Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018213.01.T01 | XP_003604269.1 | 92.547 | 161 | 7 | 2 | 1 | 156 | 1 | 161 | 4.68E-103 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018213.01.T01 | Q9SAG8 | 62.727 | 110 | 40 | 1 | 46 | 155 | 54 | 162 | 7.80E-47 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018213.01.T01 | B7FGF7 | 92.547 | 161 | 7 | 2 | 1 | 156 | 1 | 161 | 2.24e-103 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048197.01 | MsG0480018213.01 | 0.825790 | 3.867496e-54 | 3.560900e-51 |
| MsG0080048656.01 | MsG0480018213.01 | 0.801596 | 8.355281e-49 | 4.005925e-46 |
| MsG0180000271.01 | MsG0480018213.01 | 0.826679 | 2.377080e-54 | 2.244591e-51 |
| MsG0180001043.01 | MsG0480018213.01 | 0.812086 | 5.061191e-51 | 3.187514e-48 |
| MsG0180001599.01 | MsG0480018213.01 | 0.800545 | 1.370739e-48 | 6.399788e-46 |
| MsG0180001712.01 | MsG0480018213.01 | 0.823049 | 1.707358e-53 | 1.454125e-50 |
| MsG0180001922.01 | MsG0480018213.01 | 0.805361 | 1.385418e-49 | 7.315221e-47 |
| MsG0180002489.01 | MsG0480018213.01 | 0.822514 | 2.274958e-53 | 1.908334e-50 |
| MsG0180002491.01 | MsG0480018213.01 | 0.828573 | 8.340881e-55 | 8.323073e-52 |
| MsG0180003088.01 | MsG0480018213.01 | 0.849550 | 3.008636e-60 | 5.723750e-57 |
| MsG0180003252.01 | MsG0480018213.01 | 0.821653 | 3.601468e-53 | 2.947703e-50 |
| MsG0180003744.01 | MsG0480018213.01 | 0.800069 | 1.713423e-48 | 7.903776e-46 |
| MsG0180003984.01 | MsG0480018213.01 | 0.802246 | 6.143763e-49 | 2.994928e-46 |
| MsG0180004016.01 | MsG0480018213.01 | 0.805225 | 1.479359e-49 | 7.783663e-47 |
| MsG0180004128.01 | MsG0480018213.01 | 0.811647 | 6.305857e-51 | 3.924650e-48 |
| MsG0180004335.01 | MsG0480018213.01 | -0.802505 | 5.435672e-49 | 2.667167e-46 |
| MsG0180004398.01 | MsG0480018213.01 | 0.801201 | 1.006821e-48 | 4.779570e-46 |
| MsG0180004767.01 | MsG0480018213.01 | 0.814360 | 1.603167e-51 | 1.073397e-48 |
| MsG0180005106.01 | MsG0480018213.01 | 0.805395 | 1.362868e-49 | 7.202180e-47 |
| MsG0180006050.01 | MsG0480018213.01 | 0.801683 | 8.019055e-49 | 3.853274e-46 |
| MsG0280006411.01 | MsG0480018213.01 | 0.802381 | 5.763500e-49 | 2.819321e-46 |
| MsG0380011747.01 | MsG0480018213.01 | 0.801676 | 8.047489e-49 | 3.866254e-46 |
| MsG0380014330.01 | MsG0480018213.01 | 0.819058 | 1.417795e-52 | 1.079598e-49 |
| MsG0380015400.01 | MsG0480018213.01 | 0.812358 | 4.414392e-51 | 2.800799e-48 |
| MsG0380015404.01 | MsG0480018213.01 | 0.803764 | 2.983664e-49 | 1.511971e-46 |
| MsG0380017226.01 | MsG0480018213.01 | 0.816649 | 4.959969e-52 | 3.534971e-49 |
| MsG0380017512.01 | MsG0480018213.01 | 0.801866 | 7.355909e-49 | 3.551293e-46 |
| MsG0480018213.01 | MsG0480018321.01 | 0.814059 | 1.868322e-51 | 1.240796e-48 |
| MsG0480018213.01 | MsG0480018906.01 | 0.815120 | 1.088121e-51 | 7.436500e-49 |
| MsG0480018213.01 | MsG0480020318.01 | 0.802751 | 4.834924e-49 | 2.387427e-46 |
| MsG0480018213.01 | MsG0480021240.01 | 0.817180 | 3.769750e-52 | 2.725936e-49 |
