0080048689.01 | MsG0480018296.01 | 0.802145 | 6.446805e-49 | 3.134451e-46 |
MsG0080048689.01 | MsG0480022296.01 | 0.812044 | 5.167766e-51 | 3.250702e-48 |
MsG0080048689.01 | MsG0480023371.01 | 0.810617 | 1.054325e-50 | 6.385851e-48 |
MsG0080048689.01 | MsG0480023881.01 | 0.803422 | 3.513474e-49 | 1.764883e-46 |
MsG0080048689.01 | MsG0580024982.01 | 0.814672 | 1.367548e-51 | 9.234074e-49 |
MsG0080048689.01 | MsG0580027249.01 | 0.800942 | 1.137552e-48 | 5.365092e-46 |
MsG0080048689.01 | MsG0580028231.01 | 0.804629 | 1.970745e-49 | 1.021106e-46 |
MsG0080048689.01 | MsG0580029673.01 | 0.813284 | 2.766984e-51 | 1.799339e-48 |
MsG0080048689.01 | MsG0780037988.01 | 0.842866 | 1.990812e-58 | 3.058903e-55 |
MsG0080048689.01 | MsG0780039596.01 | 0.816153 | 6.404428e-52 | 4.503009e-49 |
MsG0080048689.01 | MsG0780039859.01 | 0.808320 | 3.281469e-50 | 1.870542e-47 |
MsG0080048689.01 | MsG0780040315.01 | 0.826991 | 2.001689e-54 | 1.907364e-51 |
MsG0080048689.01 | MsG0780040316.01 | 0.864988 | 8.181552e-65 | 2.619725e-61 |
MsG0080048689.01 | MsG0780040317.01 | 0.840205 | 1.000580e-57 | 1.415059e-54 |
MsG0080048689.01 | MsG0780041768.01 | 0.816235 | 6.138900e-52 | 4.325876e-49 |
MsG0080048689.01 | MsG0780041792.01 | 0.816636 | 4.992951e-52 | 3.557090e-49 |
MsG0080048689.01 | MsG0880043541.01 | 0.847389 | 1.192678e-59 | 2.116630e-56 |
MsG0080048689.01 | MsG0880044312.01 | 0.802804 | 4.715446e-49 | 2.331591e-46 |
MsG0080048689.01 | MsG0880044440.01 | 0.889502 | 2.286281e-73 | 1.849471e-69 |
MsG0080048689.01 | MsG0880045252.01 | 0.825668 | 4.133848e-54 | 3.792843e-51 |
MsG0080048689.01 | MsG0880045283.01 | 0.808718 | 2.699395e-50 | 1.554662e-47 |
MsG0080048689.01 | MsG0880045412.01 | 0.816535 | 5.261183e-52 | 3.737737e-49 |
MsG0080048689.01 | MsG0880047661.01 | 0.800024 | 1.750013e-48 | 8.063209e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0080048689.01.T01 | MTR_6g042210 | 99.379 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 1.28e-119 | 334 |
MsG0080048689.01.T01 | MTR_3g450170 | 99.379 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 1.28e-119 | 334 |
MsG0080048689.01.T01 | MTR_7g021700 | 99.379 | 161 | 1 | 0 | 1 | 161 | 475 | 635 | 3.47e-116 | 342 |
MsG0080048689.01.T01 | MTR_4g006100 | 99.379 | 161 | 1 | 0 | 1 | 161 | 739 | 899 | 5.30e-113 | 341 |
MsG0080048689.01.T01 | MTR_0002s0160 | 88.050 | 159 | 19 | 0 | 1 | 159 | 3 | 161 | 4.83e-106 | 304 |
MsG0080048689.01.T01 | MTR_3g054410 | 96.241 | 133 | 5 | 0 | 4 | 136 | 1 | 133 | 9.28e-94 | 268 |
MsG0080048689.01.T01 | MTR_4g050810 | 82.609 | 161 | 2 | 1 | 1 | 161 | 198 | 332 | 7.84e-91 | 268 |
MsG0080048689.01.T01 | MTR_5g015855 | 100.000 | 116 | 0 | 0 | 46 | 161 | 30 | 145 | 3.16e-84 | 244 |
