AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0398810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398810 MtrunA17_Chr3g0086861 80.149 403 50 5 1 381 1 395 3.39e-179 511
Msa0398810 MtrunA17_Chr3g0086861 76.015 271 22 6 242 479 175 435 2.01e-90 284
Msa0398810 MtrunA17_Chr4g0061451 72.800 125 32 1 1 125 1 123 3.67e-62 204
Msa0398810 MtrunA17_Chr7g0219021 60.938 128 46 2 1 128 1 124 4.63e-47 164
Msa0398810 MtrunA17_Chr7g0219031 59.091 110 41 2 1 110 1 106 4.84e-33 122
Msa0398810 MtrunA17_Chr3g0121631 46.774 124 57 3 1 124 1 115 6.99e-29 111
Msa0398810 MtrunA17_Chr3g0119311 52.439 82 39 0 45 126 37 118 3.14e-22 92.8
Msa0398810 MtrunA17_Chr4g0035001 52.703 74 35 0 45 118 7 80 7.31e-21 89.7
Msa0398810 MtrunA17_Chr4g0035051 49.351 77 39 0 45 121 9 85 2.77e-20 86.7
Msa0398810 MtrunA17_Chr3g0116631 44.211 95 51 1 33 127 197 289 3.56e-20 90.9
Msa0398810 MtrunA17_Chr3g0116631 44.706 85 45 1 43 127 108 190 3.18e-12 67.4
Msa0398810 MtrunA17_Chr7g0266751 41.346 104 61 0 45 148 33 136 4.09e-20 86.7
Msa0398810 MtrunA17_Chr4g0035031 48.052 77 40 0 45 121 9 85 8.74e-20 87.4
Msa0398810 MtrunA17_Chr7g0263001 39.683 126 66 2 1 125 1 117 1.30e-19 85.5
Msa0398810 MtrunA17_Chr2g0278661 40.476 84 50 0 38 121 1 84 7.16e-19 86.3
Msa0398810 MtrunA17_Chr4g0058151 51.220 82 40 0 47 128 219 300 7.60e-19 87.4
Msa0398810 MtrunA17_Chr4g0058151 42.857 84 46 1 43 126 121 202 1.10e-12 68.9
Msa0398810 MtrunA17_Chr4g0031091 40.000 90 54 0 33 122 22 111 8.75e-19 82.0
Msa0398810 MtrunA17_Chr1g0210241 40.698 86 51 0 38 123 1 86 2.54e-18 85.1
Msa0398810 MtrunA17_Chr1g0181111 45.349 86 47 0 43 128 195 280 3.12e-18 85.1
Msa0398810 MtrunA17_Chr4g0042161 44.578 83 46 0 42 124 49 131 3.63e-18 81.3
Msa0398810 MtrunA17_Chr3g0088511 40.196 102 57 2 19 118 7 106 5.89e-16 74.7
Msa0398810 MtrunA17_Chr6g0481071 41.250 80 47 0 44 123 95 174 1.71e-15 74.7
Msa0398810 MtrunA17_Chr3g0144311 41.237 97 54 3 32 126 16 111 3.78e-15 75.9
Msa0398810 MtrunA17_Chr3g0101061 38.017 121 71 2 3 123 1 117 5.27e-15 77.8
Msa0398810 MtrunA17_Chr5g0447761 44.304 79 42 1 45 123 7 83 2.32e-14 75.5
Msa0398810 MtrunA17_Chr4g0017401 38.824 85 49 2 38 121 10 92 6.14e-14 72.0
Msa0398810 MtrunA17_Chr7g0276531 42.169 83 47 1 38 120 12 93 7.04e-14 71.6
Msa0398810 MtrunA17_Chr3g0127751 39.326 89 49 2 44 130 26 111 8.39e-14 71.6
Msa0398810 MtrunA17_Chr2g0327921 42.500 80 46 0 44 123 7 86 1.08e-13 66.6
Msa0398810 MtrunA17_Chr4g0042151 41.379 87 49 1 39 125 39 123 1.28e-13 69.3
Msa0398810 MtrunA17_Chr3g0110211 40.506 79 46 1 46 123 114 192 1.90e-13 72.0
Msa0398810 MtrunA17_Chr1g0168601 41.463 82 46 1 42 121 149 230 2.36e-13 69.7
Msa0398810 MtrunA17_Chr8g0346011 32.051 156 82 4 44 176 37 191 2.75e-13 70.5
Msa0398810 MtrunA17_Chr3g0135111 41.837 98 55 1 45 142 11 106 3.22e-13 71.2
Msa0398810 MtrunA17_Chr5g0419351 36.957 92 57 1 40 130 6 97 3.72e-13 67.8
Msa0398810 MtrunA17_Chr1g0198431 37.500 80 50 0 45 124 193 272 3.83e-13 70.1
Msa0398810 MtrunA17_Chr4g0050441 43.421 76 43 0 46 121 18 93 9.76e-13 68.9
Msa0398810 MtrunA17_Chr5g0429941 43.421 76 43 0 46 121 18 93 1.43e-12 68.2
Msa0398810 MtrunA17_Chr7g0267571 32.090 134 82 3 45 178 110 234 2.28e-12 68.2
Msa0398810 MtrunA17_Chr1g0186351 36.986 73 43 1 45 114 7 79 2.69e-12 68.9
Msa0398810 MtrunA17_Chr1g0186351 39.474 76 45 1 45 120 113 187 7.58e-11 64.3
Msa0398810 MtrunA17_Chr5g0426311 40.476 84 49 1 38 121 10 92 5.89e-12 66.6
Msa0398810 MtrunA17_Chr4g0070231 41.558 77 45 0 46 122 133 209 5.97e-12 67.8
Msa0398810 MtrunA17_Chr8g0344491 40.260 77 46 0 46 122 149 225 6.19e-12 67.8
Msa0398810 MtrunA17_Chr1g0201001 39.080 87 50 1 38 121 20 106 6.97e-12 67.8
Msa0398810 MtrunA17_Chr7g0268551 40.000 80 48 0 39 118 343 422 8.39e-12 67.4
Msa0398810 MtrunA17_Chr3g0139111 38.961 77 47 0 46 122 147 223 3.50e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398810 AT5G61030.2 57.724 123 48 2 1 123 1 119 1.74e-45 162
Msa0398810 AT5G61030.1 57.724 123 48 2 1 123 1 119 1.74e-45 162
Msa0398810 AT1G74230.1 54.918 122 44 3 1 122 1 111 9.45e-37 138
Msa0398810 AT4G13850.4 46.094 128 52 3 1 124 1 115 1.76e-27 107
Msa0398810 AT4G13850.3 46.094 128 52 3 1 124 1 115 2.04e-27 107
Msa0398810 AT4G13850.2 46.094 128 52 3 1 124 1 115 2.63e-27 107
Msa0398810 AT4G13850.1 46.094 128 52 3 1 124 1 115 3.02e-27 107
Msa0398810 AT3G23830.2 50.562 89 41 1 43 128 34 122 8.03e-25 100
Msa0398810 AT3G23830.1 50.562 89 41 1 43 128 34 122 8.03e-25 100
Msa0398810 AT5G06210.1 48.454 97 42 1 44 140 34 122 2.62e-23 96.3
Msa0398810 AT4G24770.1 51.807 83 40 0 42 124 242 324 1.54e-21 96.3
