AlfalfaGEDB | MsG0780035953.01

M. sativa cultivar ZhongmuNo.1 / MsG0780035953.01

KEGG: -
GO: GO:0004842 GO:0005488 GO:0016567
PFAM: PF04564

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780035953.01.T01	XP_003621006.1	88.739	1110	53	3	1	1075	1	1073	0	1952

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780035953.01.T01	D1FP57	27.419	372	242	11	700	1066	850	1198	2.77E-23	111

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780035953.01.T01	A2Q2S4	88.739	1110	53	3	1	1075	1	1073	0.0	1952

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0780035953.01	0.805839	1.099891e-49	5.879397e-47
MsG0080047967.01	MsG0780035953.01	-0.801727	7.855265e-49	3.778783e-46
MsG0080048036.01	MsG0780035953.01	0.861716	8.437394e-64	2.409151e-60
MsG0080048059.01	MsG0780035953.01	-0.801609	8.305553e-49	3.983426e-46
MsG0080048134.01	MsG0780035953.01	0.800131	1.664149e-48	7.688661e-46
MsG0080048301.01	MsG0780035953.01	0.809417	1.911777e-50	1.121890e-47
MsG0080048345.01	MsG0780035953.01	0.820767	5.764349e-53	4.602972e-50
MsG0080048347.01	MsG0780035953.01	0.868380	6.815931e-66	2.460406e-62
MsG0080048348.01	MsG0780035953.01	0.807136	5.858439e-50	3.237380e-47
MsG0080048349.01	MsG0780035953.01	0.822347	2.486534e-53	2.075942e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780035953.01.T01	MTR_7g005940	88.739	1110	53	3	1	1075	1	1073	0.0	1952
MsG0780035953.01.T01	MTR_7g005940	91.401	1035	53	2	1	1000	1	1034	0.0	1889
MsG0780035953.01.T01	MTR_4g083620	41.778	225	121	6	195	410	98	321	8.46e-43	160
MsG0780035953.01.T01	MTR_2g028940	35.448	268	137	9	165	422	41	282	1.39e-32	136
MsG0780035953.01.T01	MTR_2g028940	35.448	268	137	9	165	422	41	282	3.37e-32	135
MsG0780035953.01.T01	MTR_2g028940	30.387	362	237	6	643	1001	558	907	5.61e-30	129
MsG0780035953.01.T01	MTR_2g028940	35.448	268	137	9	165	422	41	282	3.76e-32	135
MsG0780035953.01.T01	MTR_2g028940	31.230	317	210	4	688	1001	596	907	5.74e-30	129
MsG0780035953.01.T01	MTR_1g090320	29.900	301	198	7	701	996	854	1146	4.41e-23	107
MsG0780035953.01.T01	MTR_1g090320	48.101	79	41	0	597	675	514	592	8.60e-20	96.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780035953.01.T01	AT1G23030	23.263	331	222	9	595	918	240	545	1.14e-12	72.8
MsG0780035953.01.T01	AT1G76390	38.384	99	50	3	586	679	20	112	2.74e-12	71.6
MsG0780035953.01.T01	AT1G76390	38.384	99	50	3	586	679	20	112	2.74e-12	71.6
MsG0780035953.01.T01	AT5G42340	30.058	173	118	3	584	755	278	448	4.06e-12	70.9
MsG0780035953.01.T01	AT1G68940	38.053	113	49	6	565	664	265	369	1.69e-11	69.3
MsG0780035953.01.T01	AT1G68940	38.053	113	49	6	565	664	265	369	1.72e-11	69.3
MsG0780035953.01.T01	AT1G68940	38.053	113	49	6	565	664	212	316	1.98e-11	68.9
MsG0780035953.01.T01	AT3G07360	40.580	69	40	1	595	663	73	140	4.25e-11	67.0
MsG0780035953.01.T01	AT1G20780	38.202	89	49	2	596	679	23	110	4.66e-11	67.8
MsG0780035953.01.T01	AT1G20780	38.202	89	49	2	596	679	23	110	4.66e-11	67.8