MsG0080048689.01.T01 | MTR_5g063400 | 97.938 | 97 | 2 | 0 | 65 | 161 | 59 | 155 | 4.73e-67 | 201 |
MsG0080048689.01.T01 | MTR_8g086030 | 86.792 | 53 | 7 | 0 | 92 | 144 | 60 | 112 | 6.83e-28 | 100 |
MsG0080048689.01.T01 | MTR_4g070120 | 47.368 | 114 | 17 | 2 | 18 | 128 | 27 | 100 | 8.57e-23 | 88.2 |
MsG0080048689.01.T01 | MTR_8g010570 | 33.871 | 124 | 76 | 2 | 24 | 142 | 78 | 200 | 1.75e-15 | 71.2 |
MsG0080048689.01.T01 | MTR_8g010570 | 33.871 | 124 | 76 | 2 | 24 | 142 | 98 | 220 | 2.10e-15 | 71.2 |
MsG0080048689.01.T01 | MTR_8g010570 | 33.333 | 120 | 73 | 3 | 24 | 138 | 98 | 215 | 2.10e-14 | 68.2 |
MsG0080048689.01.T02 | MTR_6g042210 | 99.259 | 135 | 1 | 0 | 1 | 135 | 27 | 161 | 3.03e-98 | 279 |
MsG0080048689.01.T02 | MTR_3g450170 | 99.259 | 135 | 1 | 0 | 1 | 135 | 27 | 161 | 3.03e-98 | 279 |
MsG0080048689.01.T02 | MTR_7g021700 | 99.259 | 135 | 1 | 0 | 1 | 135 | 501 | 635 | 4.50e-95 | 286 |
MsG0080048689.01.T02 | MTR_4g006100 | 99.259 | 135 | 1 | 0 | 1 | 135 | 765 | 899 | 1.78e-92 | 286 |
MsG0080048689.01.T02 | MTR_0002s0160 | 90.769 | 130 | 12 | 0 | 4 | 133 | 32 | 161 | 1.50e-87 | 256 |
MsG0080048689.01.T02 | MTR_5g015855 | 100.000 | 116 | 0 | 0 | 20 | 135 | 30 | 145 | 6.85e-84 | 242 |
MsG0080048689.01.T02 | MTR_3g054410 | 95.455 | 110 | 5 | 0 | 1 | 110 | 24 | 133 | 7.69e-75 | 219 |
MsG0080048689.01.T02 | MTR_4g050810 | 79.259 | 135 | 2 | 1 | 1 | 135 | 224 | 332 | 1.57e-69 | 212 |
MsG0080048689.01.T02 | MTR_5g063400 | 97.938 | 97 | 2 | 0 | 39 | 135 | 59 | 155 | 1.17e-66 | 199 |
MsG0080048689.01.T02 | MTR_4g070120 | 57.843 | 102 | 6 | 3 | 1 | 102 | 36 | 100 | 1.91e-28 | 101 |
MsG0080048689.01.T02 | MTR_8g086030 | 86.792 | 53 | 7 | 0 | 66 | 118 | 60 | 112 | 4.80e-28 | 100 |
MsG0080048689.01.T02 | MTR_8g010570 | 34.711 | 121 | 73 | 2 | 1 | 116 | 81 | 200 | 2.78e-15 | 69.7 |
MsG0080048689.01.T02 | MTR_8g010570 | 34.711 | 121 | 73 | 2 | 1 | 116 | 101 | 220 | 2.83e-15 | 70.1 |
MsG0080048689.01.T02 | MTR_8g010570 | 34.188 | 117 | 70 | 3 | 1 | 112 | 101 | 215 | 2.61e-14 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0080048689.01.T01 | ATCG01090 | 93.671 | 158 | 10 | 0 | 1 | 158 | 1 | 158 | 9.91e-112 | 315 |
MsG0080048689.01.T01 | AT1G16700 | 36.364 | 110 | 64 | 2 | 38 | 142 | 92 | 200 | 3.99e-15 | 70.5 |
MsG0080048689.01.T01 | AT1G79010 | 36.364 | 110 | 64 | 2 | 38 | 142 | 92 | 200 | 4.91e-15 | 70.1 |
MsG0080048689.01.T02 | ATCG01090 | 96.212 | 132 | 5 | 0 | 1 | 132 | 27 | 158 | 1.19e-93 | 268 |
MsG0080048689.01.T02 | AT1G16700 | 36.364 | 110 | 64 | 2 | 12 | 116 | 92 | 200 | 4.20e-15 | 69.3 |
MsG0080048689.01.T02 | AT1G79010 | 36.364 | 110 | 64 | 2 | 12 | 116 | 92 | 200 | 4.38e-15 | 69.3 |
Find 24 sgRNAs with CRISPR-Local
Find 24 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCATTTATCAAATTCAAAA+TGG | 0.238267 | contig404end:-28702 | None:intergenic |