Msa0398810 AT4G24770.1 46.341 82 42 1 45 126 151 230 9.57e-14 72.8
Msa0398810 AT4G24770.2 51.807 83 40 0 42 124 242 324 1.54e-21 96.3
Msa0398810 AT4G24770.2 46.341 82 42 1 45 126 151 230 9.57e-14 72.8
Msa0398810 AT2G21660.1 49.398 83 42 0 39 121 3 85 5.88e-20 87.8
Msa0398810 AT1G18630.1 48.148 81 41 1 38 118 31 110 6.29e-20 87.0
Msa0398810 AT3G08000.1 53.012 83 39 0 45 127 42 124 7.00e-20 86.7
Msa0398810 AT5G50250.1 50.617 81 40 0 45 125 208 288 5.01e-19 88.2
Msa0398810 AT5G50250.1 45.783 83 43 1 45 127 114 194 1.11e-14 75.1
Msa0398810 AT2G37220.1 48.750 80 41 0 45 124 205 284 5.25e-19 87.8
Msa0398810 AT2G37220.1 38.053 113 59 3 12 118 58 165 8.90e-12 66.6
Msa0398810 AT3G26420.1 38.095 84 52 0 38 121 1 84 1.14e-17 83.2
Msa0398810 AT2G37510.1 49.351 77 38 1 36 112 27 102 2.41e-17 79.3
Msa0398810 AT2G21660.2 50.000 82 41 0 39 120 3 84 2.83e-17 79.7
Msa0398810 AT5G59865.1 41.053 95 55 1 30 123 11 105 3.50e-17 77.8
Msa0398810 AT3G53460.1 47.059 85 44 1 45 128 258 342 3.61e-17 83.6
Msa0398810 AT3G53460.3 47.059 85 44 1 45 128 258 342 3.61e-17 83.6
Msa0398810 AT3G53460.2 47.059 85 44 1 45 128 258 342 3.61e-17 83.6
Msa0398810 AT3G53460.4 47.059 85 44 1 45 128 279 363 5.75e-17 83.2
Msa0398810 AT1G73530.1 40.206 97 51 1 42 131 75 171 7.38e-17 79.0
Msa0398810 AT4G13860.1 48.684 76 39 0 44 119 3 78 2.28e-16 74.7
Msa0398810 AT2G27330.1 46.154 78 42 0 38 115 15 92 2.95e-16 75.5
Msa0398810 AT5G04280.1 38.614 101 60 1 44 144 7 105 2.99e-16 80.1
Msa0398810 AT5G47320.1 48.148 81 42 0 44 124 31 111 3.24e-16 78.2
Msa0398810 AT3G54770.3 42.353 85 48 1 37 121 10 93 3.36e-16 79.0
Msa0398810 AT3G54770.1 42.353 85 48 1 37 121 10 93 3.48e-16 79.0
Msa0398810 AT4G39260.1 44.737 76 42 0 45 120 7 82 8.49e-16 75.9
Msa0398810 AT3G46020.1 41.573 89 50 1 43 129 6 94 2.14e-15 72.4
Msa0398810 AT1G76460.1 41.935 93 52 2 38 129 18 109 2.47e-15 77.0
Msa0398810 AT4G39260.3 44.578 83 46 0 45 127 7 89 5.57e-15 70.9
Msa0398810 AT2G21690.1 43.662 71 40 0 47 117 10 80 8.75e-15 71.2
Msa0398810 AT3G07810.1 43.210 81 44 1 43 123 5 83 2.11e-14 76.3
Msa0398810 AT3G07810.2 43.210 81 44 1 43 123 5 83 2.19e-14 76.3
Msa0398810 AT5G54580.1 44.048 84 45 1 42 125 54 135 2.65e-14 71.2
Msa0398810 AT1G22330.1 40.678 118 62 5 38 151 11 124 2.80e-14 73.9
Msa0398810 AT5G55550.5 45.570 79 41 1 45 123 7 83 3.34e-14 75.1
Msa0398810 AT5G55550.4 45.570 79 41 1 45 123 7 83 3.34e-14 75.1
Msa0398810 AT5G55550.9 45.570 79 41 1 45 123 7 83 3.34e-14 75.1
Msa0398810 AT5G55550.7 45.570 79 41 1 45 123 7 83 3.34e-14 75.1
Msa0398810 AT5G55550.1 45.570 79 41 1 45 123 7 83 3.34e-14 75.1
Msa0398810 AT1G22910.2 40.506 79 44 2 44 121 13 89 3.61e-14 72.8
Msa0398810 AT2G46780.1 37.778 90 52 2 39 125 17 105 3.83e-14 74.3
Msa0398810 AT2G46780.2 37.778 90 52 2 39 125 17 105 3.83e-14 74.3
Msa0398810 AT1G22910.1 40.506 79 44 2 44 121 13 89 4.14e-14 72.8
Msa0398810 AT5G55550.2 45.570 79 41 1 45 123 7 83 4.21e-14 75.1
Msa0398810 AT5G55550.3 45.570 79 41 1 45 123 7 83 4.21e-14 75.1
Msa0398810 AT5G55550.6 45.570 79 41 1 45 123 7 83 4.21e-14 75.1
Msa0398810 AT5G55550.11 45.570 79 41 1 45 123 7 83 4.21e-14 75.1
Msa0398810 AT1G60000.1 45.122 82 43 1 42 121 173 254 6.03e-14 72.4
Msa0398810 AT5G55550.8 47.887 71 35 1 45 115 7 75 7.18e-14 74.3
Msa0398810 AT5G55550.10 47.887 71 35 1 45 115 7 75 7.74e-14 74.3
Msa0398810 AT1G20880.2 42.353 85 46 2 38 121 18 100 8.01e-14 72.4
Msa0398810 AT1G20880.3 42.353 85 46 2 38 121 18 100 8.01e-14 72.4
Msa0398810 AT1G20880.1 42.353 85 46 2 38 121 18 100 8.01e-14 72.4
Msa0398810 AT3G52380.1 44.578 83 45 1 45 127 117 198 1.73e-13 72.0
Msa0398810 AT4G26650.2 43.038 79 43 1 45 123 13 89 1.80e-13 73.2
Msa0398810 AT4G26650.1 43.038 79 43 1 45 123 16 92 1.80e-13 73.2
Msa0398810 AT4G13860.2 53.333 60 28 0 60 119 2 61 2.04e-13 65.9
Msa0398810 AT1G60650.2 37.975 79 49 0 43 121 11 89 2.19e-13 71.2
Msa0398810 AT1G60650.1 37.975 79 49 0 43 121 11 89 2.19e-13 71.2
Msa0398810 AT1G22910.3 40.506 79 44 2 44 121 13 89 3.66e-13 71.2
Msa0398810 AT5G47620.1 41.333 75 41 1 43 114 5 79 4.27e-13 71.6
Msa0398810 AT5G47620.2 41.333 75 41 1 43 114 5 79 4.27e-13 71.6
Msa0398810 AT5G47620.5 41.333 75 41 1 43 114 5 79 4.27e-13 71.6
Msa0398810 AT5G47620.4 45.070 71 36 1 43 110 5 75 7.34e-13 71.2
Msa0398810 AT1G33470.2 41.026 78 43 2 44 120 7 82 8.92e-13 68.6
Msa0398810 AT1G33470.3 41.026 78 43 2 44 120 7 82 9.55e-13 68.6
Msa0398810 AT1G33470.1 41.026 78 43 2 44 120 7 82 9.94e-13 68.6
Msa0398810 AT3G20930.1 37.500 80 50 0 45 124 283 362 1.39e-12 69.7
Msa0398810 AT2G33410.1 40.506 79 45 1 45 123 7 83 2.73e-12 68.9