| MsG0480018213.01 | MsG0480021464.01 | 0.819666 | 1.030331e-52 | 7.979150e-50 |
| MsG0480018213.01 | MsG0480021842.01 | 0.800356 | 1.497761e-48 | 6.959588e-46 |
| MsG0480018213.01 | MsG0480022678.01 | 0.808797 | 2.596063e-50 | 1.498288e-47 |
| MsG0480018213.01 | MsG0480022775.01 | 0.825944 | 3.556650e-54 | 3.289085e-51 |
| MsG0480018213.01 | MsG0580024191.01 | 0.827090 | 1.895072e-54 | 1.811020e-51 |
| MsG0480018213.01 | MsG0580025134.01 | 0.819061 | 1.414992e-52 | 1.077587e-49 |
| MsG0480018213.01 | MsG0580025520.01 | 0.805381 | 1.371825e-49 | 7.247070e-47 |
| MsG0480018213.01 | MsG0580025769.01 | 0.830609 | 2.666939e-55 | 2.823938e-52 |
| MsG0480018213.01 | MsG0580027034.01 | 0.820414 | 6.946416e-53 | 5.493050e-50 |
| MsG0480018213.01 | MsG0580028455.01 | 0.800870 | 1.176305e-48 | 5.537745e-46 |
| MsG0480018213.01 | MsG0580029658.01 | 0.831088 | 2.035126e-55 | 2.185623e-52 |
| MsG0480018213.01 | MsG0680030303.01 | 0.812323 | 4.491993e-51 | 2.847313e-48 |
| MsG0480018213.01 | MsG0680031536.01 | 0.804981 | 1.663767e-49 | 8.699618e-47 |
| MsG0480018213.01 | MsG0680031654.01 | 0.811306 | 7.479808e-51 | 4.613632e-48 |
| MsG0480018213.01 | MsG0680031694.01 | 0.812384 | 4.355661e-51 | 2.765464e-48 |
| MsG0480018213.01 | MsG0680031712.01 | 0.833180 | 6.184336e-56 | 7.067255e-53 |
| MsG0480018213.01 | MsG0680035048.01 | 0.807449 | 5.027215e-50 | 2.800926e-47 |
| MsG0480018213.01 | MsG0680035582.01 | 0.847210 | 1.335460e-59 | 2.356269e-56 |
| MsG0480018213.01 | MsG0780038911.01 | 0.825422 | 4.729489e-54 | 4.308675e-51 |
| MsG0480018213.01 | MsG0780039452.01 | 0.804608 | 1.990936e-49 | 1.031033e-46 |
| MsG0480018213.01 | MsG0780040125.01 | 0.818980 | 1.476971e-52 | 1.122373e-49 |
| MsG0480018213.01 | MsG0780040208.01 | 0.834738 | 2.519755e-56 | 3.016778e-53 |
| MsG0480018213.01 | MsG0780040424.01 | 0.828947 | 6.772277e-55 | 6.831328e-52 |
| MsG0480018213.01 | MsG0780040686.01 | 0.832103 | 1.144100e-55 | 1.266090e-52 |
| MsG0480018213.01 | MsG0780040858.01 | 0.806657 | 7.395568e-50 | 4.036386e-47 |
| MsG0480018213.01 | MsG0780040929.01 | 0.842569 | 2.386547e-58 | 3.633547e-55 |
| MsG0480018213.01 | MsG0780041223.01 | 0.809487 | 1.846903e-50 | 1.085754e-47 |
| MsG0480018213.01 | MsG0780041423.01 | 0.801338 | 9.437427e-49 | 4.495643e-46 |
| MsG0480018213.01 | MsG0880041969.01 | 0.806132 | 9.543196e-50 | 5.139494e-47 |
| MsG0480018213.01 | MsG0880043498.01 | 0.817332 | 3.483709e-52 | 2.529623e-49 |
| MsG0480018213.01 | MsG0880044409.01 | 0.812487 | 4.136239e-51 | 2.633417e-48 |
| MsG0480018213.01 | MsG0880045479.01 | 0.815292 | 9.963072e-52 | 6.841593e-49 |
| MsG0480018213.01 | MsG0880045951.01 | 0.809282 | 2.044046e-50 | 1.195143e-47 |
| MsG0480018213.01 | MsG0880046047.01 | 0.806156 | 9.433141e-50 | 5.083421e-47 |
| MsG0480018213.01 | MsG0880046058.01 | 0.831411 | 1.695363e-55 | 1.838170e-52 |
| MsG0480018213.01 | MsG0880046068.01 | 0.810171 | 1.316212e-50 | 7.878363e-48 |
| MsG0480018213.01 | MsG0880046088.01 | 0.829682 | 4.489361e-55 | 4.627967e-52 |
