AlfalfaGEDB | MsG0880046088.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046088.01

KEGG: -
GO: -
PFAM: PF02493

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046088.01.T01	XP_013457568.1	96.941	425	7	1	1	419	1	425	0	856

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046088.01.T01	Q56YP2	37.059	170	107	0	167	336	77	246	2.97E-27	117

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046088.01.T01	A0A072UP26	96.941	425	7	1	1	419	1	425	0.0	856

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048197.01	MsG0880046088.01	0.801093	1.059193e-48	5.014923e-46
MsG0180000673.01	MsG0880046088.01	0.807645	4.567650e-50	2.557776e-47
MsG0180001043.01	MsG0880046088.01	0.813000	3.193064e-51	2.060591e-48
MsG0180001795.01	MsG0880046088.01	0.822822	1.928077e-53	1.631608e-50
MsG0180002489.01	MsG0880046088.01	0.812434	4.247807e-51	2.700742e-48
MsG0180002491.01	MsG0880046088.01	0.833933	4.011373e-56	4.689232e-53
MsG0180002912.01	MsG0880046088.01	0.833433	5.349051e-56	6.159163e-53
MsG0180003088.01	MsG0880046088.01	0.866615	2.505483e-65	8.497616e-62
MsG0180003593.01	MsG0880046088.01	0.816823	4.532848e-52	3.245928e-49
MsG0180004079.01	MsG0880046088.01	0.813506	2.472802e-51	1.617889e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046088.01.T01	MTR_4g099180	96.941	425	7	1	1	419	1	425	0.0	856
MsG0880046088.01.T01	MTR_4g099180	95.486	288	7	1	1	282	1	288	0.0	563
MsG0880046088.01.T01	MTR_4g099180	95.819	287	6	1	1	281	1	287	0.0	563
MsG0880046088.01.T01	MTR_7g451440	56.637	452	148	8	5	417	2	444	1.06e-154	445
MsG0880046088.01.T01	MTR_8g007500	68.340	259	81	1	162	419	193	451	2.57e-117	350
MsG0880046088.01.T01	MTR_3g072650	51.786	336	130	6	86	412	109	421	1.24e-101	309
MsG0880046088.01.T01	MTR_5g058920	53.079	341	113	7	101	412	111	433	2.01e-101	309
MsG0880046088.01.T01	MTR_3g072650	54.478	268	100	5	86	344	109	363	3.60e-97	296
MsG0880046088.01.T01	MTR_8g080860	37.500	200	102	2	163	339	17	216	7.88e-31	120
MsG0880046088.01.T01	MTR_8g080860	33.168	202	112	1	164	342	41	242	4.39e-27	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046088.01.T01	AT4G17080	57.398	392	129	5	42	410	125	501	1.29e-141	414
MsG0880046088.01.T01	AT2G35170	58.235	340	119	6	70	386	107	446	2.95e-131	387
MsG0880046088.01.T01	AT1G21920	54.180	323	132	3	96	412	98	410	1.00e-101	309
MsG0880046088.01.T01	AT1G21920	57.540	252	101	2	96	341	98	349	1.28e-98	299
MsG0880046088.01.T01	AT1G77660	54.180	323	129	6	99	412	102	414	2.03e-96	295
MsG0880046088.01.T01	AT1G21980	37.059	170	107	0	167	336	77	246	3.03e-28	117
MsG0880046088.01.T01	AT1G21980	37.500	128	80	0	214	341	78	205	2.79e-19	90.9
MsG0880046088.01.T01	AT1G21980	30.370	135	93	1	165	298	121	255	6.32e-12	68.2
MsG0880046088.01.T01	AT2G41210	36.207	174	111	0	163	336	67	240	1.33e-27	115
MsG0880046088.01.T01	AT2G41210	38.281	128	79	0	214	341	72	199	1.89e-20	94.4