Msa0398810 AT2G37510.2 37.255 102 38 2 36 112 27 127 2.87e-12 65.5
Msa0398810 AT5G64200.2 42.105 76 44 0 46 121 18 93 4.81e-12 67.4
Msa0398810 AT5G64200.1 42.105 76 44 0 46 121 18 93 4.81e-12 67.4
Msa0398810 AT5G59860.1 32.710 107 67 1 16 122 43 144 6.25e-12 64.3
Msa0398810 AT2G18510.1 32.174 115 65 3 17 123 83 192 7.89e-12 67.4
Msa0398810 AT4G14300.1 40.506 79 45 1 45 123 7 83 8.95e-12 67.4
Msa0398810 AT4G14300.2 40.506 79 45 1 45 123 7 83 8.95e-12 67.4
Msa0398810 AT1G07350.3 36.842 76 48 0 42 117 43 118 1.25e-11 62.8
Msa0398810 AT1G07350.2 36.842 76 48 0 42 117 43 118 1.25e-11 62.8
Msa0398810 AT5G11412.1 38.356 73 41 1 41 109 49 121 1.55e-11 63.5
Msa0398810 AT4G39260.4 41.429 70 41 0 45 114 7 76 1.61e-11 61.6
Msa0398810 AT3G14100.1 36.364 77 49 0 46 122 146 222 1.66e-11 66.6
Msa0398810 AT1G78260.1 38.462 78 47 1 44 121 17 93 1.72e-11 65.5
Msa0398810 AT1G07350.5 36.842 76 48 0 42 117 73 148 2.46e-11 62.8
Msa0398810 AT5G19030.1 32.759 116 61 2 30 128 52 167 2.88e-11 62.8
Msa0398810 AT1G54080.1 36.364 77 49 0 46 122 150 226 2.97e-11 65.9
Msa0398810 AT1G17370.2 37.662 77 48 0 46 122 141 217 3.52e-11 65.9
Msa0398810 AT1G17370.1 37.662 77 48 0 46 122 141 217 3.78e-11 65.5
Msa0398810 AT1G78260.2 38.095 84 51 1 38 121 11 93 7.12e-11 63.5
Msa0398810 AT5G51300.1 38.462 78 48 0 43 120 479 556 9.89e-11 65.1
Msa0398810 AT5G51300.2 38.462 78 48 0 43 120 479 556 9.89e-11 65.1
Msa0398810 AT5G51300.3 38.462 78 48 0 43 120 479 556 9.89e-11 65.1

Find 193 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCTCCACCACTGTAAT+TGG 0.187885 3_2:+20809662 None:intergenic
GGAGGTGGTGGTGGATATTC+AGG 0.196213 3_2:-20810524 Msa0398810:CDS
GTAGAGTTGGGAGTTTATTA+AGG 0.262081 3_2:-20812661 Msa0398810:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.275269 3_2:-20809618 Msa0398810:CDS
CTATACCCTGTTGCACTTCC+AGG 0.289310 3_2:+20809504 None:intergenic
CCTCCTGGTGTTGGTGGTTA+TGG 0.295984 3_2:-20810302 Msa0398810:CDS
GGTTATGGCGGAGGTGGTTA+TGG 0.310693 3_2:-20810431 Msa0398810:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.311859 3_2:-20809885 Msa0398810:CDS
GCACCTGGTGTTGGTGGTTA+TGG 0.314342 3_2:-20809699 Msa0398810:CDS
CACTTCCAGGGTATTGATTA+CGG 0.314514 3_2:+20809517 None:intergenic
TATGGTGCTGCTGCTGGATT+TGG 0.314919 3_2:-20809600 Msa0398810:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.324245 3_2:-20810041 Msa0398810:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.324245 3_2:-20810128 Msa0398810:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.326706 3_2:-20809954 Msa0398810:CDS
GCTCCTGGTGTTGGTGGTTA+TGG 0.326706 3_2:-20810215 Msa0398810:CDS
GCTCCTGTTGCTGGTGTTTA+CGG 0.332135 3_2:-20809792 Msa0398810:CDS
CCAAGCCATACGGTGCTTCT+CGG 0.335689 3_2:-20812579 Msa0398810:CDS
GTTTCAGGAATGGCTTTCTT+TGG 0.341692 3_2:-20812683 Msa0398810:intron
GGTGCTAACAATGTAAATTA+TGG 0.345822 3_2:-20809768 Msa0398810:CDS
GCTCCCGGGAGCAGCTTTGC+TGG 0.358288 3_2:-20809468 Msa0398810:CDS
ACCACCACGGGGTCTTTCAT+TGG 0.359285 3_2:+20810568 None:intergenic
GGAGGCATCAAGTGCCATTC+AGG 0.360417 3_2:-20811815 Msa0398810:CDS
CAATACCCTGGAAGTGCAAC+AGG 0.364374 3_2:-20809510 Msa0398810:CDS
ACTGGTAGGTCCAAAGGATT+TGG 0.367522 3_2:-20811862 Msa0398810:CDS
TACGGTAGTGCTCCTGTTGC+TGG 0.368507 3_2:-20809801 Msa0398810:CDS
TGGCTTTCTTTGGTAGAGTT+GGG 0.369898 3_2:-20812673 Msa0398810:CDS
GGTGGTTATGGTGCTGCTGC+TGG 0.370957 3_2:-20809606 Msa0398810:CDS
GGTGGATATTCAGGTGGTTA+TGG 0.372561 3_2:-20810515 Msa0398810:CDS
TAACACCACCGGTACTATAA+TGG 0.374449 3_2:+20809565 None:intergenic
TCCTACAAACAGCTTGGTAT+TGG 0.375210 3_2:+20812550 None:intergenic
TATGGAAACAATGCAAATTA+TGG 0.382926 3_2:-20810023 Msa0398810:CDS
TATGGAAACAATGCAAATTA+TGG 0.382926 3_2:-20810110 Msa0398810:CDS
TATGGAAACAATGCAAATTA+TGG 0.382926 3_2:-20810284 Msa0398810:CDS
CCTTATGGTGGTGGAGGTGG+TGG 0.387616 3_2:-20810536 Msa0398810:CDS
TATGGTAACAATGCAAATTA+TGG 0.389746 3_2:-20810197 Msa0398810:CDS
TATGGTGGTGGAGGTGGTGG+TGG 0.394686 3_2:-20810533 Msa0398810:CDS
GAAAGCAATTCTGTTAACTA+TGG 0.395798 3_2:-20809645 Msa0398810:CDS
GAAAGCAATTCTGTTAACTA+TGG 0.398237 3_2:-20809726 Msa0398810:CDS
TATGGTAACAATGTGAATTA+TGG 0.398804 3_2:-20809936 Msa0398810:CDS
ATAATTATGGATCGCGAAAC+TGG 0.398913 3_2:-20811880 Msa0398810:CDS
CCTACAAACAGCTTGGTATT+GGG 0.403404 3_2:+20812551 None:intergenic
GGACCTTATGGTGGTGGAGG+TGG 0.405984 3_2:-20810539 Msa0398810:CDS
ATCAAGTGCCATTCAGGCCT+TGG 0.407278 3_2:-20811809 Msa0398810:CDS
ACTTCCAGGGTATTGATTAC+GGG 0.413785 3_2:+20809518 None:intergenic
GGTGGAAACGATGCAAATTA+TGG 0.422269 3_2:-20810371 Msa0398810:CDS
ATGGCTTTCTTTGGTAGAGT+TGG 0.428552 3_2:-20812674 Msa0398810:CDS