| MsG0480018213.01 | MsG0880046377.01 | 0.829814 | 4.170946e-55 | 4.316661e-52 |
| MsG0480018213.01 | MsG0880046733.01 | 0.802881 | 4.545117e-49 | 2.251705e-46 |
| MsG0280006519.01 | MsG0480018213.01 | 0.832666 | 8.299846e-56 | 9.340420e-53 |
| MsG0280006595.01 | MsG0480018213.01 | 0.826522 | 2.589980e-54 | 2.434645e-51 |
| MsG0280006596.01 | MsG0480018213.01 | 0.826575 | 2.516141e-54 | 2.368795e-51 |
| MsG0280006892.01 | MsG0480018213.01 | 0.806139 | 9.508306e-50 | 5.121763e-47 |
| MsG0280007439.01 | MsG0480018213.01 | 0.802483 | 5.490418e-49 | 2.692581e-46 |
| MsG0280007714.01 | MsG0480018213.01 | 0.802752 | 4.833362e-49 | 2.386706e-46 |
| MsG0280007775.01 | MsG0480018213.01 | 0.803431 | 3.498462e-49 | 1.757709e-46 |
| MsG0280007948.01 | MsG0480018213.01 | 0.818642 | 1.762118e-52 | 1.326391e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018213.01.T01 | MTR_4g007300 | 92.547 | 161 | 7 | 2 | 1 | 156 | 1 | 161 | 5.67e-107 | 302 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018213.01.T01 | AT1G80920 | 62.727 | 110 | 40 | 1 | 46 | 155 | 54 | 162 | 7.96e-48 | 152 |
| MsG0480018213.01.T01 | AT5G59610 | 29.167 | 144 | 86 | 3 | 11 | 144 | 43 | 180 | 5.43e-13 | 65.1 |
| MsG0480018213.01.T01 | AT5G59610 | 29.167 | 144 | 86 | 3 | 11 | 144 | 43 | 180 | 5.43e-13 | 65.1 |
Find 64 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTAACCAAACCTATTC+TGG | 0.118254 | 4:-1681891 | MsG0480018213.01.T01:five_prime_UTR |
| ACTACTGCTGTTGGTGTTAT+TGG | 0.156544 | 4:-1681648 | MsG0480018213.01.T01:CDS |
| ATTGAAGTTGAGAGGATATT+TGG | 0.182627 | 4:-1680381 | MsG0480018213.01.T01:three_prime_UTR |
| CCTTTAAGACAAAACTCTTC+TGG | 0.231115 | 4:-1681831 | MsG0480018213.01.T01:five_prime_UTR |
| CAAAGAGCACCAACCAAATT+TGG | 0.237220 | 4:+1680447 | None:intergenic |
| GTGTTAAATATTTCAAAGTT+TGG | 0.284170 | 4:-1681794 | MsG0480018213.01.T01:five_prime_UTR |
| ATGATCCAGATTGGGGCTAT+TGG | 0.284504 | 4:-1680620 | MsG0480018213.01.T01:CDS |
| TGAATTCTCAAAGTCTTATA+AGG | 0.285846 | 4:+1681516 | None:intergenic |
| AATAAAACCACCTCAAAGTT+TGG | 0.298635 | 4:-1681916 | MsG0480018213.01.T01:five_prime_UTR |
| AAAATAAGATGAATAAAGTT+AGG | 0.311546 | 4:-1681578 | MsG0480018213.01.T01:CDS |
| AATCATTATTTATTAGTGTT+TGG | 0.330931 | 4:-1682015 | MsG0480018213.01.T01:five_prime_UTR |
| CATAAACTTTATTAAATGTA+AGG | 0.334186 | 4:+1680540 | None:intergenic |
| TGTGTTCTTATCTTAAAGTT+TGG | 0.337765 | 4:-1681855 | MsG0480018213.01.T01:five_prime_UTR |
| CTTGTTTATAAGATTCCATT+TGG | 0.340253 | 4:+1680290 | None:intergenic |
| GTAATGGATCTTGTGTTTCA+TGG | 0.354259 | 4:-1681623 | MsG0480018213.01.T01:CDS |
| TCTCTTCCTTTGCACACATC+TGG | 0.358215 | 4:+1681275 | None:intergenic |
| TGATCCAGATTGGGGCTATT+GGG | 0.375755 | 4:-1680619 | MsG0480018213.01.T01:CDS |
| GTTGGTGTTATTGGTGGTAA+TGG | 0.380315 | 4:-1681639 | MsG0480018213.01.T01:CDS |
| CTGTTTCTTCTTTATCCAAA+TGG | 0.386265 | 4:-1680305 | MsG0480018213.01.T01:three_prime_UTR |
| GACAATGATGAGTCATTTAG+AGG | 0.388181 | 4:-1680648 | MsG0480018213.01.T01:CDS |
