AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041633.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041633.01.T01 MTR_7g114810 85.762 302 22 2 1 281 1 302 0.0 508
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041633.01.T01 AT3G04830 66.667 303 78 3 1 280 1 303 4.74e-139 394
MsG0780041633.01.T01 AT5G28220 65.781 301 79 3 1 277 14 314 1.03e-138 394
MsG0780041633.01.T01 AT3G04830 66.667 303 74 4 1 280 1 299 2.19e-137 390

Find 75 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTGTTGTTATTGTTAAT+TGG 0.183627 7:+93280836 None:intergenic
AAGGCACAAGGCAATATTTC+TGG 0.195163 7:-93278632 MsG0780041633.01.T01:CDS
GATACCATCGGCGCCGAGTT+TGG 0.277168 7:+93280578 None:intergenic
CATAGTATTTCTTGGCAGTT+TGG 0.300310 7:+93278006 None:intergenic
ATTGAAGAATCTAGAAATTC+AGG 0.329036 7:-93280721 MsG0780041633.01.T01:CDS
GCATCCACTATTGACTTAAC+TGG 0.339789 7:-93277984 MsG0780041633.01.T01:CDS
AGTGGATGCATAGTATTTCT+TGG 0.360041 7:+93277998 None:intergenic
GGCTCTTCGGAAGAGGTTCC+CGG 0.373643 7:-93279824 MsG0780041633.01.T01:CDS
ATAATCGATTTGTTGTCGTT+TGG 0.375630 7:-93280789 MsG0780041633.01.T01:five_prime_UTR
GTAAGTTGAGGAAGCTTGTC+AGG 0.381715 7:+93277659 None:intergenic
TTGTACAGATCATCCATAAA+AGG 0.385579 7:-93278670 MsG0780041633.01.T01:intron
GCTATTGCACAACTTACAAA+AGG 0.390284 7:-93277764 MsG0780041633.01.T01:CDS
GCCGAGTTTGGATCGGAGTT+TGG 0.396111 7:+93280590 None:intergenic
CGACAATGTTAAACTCTTCA+AGG 0.399413 7:+93277631 None:intergenic
GTAATCCTTCTCCAACGCTT+TGG 0.411068 7:+93277694 None:intergenic
CTAGAAATTCAGGTCGATAA+TGG 0.415655 7:-93280711 MsG0780041633.01.T01:CDS
GTCGTTTGGATCTGTGAATT+CGG 0.428352 7:-93280775 MsG0780041633.01.T01:five_prime_UTR
TAATGGTGGCGGAGGAGCTT+GGG 0.434613 7:-93280694 MsG0780041633.01.T01:CDS
ATATTTCTGGGGCTATTGAA+TGG 0.440932 7:-93278619 MsG0780041633.01.T01:CDS
TAGGGAATCTTATGCATAGC+TGG 0.442919 7:-93280266 MsG0780041633.01.T01:CDS
AGGCACAAGGCAATATTTCT+GGG 0.444178 7:-93278631 MsG0780041633.01.T01:CDS
AGTGATAGTGTGTGCGGTGC+TGG 0.445537 7:-93280876 MsG0780041633.01.T01:five_prime_UTR
TGCCAGGTACTTTATACGCT+TGG 0.459506 7:-93278044 MsG0780041633.01.T01:intron
AGAATGGACTTTGTATGAGC+AGG 0.460189 7:-93280443 MsG0780041633.01.T01:CDS
ATACACTGACAACATGCATT+AGG 0.460351 7:+93277372 None:intergenic
TCAATGTCTTGATGTTGCTC+AGG 0.464948 7:-93280398 MsG0780041633.01.T01:intron
CCATAAAAGGAGGGTGGCTA+TGG 0.465139 7:-93278657 MsG0780041633.01.T01:CDS
CAGGTACTTTATACGCTTGG+TGG 0.479808 7:-93278041 MsG0780041633.01.T01:CDS
ATCTGTGAATTCGGCAAAGA+TGG 0.481060 7:-93280766 MsG0780041633.01.T01:exon
AGGACTGCACAAAGGCTCTT+CGG 0.483997 7:-93279837 MsG0780041633.01.T01:CDS
TCGATTATCGCAGGCCGCAC+GGG 0.490096 7:+93280804 None:intergenic
TACTAGTAGTAGTAGCGTAT+AGG 0.498251 7:-93280903 MsG0780041633.01.T01:five_prime_UTR
GCCTCCAGTTAAGTCAATAG+TGG 0.499666 7:+93277980 None:intergenic
GCAGGTTGCAGTTGCTGCTA+TGG 0.502649 7:-93280425 MsG0780041633.01.T01:CDS
ATCGATTATCGCAGGCCGCA+CGG 0.513696 7:+93280803 None:intergenic
ATAATGGTGGCGGAGGAGCT+TGG 0.516076 7:-93280695 MsG0780041633.01.T01:CDS
GCATATGCTAAGTGATAAAG+TGG 0.521109 7:+93278243 None:intergenic
GCACAAAGGCTCTTCGGAAG+AGG 0.521348 7:-93279831 MsG0780041633.01.T01:CDS
AGCTCTCTTCGGTATATGCT+TGG 0.521948 7:-93277946 MsG0780041633.01.T01:intron
GAGTTTGGAATCATTCAAGA+TGG 0.538373 7:+93280605 None:intergenic
AAGAATACCAGAGCTCTCTT+CGG 0.539836 7:-93277957 MsG0780041633.01.T01:CDS
CGATCCAAACTCGGCGCCGA+TGG 0.544519 7:-93280582 MsG0780041633.01.T01:intron
TTCAAGGCAGTTGTAAGTTG+AGG 0.545844 7:+93277647 None:intergenic
ATCTCTAGCAGCCAAAGCGT+TGG 0.547628 7:-93277705 MsG0780041633.01.T01:CDS
GCATATACCGAAGAGAGCTC+TGG 0.553907 7:+93277950 None:intergenic