AGTAACAAAGCCAAATCCTT+TGG 0.430233 3_2:+20811852 None:intergenic
GGCTATAGTGGTAATGCTGC+TGG 0.431605 3_2:-20810455 Msa0398810:CDS
AGCTAAGAACAACAAATTCA+AGG 0.432335 3_2:-20813604 Msa0398810:intron
GGAACTACCAGTGGTGGTTA+TGG 0.436521 3_2:-20810392 Msa0398810:CDS
GGTGGTAACAGTGCAAATTA+TGG 0.437840 3_2:-20809861 Msa0398810:CDS
CCCAATACCAAGCTGTTTGT+AGG 0.444353 3_2:-20812551 Msa0398810:CDS
TTTGATGGACCTTATGGTGG+TGG 0.444397 3_2:-20810545 Msa0398810:CDS
CCACCGTAAACACCAGCAAC+AGG 0.447301 3_2:+20809789 None:intergenic
GTTAACTATGGTATTGCTCC+TGG 0.448065 3_2:-20809633 Msa0398810:CDS
TATAGTACCGGTGGTGTTAG+TGG 0.451306 3_2:-20809561 Msa0398810:CDS
CTGTCCATCCAAGGCCTGAA+TGG 0.451832 3_2:+20811801 None:intergenic
TCTTCATACGGTGGTGGGTA+TGG 0.456251 3_2:-20810488 Msa0398810:CDS
GGTAATGCTGCTGGAGGTTA+TGG 0.457740 3_2:-20810446 Msa0398810:CDS
CAAGCCATACGGTGCTTCTC+GGG 0.458672 3_2:-20812578 Msa0398810:CDS
GGCAGTGCTCCTGGTGTTGG+TGG 0.458730 3_2:-20809891 Msa0398810:CDS
GCTAACTATGGCAGTGCTCC+TGG 0.459620 3_2:-20809900 Msa0398810:CDS
AGAAGGGTTTAAGAAGCAAA+AGG 0.467595 3_2:+20813683 None:intergenic
ATAGTACCGGTGGTGTTAGT+GGG 0.469106 3_2:-20809560 Msa0398810:CDS
GCTGCTGATACTGCTAACTA+TGG 0.470068 3_2:-20809912 Msa0398810:CDS
TATGGAAACACTTACAATGA+TGG 0.470763 3_2:-20810413 Msa0398810:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_2:-20809981 Msa0398810:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_2:-20810068 Msa0398810:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_2:-20810155 Msa0398810:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_2:-20810242 Msa0398810:CDS
GAAAGCAATGCTGTTAACTA+TGG 0.472224 3_2:-20810329 Msa0398810:CDS
CCACCATAACCACCAACACC+AGG 0.472812 3_2:+20809882 None:intergenic
GGTATTGCTCCTGGTGTTGG+TGG 0.473295 3_2:-20809624 Msa0398810:CDS
ACAACTCACCGTCAAGAACT+TGG 0.473731 3_2:+20812029 None:intergenic
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_2:-20809969 Msa0398810:CDS
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_2:-20810056 Msa0398810:CDS
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_2:-20810143 Msa0398810:CDS
GTTAACTATGGTAGTGCTCC+TGG 0.474066 3_2:-20810230 Msa0398810:CDS
GGTAATGCTGCTGGCTATAG+TGG 0.474270 3_2:-20810467 Msa0398810:CDS
GATGGACCTTATGGTGGTGG+AGG 0.475314 3_2:-20810542 Msa0398810:CDS
TCCACCAGCAAAGCTGCTCC+CGG 0.475573 3_2:+20809464 None:intergenic
ATTACGGGAGAAACCATTGC+TGG 0.481459 3_2:+20809533 None:intergenic
GCTGGTGGATATGATAGAAC+TGG 0.486983 3_2:-20809450 Msa0398810:CDS
GGTGTTGGTGGTTATGGTGG+TGG 0.487083 3_2:-20809693 Msa0398810:CDS
GGTGTTGGTGGTTATGGTGG+TGG 0.487083 3_2:-20809879 Msa0398810:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_2:-20809960 Msa0398810:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_2:-20810047 Msa0398810:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_2:-20810134 Msa0398810:CDS
GGTAGTGCTCCTGGTGTTGG+TGG 0.492463 3_2:-20810221 Msa0398810:CDS
GGTAGTCCTCCTGGTGTTGG+TGG 0.492463 3_2:-20810308 Msa0398810:CDS
GCAAATTATGGTGCGGCTGT+AGG 0.493495 3_2:-20810011 Msa0398810:CDS
CCGAGAAGCACCGTATGGCT+TGG 0.494835 3_2:+20812579 None:intergenic
GTTAACTATGGTAGTCCTCC+TGG 0.498449 3_2:-20810317 Msa0398810:CDS
GCAAATTATGGTGCGGCTGT+AGG 0.498773 3_2:-20810098 Msa0398810:CDS
GCAAATTATGGTGCGGCTGT+AGG 0.498773 3_2:-20810185 Msa0398810:CDS
GCACCATAACCACCAACACC+AGG 0.502988 3_2:+20809615 None:intergenic
AGCAGTGGCAGTTCAGCTCC+CGG 0.508874 3_2:-20809483 Msa0398810:CDS
TATGGTATTGCTCCTGGTGT+TGG 0.511609 3_2:-20809627 Msa0398810:CDS
GGTAGTGCACCTGGTGTTGG+TGG 0.514951 3_2:-20809705 Msa0398810:CDS
CCCGGGAGCAGCTTTGCTGG+TGG 0.515216 3_2:-20809465 Msa0398810:CDS
CCCTTCTGCAAAATCTCGCT+AGG 0.515461 3_2:-20813667 Msa0398810:five_prime_UTR
CCACCACCTCCACCACCATA+AGG 0.516234 3_2:+20810536 None:intergenic
CGTATGGCTTGGAAAACAGA+TGG 0.517156 3_2:+20812590 None:intergenic
CATTCAGGCCTTGGATGGAC+AGG 0.517691 3_2:-20811800 Msa0398810:intron
TATGGCAGTGCTCCTGGTGT+TGG 0.518016 3_2:-20809894 Msa0398810:CDS
CCTGGTGTTGGTGGTTATGG+TGG 0.520748 3_2:-20809696 Msa0398810:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_2:-20809963 Msa0398810:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_2:-20810050 Msa0398810:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_2:-20810137 Msa0398810:CDS
TATGGTAGTGCTCCTGGTGT+TGG 0.523204 3_2:-20810224 Msa0398810:CDS
GCTGGAGGTTATGGCGGAGG+TGG 0.526799 3_2:-20810437 Msa0398810:CDS
CCTGGTGTTGGTGGTTATGG+TGG 0.529383 3_2:-20809882 Msa0398810:CDS
GAAGGGTTTAAGAAGCAAAA+GGG 0.530867 3_2:+20813684 None:intergenic