| CTTTAAGACAAAACTCTTCT+GGG | 0.391008 | 4:-1681830 | MsG0480018213.01.T01:five_prime_UTR |
| TGTTTCATGGATTGGAAGAA+AGG | 0.400791 | 4:-1681610 | MsG0480018213.01.T01:CDS |
| TCTTCCCAATAGCCCCAATC+TGG | 0.418268 | 4:+1680615 | None:intergenic |
| TTTGTAACCAAACCTATTCT+GGG | 0.422263 | 4:-1681890 | MsG0480018213.01.T01:five_prime_UTR |
| GGGCTATTGGGAAGAATGGA+TGG | 0.423463 | 4:-1680607 | MsG0480018213.01.T01:CDS |
| GAGGAATGAATGATCCAGAT+TGG | 0.426354 | 4:-1680629 | MsG0480018213.01.T01:CDS |
| ACAATGACCCAGAATAGGTT+TGG | 0.430276 | 4:+1681883 | None:intergenic |
| AGGAATGAATGATCCAGATT+GGG | 0.438090 | 4:-1680628 | MsG0480018213.01.T01:CDS |
| AATTCACAATGACCCAGAAT+AGG | 0.445431 | 4:+1681878 | None:intergenic |
| ATCATTGTCTTCATTATATG+TGG | 0.460660 | 4:+1680662 | None:intergenic |
| GGATCTTGTGTTTCATGGAT+TGG | 0.460943 | 4:-1681618 | MsG0480018213.01.T01:CDS |
| ATTGGGGCTATTGGGAAGAA+TGG | 0.464008 | 4:-1680611 | MsG0480018213.01.T01:CDS |
| TTCTGAATCTGATGTTAGAA+AGG | 0.473384 | 4:-1681484 | MsG0480018213.01.T01:CDS |
| AAATAAGATGAATAAAGTTA+GGG | 0.476392 | 4:-1681577 | MsG0480018213.01.T01:CDS |
| ATCTAAATCTTCTTCTGTGA+TGG | 0.478827 | 4:-1681541 | MsG0480018213.01.T01:CDS |
| TTGGGAAGAATGGATGGGTT+GGG | 0.486704 | 4:-1680601 | MsG0480018213.01.T01:CDS |
| ATTGGGAAGAATGGATGGGT+TGG | 0.503999 | 4:-1680602 | MsG0480018213.01.T01:CDS |
| TTCCTTTGCACACATCTGGA+TGG | 0.515608 | 4:+1681279 | None:intergenic |
| TTACAAAGAACCAAACTTTG+AGG | 0.519100 | 4:+1681906 | None:intergenic |
| ACTGCTGTTGGTGTTATTGG+TGG | 0.520448 | 4:-1681645 | MsG0480018213.01.T01:CDS |
| GGCTATTGGGAAGAATGGAT+GGG | 0.528910 | 4:-1680606 | MsG0480018213.01.T01:CDS |
| GTGTGCAAAGGAAGAGATTG+TGG | 0.529500 | 4:-1681269 | MsG0480018213.01.T01:CDS |
| GAGCACCAACCAAATTTGGA+TGG | 0.537248 | 4:+1680451 | None:intergenic |
| AGATATGACATACATTAACT+TGG | 0.538717 | 4:+1680414 | None:intergenic |
| AGCACCAACCAAATTTGGAT+GGG | 0.548146 | 4:+1680452 | None:intergenic |
| GAAGAATGGATGGGTTGGGA+AGG | 0.548816 | 4:-1680597 | MsG0480018213.01.T01:CDS |
| TGGATGGGTTGGGAAGGAGC+AGG | 0.559751 | 4:-1680591 | MsG0480018213.01.T01:CDS |
| TCTCAACTTCAATTATGTTG+AGG | 0.560994 | 4:+1680391 | None:intergenic |
| TGTGCAAAGGAAGAGATTGT+GGG | 0.575497 | 4:-1681268 | MsG0480018213.01.T01:CDS |
| GCAGTTTCACTTAATCAATG+AGG | 0.585631 | 4:-1681243 | MsG0480018213.01.T01:CDS |
| AATGGAATCTTATAAACAAG+AGG | 0.587710 | 4:-1680287 | MsG0480018213.01.T01:three_prime_UTR |
| ATGGCTGCTACTACTGCTGT+TGG | 0.598684 | 4:-1681657 | MsG0480018213.01.T01:CDS |
| TCAACATAATTGAAGTTGAG+AGG | 0.598925 | 4:-1680389 | MsG0480018213.01.T01:three_prime_UTR |
| GCACCAACCAAATTTGGATG+GGG | 0.605222 | 4:+1680453 | None:intergenic |
| CAAAGAACCAAACTTTGAGG+TGG | 0.605813 | 4:+1681909 | None:intergenic |
| GGTTGAAGAACAAAATAGAG+TGG | 0.607277 | 4:+1682057 | None:intergenic |
| TACCATCCAGATGTGTGCAA+AGG | 0.620033 | 4:-1681281 | MsG0480018213.01.T01:CDS |
| TAATATGAGAAGAGTAGTCA+CGG | 0.620194 | 4:+1680565 | None:intergenic |