AAGAACAAGGAAGATAAAGA+AGG 0.555037 7:-93277740 MsG0780041633.01.T01:CDS
TCCAAACTCCGATCCAAACT+CGG 0.556249 7:-93280591 MsG0780041633.01.T01:CDS
AGACAAATATTTATTACCGA+AGG 0.556697 7:+93277450 None:intergenic
TCATGGCAGATCACGATGCA+TGG 0.557684 7:-93278457 MsG0780041633.01.T01:CDS
TTCCCTCGTCAGAAAACTCA+AGG 0.558152 7:-93280664 MsG0780041633.01.T01:CDS
CAGGTCGATAATGGTGGCGG+AGG 0.567323 7:-93280702 MsG0780041633.01.T01:CDS
TATTGAAGAGAGAATAAATG+AGG 0.572066 7:+93277509 None:intergenic
CTATTGCACAACTTACAAAA+GGG 0.580815 7:-93277763 MsG0780041633.01.T01:CDS
AGCAGCCAAAGCGTTGGAGA+AGG 0.584396 7:-93277699 MsG0780041633.01.T01:CDS
TCTGATAAAGTCCTCAAGCA+TGG 0.590101 7:-93280633 MsG0780041633.01.T01:CDS
TACAGATCATCCATAAAAGG+AGG 0.591043 7:-93278667 MsG0780041633.01.T01:intron
AAGGAGGGTGGCTATGGCAA+AGG 0.598462 7:-93278651 MsG0780041633.01.T01:CDS
GACAACAAATCGATTATCGC+AGG 0.598932 7:+93280795 None:intergenic
CATCGGCGCCGAGTTTGGAT+CGG 0.608680 7:+93280583 None:intergenic
ATTCAGGTCGATAATGGTGG+CGG 0.610159 7:-93280705 MsG0780041633.01.T01:CDS
ATTGTTAATTGGAAATACCA+CGG 0.615188 7:+93280847 None:intergenic
GTGGCTATGGCAAAGGCACA+AGG 0.630715 7:-93278644 MsG0780041633.01.T01:CDS
AGATGGACAATCCATGCTTG+AGG 0.636709 7:+93280622 None:intergenic
TTCCCGGAGAGCAAAAGAGT+TGG 0.639248 7:-93279808 MsG0780041633.01.T01:intron
TCCACTATTGACTTAACTGG+AGG 0.645324 7:-93277981 MsG0780041633.01.T01:CDS
AAGTGATAAAGTGGTACAGT+TGG 0.646636 7:+93278252 None:intergenic
GAAATTCAGGTCGATAATGG+TGG 0.656182 7:-93280708 MsG0780041633.01.T01:CDS
ACAGATCATCCATAAAAGGA+GGG 0.667416 7:-93278666 MsG0780041633.01.T01:intron
ACTTACAAAAGGGAAGAACA+AGG 0.669740 7:-93277753 MsG0780041633.01.T01:CDS
GATCATCCATAAAAGGAGGG+TGG 0.671561 7:-93278663 MsG0780041633.01.T01:CDS
TGAGGACTTTATCAGAACGA+CGG 0.672947 7:+93280640 None:intergenic
GGCACAAGGCAATATTTCTG+GGG 0.681635 7:-93278630 MsG0780041633.01.T01:CDS
AAAGATGGTAACGAAAACAG+AGG 0.734123 7:-93280751 MsG0780041633.01.T01:exon
GGAGTGAGTGATAGTGTGTG+CGG 0.740781 7:-93280882 MsG0780041633.01.T01:five_prime_UTR
AAATCGATCTAAAACCCGTG+CGG 0.778635 7:-93280818 MsG0780041633.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGTTCATATATATT+TGG + Chr7:93279803-93279822 None:intergenic 10.0%
!! AAAAAAATTAAAATTACAAG+CGG - Chr7:93278635-93278654 MsG0780041633.01.T01:CDS 10.0%
!!! AAACATTATTTTAACTTAAA+TGG - Chr7:93280228-93280247 MsG0780041633.01.T01:intron 10.0%
!!! TAATATTTTACTTTTTTATC+AGG - Chr7:93278441-93278460 MsG0780041633.01.T01:CDS 10.0%
!! ATATGTAAAACAAACTTATT+TGG + Chr7:93279024-93279043 None:intergenic 15.0%
!! ATCAATTAAAGATACTTATT+TGG + Chr7:93279075-93279094 None:intergenic 15.0%
!! CAAATAAAAAAAAAACACAA+AGG + Chr7:93279968-93279987 None:intergenic 15.0%
!!! AAGTATCTTTAATTGATTTT+TGG - Chr7:93279078-93279097 MsG0780041633.01.T01:intron 15.0%
!!! AATAACCAAATTTTCTTTTT+TGG - Chr7:93279597-93279616 MsG0780041633.01.T01:intron 15.0%
!!! TTATAACAATGACTAATTTT+TGG - Chr7:93279303-93279322 MsG0780041633.01.T01:intron 15.0%
!!! TTGTTATTTAACAAACTTTT+TGG - Chr7:93280717-93280736 MsG0780041633.01.T01:CDS 15.0%
!! AATAAAAATCATACATTTGC+AGG + Chr7:93279893-93279912 None:intergenic 20.0%
!! ATAAAAATCATACATTTGCA+GGG + Chr7:93279892-93279911 None:intergenic 20.0%
!! TACCATATTAAATATGCAAT+CGG + Chr7:93279469-93279488 None:intergenic 20.0%
!! TATATGTGAACAATATATGA+AGG + Chr7:93280472-93280491 None:intergenic 20.0%
!! TTCACAATTAAACGAAATTT+AGG + Chr7:93277754-93277773 None:intergenic 20.0%
!!! AAGCAATATTTTCCTTTAAA+CGG + Chr7:93279765-93279784 None:intergenic 20.0%
!!! AGTTTCTTTTAGCAAATTTT+TGG - Chr7:93278912-93278931 MsG0780041633.01.T01:intron 20.0%
!!! GATTTGTTGTTATTGTTAAT+TGG + Chr7:93277465-93277484 None:intergenic 20.0%