GATCTGCATGGTCGCCGAGT+TGG 0.531154 3_2:-20810602 Msa0398810:CDS
TATACCCTGTTGCACTTCCA+GGG 0.541487 3_2:+20809505 None:intergenic
GCAAATTATGGTGCTGCTGT+AGG 0.541604 3_2:-20810359 Msa0398810:CDS
TATGGTAGTCCTCCTGGTGT+TGG 0.542111 3_2:-20810311 Msa0398810:CDS
GGTAACTCTTCATACGGTGG+TGG 0.542271 3_2:-20810494 Msa0398810:CDS
GTTAACTATGGTAGTGCACC+TGG 0.543191 3_2:-20809714 Msa0398810:CDS
GGTGGGTATGGTAATGCTGC+TGG 0.545529 3_2:-20810476 Msa0398810:CDS
AGTGCCATTCAGGCCTTGGA+TGG 0.546654 3_2:-20811805 Msa0398810:CDS
AGGTCCATCAAAACCACCAC+GGG 0.547372 3_2:+20810556 None:intergenic
CGCGAAACTGGTAGGTCCAA+AGG 0.548206 3_2:-20811868 Msa0398810:CDS
CCACCAGCAAAGCTGCTCCC+GGG 0.552776 3_2:+20809465 None:intergenic
CTCACCTCCTACAAACAGCT+TGG 0.553614 3_2:+20812544 None:intergenic
GCAAATTATGGTGCGGCTGT+AGG 0.554874 3_2:-20809849 Msa0398810:CDS
GCAAATTATGGTGCTGCTGT+AGG 0.557750 3_2:-20810272 Msa0398810:CDS
TATGGTAGTGCACCTGGTGT+TGG 0.559778 3_2:-20809708 Msa0398810:CDS
TACTTACAATACTGTTGAGG+AGG 0.563819 3_2:-20811833 Msa0398810:CDS
TATGGTGCGGCTGTAGGTGG+TGG 0.566297 3_2:-20809843 Msa0398810:CDS
GCTGCTGGAGGTTATGGCGG+AGG 0.566970 3_2:-20810440 Msa0398810:CDS
GGACTTGCATACGGTGAAAG+TGG 0.567518 3_2:-20809426 Msa0398810:CDS
AGTGATAACCATTATAGTAC+CGG 0.567539 3_2:-20809573 Msa0398810:CDS
TTCTCCCGTAATCAATACCC+TGG 0.569136 3_2:-20809522 Msa0398810:CDS
CCACCATAACCACCAACACC+AGG 0.573676 3_2:+20809696 None:intergenic
AGATATGGCCAAGTTCTTGA+CGG 0.577723 3_2:-20812037 Msa0398810:intron
TAGTACCGGTGGTGTTAGTG+GGG 0.577806 3_2:-20809559 Msa0398810:CDS
TTTCCATAACCACCAACACC+AGG 0.577846 3_2:+20810038 None:intergenic
TTTCCATAACCACCAACACC+AGG 0.577846 3_2:+20810125 None:intergenic
TTTCCATAACCACCAACACC+AGG 0.577846 3_2:+20810299 None:intergenic
TGTTACTTACAATACTGTTG+AGG 0.579889 3_2:-20811836 Msa0398810:CDS
GTAAATTATGGTACTGCTGT+AGG 0.581294 3_2:-20809756 Msa0398810:CDS
GCAGTGGCAGTTCAGCTCCC+GGG 0.581433 3_2:-20809482 Msa0398810:CDS
GAAAGCAATTCTGTTAACTA+CGG 0.582061 3_2:-20809819 Msa0398810:CDS
CCTTCTGCAAAATCTCGCTA+GGG 0.582168 3_2:-20813666 Msa0398810:five_prime_UTR
GTATGGCTTGGAAAACAGAT+GGG 0.584601 3_2:+20812591 None:intergenic
TATGGTGCGGCTGTAGGCGG+TGG 0.590083 3_2:-20810092 Msa0398810:CDS
TATGGTGCGGCTGTAGGCGG+TGG 0.590083 3_2:-20810179 Msa0398810:CDS
CTGAGTTACCTGTCCATCCA+AGG 0.590534 3_2:+20811792 None:intergenic
TATGGTGCTGCTGTAGGCGG+TGG 0.593381 3_2:-20810266 Msa0398810:CDS
TATGGTGCTGCTGTAGGCGG+TGG 0.593381 3_2:-20810353 Msa0398810:CDS
GGTTATGGTAACTCTTCATA+CGG 0.593911 3_2:-20810500 Msa0398810:CDS
AATTATGGTGCGGCTGTAGG+TGG 0.596398 3_2:-20809846 Msa0398810:CDS
GGTGGTGGTGGATATTCAGG+TGG 0.605763 3_2:-20810521 Msa0398810:CDS
AACAGTGCCAATTACAGTGG+TGG 0.607861 3_2:-20809669 Msa0398810:CDS
AATACCAAGCTGTTTGTAGG+AGG 0.614431 3_2:-20812548 Msa0398810:intron
TTACGGGAGAAACCATTGCT+GGG 0.614736 3_2:+20809534 None:intergenic
TTACCATAACCACCAACACC+AGG 0.615865 3_2:+20809951 None:intergenic
TTACCATAACCACCAACACC+AGG 0.615865 3_2:+20810212 None:intergenic
TATGGTGCGGCTGTAGGCAG+TGG 0.619969 3_2:-20810005 Msa0398810:CDS
GTTTCCACCATAACCACCAC+TGG 0.622310 3_2:+20810385 None:intergenic
AATTATGGTGCGGCTGTAGG+CGG 0.623218 3_2:-20810095 Msa0398810:CDS
AATTATGGTGCGGCTGTAGG+CGG 0.623218 3_2:-20810182 Msa0398810:CDS
TTATGGATCGCGAAACTGGT+AGG 0.623605 3_2:-20811876 Msa0398810:CDS
ACTACCAGTGGTGGTTATGG+TGG 0.626441 3_2:-20810389 Msa0398810:CDS
AGAACTGGAGGACTTGCATA+CGG 0.628647 3_2:-20809435 Msa0398810:CDS
TGGCAAAATTTACACCAACT+CGG 0.629242 3_2:+20810588 None:intergenic
AGTACCCGAGAAGCACCGTA+TGG 0.630479 3_2:+20812574 None:intergenic
TACAATGATGGAACTACCAG+TGG 0.633369 3_2:-20810401 Msa0398810:CDS
AATGCTGCTGGAGGTTATGG+CGG 0.635356 3_2:-20810443 Msa0398810:CDS
GTAACTCTTCATACGGTGGT+GGG 0.644863 3_2:-20810493 Msa0398810:CDS
AATTATGGTGCTGCTGTAGG+CGG 0.652021 3_2:-20810269 Msa0398810:CDS
AATTATGGTGCTGCTGTAGG+CGG 0.652021 3_2:-20810356 Msa0398810:CDS
AATGATGGAACTACCAGTGG+TGG 0.655253 3_2:-20810398 Msa0398810:CDS
CCTGTTGCTGGTGTTTACGG+TGG 0.660993 3_2:-20809789 Msa0398810:CDS
GCCAATGAAAGACCCCGTGG+TGG 0.663368 3_2:-20810569 Msa0398810:CDS
GATAACCATTATAGTACCGG+TGG 0.664559 3_2:-20809570 Msa0398810:CDS
AGTGCAACAGGGTATAGCAG+TGG 0.673542 3_2:-20809498 Msa0398810:CDS
AGTACCGGTGGTGTTAGTGG+GGG 0.679560 3_2:-20809558 Msa0398810:CDS
GGTGGATATGATAGAACTGG+AGG 0.686015 3_2:-20809447 Msa0398810:CDS
TATGGTAACTCTTCATACGG+TGG 0.686177 3_2:-20810497 Msa0398810:CDS
AAGGTCCATCAAAACCACCA+CGG 0.693888 3_2:+20810555 None:intergenic
TATGGCTTGGAAAACAGATG+GGG 0.700345 3_2:+20812592 None:intergenic
CCATAACCACCAACACCAGG+AGG 0.710651 3_2:+20810302 None:intergenic
