AlfalfaGEDB | MsG0780039529.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039529.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039529.01.T01	XP_003623727.3	90.852	317	6	1	1	317	1	294	0	577

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000251.01	MsG0780039529.01	0.800679	1.287152e-48	6.030075e-46
MsG0180000703.01	MsG0780039529.01	0.800802	1.214806e-48	5.708791e-46
MsG0180001088.01	MsG0780039529.01	0.827603	1.428121e-54	1.385203e-51
MsG0180001662.01	MsG0780039529.01	0.811081	8.365842e-51	5.130057e-48
MsG0180002842.01	MsG0780039529.01	0.800542	1.372361e-48	6.406932e-46
MsG0180003807.01	MsG0780039529.01	0.812346	4.440398e-51	2.816410e-48
MsG0180004465.01	MsG0780039529.01	0.807764	4.309849e-50	2.420931e-47
MsG0180004765.01	MsG0780039529.01	0.805876	1.080141e-49	5.779235e-47
MsG0180005250.01	MsG0780039529.01	0.815324	9.799774e-52	6.735361e-49
MsG0180005730.01	MsG0780039529.01	0.805967	1.033711e-49	5.543831e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039529.01.T01	MTR_7g075050	90.221	317	8	1	1	317	1	294	0.0	573
MsG0780039529.01.T01	MTR_7g075050	89.590	317	8	1	1	317	1	292	0.0	568
MsG0780039529.01.T01	MTR_8g059560	89.274	317	11	1	1	317	1	294	0.0	568
MsG0780039529.01.T01	MTR_8g059560	88.644	317	11	1	1	317	1	292	0.0	561
MsG0780039529.01.T01	MTR_7g075050	85.227	264	16	1	1	264	1	241	6.57e-157	439
MsG0780039529.01.T01	MTR_8g059560	84.848	264	17	1	1	264	1	241	1.43e-156	437
MsG0780039529.01.T01	MTR_8g059560	86.822	258	11	1	1	258	1	235	1.44e-156	438
MsG0780039529.01.T01	MTR_7g075050	87.500	256	9	1	1	256	1	233	2.43e-156	437
MsG0780039529.01.T01	MTR_8g059560	84.091	264	17	1	1	264	1	239	1.16e-154	433
MsG0780039529.01.T01	MTR_8g059560	86.047	258	11	1	1	258	1	233	1.54e-154	433

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039529.01.T01	AT3G20070	38.750	320	151	5	1	315	1	280	1.24e-60	195
MsG0780039529.01.T01	AT3G20070	38.750	320	151	5	1	315	1	280	1.24e-60	195
MsG0780039529.01.T01	AT3G20070	38.750	320	151	5	1	315	1	280	1.24e-60	195
MsG0780039529.01.T01	AT3G20070	34.420	276	136	5	45	315	1	236	7.49e-40	140

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Find 81 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTATGAGGCAGGAAC+AGG	0.482742	7:-65341314	MsG0780039529.01.T01:CDS
AAATTCCTCAAATTTGTCTC+TGG	0.449362	7:-65343200	MsG0780039529.01.T01:intron
AACCTTGAGAGTAGTGTATT+TGG	0.216226	7:+65343338	None:intergenic
AAGAAGTAATAGATCACTTG+AGG	0.598230	7:-65343036	MsG0780039529.01.T01:CDS
AAGAATATGGGGCACATGGT+TGG	0.471766	7:+65337774	None:intergenic
AAGCCATATCCAAAAGGTGG+AGG	0.559932	7:+65337675	None:intergenic
AATACTCCAAATAATTGAAG+TGG	0.521636	7:+65337634	None:intergenic
AATGCACTTATCAATGCTAT+TGG	0.398878	7:-65337311	MsG0780039529.01.T01:three_prime_UTR
ACAAAGCCATATCCAAAAGG+TGG	0.626651	7:+65337672	None:intergenic
ACAACAAAGCCATATCCAAA+AGG	0.558962	7:+65337669	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGACAGGAAAATAAG+AGG	+	Chr7:65342189-65342208	None:intergenic	30.0%
AAATATTGGATGAACAGAAG+AGG	+	Chr7:65342163-65342182	None:intergenic	30.0%
AAATTCCTCAAATTTGTCTC+TGG	-	Chr7:65337360-65337379	MsG0780039529.01.T01:three_prime_UTR	30.0%
AACATTTCATTACAAGTGCT+TGG	-	Chr7:65342600-65342619	MsG0780039529.01.T01:intron	30.0%
AAGAAGTAATAGATCACTTG+AGG	-	Chr7:65337524-65337543	MsG0780039529.01.T01:three_prime_UTR	30.0%
AAGATCTTAGTTTATTGGCA+TGG	-	Chr7:65338272-65338291	MsG0780039529.01.T01:intron	30.0%
AATAGTATACATCATGACAG+TGG	+	Chr7:65341219-65341238	None:intergenic	30.0%
AATGCACTTATCAATGCTAT+TGG	-	Chr7:65343249-65343268	MsG0780039529.01.T01:CDS	30.0%
ACAATAAAATGTAGCAGAGA+AGG	+	Chr7:65342551-65342570	None:intergenic	30.0%
ACATGTGAATTGTTTCAATG+GGG	-	Chr7:65339600-65339619	MsG0780039529.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	65337194	65343388	65337194	ID=MsG0780039529.01;Name=MsG0780039529.01
Chr7	mRNA	65337194	65343388	65337194	ID=MsG0780039529.01.T01;Parent=MsG0780039529.01;Name=MsG0780039529.01.T01;_AED=0.45;_eAED=0.47;_QI=0\|0.85\|0.87\|1\|0.85\|0.87\|8\|543\|317
Chr7	exon	65337194	65337927	65337194	ID=MsG0780039529.01.T01:exon:10339;Parent=MsG0780039529.01.T01
Chr7	exon	65340787	65340918	65340787	ID=MsG0780039529.01.T01:exon:10338;Parent=MsG0780039529.01.T01
Chr7	exon	65341016	65341124	65341016	ID=MsG0780039529.01.T01:exon:10337;Parent=MsG0780039529.01.T01
Chr7	exon	65341210	65341460	65341210	ID=MsG0780039529.01.T01:exon:10336;Parent=MsG0780039529.01.T01
Chr7	exon	65342415	65342476	65342415	ID=MsG0780039529.01.T01:exon:10335;Parent=MsG0780039529.01.T01
Chr7	exon	65342974	65343064	65342974	ID=MsG0780039529.01.T01:exon:10334;Parent=MsG0780039529.01.T01
Chr7	exon	65343201	65343270	65343201	ID=MsG0780039529.01.T01:exon:10333;Parent=MsG0780039529.01.T01
Chr7	exon	65343341	65343388	65343341	ID=MsG0780039529.01.T01:exon:10332;Parent=MsG0780039529.01.T01
Chr7	CDS	65343341	65343388	65343341	ID=MsG0780039529.01.T01:cds;Parent=MsG0780039529.01.T01
Chr7	CDS	65343201	65343270	65343201	ID=MsG0780039529.01.T01:cds;Parent=MsG0780039529.01.T01
Chr7	CDS	65342974	65343064	65342974	ID=MsG0780039529.01.T01:cds;Parent=MsG0780039529.01.T01
Chr7	CDS	65342415	65342476	65342415	ID=MsG0780039529.01.T01:cds;Parent=MsG0780039529.01.T01
Chr7	CDS	65341210	65341460	65341210	ID=MsG0780039529.01.T01:cds;Parent=MsG0780039529.01.T01
Chr7	CDS	65341016	65341124	65341016	ID=MsG0780039529.01.T01:cds;Parent=MsG0780039529.01.T01
Chr7	CDS	65340787	65340918	65340787	ID=MsG0780039529.01.T01:cds;Parent=MsG0780039529.01.T01
Chr7	CDS	65337737	65337927	65337737	ID=MsG0780039529.01.T01:cds;Parent=MsG0780039529.01.T01
Chr7	three_prime_UTR	65337194	65337736	65337194	ID=MsG0780039529.01.T01:three_prime_utr;Parent=MsG0780039529.01.T01