!!! TTATTTGGAAATTTTCTAGT+GGG + Chr7:93279060-93279079 None:intergenic 20.0%
!!! TTGTAATTCTATGCTATTTA+GGG - Chr7:93278014-93278033 MsG0780041633.01.T01:CDS 20.0%
!!! TTTTGGTAACTAATTATTAC+AGG - Chr7:93279095-93279114 MsG0780041633.01.T01:intron 20.0%
! AAATTGCAATGATTAACCTT+TGG - Chr7:93278744-93278763 MsG0780041633.01.T01:intron 25.0%
! AGACAAATATTTATTACCGA+AGG + Chr7:93280851-93280870 None:intergenic 25.0%
! ATTGAAGAATCTAGAAATTC+AGG - Chr7:93277577-93277596 MsG0780041633.01.T01:three_prime_UTR 25.0%
! ATTGTTAATTGGAAATACCA+CGG + Chr7:93277454-93277473 None:intergenic 25.0%
! CAAAGCCAAAAAAGAAAATT+TGG + Chr7:93279605-93279624 None:intergenic 25.0%
! CATAAGACTTATCATATAAG+TGG - Chr7:93278119-93278138 MsG0780041633.01.T01:intron 25.0%
! GAAAAACATTAAACCACAAT+TGG + Chr7:93277801-93277820 None:intergenic 25.0%
! TAAACCTTTATACCTTTATG+TGG - Chr7:93278315-93278334 MsG0780041633.01.T01:intron 25.0%
! TAATTTCTGAATTTGGATAG+TGG - Chr7:93278277-93278296 MsG0780041633.01.T01:CDS 25.0%
! TAGGTTTAAATTGATACCAT+CGG + Chr7:93277735-93277754 None:intergenic 25.0%
! TATTGAAGAGAGAATAAATG+AGG + Chr7:93280792-93280811 None:intergenic 25.0%
! TTGAGTAATGAAACCAAAAA+GGG - Chr7:93279392-93279411 MsG0780041633.01.T01:intron 25.0%
! TTGAGTCAATATAAGCTTAA+CGG - Chr7:93278609-93278628 MsG0780041633.01.T01:CDS 25.0%
!! AAAACTAGAGACTTTTAATC+AGG + Chr7:93278399-93278418 None:intergenic 25.0%
!! ATGTTTTATAACTCTTTGCT+AGG + Chr7:93280214-93280233 None:intergenic 25.0%
!! CTTATTTGGAAATTTTCTAG+TGG + Chr7:93279061-93279080 None:intergenic 25.0%
!! CTTGTAATTCTATGCTATTT+AGG - Chr7:93278013-93278032 MsG0780041633.01.T01:CDS 25.0%
!! GTTCTGTATTTTATTACCTT+CGG - Chr7:93280832-93280851 MsG0780041633.01.T01:five_prime_UTR 25.0%
!! TACCGATTGCATATTTAATA+TGG - Chr7:93279464-93279483 MsG0780041633.01.T01:intron 25.0%
!! TCATTTGTAACTCAATTTTG+TGG - Chr7:93277964-93277983 MsG0780041633.01.T01:CDS 25.0%
!! TGTAGAAGTTTGAAATGTAA+AGG + Chr7:93278792-93278811 None:intergenic 25.0%
!!! CTTTTAGCAAATTTTTGGAT+TGG - Chr7:93278917-93278936 MsG0780041633.01.T01:intron 25.0%
!!! GTCTCTAGTTTTAGAATTTA+TGG - Chr7:93278407-93278426 MsG0780041633.01.T01:intron 25.0%
!!! GTTTTTTTGTTGATTCAGAA+TGG - Chr7:93277839-93277858 MsG0780041633.01.T01:intron 25.0%
!!! TAATACTATACTTTTTGCGA+TGG + Chr7:93277370-93277389 None:intergenic 25.0%
!!! TTTTTATTTGTCTTCCTGTT+AGG - Chr7:93279978-93279997 MsG0780041633.01.T01:intron 25.0%
AACTCACTTAACCTTACTAT+CGG - Chr7:93279215-93279234 MsG0780041633.01.T01:intron 30.0%
AAGAACAAGGAAGATAAAGA+AGG - Chr7:93280558-93280577 MsG0780041633.01.T01:intron 30.0%
AAGTATCTACTCTATGAGTT+AGG - Chr7:93280084-93280103 MsG0780041633.01.T01:intron 30.0%
AGGCAACATAAAAAACATGA+TGG + Chr7:93278342-93278361 None:intergenic 30.0%
ATGATTTCCATTCTTTCAAG+AGG - Chr7:93278956-93278975 MsG0780041633.01.T01:intron 30.0%
ATTTGAATATAGTCCTGCTT+TGG - Chr7:93280427-93280446 MsG0780041633.01.T01:CDS 30.0%
CATTACACTTTGAGTATACT+TGG + Chr7:93278831-93278850 None:intergenic 30.0%
CTATTGCACAACTTACAAAA+GGG - Chr7:93280535-93280554 MsG0780041633.01.T01:intron 30.0%
GCAACAGAAATAAATCACTA+CGG + Chr7:93279931-93279950 None:intergenic 30.0%
GCTCTTGTAATTTCTGAATT+TGG - Chr7:93278270-93278289 MsG0780041633.01.T01:CDS 30.0%
GGTAACTAATTATTACAGGA+AGG - Chr7:93279099-93279118 MsG0780041633.01.T01:intron 30.0%
GTTGAGTAATGAAACCAAAA+AGG - Chr7:93279391-93279410 MsG0780041633.01.T01:intron 30.0%
TAAGATTTATGCTTCATCAC+CGG + Chr7:93279286-93279305 None:intergenic 30.0%
TAAGTTAATGAATAGCGCTA+CGG + Chr7:93278068-93278087 None:intergenic 30.0%
TGAAATTGAAGACCGTTTAA+AGG - Chr7:93279750-93279769 MsG0780041633.01.T01:intron 30.0%