AATACCCTGGAAGTGCAACA+GGG 0.711945 3_2:-20809509 Msa0398810:CDS
TTTGCCAATGAAAGACCCCG+TGG 0.723240 3_2:-20810572 Msa0398810:CDS
TATAGTGGTAATGCTGCTGG+AGG 0.728658 3_2:-20810452 Msa0398810:CDS
AAACAATGCAAATTATGGTG+CGG 0.743182 3_2:-20810018 Msa0398810:CDS
AAACAATGCAAATTATGGTG+CGG 0.743182 3_2:-20810105 Msa0398810:CDS
GGTAACAGTGCCAATTACAG+TGG 0.753278 3_2:-20809672 Msa0398810:CDS
TAACAGTGCAAATTATGGTG+CGG 0.758913 3_2:-20809856 Msa0398810:CDS
TAACAATGCAAATTATGGTG+CGG 0.761526 3_2:-20810192 Msa0398810:CDS
GGTCCATCAAAACCACCACG+GGG 0.809353 3_2:+20810557 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCGATTTTTTTATTTTATT+AGG - chr3_2:20810252-20810271 Msa0398810:CDS 10.0%
!!! TTTTTCATATATATATTGAA+AGG - chr3_2:20810607-20810626 Msa0398810:intron 10.0%
!!! TTTTCATATATATATTGAAA+GGG - chr3_2:20810608-20810627 Msa0398810:intron 10.0%
!!! TTTCATTCATTTTTTCTTTT+GGG + chr3_2:20809633-20809652 None:intergenic 15.0%
!!! TTTTCATTCATTTTTTCTTT+TGG + chr3_2:20809634-20809653 None:intergenic 15.0%
!!! TTTGTTTATATTTTCTTTTC+TGG - chr3_2:20809690-20809709 Msa0398810:CDS 15.0%
!!! TTGTTTATATTTTCTTTTCT+GGG - chr3_2:20809691-20809710 Msa0398810:CDS 15.0%
!! ATACTTCATGTTAATTTAAT+TGG - chr3_2:20812391-20812410 Msa0398810:intron 15.0%
!! CATTCATAAATAAATAAGAA+AGG + chr3_2:20812447-20812466 None:intergenic 15.0%
!! ACAAGAAATGAAAAAAAGAT+TGG + chr3_2:20809522-20809541 None:intergenic 20.0%
!!! TGTTTATATTTTCTTTTCTG+GGG - chr3_2:20809692-20809711 Msa0398810:CDS 20.0%
!! GAACAAATATAACGAAAAAT+GGG + chr3_2:20810072-20810091 None:intergenic 20.0%
!! AGAACAAATATAACGAAAAA+TGG + chr3_2:20810073-20810092 None:intergenic 20.0%
!! CAAAGACAAAATTAAAGTAA+TGG + chr3_2:20810096-20810115 None:intergenic 20.0%
!! ATCATAATTATTACTCTTTC+TGG - chr3_2:20810116-20810135 Msa0398810:CDS 20.0%
!! GAAAAAGTTATTATTATCGA+AGG + chr3_2:20810216-20810235 None:intergenic 20.0%
!!! TAATAATAACTTTTTCCTTC+AGG - chr3_2:20810220-20810239 Msa0398810:CDS 20.0%
!!! AATAATAACTTTTTCCTTCA+GGG - chr3_2:20810221-20810240 Msa0398810:CDS 20.0%
!!! ATTTTGTTTGTATTTCTTTC+TGG - chr3_2:20810285-20810304 Msa0398810:CDS 20.0%
!! AAATTATTTATCAGTGTCTA+CGG + chr3_2:20810716-20810735 None:intergenic 20.0%
!!! TTTTATAGCAAGGATAATTA+TGG - chr3_2:20811192-20811211 Msa0398810:intron 20.0%
!! TCCACTATGATTAATTATAT+AGG + chr3_2:20812122-20812141 None:intergenic 20.0%
!! GATATTCTCTTTATCTATTA+TGG + chr3_2:20812147-20812166 None:intergenic 20.0%
!!! TGAATGTAATTTTTGTTTTC+AGG - chr3_2:20812461-20812480 Msa0398810:intron 20.0%
! AGAAATGAAAAAAAGATTGG+TGG + chr3_2:20809519-20809538 None:intergenic 25.0%
!!! TTTGGTTTTATTGATGTTTG+TGG - chr3_2:20809726-20809745 Msa0398810:CDS 25.0%
!!! TTGGTTTTATTGATGTTTGT+GGG - chr3_2:20809727-20809746 Msa0398810:CDS 25.0%
! ACGAAAATGAGGAAATAATT+TGG - chr3_2:20809997-20810016 Msa0398810:CDS 25.0%
! AATATAACGAAAAATGGGAA+TGG + chr3_2:20810067-20810086 None:intergenic 25.0%
! TATTGTATTCTGAATGTGAT+AGG - chr3_2:20810380-20810399 Msa0398810:CDS 25.0%
! AATTATTTATCAGTGTCTAC+GGG + chr3_2:20810715-20810734 None:intergenic 25.0%
! TTGAATGTAACTATATGTGT+TGG - chr3_2:20810752-20810771 Msa0398810:intron 25.0%
! ATTTCTTGTAAAACTACGAT+AGG - chr3_2:20810851-20810870 Msa0398810:intron 25.0%
! TGCTATGATAAATCCATATT+GGG - chr3_2:20810876-20810895 Msa0398810:intron 25.0%
!!! ATCTCATTGTTTTTATAGCA+AGG - chr3_2:20811182-20811201 Msa0398810:intron 25.0%
!! TCTCTAGTGTGTATTTATTT+TGG - chr3_2:20811445-20811464 Msa0398810:intron 25.0%
! TGGGATTCATTATAGTTAAT+CGG + chr3_2:20811506-20811525 None:intergenic 25.0%
! AATGTTCAATGGAATCAATT+GGG + chr3_2:20811525-20811544 None:intergenic 25.0%
! AAAGTTGACAAAAAAAGAAG+TGG + chr3_2:20811569-20811588 None:intergenic 25.0%
! ATAAGATTCGATTCACAATT+TGG - chr3_2:20811700-20811719 Msa0398810:intron 25.0%
! TGCTACATTCAATATTAGTT+TGG - chr3_2:20811962-20811981 Msa0398810:intron 25.0%
!! GCTACATTCAATATTAGTTT+GGG - chr3_2:20811963-20811982 Msa0398810:intron 25.0%
! TTAATTATATAGGCAGTACT+GGG + chr3_2:20812112-20812131 None:intergenic 25.0%
! ATTAATTATATAGGCAGTAC+TGG + chr3_2:20812113-20812132 None:intergenic 25.0%
! GCCTATATAATTAATCATAG+TGG - chr3_2:20812118-20812137 Msa0398810:intron 25.0%
! TTATTGTTCCTTCATTTGAT+AGG - chr3_2:20812195-20812214 Msa0398810:intron 25.0%
!!! CTGATAATGACAATTTTAAC+TGG + chr3_2:20812251-20812270 None:intergenic 25.0%
! CAGTTAAAATTGTCATTATC+AGG - chr3_2:20812249-20812268 Msa0398810:intron 25.0%
! AAAAAAGTTTGTAAGATGAC+AGG + chr3_2:20812369-20812388 None:intergenic 25.0%
! TTAATTGGCATTTGTAACAA+CGG - chr3_2:20812406-20812425 Msa0398810:intron 25.0%
! TATGGAAACAATGCAAATTA+TGG - chr3_2:20812801-20812820 Msa0398810:intron 25.0%