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Find 152 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTTATGATTCTTTCTT+TGG	0.229672	7:-472456	MsG0780035953.01.T01:CDS
AAAGAAAAGAAGGAACAATT+GGG	0.435116	7:-473592	MsG0780035953.01.T01:CDS
AAAGAAAAGCCATCAAGGCA+TGG	0.569716	7:-471682	MsG0780035953.01.T01:CDS
AAAGAGAAGAATTCCAGAAA+TGG	0.476144	7:-472027	MsG0780035953.01.T01:CDS
AAAGGGAAACAGAACATGTC+CGG	0.542373	7:-471654	MsG0780035953.01.T01:CDS
AAAGGTTTGACCTGACTCTA+AGG	0.329503	7:+471706	None:intergenic
AAATGACACATATAATGAGA+CGG	0.651445	7:+469562	None:intergenic
AACAGAACATGTCCGGTAAC+AGG	0.401864	7:-471647	MsG0780035953.01.T01:CDS
AACCTTGTCATCATTTAAGC+TGG	0.455375	7:+470273	None:intergenic
AACTGTGAGAGAGGTTCTTA+TGG	0.343570	7:-472378	MsG0780035953.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGAAGAATTCCAGAAA+TGG	-	Chr7:471038-471057	MsG0780035953.01.T01:intron	30.0%
AAAGGTGAAATTATTACCAC+AGG	+	Chr7:470822-470841	None:intergenic	30.0%
AAGAAAAGAAGGAACAATTG+GGG	-	Chr7:469474-469493	MsG0780035953.01.T01:intron	30.0%
AATAATATTTGACAGCGGAA+AGG	-	Chr7:470987-471006	MsG0780035953.01.T01:intron	30.0%
AATTCATCAGATAGTGATAG+TGG	-	Chr7:469404-469423	MsG0780035953.01.T01:intron	30.0%
AGATAAAGTCAGTTAATGGT+TGG	+	Chr7:470504-470523	None:intergenic	30.0%
AGCATATATGAATCCTTCAA+TGG	+	Chr7:469506-469525	None:intergenic	30.0%
ATAGTAGGGGTTATCTTATT+TGG	+	Chr7:471164-471183	None:intergenic	30.0%
ATATGCAACTAGAATCTGAT+CGG	+	Chr7:471767-471786	None:intergenic	30.0%
ATTATCTTCCTTGAAAGAAG+AGG	-	Chr7:471620-471639	MsG0780035953.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	469089	473998	469089	ID=MsG0780035953.01;Name=MsG0780035953.01
Chr7	mRNA	469089	473998	469089	ID=MsG0780035953.01.T01;Parent=MsG0780035953.01;Name=MsG0780035953.01.T01;_AED=0.16;_eAED=0.16;_QI=0\|0\|0\|1\|1\|1\|9\|0\|1075
Chr7	exon	472709	473998	472709	ID=MsG0780035953.01.T01:exon:38299;Parent=MsG0780035953.01.T01
Chr7	exon	472263	472553	472263	ID=MsG0780035953.01.T01:exon:38298;Parent=MsG0780035953.01.T01
Chr7	exon	471899	472085	471899	ID=MsG0780035953.01.T01:exon:38297;Parent=MsG0780035953.01.T01
Chr7	exon	471513	471800	471513	ID=MsG0780035953.01.T01:exon:38296;Parent=MsG0780035953.01.T01
Chr7	exon	471186	471408	471186	ID=MsG0780035953.01.T01:exon:38295;Parent=MsG0780035953.01.T01
Chr7	exon	470662	470806	470662	ID=MsG0780035953.01.T01:exon:38294;Parent=MsG0780035953.01.T01
Chr7	exon	470099	470365	470099	ID=MsG0780035953.01.T01:exon:38293;Parent=MsG0780035953.01.T01
Chr7	exon	469559	469976	469559	ID=MsG0780035953.01.T01:exon:38292;Parent=MsG0780035953.01.T01
Chr7	exon	469089	469207	469089	ID=MsG0780035953.01.T01:exon:38291;Parent=MsG0780035953.01.T01
Chr7	CDS	472709	473998	472709	ID=MsG0780035953.01.T01:cds;Parent=MsG0780035953.01.T01
Chr7	CDS	472263	472553	472263	ID=MsG0780035953.01.T01:cds;Parent=MsG0780035953.01.T01
Chr7	CDS	471899	472085	471899	ID=MsG0780035953.01.T01:cds;Parent=MsG0780035953.01.T01
Chr7	CDS	471513	471800	471513	ID=MsG0780035953.01.T01:cds;Parent=MsG0780035953.01.T01
Chr7	CDS	471186	471408	471186	ID=MsG0780035953.01.T01:cds;Parent=MsG0780035953.01.T01
Chr7	CDS	470662	470806	470662	ID=MsG0780035953.01.T01:cds;Parent=MsG0780035953.01.T01
Chr7	CDS	470099	470365	470099	ID=MsG0780035953.01.T01:cds;Parent=MsG0780035953.01.T01
Chr7	CDS	469559	469976	469559	ID=MsG0780035953.01.T01:cds;Parent=MsG0780035953.01.T01
Chr7	CDS	469089	469207	469089	ID=MsG0780035953.01.T01:cds;Parent=MsG0780035953.01.T01