TGATTTCCATTCTTTCAAGA+GGG - Chr7:93278957-93278976 MsG0780041633.01.T01:intron 30.0%
TTGCTAAAAGAAACTAGAAC+TGG + Chr7:93278907-93278926 None:intergenic 30.0%
TTGTACAGATCATCCATAAA+AGG - Chr7:93279628-93279647 MsG0780041633.01.T01:intron 30.0%
! AGCAAATGTAACTGTTGTTT+AGG - Chr7:93278707-93278726 MsG0780041633.01.T01:intron 30.0%
! CACTTGACTCTTTTATGATA+TGG - Chr7:93278191-93278210 MsG0780041633.01.T01:intron 30.0%
! TTTTTATGTTGCCTGAATTG+AGG - Chr7:93278348-93278367 MsG0780041633.01.T01:intron 30.0%
!! ATAATCGATTTGTTGTCGTT+TGG - Chr7:93277509-93277528 MsG0780041633.01.T01:three_prime_UTR 30.0%
!! TCTTACTTTGCATTTTCAAG+AGG - Chr7:93279490-93279509 MsG0780041633.01.T01:intron 30.0%
!! TTAGCAAATTTTTGGATTGG+TGG - Chr7:93278920-93278939 MsG0780041633.01.T01:intron 30.0%
!!! TAGCAAATTTTTGGATTGGT+GGG - Chr7:93278921-93278940 MsG0780041633.01.T01:intron 30.0%
AAACGGTCTTCAATTTCAGA+TGG + Chr7:93279748-93279767 None:intergenic 35.0%
AACGGTCTTCAATTTCAGAT+GGG + Chr7:93279747-93279766 None:intergenic 35.0%
AAGATTTATGCTTCATCACC+GGG + Chr7:93279285-93279304 None:intergenic 35.0%
AAGTCAACTACTTCCAATTG+TGG - Chr7:93277785-93277804 MsG0780041633.01.T01:intron 35.0%
AAGTGATAAAGTGGTACAGT+TGG + Chr7:93280049-93280068 None:intergenic 35.0%
AATCACTACGGAAAGAGAAA+CGG + Chr7:93279919-93279938 None:intergenic 35.0%
ACAGATCATCCATAAAAGGA+GGG - Chr7:93279632-93279651 MsG0780041633.01.T01:intron 35.0%
ACTAATTATTACAGGAAGGC+TGG - Chr7:93279103-93279122 MsG0780041633.01.T01:intron 35.0%
ACTCACTTAACCTTACTATC+GGG - Chr7:93279216-93279235 MsG0780041633.01.T01:intron 35.0%
ACTTACAAAAGGGAAGAACA+AGG - Chr7:93280545-93280564 MsG0780041633.01.T01:intron 35.0%
AGAACTGGACATCAATAATC+AGG + Chr7:93278892-93278911 None:intergenic 35.0%
AGTGAGTTTACTTGATCAAG+AGG + Chr7:93279203-93279222 None:intergenic 35.0%
AGTGGATGCATAGTATTTCT+TGG + Chr7:93280303-93280322 None:intergenic 35.0%
ATACACTGACAACATGCATT+AGG + Chr7:93280929-93280948 None:intergenic 35.0%
ATGTAGCAAATCCTCAATTC+AGG + Chr7:93278362-93278381 None:intergenic 35.0%
ATTGTTACTCAAGAAAGCCT+AGG + Chr7:93279580-93279599 None:intergenic 35.0%
CAGAATCGTGAACTTGTAAA+TGG + Chr7:93280405-93280424 None:intergenic 35.0%
CATAGTATTTCTTGGCAGTT+TGG + Chr7:93280295-93280314 None:intergenic 35.0%
CGACAATGTTAAACTCTTCA+AGG + Chr7:93280670-93280689 None:intergenic 35.0%
CTAGAAATTCAGGTCGATAA+TGG - Chr7:93277587-93277606 MsG0780041633.01.T01:three_prime_UTR 35.0%
CTTTAACCTTCTAATAGTCC+AGG - Chr7:93279365-93279384 MsG0780041633.01.T01:intron 35.0%
GAACTGGACATCAATAATCA+GGG + Chr7:93278891-93278910 None:intergenic 35.0%
GCATATGCTAAGTGATAAAG+TGG + Chr7:93280058-93280077 None:intergenic 35.0%
GCTATTGCACAACTTACAAA+AGG - Chr7:93280534-93280553 MsG0780041633.01.T01:intron 35.0%
GTAGCGCTATTCATTAACTT+AGG - Chr7:93278067-93278086 MsG0780041633.01.T01:intron 35.0%
GTTATTAGAGTGAAGAAACC+CGG + Chr7:93280149-93280168 None:intergenic 35.0%
TACAGATCATCCATAAAAGG+AGG - Chr7:93279631-93279650 MsG0780041633.01.T01:intron 35.0%
TACTAGTAGTAGTAGCGTAT+AGG - Chr7:93277395-93277414 MsG0780041633.01.T01:three_prime_UTR 35.0%
TAGTGAGGCTCTATAGTATT+AGG + Chr7:93279421-93279440 None:intergenic 35.0%
TCATTAACTTAGGCTCTGTT+TGG - Chr7:93278077-93278096 MsG0780041633.01.T01:intron 35.0%
TGATATCTACTAACCAAAGC+AGG + Chr7:93280443-93280462 None:intergenic 35.0%
TTATTAGAGTGAAGAAACCC+GGG + Chr7:93280148-93280167 None:intergenic 35.0%
! AAAGATGGTAACGAAAACAG+AGG - Chr7:93277547-93277566 MsG0780041633.01.T01:three_prime_UTR 35.0%
! AAGACATGTGAAGCTTTTGT+TGG - Chr7:93280872-93280891 MsG0780041633.01.T01:five_prime_UTR 35.0%
! AGACTTTTAATCAGGCATGA+AGG + Chr7:93278391-93278410 None:intergenic 35.0%
! GAGTTTGGAATCATTCAAGA+TGG + Chr7:93277696-93277715 None:intergenic 35.0%