! TATGGTAACAATGCAAATTA+TGG - chr3_2:20812888-20812907 Msa0398810:intron 25.0%
! TATGGAAACAATGCAAATTA+TGG - chr3_2:20812801-20812820 Msa0398810:intron 25.0%
! TATGGAAACAATGCAAATTA+TGG - chr3_2:20812801-20812820 Msa0398810:intron 25.0%
! TATGGTAACAATGTGAATTA+TGG - chr3_2:20813149-20813168 Msa0398810:intron 25.0%
AGCTAAGAACAACAAATTCA+AGG - chr3_2:20809481-20809500 Msa0398810:CDS 30.0%
AATCACTGACACTTCAAAAA+CGG - chr3_2:20809797-20809816 Msa0398810:CDS 30.0%
!!! AGCTGAATGAGTTTTTTCAT+TGG - chr3_2:20809954-20809973 Msa0398810:CDS 30.0%
ATTGAACTCTACGTTATCAA+TGG - chr3_2:20810031-20810050 Msa0398810:CDS 30.0%
!!! CATTTTTTATCCACTCTTTC+TGG + chr3_2:20810156-20810175 None:intergenic 30.0%
CGAAGGCAAAATTAAAGTAA+TGG + chr3_2:20810199-20810218 None:intergenic 30.0%
!! ATTCTGCTTTTACTGATGTT+TGG - chr3_2:20810319-20810338 Msa0398810:CDS 30.0%
!! TTCTGCTTTTACTGATGTTT+GGG - chr3_2:20810320-20810339 Msa0398810:CDS 30.0%
ATTCAAATTGAAGACGTGTT+TGG + chr3_2:20810804-20810823 None:intergenic 30.0%
CTGCTATGATAAATCCATAT+TGG - chr3_2:20810875-20810894 Msa0398810:intron 30.0%
! TGTTTTCTTTTTCCCTTCTA+GGG - chr3_2:20811088-20811107 Msa0398810:intron 30.0%
! TGTTACTTACAATACTGTTG+AGG - chr3_2:20811249-20811268 Msa0398810:intron 30.0%
TATACATACGAGTTGTATCT+CGG - chr3_2:20811390-20811409 Msa0398810:intron 30.0%
GGGATTCATTATAGTTAATC+GGG + chr3_2:20811505-20811524 None:intergenic 30.0%
CAATGTTCAATGGAATCAAT+TGG + chr3_2:20811526-20811545 None:intergenic 30.0%
TAAGCTTACACAATGTTCAA+TGG + chr3_2:20811536-20811555 None:intergenic 30.0%
TTGAGAAACATATCGTGAAT+CGG + chr3_2:20811739-20811758 None:intergenic 30.0%
AGCATTTGTATATGTGTACA+TGG + chr3_2:20811770-20811789 None:intergenic 30.0%
TACAAATGCTGAAACTACAT+AGG - chr3_2:20811780-20811799 Msa0398810:intron 30.0%
CTCGACAATTATAAGGAAAA+GGG + chr3_2:20811910-20811929 None:intergenic 30.0%
GTAAAAGCTCGACAATTATA+AGG + chr3_2:20811917-20811936 None:intergenic 30.0%
TATGGAAACACTTACAATGA+TGG - chr3_2:20812672-20812691 Msa0398810:CDS 30.0%
TAACAATGCAAATTATGGTG+CGG - chr3_2:20812893-20812912 Msa0398810:intron 30.0%
AAACAATGCAAATTATGGTG+CGG - chr3_2:20812806-20812825 Msa0398810:intron 30.0%
AAACAATGCAAATTATGGTG+CGG - chr3_2:20812806-20812825 Msa0398810:intron 30.0%
GAAAGCAATTCTGTTAACTA+CGG - chr3_2:20813266-20813285 Msa0398810:intron 30.0%
GGTGCTAACAATGTAAATTA+TGG - chr3_2:20813317-20813336 Msa0398810:intron 30.0%
GAAAGCAATTCTGTTAACTA+TGG - chr3_2:20813266-20813285 Msa0398810:intron 30.0%
GAAAGCAATTCTGTTAACTA+TGG - chr3_2:20813266-20813285 Msa0398810:intron 30.0%
AGTGATAACCATTATAGTAC+CGG - chr3_2:20813512-20813531 Msa0398810:intron 30.0%
!!! AAGTTGATGCTTTTGCTAAA+CGG - chr3_2:20813711-20813730 Msa0398810:five_prime_UTR 30.0%
GAAGGGTTTAAGAAGCAAAA+GGG + chr3_2:20809404-20809423 None:intergenic 35.0%
AGAAGGGTTTAAGAAGCAAA+AGG + chr3_2:20809405-20809424 None:intergenic 35.0%
TGGATCAAGATTCTTTCCAT+TGG - chr3_2:20809974-20809993 Msa0398810:CDS 35.0%
! ATTTCCTCATTTTCGTCCAA+TGG + chr3_2:20809993-20810012 None:intergenic 35.0%
!!! ACTCTTTCTGGTTTTGTTTG+GGG + chr3_2:20810144-20810163 None:intergenic 35.0%
!!! CACTCTTTCTGGTTTTGTTT+GGG + chr3_2:20810145-20810164 None:intergenic 35.0%
TTCTGAATGTGATAGGTTTC+AGG - chr3_2:20810387-20810406 Msa0398810:CDS 35.0%
AATGTGATAGGTTTCAGGAA+TGG - chr3_2:20810392-20810411 Msa0398810:CDS 35.0%
GTAGAGTTGGGAGTTTATTA+AGG - chr3_2:20810424-20810443 Msa0398810:CDS 35.0%
ATATTGAAAGGGACCTTTGT+TGG - chr3_2:20810619-20810638 Msa0398810:intron 35.0%
TATTGAAAGGGACCTTTGTT+GGG - chr3_2:20810620-20810639 Msa0398810:intron 35.0%
ACGTCTTCAATTTGAATTGC+CGG - chr3_2:20810807-20810826 Msa0398810:intron 35.0%
ATAAAGATCCTATCTTGGCA+TGG + chr3_2:20810924-20810943 None:intergenic 35.0%
ATGCCAAGATAGGATCTTTA+TGG - chr3_2:20810923-20810942 Msa0398810:intron 35.0%
CAACCATAAAGATCCTATCT+TGG + chr3_2:20810929-20810948 None:intergenic 35.0%
ATGCAAATTCATGTGTTTGC+AGG - chr3_2:20810979-20810998 Msa0398810:intron 35.0%
!!! AGCGATGCTTTTTCAAGATA+TGG - chr3_2:20811033-20811052 Msa0398810:intron 35.0%
! CTGTTTTCTTTTTCCCTTCT+AGG - chr3_2:20811087-20811106 Msa0398810:intron 35.0%
! GTTTTCTTTTTCCCTTCTAG+GGG - chr3_2:20811089-20811108 Msa0398810:intron 35.0%
! TTTTCTTTTTCCCTTCTAGG+GGG - chr3_2:20811090-20811109 Msa0398810:intron 35.0%
ATAATTATGGATCGCGAAAC+TGG - chr3_2:20811205-20811224 Msa0398810:intron 35.0%
AGTAACAAAGCCAAATCCTT+TGG + chr3_2:20811236-20811255 None:intergenic 35.0%
TACTTACAATACTGTTGAGG+AGG - chr3_2:20811252-20811271 Msa0398810:intron 35.0%
TGTACGTGTATGCAATCATT+CGG + chr3_2:20811352-20811371 None:intergenic 35.0%