Gene Sequence

>MsG0780035953.01.T01

ATGGCTTCATCTTTGGAGCAGCTTCTTGCACAGGAAGGGTTCAAAGCAAGCGGCAGAAAAGTGCAAAGGTCAAGATCTTCTTTCCATCATGGTAATTCAAGTGATCCTCTTCACTCTTTGGAAGATAGACTGTGTGTATCATCAAGTGAAAGAATTAAAACACAGAAAACAAAGTCTAAAACAGCCTCAAGATATCAGATAAGCAATACAAGTGACAATAAAAACATGAGATCAAGTGATAATAATGTTTTTATAGGAAACAAGTTAAATAACGAAGGGTCGAAGAACAGTGAATCTGAGAAGAACAAGTCTTACAATTCATCAGATAGTGATAGTGGATTTGACGATGCTTATTCAAACCAAGTGTCTAATGTGAAAAGAGGCAAAGAAAAGAAGGAACAATTGGGGGAAAAGCCATTGAAGGATTCATATATGCTTAGACAATTGAGTGGAAATAGAAAGAATATAAAACATCAAGAAAAATCATACTCTAGATCAAATAGTAATAGCAAAAACTATGAAGATAGCAAGAACAAAAATAGCAATCATGTTATGCAATTGCAAGATGCTTCTAGTCTTGCTATTGATGAAATTGCCGTGAAAGCACTAGTTTCCATTCTGAATGGATACATAGAAAGTTTTCTAACGGATGAAGATTTTCGGTCGGCATTGCGCCACAATTGTTTCTCCTCTTTGAATTTCATTCAACTTGAGGAAGAGCGCAATTCTGAGACCAAGGTGATTACAAGTCTTGAGCAAGCAATTGAGTGCACAGAAAAAACTGCTGCTGAGGAAACTATATCTGCAACACATCTTAAAAGAGCAACAATGCAGCTTAGCATTATTACTGGTTTGAGTTTGAATGATCTCAAGTACGATTTTACGTGCGGGATTCAAAATTTCAAGTTATCAGCTTGTGCTCATCTTTACCTCAGTGTTGTATATTTGATCCAAAGAAAAAAGAAAGTTTCGGCGAAGCATCTTTTGCAAGTGTTTTGCGACTCTCCTTTTCAGGCGCGGACGATATTGTTGCCTGAACTTTGGGAGCGTCTATTTTCTTCGCAACTTTCTGATTTGAAGAAATGGTATGACAACAAGGAAAGTGAAATTGTTTTAGATACACAAAACAAAGCAAGAAAGATAAAGATTCTCCAGAAAGTGTATAATGAAAGTTTGGATTCAGGAACTCAATTATTTGCTTTATATTACAAAGATTGGCTCAGTGAAGGAGTAGAAACTCCAACTATTCCTTCCATCGGAATTCCATCATTATCCATTACGAGTCGACAGGGAAGTTCACTTGGTCATTCTTTTGAGTCTTCTAGCTCCAACGAACCATTCTCGCCACAGGCAATGGTCAGCAAAAAACTTTATGATTCTTTCTTTGGTAGTAAACCTCAAGTCTATGAAGTTGAAGTTGATGAGGATGAAGATAGCTTTGAAAACTGTGAGAGAGGTTCTTATGGTTCGACCATCGTTAAAAAAACATTAATATATGAATCAGAAACTGTTAAATATATCGATCAAAGTACTGAAGAGTTCACTCCAAGAGTACCAGTTCATGAATTCTATATACCTGTGCGGAAAGGAACATCAAGGACAGCTGCAGAAGAATGGAAAGAGAAGAATTCCAGAAATGGCACTAGAAAATATTTCTCCATAGAAACTAATTTAAACAGTCACATATCTAATGATCTACCACATGAAAAAGCAAATGAAATTTCTATCAAAAAGATGCAGCCAAATAAGATAACCCCTACTATTGATGGATCATATTCTCCAAGCATACCACAGGAATTTATTTGTCCTCTGACAAGAAATATCTTTGAGGAACCAGTTACCTTAGAGTCAGGTCAAACCTTTGAAAGAAAAGCCATCAAGGCATGGTTTCAAAAGGGAAACAGAACATGTCCGGTAACAGGAAATACTTTAGAATGTGTAGTCATACCATTTAGCAACCTTATTTTGAAGCGTTTGATCGATAACTGGAAGTCAGAAGATTTTGATTGCCTTCTTGATTTTGCCTCTCAAACTGTGGAAATTCGAAGGAAATTAAGGGTTCTTTCGTTTCTCTGTAGGAGGTTTGAACAAGGAAATTTGGAAGAAAAATCACATGTGATCGAGATCTTGTTAAATTGTATCCGATCAGATTCTAGTTGCATATATAAGATAGCAAGGGGTGTCAACAGAAAATTTCTTCTTGAGCTTCTTCACAGTAAGGATGTTACCCCAACAAAAAATGCAATACTATTCCTTACTGAACTTTTGTCAATGAAGAGAAGAAAGGATGTCACTTCTTTCATAAGTGGCTTGGTGGGTGAAGATGTAGTTAGTACAATGCATATTGTGCTCATGCATCTTAAGAATTCTTCTCCAATTGAAAAGCCCCTCATCGCTGTCCTCTTATTACACTTTGAACTACTGGTTGAGCAGCCTCAAAAGTTTAGCATATACATAGAGATGGCTGTGAATGCCATTGCAGAGGCACTTGATGCCAGCTTAAATGATGACAAGGTTCAAAAGAAGTGTTGCAGAGCTATTTTAATCTTGTGTGGCCATTTTTCTTCCACTGGAATGATAACAAATAATACTACCATCTTAAAGAAAGCAGGTTATAATAATGGTAGCTCAGAATTGAAATCTCCTAGCCTTGATGAAGAGGATCAACGGCTAAATGTAACCATTTCGTCGGAAGATGAAGAAGAAGAAATGGATGAAGAGTTCATGGCAAACTTGTTAGAATCAATGATTGGTGATGGAGAAAGTCTATTTTTGAAGACCATATCTAGATGTTTAGATTCTAGACATGTAGATTTGATGAGGGCTTGTCTAATAACTGTTACATGGTTGAGTTCCTCACTTTCTAAACAGTATAATGCTGGATTGCATCTTCCTGCCTTCTTAGCTATCATCTCTCAGCTGAAAGGAATCCTTGAGAATGAAGAACTTGAGCTCAAGACTCTTGCATCTATGTCCTTGTTCAACTTCAGTAAAATATCAGGTTTGGCACCATCACCGTTTATTTGTGATAAAAATCTTGCTAATTTCGGAACTATTGAAAGCAATTTTAAATGTTATTCCCTCCGTCTCATTATATGTGTCATTTTAGAATGCAGAACACTTTTGAAGATTATGGCAGACGATATTGCTCCCCTTCTTCATGGACTAGTTGATGTATTATGGACTGCTAAGAAACTGCATGCCATTTTGTATAGGGAGAATCTGTAG