! TCCTCATTTTCACAGATTCA+TGG - Chr7:93279824-93279843 MsG0780041633.01.T01:CDS 35.0%
! TGGACCACATAAAGGTATAA+AGG + Chr7:93278322-93278341 None:intergenic 35.0%
! TTTTTATCAGGACTGCACAA+AGG - Chr7:93278453-93278472 MsG0780041633.01.T01:CDS 35.0%
!! AAACATGATGGACCACATAA+AGG + Chr7:93278330-93278349 None:intergenic 35.0%
!! AACCTTTGGCATCTTTGTTT+TGG - Chr7:93278758-93278777 MsG0780041633.01.T01:intron 35.0%
!! ATATTTCTGGGGCTATTGAA+TGG - Chr7:93279679-93279698 MsG0780041633.01.T01:intron 35.0%
!! TACTTTGCATTTTCAAGAGG+CGG - Chr7:93279493-93279512 MsG0780041633.01.T01:intron 35.0%
!! TAGTATTAGGTTGCCCTTTT+TGG + Chr7:93279408-93279427 None:intergenic 35.0%
!! TGGTGAGTGTTTATTTTCTG+TGG - Chr7:93280372-93280391 MsG0780041633.01.T01:intron 35.0%
!! TTAACTTAAATGGTGTTGCC+AGG - Chr7:93280238-93280257 MsG0780041633.01.T01:intron 35.0%
!!! ACCTTTGGCATCTTTGTTTT+GGG - Chr7:93278759-93278778 MsG0780041633.01.T01:intron 35.0%
AACCAGTACCATCTAACACA+TGG + Chr7:93278231-93278250 None:intergenic 40.0%
AAGAATACCAGAGCTCTCTT+CGG - Chr7:93280341-93280360 MsG0780041633.01.T01:intron 40.0%
AAGGCACAAGGCAATATTTC+TGG - Chr7:93279666-93279685 MsG0780041633.01.T01:intron 40.0%
AATTATTACAGGAAGGCTGG+AGG - Chr7:93279106-93279125 MsG0780041633.01.T01:intron 40.0%
ACCCAAAACAAAGATGCCAA+AGG + Chr7:93278763-93278782 None:intergenic 40.0%
ACCTTACTATCGGGGAAAAA+AGG - Chr7:93279225-93279244 MsG0780041633.01.T01:intron 40.0%
ACTATAGAGCCTCACTATAG+TGG - Chr7:93279424-93279443 MsG0780041633.01.T01:intron 40.0%
AGACAGCTGTTACATTTGCA+GGG + Chr7:93278683-93278702 None:intergenic 40.0%
AGCAACTTAAATCCACAGCA+CGG + Chr7:93278547-93278566 None:intergenic 40.0%
AGGCACAAGGCAATATTTCT+GGG - Chr7:93279667-93279686 MsG0780041633.01.T01:intron 40.0%
AGGTAAACCCATACATCTCT+AGG + Chr7:93280194-93280213 None:intergenic 40.0%
ATCCATGTGTTAGATGGTAC+TGG - Chr7:93278226-93278245 MsG0780041633.01.T01:intron 40.0%
ATCTGTGAATTCGGCAAAGA+TGG - Chr7:93277532-93277551 MsG0780041633.01.T01:three_prime_UTR 40.0%
ATTGCGTCCTAGAGATGTAT+GGG - Chr7:93280184-93280203 MsG0780041633.01.T01:intron 40.0%
CCTTACTATCGGGGAAAAAA+GGG - Chr7:93279226-93279245 MsG0780041633.01.T01:intron 40.0%
CTATAGAGCCTCACTATAGT+GGG - Chr7:93279425-93279444 MsG0780041633.01.T01:intron 40.0%
CTCACTTAACCTTACTATCG+GGG - Chr7:93279217-93279236 MsG0780041633.01.T01:intron 40.0%
CTTACTATCGGGGAAAAAAG+GGG - Chr7:93279227-93279246 MsG0780041633.01.T01:intron 40.0%
GACAACAAATCGATTATCGC+AGG + Chr7:93277506-93277525 None:intergenic 40.0%
GCCATGAATCTGTGAAAATG+AGG + Chr7:93279828-93279847 None:intergenic 40.0%
GCTGCTTGTTTATACCTAAC+AGG + Chr7:93279995-93280014 None:intergenic 40.0%
GGACATCAATAATCAGGGAA+CGG + Chr7:93278886-93278905 None:intergenic 40.0%
GTCGTTTGGATCTGTGAATT+CGG - Chr7:93277523-93277542 MsG0780041633.01.T01:three_prime_UTR 40.0%
GTTAGTTGATCAGTTACTCC+CGG - Chr7:93279264-93279283 MsG0780041633.01.T01:intron 40.0%
TAGACAGCTGTTACATTTGC+AGG + Chr7:93278684-93278703 None:intergenic 40.0%
TAGCATCCCTCTTGAAAGAA+TGG + Chr7:93278966-93278985 None:intergenic 40.0%
TAGGGAATCTTATGCATAGC+TGG - Chr7:93278032-93278051 MsG0780041633.01.T01:CDS 40.0%
TATTGCGTCCTAGAGATGTA+TGG - Chr7:93280183-93280202 MsG0780041633.01.T01:intron 40.0%
TCAATGTCTTGATGTTGCTC+AGG - Chr7:93277900-93277919 MsG0780041633.01.T01:intron 40.0%
TCTGATAAAGTCCTCAAGCA+TGG - Chr7:93277665-93277684 MsG0780041633.01.T01:CDS 40.0%
TGAGAGATCCATGTGTTAGA+TGG - Chr7:93278220-93278239 MsG0780041633.01.T01:intron 40.0%
TGAGGACTTTATCAGAACGA+CGG + Chr7:93277661-93277680 None:intergenic 40.0%
TGCAAATGTAACAGCTGTCT+AGG - Chr7:93278683-93278702 MsG0780041633.01.T01:intron 40.0%