| TAGAATTGGAACAATGGGCA+CGG | 0.629877 | 4:+1681960 | None:intergenic |
| GGAATGAATGATCCAGATTG+GGG | 0.639140 | 4:-1680627 | MsG0480018213.01.T01:CDS |
| ACATCAGATTCAGAAGCACC+AGG | 0.654245 | 4:+1681492 | None:intergenic |
| CACCAACCAAATTTGGATGG+GGG | 0.668622 | 4:+1680454 | None:intergenic |
| AAGACTTTGAGAATTCAACC+TGG | 0.677099 | 4:-1681510 | MsG0480018213.01.T01:CDS |
| GTGCAAAGGAAGAGATTGTG+GGG | 0.740567 | 4:-1681267 | MsG0480018213.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTGTTATAATTGTT+TGG | - | Chr4:1681207-1681226 | MsG0480018213.01.T01:intron | 10.0% |
| !! | ATGTATTAATATTGAATATT+TGG | - | Chr4:1681043-1681062 | MsG0480018213.01.T01:intron | 10.0% |
| !! | ATTTATTGTTATAATTGTTT+GGG | - | Chr4:1681208-1681227 | MsG0480018213.01.T01:intron | 10.0% |
| !! | TGTATTAATATTGAATATTT+GGG | - | Chr4:1681044-1681063 | MsG0480018213.01.T01:intron | 10.0% |
| !!! | TTTTAACAAAAAAAAATTCT+GGG | - | Chr4:1680599-1680618 | MsG0480018213.01.T01:CDS | 10.0% |
| !!! | TTTTAGATCATAAAAATATA+TGG | - | Chr4:1681242-1681261 | MsG0480018213.01.T01:CDS | 10.0% |
| !!! | TTTTTAACAAAAAAAAATTC+TGG | - | Chr4:1680598-1680617 | MsG0480018213.01.T01:CDS | 10.0% |
| !! | AAAATAAGATGAATAAAGTT+AGG | - | Chr4:1680788-1680807 | MsG0480018213.01.T01:intron | 15.0% |
| !! | AAATAAGATGAATAAAGTTA+GGG | - | Chr4:1680789-1680808 | MsG0480018213.01.T01:intron | 15.0% |
| !! | AATCATTATTTATTAGTGTT+TGG | - | Chr4:1680351-1680370 | MsG0480018213.01.T01:three_prime_UTR | 15.0% |
| !! | CATAAACTTTATTAAATGTA+AGG | + | Chr4:1681829-1681848 | None:intergenic | 15.0% |
| !! | CATAAATTTCAATTAGATAA+TGG | + | Chr4:1681611-1681630 | None:intergenic | 15.0% |
| !!! | AATTTGTTTTTATCTTCTTA+TGG | - | Chr4:1681543-1681562 | MsG0480018213.01.T01:CDS | 15.0% |
| !!! | ATTTGTTTTTATCTTCTTAT+GGG | - | Chr4:1681544-1681563 | MsG0480018213.01.T01:CDS | 15.0% |
| !!! | TTTATAACAAAGAGTTTTTT+GGG | - | Chr4:1680661-1680680 | MsG0480018213.01.T01:CDS | 15.0% |
| !!! | TTTTTTATTGTTTATGGTTT+TGG | - | Chr4:1681410-1681429 | MsG0480018213.01.T01:intron | 15.0% |
| !! | AACTATGCAATGAAAATTAA+AGG | + | Chr4:1681187-1681206 | None:intergenic | 20.0% |
| !! | ACAATAAAAAAAACTGGATT+TGG | + | Chr4:1681401-1681420 | None:intergenic | 20.0% |
| !! | CCATAAACAATAAAAAAAAC+TGG | + | Chr4:1681407-1681426 | None:intergenic | 20.0% |
| !! | GAGTTAGATATAAAAAAGTT+TGG | - | Chr4:1680635-1680654 | MsG0480018213.01.T01:CDS | 20.0% |
| !! | GTGTTAAATATTTCAAAGTT+TGG | - | Chr4:1680572-1680591 | MsG0480018213.01.T01:CDS | 20.0% |
| !! | GTTTATCAAGTTATAAATCT+TGG | + | Chr4:1681447-1681466 | None:intergenic | 20.0% |
| !! | TCAAACAAATCATTAAACTA+TGG | + | Chr4:1681571-1681590 | None:intergenic | 20.0% |
| !!! | AATTTATGTGTTGCTTATAT+TGG | - | Chr4:1681623-1681642 | MsG0480018213.01.T01:CDS | 20.0% |
| !!! | ACTAATTTGATTGATGATTT+TGG | - | Chr4:1680954-1680973 | MsG0480018213.01.T01:intron | 20.0% |
| !!! | AGAATTTGTGATTTTAAGAA+TGG | - | Chr4:1680690-1680709 | MsG0480018213.01.T01:CDS | 20.0% |
| !!! | CCAGTTTTTTTTATTGTTTA+TGG | - | Chr4:1681404-1681423 | MsG0480018213.01.T01:intron | 20.0% |