Gene Sequence

>MsG0780039529.01.T01

ATGGAAGCTCTCTACAAAAAACTCTACTCCAAATACACTACTCTCAAGACTAACAAACTCTCCGAATTGGAAGATGTTAACAAGGAACAAGAACTCAAATTCCTCAAATTTGTCTCTGCTGCGGAAGAAGTAATAGATCACTTGAGGACTGAAAATGATAAGCTTCTTGGACAAATTAATGATTTGGGTAATGAATTAACTTCAGTTAGGGTTGCCAAAGACAATGAACTGGTTGAACATCAAAGGCTTTTATTGGAGGAAAAGAAGAAGAATGAAGCTCTTTTTGAAGAAGTTGAGAAGTTGCAAAAGCTTCTGAAGGAAGGAACTTCCGGTGATTTAAGTAACAGAAATGTTGTGAACAATACCTCCAATAACTCATCTATAAGAATGACAAGAAAACGTATGAGGCAGGAACAGGATGCATTGGACATAGAAGCAAGGTTTATACCATCTGAAAATGAAGGTAATTCTGTGGATAGAGAGTCAACACGAAGCTTTCTCAAGGAGAATGCTTCCAATAAGCACGTTTCATTTTATTATTTTGATGGATACATTAAAAACCTTAATATGATCACTTTTTGTTGTGAAAAGCGGCAGGAGTGCTCTACTTCTAAGGCTAATGATCAATCAGCCGTTGATACACAAGAAAGTGATCATAAAAACTGGCTTGTTCATACTCTTTTTGAGTATACATTGGATATGAAATTATCCACTGACTGTCAAACTGGACGATTATGTCTCTCTGCAATGCATCAATCAAGTGGTTACTCCTTCAGTATATCATGGATTAGCAGAGCCCCTGGAGAGGAAGCAGAACTGCTATACCATGTTCTATCTCTAGGCACACTTGAAAGATTAGCACCAGAATGGATGAGGGAAGACATCATGTTCAGTCCAACCATGTGCCCCATATTCTTTGAAAGGGTGACGCGTGTTATCAATTTGAAACACTGA

Protein sequence

>MsG0780039529.01.T01

MEALYKKLYSKYTTLKTNKLSELEDVNKEQELKFLKFVSAAEEVIDHLRTENDKLLGQINDLGNELTSVRVAKDNELVEHQRLLLEEKKKNEALFEEVEKLQKLLKEGTSGDLSNRNVVNNTSNNSSIRMTRKRMRQEQDALDIEARFIPSENEGNSVDRESTRSFLKENASNKHVSFYYFDGYIKNLNMITFCCEKRQECSTSKANDQSAVDTQESDHKNWLVHTLFEYTLDMKLSTDCQTGRLCLSAMHQSSGYSFSISWISRAPGEEAELLYHVLSLGTLERLAPEWMREDIMFSPTMCPIFFERVTRVINLKH*