TTCAAGGCAGTTGTAAGTTG+AGG + Chr7:93280654-93280673 None:intergenic 40.0%
! AAATCGATCTAAAACCCGTG+CGG - Chr7:93277480-93277499 MsG0780041633.01.T01:three_prime_UTR 40.0%
! AGAATGGACTTTGTATGAGC+AGG - Chr7:93277855-93277874 MsG0780041633.01.T01:intron 40.0%
! CCTCACTATAGTGGGATTTA+GGG - Chr7:93279433-93279452 MsG0780041633.01.T01:intron 40.0%
! CTCACTATAGTGGGATTTAG+GGG - Chr7:93279434-93279453 MsG0780041633.01.T01:intron 40.0%
! GAAATTCAGGTCGATAATGG+TGG - Chr7:93277590-93277609 MsG0780041633.01.T01:three_prime_UTR 40.0%
! GCAATGTTGCTTGAAGCAAA+AGG - Chr7:93279128-93279147 MsG0780041633.01.T01:intron 40.0%
! TTACCAACTCTTTTGCTCTC+CGG + Chr7:93278496-93278515 None:intergenic 40.0%
!! AAAAGCGTACTCAAGCCTTT+TGG - Chr7:93279169-93279188 MsG0780041633.01.T01:intron 40.0%
!! AGTAGCAACTGTTAGGTTGA+TGG + Chr7:93278583-93278602 None:intergenic 40.0%
!! CATCTCTAGGACGCAATATT+CGG + Chr7:93280181-93280200 None:intergenic 40.0%
!! GCATCCACTATTGACTTAAC+TGG - Chr7:93280314-93280333 MsG0780041633.01.T01:intron 40.0%
!! TCCACTATTGACTTAACTGG+AGG - Chr7:93280317-93280336 MsG0780041633.01.T01:intron 40.0%
AACCAGCCTGGACTATTAGA+AGG + Chr7:93279374-93279393 None:intergenic 45.0%
AACCTTCTAATAGTCCAGGC+TGG - Chr7:93279369-93279388 MsG0780041633.01.T01:intron 45.0%
ACCTGTTATCTCCTGTCACA+CGG - Chr7:93279534-93279553 MsG0780041633.01.T01:intron 45.0%
AGAGTCAAGTGACAAGAGAC+AGG + Chr7:93278182-93278201 None:intergenic 45.0%
AGATGGACAATCCATGCTTG+AGG + Chr7:93277679-93277698 None:intergenic 45.0%
AGCAAAAGGTTCCTGGGAAA+AGG - Chr7:93279142-93279161 MsG0780041633.01.T01:intron 45.0%
AGCAGACAGTAGCAACTGTT+AGG + Chr7:93278590-93278609 None:intergenic 45.0%
AGCTCTCTTCGGTATATGCT+TGG - Chr7:93280352-93280371 MsG0780041633.01.T01:intron 45.0%
CAAGAGGATTGTCCTCCAAA+AGG + Chr7:93279187-93279206 None:intergenic 45.0%
CAGGTACTTTATACGCTTGG+TGG - Chr7:93280257-93280276 MsG0780041633.01.T01:CDS 45.0%
CCCTAAATCCCACTATAGTG+AGG + Chr7:93279436-93279455 None:intergenic 45.0%
GAGTCAAGTGACAAGAGACA+GGG + Chr7:93278181-93278200 None:intergenic 45.0%
GATCATCCATAAAAGGAGGG+TGG - Chr7:93279635-93279654 MsG0780041633.01.T01:intron 45.0%
GCCTCCAGTTAAGTCAATAG+TGG + Chr7:93280321-93280340 None:intergenic 45.0%
GCTTGAAGCAAAAGGTTCCT+GGG - Chr7:93279136-93279155 MsG0780041633.01.T01:intron 45.0%
GTAATCCTTCTCCAACGCTT+TGG + Chr7:93280607-93280626 None:intergenic 45.0%
GTTTCATTACTCAACCAGCC+TGG + Chr7:93279386-93279405 None:intergenic 45.0%
TCCAAACTCCGATCCAAACT+CGG - Chr7:93277707-93277726 MsG0780041633.01.T01:CDS 45.0%
TGCCAGGTACTTTATACGCT+TGG - Chr7:93280254-93280273 MsG0780041633.01.T01:CDS 45.0%
TGCTTGAAGCAAAAGGTTCC+TGG - Chr7:93279135-93279154 MsG0780041633.01.T01:intron 45.0%
TTCCCTCGTCAGAAAACTCA+AGG - Chr7:93277634-93277653 MsG0780041633.01.T01:CDS 45.0%
! ACAAGCAGCATTTTGCTACG+AGG - Chr7:93280006-93280025 MsG0780041633.01.T01:intron 45.0%
! ACTATAGTGGGATTTAGGGG+AGG - Chr7:93279437-93279456 MsG0780041633.01.T01:intron 45.0%
! ATTCAGGTCGATAATGGTGG+CGG - Chr7:93277593-93277612 MsG0780041633.01.T01:three_prime_UTR 45.0%
! CACCAAGCGTATAAAGTACC+TGG + Chr7:93280259-93280278 None:intergenic 45.0%
! CTATAGTGGGATTTAGGGGA+GGG - Chr7:93279438-93279457 MsG0780041633.01.T01:intron 45.0%
! GACCTTGAGTTTTCTGACGA+GGG + Chr7:93277639-93277658 None:intergenic 45.0%
! GCCTCACTATAGTGGGATTT+AGG - Chr7:93279432-93279451 MsG0780041633.01.T01:intron 45.0%
! GGCACAAGGCAATATTTCTG+GGG - Chr7:93279668-93279687 MsG0780041633.01.T01:intron 45.0%
! GTAAGTTGAGGAAGCTTGTC+AGG + Chr7:93280642-93280661 None:intergenic 45.0%
! GTGTGCAGTTGCTTGTGTTT+TGG + Chr7:93278864-93278883 None:intergenic 45.0%
! TACCAACTCTTTTGCTCTCC+GGG + Chr7:93278495-93278514 None:intergenic 45.0%