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Find 130 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAGACAGTCATATT+GGG	0.421127	8:-68901835	MsG0880046088.01.T01:CDS
AAAATAGATAGCAATGAAAA+TGG	0.298430	8:+68904092	None:intergenic
AAAATCCAAACAGAACACTC+AGG	0.667979	8:-68904312	None:intergenic
AAAATTACCAAAGTTAGTAT+AGG	0.349413	8:-68900576	MsG0880046088.01.T01:three_prime_UTR
AAACGTGGGCTAGAGGAAGT+AGG	0.599270	8:-68903438	MsG0880046088.01.T01:CDS
AAATTACCAAAGTTAGTATA+GGG	0.344865	8:-68900575	MsG0880046088.01.T01:three_prime_UTR
AACAAACAGTTTCTAAGCTC+CGG	0.463116	8:-68904227	MsG0880046088.01.T01:five_prime_UTR
AACAAATCTGATTCTGAAAT+CGG	0.341623	8:-68904045	MsG0880046088.01.T01:CDS
AACGTGTTGTATGGTCAATT+GGG	0.503626	8:-68903645	MsG0880046088.01.T01:CDS
AAGAGAAAATCAAGAAGAGT+TGG	0.478692	8:+68903763	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGCAAGACAGTCATAT+TGG	-	Chr8:68902870-68902889	MsG0880046088.01.T01:intron	30.0%
AAAAGCAAGACAGTCATATT+GGG	-	Chr8:68902871-68902890	MsG0880046088.01.T01:intron	30.0%
AAGAGAAAATCAAGAAGAGT+TGG	+	Chr8:68900946-68900965	None:intergenic	30.0%
ATAGAATTGATTATGCCTCT+TGG	-	Chr8:68904221-68904240	MsG0880046088.01.T01:five_prime_UTR	30.0%
ATCCAAAAATGACTATTACC+TGG	+	Chr8:68902938-68902957	None:intergenic	30.0%
ATTAACCACGATTCAGTATT+TGG	-	Chr8:68902252-68902271	MsG0880046088.01.T01:intron	30.0%
ATTATGTTGGGGAATTCAAA+TGG	-	Chr8:68901427-68901446	MsG0880046088.01.T01:intron	30.0%
CTTGAAAGATTGAAACTTTG+AGG	+	Chr8:68900857-68900876	None:intergenic	30.0%
GAGTTAAAGAGCTTAAATTC+TGG	-	Chr8:68901096-68901115	MsG0880046088.01.T01:CDS	30.0%
GGTTGAGACATTATATAGTT+TGG	+	Chr8:68902352-68902371	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	68900405	68904323	68900405	ID=MsG0880046088.01;Name=MsG0880046088.01
Chr8	mRNA	68900405	68904323	68900405	ID=MsG0880046088.01.T01;Parent=MsG0880046088.01;Name=MsG0880046088.01.T01;_AED=0.45;_eAED=0.45;_QI=238\|1\|1\|1\|1\|1\|3\|603\|419
Chr8	exon	68900405	68901166	68900405	ID=MsG0880046088.01.T01:exon:773;Parent=MsG0880046088.01.T01
Chr8	exon	68901790	68902048	68901790	ID=MsG0880046088.01.T01:exon:772;Parent=MsG0880046088.01.T01
Chr8	exon	68903244	68904323	68903244	ID=MsG0880046088.01.T01:exon:771;Parent=MsG0880046088.01.T01
Chr8	five_prime_UTR	68904086	68904323	68904086	ID=MsG0880046088.01.T01:five_prime_utr;Parent=MsG0880046088.01.T01
Chr8	CDS	68903244	68904085	68903244	ID=MsG0880046088.01.T01:cds;Parent=MsG0880046088.01.T01
Chr8	CDS	68901790	68902048	68901790	ID=MsG0880046088.01.T01:cds;Parent=MsG0880046088.01.T01
Chr8	CDS	68901008	68901166	68901008	ID=MsG0880046088.01.T01:cds;Parent=MsG0880046088.01.T01
Chr8	three_prime_UTR	68900405	68901007	68900405	ID=MsG0880046088.01.T01:three_prime_utr;Parent=MsG0880046088.01.T01