| !!! | CTTTATAACAAAGAGTTTTT+TGG | - | Chr4:1680660-1680679 | MsG0480018213.01.T01:CDS | 20.0% |
| !!! | GAAGATATTGTTTTTAGAAT+TGG | + | Chr4:1680423-1680442 | None:intergenic | 20.0% |
| !!! | GTTGTTTTATTTCAAATCAA+TGG | + | Chr4:1681343-1681362 | None:intergenic | 20.0% |
| !!! | TTTTACATTTTCTCTCAAAT+TGG | + | Chr4:1681668-1681687 | None:intergenic | 20.0% |
| ! | AATGGAATCTTATAAACAAG+AGG | - | Chr4:1682079-1682098 | MsG0480018213.01.T01:five_prime_UTR | 25.0% |
| ! | AGATATGACATACATTAACT+TGG | + | Chr4:1681955-1681974 | None:intergenic | 25.0% |
| ! | ATCATTGTCTTCATTATATG+TGG | + | Chr4:1681707-1681726 | None:intergenic | 25.0% |
| ! | ATTGGAGATATAAGATCAAT+GGG | - | Chr4:1681277-1681296 | MsG0480018213.01.T01:CDS | 25.0% |
| ! | CATTATACATGAAGAAAGAA+AGG | + | Chr4:1681026-1681045 | None:intergenic | 25.0% |
| ! | CTTGTTTATAAGATTCCATT+TGG | + | Chr4:1682079-1682098 | None:intergenic | 25.0% |
| ! | TGTGTTCTTATCTTAAAGTT+TGG | - | Chr4:1680511-1680530 | MsG0480018213.01.T01:three_prime_UTR | 25.0% |
| !! | ATATGGATATTGATTGACAT+TGG | - | Chr4:1681259-1681278 | MsG0480018213.01.T01:CDS | 25.0% |
| !! | TGAATTCTCAAAGTCTTATA+AGG | + | Chr4:1680853-1680872 | None:intergenic | 25.0% |
| !! | TGGATTTGTAATCTTGATTT+TGG | - | Chr4:1680974-1680993 | MsG0480018213.01.T01:intron | 25.0% |
| !!! | AGTTGATTTTGATTTTGATG+TGG | + | Chr4:1680384-1680403 | None:intergenic | 25.0% |
| !!! | GTTTTTAGAATTGGAACAAT+GGG | + | Chr4:1680414-1680433 | None:intergenic | 25.0% |
| !!! | TGTTTTTAGAATTGGAACAA+TGG | + | Chr4:1680415-1680434 | None:intergenic | 25.0% |
| AATAAAACCACCTCAAAGTT+TGG | - | Chr4:1680450-1680469 | MsG0480018213.01.T01:three_prime_UTR | 30.0% | |
| ATCTAAATCTTCTTCTGTGA+TGG | - | Chr4:1680825-1680844 | MsG0480018213.01.T01:intron | 30.0% | |
| ATTGAAGTTGAGAGGATATT+TGG | - | Chr4:1681985-1682004 | MsG0480018213.01.T01:five_prime_UTR | 30.0% | |
| CATTGGAGATATAAGATCAA+TGG | - | Chr4:1681276-1681295 | MsG0480018213.01.T01:CDS | 30.0% | |
| TAATATGAGAAGAGTAGTCA+CGG | + | Chr4:1681804-1681823 | None:intergenic | 30.0% | |
| TCAACATAATTGAAGTTGAG+AGG | - | Chr4:1681977-1681996 | MsG0480018213.01.T01:five_prime_UTR | 30.0% | |
| TCTCAACTTCAATTATGTTG+AGG | + | Chr4:1681978-1681997 | None:intergenic | 30.0% | |
| TGTGACACAATTATTGATCT+TGG | + | Chr4:1681365-1681384 | None:intergenic | 30.0% | |
| TTACAAAGAACCAAACTTTG+AGG | + | Chr4:1680463-1680482 | None:intergenic | 30.0% | |
| TTCTGAATCTGATGTTAGAA+AGG | - | Chr4:1680882-1680901 | MsG0480018213.01.T01:intron | 30.0% | |
| TTTGTAACCAAACCTATTCT+GGG | - | Chr4:1680476-1680495 | MsG0480018213.01.T01:three_prime_UTR | 30.0% | |
| ! | CTGTTTCTTCTTTATCCAAA+TGG | - | Chr4:1682061-1682080 | MsG0480018213.01.T01:five_prime_UTR | 30.0% |
| ! | GGATAGCTTAGAGAAATTTT+AGG | + | Chr4:1681166-1681185 | None:intergenic | 30.0% |
| !! | CTTTAAGACAAAACTCTTCT+GGG | - | Chr4:1680536-1680555 | MsG0480018213.01.T01:exon | 30.0% |
| !!! | ACTTTGAGGTGGTTTTATTA+AGG | + | Chr4:1680449-1680468 | None:intergenic | 30.0% |