!!! CCCTTTTTTCCCCGATAGTA+AGG + Chr7:93279229-93279248 None:intergenic 45.0%
ACTATCGGGGAAAAAAGGGG+AGG - Chr7:93279230-93279249 MsG0780041633.01.T01:intron 50.0%
AGGACTGCACAAAGGCTCTT+CGG - Chr7:93278461-93278480 MsG0780041633.01.T01:CDS 50.0%
ATCTCTAGCAGCCAAAGCGT+TGG - Chr7:93280593-93280612 MsG0780041633.01.T01:CDS 50.0%
CCATAAAAGGAGGGTGGCTA+TGG - Chr7:93279641-93279660 MsG0780041633.01.T01:intron 50.0%
CTATCGGGGAAAAAAGGGGA+GGG - Chr7:93279231-93279250 MsG0780041633.01.T01:intron 50.0%
GAGACAGGGAAGAGTCTGTT+TGG + Chr7:93278167-93278186 None:intergenic 50.0%
GCATATACCGAAGAGAGCTC+TGG + Chr7:93280351-93280370 None:intergenic 50.0%
TATCGGGGAAAAAAGGGGAG+GGG - Chr7:93279232-93279251 MsG0780041633.01.T01:intron 50.0%
TCAAATTCTTCCCCGTCTCC+CGG - Chr7:93280127-93280146 MsG0780041633.01.T01:intron 50.0%
TCATGGCAGATCACGATGCA+TGG - Chr7:93279841-93279860 MsG0780041633.01.T01:intron 50.0%
TCCGTGTGACAGGAGATAAC+AGG + Chr7:93279538-93279557 None:intergenic 50.0%
TCTACGTCTTTACCGTGCTG+TGG - Chr7:93278532-93278551 MsG0780041633.01.T01:intron 50.0%
TTCCCGGAGAGCAAAAGAGT+TGG - Chr7:93278490-93278509 MsG0780041633.01.T01:intron 50.0%
! AGCGTACTCAAGCCTTTTGG+AGG - Chr7:93279172-93279191 MsG0780041633.01.T01:intron 50.0%
! CCATAGCCACCCTCCTTTTA+TGG + Chr7:93279644-93279663 None:intergenic 50.0%
! GCAGGGCTCTATCTAAGATC+AGG + Chr7:93278666-93278685 None:intergenic 50.0%
! GGACCTTGAGTTTTCTGACG+AGG + Chr7:93277640-93277659 None:intergenic 50.0%
! GGAGTGAGTGATAGTGTGTG+CGG - Chr7:93277416-93277435 MsG0780041633.01.T01:three_prime_UTR 50.0%
! GTGCAATAGCAGAAGTGCAC+TGG + Chr7:93280524-93280543 None:intergenic 50.0%
!!! CGCTTTTTCTGCCTTTTCCC+AGG + Chr7:93279156-93279175 None:intergenic 50.0%
AAGGAGGGTGGCTATGGCAA+AGG - Chr7:93279647-93279666 MsG0780041633.01.T01:intron 55.0%
AGTGAAGAAACCCGGGAGAC+GGG + Chr7:93280141-93280160 None:intergenic 55.0%
ATCGATTATCGCAGGCCGCA+CGG + Chr7:93277498-93277517 None:intergenic 55.0%
ATCGGGGAAAAAAGGGGAGG+GGG - Chr7:93279233-93279252 MsG0780041633.01.T01:intron 55.0%
CAAATTCTTCCCCGTCTCCC+GGG - Chr7:93280128-93280147 MsG0780041633.01.T01:intron 55.0%
CAACTCCAACTGTTGCGCCT+AGG - Chr7:93279560-93279579 MsG0780041633.01.T01:intron 55.0%
GAAAGCCTAGGCGCAACAGT+TGG + Chr7:93279568-93279587 None:intergenic 55.0%
GAGTGAAGAAACCCGGGAGA+CGG + Chr7:93280142-93280161 None:intergenic 55.0%
GCACAAAGGCTCTTCGGAAG+AGG - Chr7:93278467-93278486 MsG0780041633.01.T01:intron 55.0%
GCAGGTTGCAGTTGCTGCTA+TGG - Chr7:93277873-93277892 MsG0780041633.01.T01:intron 55.0%
GCCGAGTTTGGATCGGAGTT+TGG + Chr7:93277711-93277730 None:intergenic 55.0%
TGGAGTTGCTTCCGTGTGAC+AGG + Chr7:93279548-93279567 None:intergenic 55.0%
! AGTGATAGTGTGTGCGGTGC+TGG - Chr7:93277422-93277441 MsG0780041633.01.T01:three_prime_UTR 55.0%
! GTGGCTATGGCAAAGGCACA+AGG - Chr7:93279654-93279673 MsG0780041633.01.T01:intron 55.0%
!! AGCAGCCAAAGCGTTGGAGA+AGG - Chr7:93280599-93280618 MsG0780041633.01.T01:CDS 55.0%
!! ATAATGGTGGCGGAGGAGCT+TGG - Chr7:93277603-93277622 MsG0780041633.01.T01:three_prime_UTR 55.0%
!! TAATGGTGGCGGAGGAGCTT+GGG - Chr7:93277604-93277623 MsG0780041633.01.T01:three_prime_UTR 55.0%
GGCTCTTCGGAAGAGGTTCC+CGG - Chr7:93278474-93278493 MsG0780041633.01.T01:intron 60.0%
GTGAAGAAACCCGGGAGACG+GGG + Chr7:93280140-93280159 None:intergenic 60.0%
TCGATTATCGCAGGCCGCAC+GGG + Chr7:93277497-93277516 None:intergenic 60.0%
TCGGGGAAAAAAGGGGAGGG+GGG - Chr7:93279234-93279253 MsG0780041633.01.T01:intron 60.0%
! CATCGGCGCCGAGTTTGGAT+CGG + Chr7:93277718-93277737 None:intergenic 60.0%
! GATACCATCGGCGCCGAGTT+TGG + Chr7:93277723-93277742 None:intergenic 60.0%
!! CAGGTCGATAATGGTGGCGG+AGG - Chr7:93277596-93277615 MsG0780041633.01.T01:three_prime_UTR 60.0%