Gene Sequence

>MsG0880046088.01.T01

ATGTTAATGCGTCACCTTAACAAATCTGATTCTGAAATCGGAAAAGAAAATTTCAATCTTTCTTCCGATTTCACTCATTTTTCAATCCAAGTTACTCCTCATCATTTTCACCATGAACAACGCTTCTCAAGCAACACTCCATCTTCACCATCTCATACACCTACACACAACAAAACCCATCAAAACAAACCTTCTTTTACAATACCCTTTACCTCAAAGTTTCAATCTTTCAAGCTTCTCACACGTTTTCATTTCATCATCTTCATTTCCTTAACCTCTCTTTACTTTCTCTTTTCACATCCAACTCTTCTTGATTTTCTCTTTGTGCTACTTTTCTCATCAGCAATTTTTGTTTCTATCAACCTATTCTTCTCAAGATCGTTGAATAATAAGCTTTCTTCATCGGATTCTCATCAACAACGTGTTGTATGGTCAATTGGGTCAAAGGATGAGGAGTTAAAGAGCTTAAATTCTGGATCTTGGGTTCAAGTTTACAGCAATGGTGATGTTTATGAAGGTGAGTTTCATAAGGGGAAGTGCTCAGGGAGTGGTGTTTATCATTTTCATATGAGTGGAAGATTTGAAGGTGATTGGATTGATGGAAAGTATGATGGGTTTGGTGTTGAAACGTGGGCTAGAGGAAGTAGGTATCGTGGACAGTATAGGAAGGGTTTGAGGCATGGAATTGGAATTTATAGGTTTTTTGGTGGTGATGTTTATACTGGTGAATGGTGTAATGGTCAGTGTCATGGCTTTGGAGTTCATACTTGCAATGATGGGAGTCATTATGTTGGGGAATTCAAATGGGGTGTTAAACATGGATTAGGACGGTACCATTTCAGAAATGGGGACATATATGCCGGAGAATATTTTGCGGATATGATGCATGGCTTTGGAGTCTATCAATTTCAGAATGGTCACCGATATGAGGGTGCGTGGCATGAAGGAAGAAGACAAGGACTGGGAATGTACACTTTTAGAAACGGGGAAACACAGTGTGGTCACTGGCAGAATGGGATTCTTGATAACCCTAAAAAGCAAGACAGTCATATTGGGTCTCCATGTGCTGTAGACCATGCCAAGGTTTTCAAAGCTGTCCAGGATGCTCATTGTGCGGCGGAGAAAGCCTACGGAATGTCAAAGAAGGATGAACTGGTGAATAAAGTAGCAGCTGCAGCTAATAAAGCAGCAAATGCAGCTAGAGTTGCAGCTGTGAAGGCTGTGCAAAATAGTATGCACCGTGATTACAATGTTCAATGA

Protein sequence

>MsG0880046088.01.T01

MLMRHLNKSDSEIGKENFNLSSDFTHFSIQVTPHHFHHEQRFSSNTPSSPSHTPTHNKTHQNKPSFTIPFTSKFQSFKLLTRFHFIIFISLTSLYFLFSHPTLLDFLFVLLFSSAIFVSINLFFSRSLNNKLSSSDSHQQRVVWSIGSKDEELKSLNSGSWVQVYSNGDVYEGEFHKGKCSGSGVYHFHMSGRFEGDWIDGKYDGFGVETWARGSRYRGQYRKGLRHGIGIYRFFGGDVYTGEWCNGQCHGFGVHTCNDGSHYVGEFKWGVKHGLGRYHFRNGDIYAGEYFADMMHGFGVYQFQNGHRYEGAWHEGRRQGLGMYTFRNGETQCGHWQNGILDNPKKQDSHIGSPCAVDHAKVFKAVQDAHCAAEKAYGMSKKDELVNKVAAAANKAANAARVAAVKAVQNSMHRDYNVQ*