GATATGTTCCTTATGGTAAC+TGG | 0.277192 | contig404end:+28529 | None:intergenic |
AACTATAATCAAATTGCTTT+GGG | 0.280375 | contig404end:+28937 | MsG0080048689.01.T01:CDS |
CTAAATTACAGTATTGATTT+CGG | 0.292964 | contig404end:+28814 | MsG0080048689.01.T01:CDS |
TATTTACGATATGTTCCTTA+TGG | 0.293240 | contig404end:+28522 | None:intergenic |
TAAGGATATTGAATAGTTAC+AGG | 0.312119 | contig404end:-28640 | None:intergenic |
GAACTATAATCAAATTGCTT+TGG | 0.315151 | contig404end:+28936 | MsG0080048689.01.T01:CDS |
GTAACTGGGTTCATGAATTA+TGG | 0.358256 | contig404end:+28544 | MsG0080048689.01.T01:CDS |
TAGATTTACCCGTTGTTGAT+TGG | 0.366477 | contig404end:+28758 | MsG0080048689.01.T01:CDS |
ACCCGTTGTTGATTGGAAAC+TGG | 0.369567 | contig404end:+28765 | MsG0080048689.01.T01:CDS |
GTCATTGATAAACAATTTGT+TGG | 0.381894 | contig404end:-28874 | None:intergenic |
TCAACAACGGGTAAATCTAT+AGG | 0.423346 | contig404end:-28754 | None:intergenic |
TCATTGATAAACAATTTGTT+GGG | 0.458639 | contig404end:-28873 | None:intergenic |
CAATTACTGACATTGGTAAA+CGG | 0.469669 | contig404end:-28960 | None:intergenic |
TCCAGTTTCCAATCAACAAC+GGG | 0.472196 | contig404end:-28766 | None:intergenic |
TCATGAACCCAGTTACCATA+AGG | 0.530158 | contig404end:-28537 | None:intergenic |
TAATCATCAATTACTGACAT+TGG | 0.558627 | contig404end:-28967 | None:intergenic |
GACCAATGTACCTTGCAGCT+CGG | 0.566243 | contig404end:-28579 | None:intergenic |
GTCCGAGCTGCAAGGTACAT+TGG | 0.580316 | contig404end:+28577 | MsG0080048689.01.T01:CDS |
ATATGTTCCTTATGGTAACT+GGG | 0.594325 | contig404end:+28530 | None:intergenic |
ATCACATCGGAACGTTTCCG+CGG | 0.597937 | contig404end:+28673 | MsG0080048689.01.T01:CDS |
TTCCAGTTTCCAATCAACAA+CGG | 0.610406 | contig404end:-28767 | None:intergenic |
AACAAACAGTCCGAGCTGCA+AGG | 0.631261 | contig404end:+28569 | MsG0080048689.01.T01:CDS |
ATTCAAAATGGATTCGACCG+CGG | 0.695705 | contig404end:-28690 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATGAAAAATTAATCACAT+CGG | + | contig404end:28660-28679 | MsG0080048689.01.T01:CDS | 15.0% |
!! | AACTATAATCAAATTGCTTT+GGG | + | contig404end:28937-28956 | MsG0080048689.01.T01:CDS | 20.0% |
!! | TGCATTTATCAAATTCAAAA+TGG | - | contig404end:28705-28724 | None:intergenic | 20.0% |
!!! | CTAAATTACAGTATTGATTT+CGG | + | contig404end:28814-28833 | MsG0080048689.01.T01:CDS | 20.0% |
!!! | GATGTGATTAATTTTTCATA+AGG | - | contig404end:28661-28680 | None:intergenic | 20.0% |
!!! | TCATTGATAAACAATTTGTT+GGG | - | contig404end:28876-28895 | None:intergenic | 20.0% |
! | GAACTATAATCAAATTGCTT+TGG | + | contig404end:28936-28955 | MsG0080048689.01.T01:CDS | 25.0% |
! | GTCATTGATAAACAATTTGT+TGG | - | contig404end:28877-28896 | None:intergenic | 25.0% |