!! TGCGGTGCTGGCAAAAACCG+TGG - Chr7:93277434-93277453 MsG0780041633.01.T01:three_prime_UTR 60.0%
! CGATCCAAACTCGGCGCCGA+TGG - Chr7:93277716-93277735 MsG0780041633.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 93277362 93280958 93277362 ID=MsG0780041633.01;Name=MsG0780041633.01
Chr7 mRNA 93277362 93280958 93277362 ID=MsG0780041633.01.T01;Parent=MsG0780041633.01;Name=MsG0780041633.01.T01;_AED=0.34;_eAED=0.36;_QI=189|0.62|0.88|1|1|1|9|263|281
Chr7 exon 93277362 93277795 93277362 ID=MsG0780041633.01.T01:exon:20392;Parent=MsG0780041633.01.T01
Chr7 exon 93277947 93278060 93277947 ID=MsG0780041633.01.T01:exon:20391;Parent=MsG0780041633.01.T01
Chr7 exon 93278239 93278320 93278239 ID=MsG0780041633.01.T01:exon:20390;Parent=MsG0780041633.01.T01
Chr7 exon 93278422 93278481 93278422 ID=MsG0780041633.01.T01:exon:20389;Parent=MsG0780041633.01.T01
Chr7 exon 93278599 93278684 93278599 ID=MsG0780041633.01.T01:exon:20388;Parent=MsG0780041633.01.T01
Chr7 exon 93279809 93279857 93279809 ID=MsG0780041633.01.T01:exon:20387;Parent=MsG0780041633.01.T01
Chr7 exon 93280254 93280285 93280254 ID=MsG0780041633.01.T01:exon:20386;Parent=MsG0780041633.01.T01
Chr7 exon 93280399 93280463 93280399 ID=MsG0780041633.01.T01:exon:20385;Parent=MsG0780041633.01.T01
Chr7 exon 93280583 93280958 93280583 ID=MsG0780041633.01.T01:exon:20384;Parent=MsG0780041633.01.T01
Chr7 five_prime_UTR 93280770 93280958 93280770 ID=MsG0780041633.01.T01:five_prime_utr;Parent=MsG0780041633.01.T01
Chr7 CDS 93280583 93280769 93280583 ID=MsG0780041633.01.T01:cds;Parent=MsG0780041633.01.T01
Chr7 CDS 93280399 93280463 93280399 ID=MsG0780041633.01.T01:cds;Parent=MsG0780041633.01.T01
Chr7 CDS 93280254 93280285 93280254 ID=MsG0780041633.01.T01:cds;Parent=MsG0780041633.01.T01
Chr7 CDS 93279809 93279857 93279809 ID=MsG0780041633.01.T01:cds;Parent=MsG0780041633.01.T01
Chr7 CDS 93278599 93278684 93278599 ID=MsG0780041633.01.T01:cds;Parent=MsG0780041633.01.T01
Chr7 CDS 93278422 93278481 93278422 ID=MsG0780041633.01.T01:cds;Parent=MsG0780041633.01.T01
Chr7 CDS 93278239 93278320 93278239 ID=MsG0780041633.01.T01:cds;Parent=MsG0780041633.01.T01
Chr7 CDS 93277947 93278060 93277947 ID=MsG0780041633.01.T01:cds;Parent=MsG0780041633.01.T01
Chr7 CDS 93277625 93277795 93277625 ID=MsG0780041633.01.T01:cds;Parent=MsG0780041633.01.T01
Chr7 three_prime_UTR 93277362 93277624 93277362 ID=MsG0780041633.01.T01:three_prime_utr;Parent=MsG0780041633.01.T01
Gene Sequence

>MsG0780041633.01.T01

ATGGTAACGAAAACAGAGGAATCTGAATTGAAGAATCTAGAAATTCAGGTCGATAATGGTGGCGGAGGAGCTTGGGAGTATCTTTCCCTCGTCAGAAAACTCAAGGTCCGTCGTTCTGATAAAGTCCTCAAGCATGGATTGTCCATCTTGAATGATTCCAAACTCCGATCCAAACTCGGCGCCGATGAATGGACTTTGTATGAGCAGGTTGCAGTTGCTGCTATGGATTGTCAATGTCTTGATGTTGCTCAGGGAATCTTATGCATAGCTGGTTCTAGTTTTCCGACTGCACAAAGGCTCTTCGGAAGAGGTTCCCGGAGAGCAAAAGAGTTGATCATCCATAAAAGGAGGGTGGCTATGGCAAAGGCACAAGGCAATATTTCTGGGGCTATTGAATGGCTTAATAAATATCTAGAAATATTCATGGCAGATCACGATGCATGGAGAGAACTAGCTGAAATATACTCATCCCTGCAAATGTATAAACAAGCAGCATTTTGCTACGAGGAAGTGATATTAGCTCAACCAACTGTACCACTTTATCACTTAGCATATGCTGATGTACTTTATACGCTTGGTGGATTAGAAAATGTCCAAACTGCCAAGAAATACTATGCATCCACTATTGACTTAACTGGAGGCAAGAATACCAGAGCTCTCTTCGGTATATGCTTGTGCACTTCTGCTATTGCACAACTTACAAAAGGGAAGAACAAGGAAGATAAAGAAGGATCACAGTTACAATCTCTAGCAGCCAAAGCGTTGGAGAAGGATTACAAGCAGAGAGCTCCTGACAAGCTTCCTCAACTTACAACTGCCTTGAAGAGTTTAACATTGTCGTCATGA
Protein sequence

>MsG0780041633.01.T01

MVTKTEESELKNLEIQVDNGGGGAWEYLSLVRKLKVRRSDKVLKHGLSILNDSKLRSKLGADEWTLYEQVAVAAMDCQCLDVAQGILCIAGSSFPTAQRLFGRGSRRAKELIIHKRRVAMAKAQGNISGAIEWLNKYLEIFMADHDAWRELAEIYSSLQMYKQAAFCYEEVILAQPTVPLYHLAYADVLYTLGGLENVQTAKKYYASTIDLTGGKNTRALFGICLCTSAIAQLTKGKNKEDKEGSQLQSLAAKALEKDYKQRAPDKLPQLTTALKSLTLSS*