| AATTCACAATGACCCAGAAT+AGG | + | Chr4:1680491-1680510 | None:intergenic | 35.0% | |
| AGGAATGAATGATCCAGATT+GGG | - | Chr4:1681738-1681757 | MsG0480018213.01.T01:five_prime_UTR | 35.0% | |
| CTTCTCATCTATGGTTTCAT+TGG | + | Chr4:1681513-1681532 | None:intergenic | 35.0% | |
| CTTTGTAACCAAACCTATTC+TGG | - | Chr4:1680475-1680494 | MsG0480018213.01.T01:three_prime_UTR | 35.0% | |
| GACAATGATGAGTCATTTAG+AGG | - | Chr4:1681718-1681737 | MsG0480018213.01.T01:five_prime_UTR | 35.0% | |
| GCAGTTTCACTTAATCAATG+AGG | - | Chr4:1681123-1681142 | MsG0480018213.01.T01:intron | 35.0% | |
| GGTTGAAGAACAAAATAGAG+TGG | + | Chr4:1680312-1680331 | None:intergenic | 35.0% | |
| ! | AAGACTTTGAGAATTCAACC+TGG | - | Chr4:1680856-1680875 | MsG0480018213.01.T01:intron | 35.0% |
| !! | CCAGAAGAGTTTTGTCTTAA+AGG | + | Chr4:1680538-1680557 | None:intergenic | 35.0% |
| !! | CCTTTAAGACAAAACTCTTC+TGG | - | Chr4:1680535-1680554 | MsG0480018213.01.T01:exon | 35.0% |
| !! | CTTTTGTTGCTTCTCATCTA+TGG | + | Chr4:1681522-1681541 | None:intergenic | 35.0% |
| !! | GTAATGGATCTTGTGTTTCA+TGG | - | Chr4:1680743-1680762 | MsG0480018213.01.T01:intron | 35.0% |
| !! | TGTTTCATGGATTGGAAGAA+AGG | - | Chr4:1680756-1680775 | MsG0480018213.01.T01:intron | 35.0% |
| !! | TTTTAGACAACTTGCTTTGC+AGG | - | Chr4:1680906-1680925 | MsG0480018213.01.T01:intron | 35.0% |
| ACAATGACCCAGAATAGGTT+TGG | + | Chr4:1680486-1680505 | None:intergenic | 40.0% | |
| AGCACCAACCAAATTTGGAT+GGG | + | Chr4:1681917-1681936 | None:intergenic | 40.0% | |
| GAGGAATGAATGATCCAGAT+TGG | - | Chr4:1681737-1681756 | MsG0480018213.01.T01:five_prime_UTR | 40.0% | |
| GGAATGAATGATCCAGATTG+GGG | - | Chr4:1681739-1681758 | MsG0480018213.01.T01:five_prime_UTR | 40.0% | |
| GGATCTTGTGTTTCATGGAT+TGG | - | Chr4:1680748-1680767 | MsG0480018213.01.T01:intron | 40.0% | |
| TAGAATTGGAACAATGGGCA+CGG | + | Chr4:1680409-1680428 | None:intergenic | 40.0% | |
| TGTGCAAAGGAAGAGATTGT+GGG | - | Chr4:1681098-1681117 | MsG0480018213.01.T01:intron | 40.0% | |
| ! | CAAAGAACCAAACTTTGAGG+TGG | + | Chr4:1680460-1680479 | None:intergenic | 40.0% |
| !! | ACTACTGCTGTTGGTGTTAT+TGG | - | Chr4:1680718-1680737 | MsG0480018213.01.T01:intron | 40.0% |
| !! | CAAAGAGCACCAACCAAATT+TGG | + | Chr4:1681922-1681941 | None:intergenic | 40.0% |
| !! | GTTGGTGTTATTGGTGGTAA+TGG | - | Chr4:1680727-1680746 | MsG0480018213.01.T01:intron | 40.0% |
| AGTTGTCCCCCATCCAAATT+TGG | - | Chr4:1681906-1681925 | MsG0480018213.01.T01:five_prime_UTR | 45.0% | |
| ATGATCCAGATTGGGGCTAT+TGG | - | Chr4:1681746-1681765 | MsG0480018213.01.T01:five_prime_UTR | 45.0% | |
| ATTGGGAAGAATGGATGGGT+TGG | - | Chr4:1681764-1681783 | MsG0480018213.01.T01:five_prime_UTR | 45.0% | |
| ATTGGGGCTATTGGGAAGAA+TGG | - | Chr4:1681755-1681774 | MsG0480018213.01.T01:five_prime_UTR | 45.0% | |
| CACCAACCAAATTTGGATGG+GGG | + | Chr4:1681915-1681934 | None:intergenic | 45.0% | |
| GAGCACCAACCAAATTTGGA+TGG | + | Chr4:1681918-1681937 | None:intergenic | 45.0% | |