Protein sequence

>MsG0780035953.01.T01

MASSLEQLLAQEGFKASGRKVQRSRSSFHHGNSSDPLHSLEDRLCVSSSERIKTQKTKSKTASRYQISNTSDNKNMRSSDNNVFIGNKLNNEGSKNSESEKNKSYNSSDSDSGFDDAYSNQVSNVKRGKEKKEQLGEKPLKDSYMLRQLSGNRKNIKHQEKSYSRSNSNSKNYEDSKNKNSNHVMQLQDASSLAIDEIAVKALVSILNGYIESFLTDEDFRSALRHNCFSSLNFIQLEEERNSETKVITSLEQAIECTEKTAAEETISATHLKRATMQLSIITGLSLNDLKYDFTCGIQNFKLSACAHLYLSVVYLIQRKKKVSAKHLLQVFCDSPFQARTILLPELWERLFSSQLSDLKKWYDNKESEIVLDTQNKARKIKILQKVYNESLDSGTQLFALYYKDWLSEGVETPTIPSIGIPSLSITSRQGSSLGHSFESSSSNEPFSPQAMVSKKLYDSFFGSKPQVYEVEVDEDEDSFENCERGSYGSTIVKKTLIYESETVKYIDQSTEEFTPRVPVHEFYIPVRKGTSRTAAEEWKEKNSRNGTRKYFSIETNLNSHISNDLPHEKANEISIKKMQPNKITPTIDGSYSPSIPQEFICPLTRNIFEEPVTLESGQTFERKAIKAWFQKGNRTCPVTGNTLECVVIPFSNLILKRLIDNWKSEDFDCLLDFASQTVEIRRKLRVLSFLCRRFEQGNLEEKSHVIEILLNCIRSDSSCIYKIARGVNRKFLLELLHSKDVTPTKNAILFLTELLSMKRRKDVTSFISGLVGEDVVSTMHIVLMHLKNSSPIEKPLIAVLLLHFELLVEQPQKFSIYIEMAVNAIAEALDASLNDDKVQKKCCRAILILCGHFSSTGMITNNTTILKKAGYNNGSSELKSPSLDEEDQRLNVTISSEDEEEEMDEEFMANLLESMIGDGESLFLKTISRCLDSRHVDLMRACLITVTWLSSSLSKQYNAGLHLPAFLAIISQLKGILENEELELKTLASMSLFNFSKISGLAPSPFICDKNLANFGTIESNFKCYSLRLIICVILECRTLLKIMADDIAPLLHGLVDVLWTAKKLHAILYRENL*