! | TAAGGATATTGAATAGTTAC+AGG | - | contig404end:28643-28662 | None:intergenic | 25.0% |
! | TAATCATCAATTACTGACAT+TGG | - | contig404end:28970-28989 | None:intergenic | 25.0% |
CAATTACTGACATTGGTAAA+CGG | - | contig404end:28963-28982 | None:intergenic | 30.0% | |
!!! | TTCGGAATCTGTATTTTTTG+TGG | + | contig404end:28832-28851 | MsG0080048689.01.T01:CDS | 30.0% |
GTAACTGGGTTCATGAATTA+TGG | + | contig404end:28544-28563 | MsG0080048689.01.T01:CDS | 35.0% | |
TAGATTTACCCGTTGTTGAT+TGG | + | contig404end:28758-28777 | MsG0080048689.01.T01:CDS | 35.0% | |
TCAACAACGGGTAAATCTAT+AGG | - | contig404end:28757-28776 | None:intergenic | 35.0% | |
TTCCAGTTTCCAATCAACAA+CGG | - | contig404end:28770-28789 | None:intergenic | 35.0% | |
TCATGAACCCAGTTACCATA+AGG | - | contig404end:28540-28559 | None:intergenic | 40.0% | |
TCCAGTTTCCAATCAACAAC+GGG | - | contig404end:28769-28788 | None:intergenic | 40.0% | |
! | ATTCAAAATGGATTCGACCG+CGG | - | contig404end:28693-28712 | None:intergenic | 40.0% |
! | ACCCGTTGTTGATTGGAAAC+TGG | + | contig404end:28765-28784 | MsG0080048689.01.T01:CDS | 45.0% |
AACAAACAGTCCGAGCTGCA+AGG | + | contig404end:28569-28588 | MsG0080048689.01.T01:CDS | 50.0% | |
ATCACATCGGAACGTTTCCG+CGG | + | contig404end:28673-28692 | MsG0080048689.01.T01:CDS | 50.0% | |
GACCAATGTACCTTGCAGCT+CGG | - | contig404end:28582-28601 | None:intergenic | 50.0% | |
GTCCGAGCTGCAAGGTACAT+TGG | + | contig404end:28577-28596 | MsG0080048689.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
contig404end | gene | 28532 | 29017 | 28532 | ID=MsG0080048689.01;Name=MsG0080048689.01 |
contig404end | mRNA | 28532 | 29017 | 28532 | ID=MsG0080048689.01.T01;Parent=MsG0080048689.01;Name=MsG0080048689.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|161 |
contig404end | exon | 28532 | 29017 | 28532 | ID=MsG0080048689.01.T01:exon:16632;Parent=MsG0080048689.01.T01 |
contig404end | CDS | 28532 | 29017 | 28532 | ID=MsG0080048689.01.T01:cds;Parent=MsG0080048689.01.T01 |
contig404end | mRNA | 28610 | 29017 | 28610 | ID=MsG0080048689.01.T02;Parent=MsG0080048689.01;Name=MsG0080048689.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|135 |
contig404end | exon | 28610 | 29017 | 28610 | ID=MsG0080048689.01.T02:exon:16633;Parent=MsG0080048689.01.T02 |
contig404end | CDS | 28610 | 29017 | 28610 | ID=MsG0080048689.01.T02:cds;Parent=MsG0080048689.01.T02 |
contig404end | mRNA | 28970 | 29017 | 28970 | ID=MsG0080048689.01.T03;Parent=MsG0080048689.01;Name=MsG0080048689.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|15 |
contig404end | exon | 28970 | 29017 | 28970 | ID=MsG0080048689.01.T03:exon:16634;Parent=MsG0080048689.01.T03 |
contig404end | CDS | 28970 | 29017 | 28970 | ID=MsG0080048689.01.T03:cds;Parent=MsG0080048689.01.T03 |
Gene Sequence |
Protein sequence |