| GCACCAACCAAATTTGGATG+GGG | + | Chr4:1681916-1681935 | None:intergenic | 45.0% | |
| GGCTATTGGGAAGAATGGAT+GGG | - | Chr4:1681760-1681779 | MsG0480018213.01.T01:five_prime_UTR | 45.0% | |
| GTGCAAAGGAAGAGATTGTG+GGG | - | Chr4:1681099-1681118 | MsG0480018213.01.T01:intron | 45.0% | |
| GTGTGCAAAGGAAGAGATTG+TGG | - | Chr4:1681097-1681116 | MsG0480018213.01.T01:intron | 45.0% | |
| TACCATCCAGATGTGTGCAA+AGG | - | Chr4:1681085-1681104 | MsG0480018213.01.T01:intron | 45.0% | |
| TCTCTTCCTTTGCACACATC+TGG | + | Chr4:1681094-1681113 | None:intergenic | 45.0% | |
| TGATCCAGATTGGGGCTATT+GGG | - | Chr4:1681747-1681766 | MsG0480018213.01.T01:five_prime_UTR | 45.0% | |
| TTCCTTTGCACACATCTGGA+TGG | + | Chr4:1681090-1681109 | None:intergenic | 45.0% | |
| ! | TTGGGAAGAATGGATGGGTT+GGG | - | Chr4:1681765-1681784 | MsG0480018213.01.T01:five_prime_UTR | 45.0% |
| !! | ACATCAGATTCAGAAGCACC+AGG | + | Chr4:1680877-1680896 | None:intergenic | 45.0% |
| !! | ACTGCTGTTGGTGTTATTGG+TGG | - | Chr4:1680721-1680740 | MsG0480018213.01.T01:intron | 45.0% |
| !!! | TTTTGATTTTTTTTAAAAAT+AGG | + | Chr4:1680333-1680352 | None:intergenic | 5.0% |
| ATGGCTGCTACTACTGCTGT+TGG | - | Chr4:1680709-1680728 | MsG0480018213.01.T01:CDS | 50.0% | |
| GGGCTATTGGGAAGAATGGA+TGG | - | Chr4:1681759-1681778 | MsG0480018213.01.T01:five_prime_UTR | 50.0% | |
| GTCCCCCATCCAAATTTGGT+TGG | - | Chr4:1681910-1681929 | MsG0480018213.01.T01:five_prime_UTR | 50.0% | |
| TCTTCCCAATAGCCCCAATC+TGG | + | Chr4:1681754-1681773 | None:intergenic | 50.0% | |
| TTGGATGGGGGACAACTAGT+AGG | + | Chr4:1681903-1681922 | None:intergenic | 50.0% | |
| !! | GAAGAATGGATGGGTTGGGA+AGG | - | Chr4:1681769-1681788 | MsG0480018213.01.T01:five_prime_UTR | 50.0% |
| !! | TGGATGGGTTGGGAAGGAGC+AGG | - | Chr4:1681775-1681794 | MsG0480018213.01.T01:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 1680282 | 1682106 | 1680282 | ID=MsG0480018213.01;Name=MsG0480018213.01 |
| Chr4 | mRNA | 1680282 | 1682106 | 1680282 | ID=MsG0480018213.01.T01;Parent=MsG0480018213.01;Name=MsG0480018213.01.T01;_AED=0.20;_eAED=0.20;_QI=427|1|1|1|1|1|3|269|156 |
| Chr4 | exon | 1680282 | 1680733 | 1680282 | ID=MsG0480018213.01.T01:exon:568;Parent=MsG0480018213.01.T01 |
| Chr4 | exon | 1681235 | 1681303 | 1681235 | ID=MsG0480018213.01.T01:exon:567;Parent=MsG0480018213.01.T01 |
| Chr4 | exon | 1681461 | 1682106 | 1681461 | ID=MsG0480018213.01.T01:exon:566;Parent=MsG0480018213.01.T01 |
| Chr4 | five_prime_UTR | 1681680 | 1682106 | 1681680 | ID=MsG0480018213.01.T01:five_prime_utr;Parent=MsG0480018213.01.T01 |
| Chr4 | CDS | 1681461 | 1681679 | 1681461 | ID=MsG0480018213.01.T01:cds;Parent=MsG0480018213.01.T01 |
| Chr4 | CDS | 1681235 | 1681303 | 1681235 | ID=MsG0480018213.01.T01:cds;Parent=MsG0480018213.01.T01 |
| Chr4 | CDS | 1680551 | 1680733 | 1680551 | ID=MsG0480018213.01.T01:cds;Parent=MsG0480018213.01.T01 |
| Chr4 | three_prime_UTR | 1680282 | 1680550 | 1680282 | ID=MsG0480018213.01.T01:three_prime_utr;Parent=MsG0480018213.01.T01 |
| Gene Sequence |
| Protein sequence |