GCTCGACAATTATAAGGAAA+AGG + chr3_2:20811911-20811930 None:intergenic 35.0%
ACTTATGTGTCTAATCATCC+AGG - chr3_2:20811935-20811954 Msa0398810:intron 35.0%
TATTGAATGTAGCAGTAACC+TGG + chr3_2:20811956-20811975 None:intergenic 35.0%
!!! AATTTTAACTGGAGACCACA+TGG + chr3_2:20812240-20812259 None:intergenic 35.0%
CATCACAGTTAAGTTACTGA+AGG + chr3_2:20812314-20812333 None:intergenic 35.0%
!!! TTTTGTTTTCAGGATCTGCA+TGG - chr3_2:20812471-20812490 Msa0398810:intron 35.0%
TGGCAAAATTTACACCAACT+CGG + chr3_2:20812500-20812519 None:intergenic 35.0%
GGTTATGGTAACTCTTCATA+CGG - chr3_2:20812585-20812604 Msa0398810:CDS 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_2:20812756-20812775 Msa0398810:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_2:20812756-20812775 Msa0398810:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_2:20812756-20812775 Msa0398810:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_2:20812756-20812775 Msa0398810:intron 35.0%
GAAAGCAATGCTGTTAACTA+TGG - chr3_2:20812756-20812775 Msa0398810:intron 35.0%
TAACAGTGCAAATTATGGTG+CGG - chr3_2:20813229-20813248 Msa0398810:intron 35.0%
GTAAATTATGGTACTGCTGT+AGG - chr3_2:20813329-20813348 Msa0398810:intron 35.0%
!! AGTTGATGCTTTTGCTAAAC+GGG - chr3_2:20813712-20813731 Msa0398810:five_prime_UTR 35.0%
!!! ATTTTCTTTTCTGGGGTGTG+CGG - chr3_2:20809699-20809718 Msa0398810:CDS 40.0%
CTTTCCATTGGACGAAAATG+AGG - chr3_2:20809986-20810005 Msa0398810:CDS 40.0%
!!! CCACTCTTTCTGGTTTTGTT+TGG + chr3_2:20810146-20810165 None:intergenic 40.0%
CCAAACAAAACCAGAAAGAG+TGG - chr3_2:20810143-20810162 Msa0398810:CDS 40.0%
ATCGAACATTTCATCCCTGA+AGG + chr3_2:20810238-20810257 None:intergenic 40.0%
! TGCTTTTACTGATGTTTGGG+CGG - chr3_2:20810323-20810342 Msa0398810:CDS 40.0%
GTTTCAGGAATGGCTTTCTT+TGG - chr3_2:20810402-20810421 Msa0398810:CDS 40.0%
ATGGCTTTCTTTGGTAGAGT+TGG - chr3_2:20810411-20810430 Msa0398810:CDS 40.0%
TGGCTTTCTTTGGTAGAGTT+GGG - chr3_2:20810412-20810431 Msa0398810:CDS 40.0%
! TATGGCTTGGAAAACAGATG+GGG + chr3_2:20810496-20810515 None:intergenic 40.0%
! GTATGGCTTGGAAAACAGAT+GGG + chr3_2:20810497-20810516 None:intergenic 40.0%
! CATCTGTTTTCCAAGCCATA+CGG - chr3_2:20810496-20810515 Msa0398810:CDS 40.0%
CCTACAAACAGCTTGGTATT+GGG + chr3_2:20810537-20810556 None:intergenic 40.0%
TCCTACAAACAGCTTGGTAT+TGG + chr3_2:20810538-20810557 None:intergenic 40.0%
AATACCAAGCTGTTTGTAGG+AGG - chr3_2:20810537-20810556 Msa0398810:CDS 40.0%
ATTGAAAGGGACCTTTGTTG+GGG - chr3_2:20810621-20810640 Msa0398810:intron 40.0%
!! TTGAAGACGTGTTTGGTGTT+TGG + chr3_2:20810797-20810816 None:intergenic 40.0%
AGATATGGCCAAGTTCTTGA+CGG - chr3_2:20811048-20811067 Msa0398810:intron 40.0%
!! TTTCTTTTTCCCTTCTAGGG+GGG - chr3_2:20811091-20811110 Msa0398810:intron 40.0%
AGCTCACAAGCTTCATTCAA+TGG + chr3_2:20811810-20811829 None:intergenic 40.0%
AATAACAGCATGCAACGACA+AGG + chr3_2:20812180-20812199 None:intergenic 40.0%
CAGATGAGCCTATCAAATGA+AGG + chr3_2:20812206-20812225 None:intergenic 40.0%
TCTGTGAGAAGATATCCATG+TGG - chr3_2:20812222-20812241 Msa0398810:intron 40.0%
TATGGTAACTCTTCATACGG+TGG - chr3_2:20812588-20812607 Msa0398810:CDS 40.0%
! TACAATGATGGAACTACCAG+TGG - chr3_2:20812684-20812703 Msa0398810:intron 40.0%
GGTGGAAACGATGCAAATTA+TGG - chr3_2:20812714-20812733 Msa0398810:intron 40.0%
GGTGGTAACAGTGCAAATTA+TGG - chr3_2:20813224-20813243 Msa0398810:intron 40.0%
GTTAACTATGGTATTGCTCC+TGG - chr3_2:20813452-20813471 Msa0398810:intron 40.0%
! GATAACCATTATAGTACCGG+TGG - chr3_2:20813515-20813534 Msa0398810:intron 40.0%
TAACACCACCGGTACTATAA+TGG + chr3_2:20813523-20813542 None:intergenic 40.0%
!! ACTTCCAGGGTATTGATTAC+GGG + chr3_2:20813570-20813589 None:intergenic 40.0%
!! CACTTCCAGGGTATTGATTA+CGG + chr3_2:20813571-20813590 None:intergenic 40.0%
! CCTAGCGAGATTTTGCAGAA+GGG + chr3_2:20809421-20809440 None:intergenic 45.0%
CCTTCTGCAAAATCTCGCTA+GGG - chr3_2:20809419-20809438 Msa0398810:CDS 45.0%
! ACACCTTTGATCAGAGGTGT+TGG - chr3_2:20809894-20809913 Msa0398810:CDS 45.0%
! GCTTTTACTGATGTTTGGGC+GGG - chr3_2:20810324-20810343 Msa0398810:CDS 45.0%
! CGTATGGCTTGGAAAACAGA+TGG + chr3_2:20810498-20810517 None:intergenic 45.0%
CCCAATACCAAGCTGTTTGT+AGG - chr3_2:20810534-20810553 Msa0398810:CDS 45.0%
TTGAAAGGGACCTTTGTTGG+GGG - chr3_2:20810622-20810641 Msa0398810:intron 45.0%
ACTACACAGCTATGTAGCAC+CGG + chr3_2:20810829-20810848 None:intergenic 45.0%
AAACAGGGGCAAACCCAATA+TGG + chr3_2:20810892-20810911 None:intergenic 45.0%
! CATGGCAGGGTTTAAAACAG+GGG + chr3_2:20810906-20810925 None:intergenic 45.0%
! GCATGGCAGGGTTTAAAACA+GGG + chr3_2:20810907-20810926 None:intergenic 45.0%
ACAACTCACCGTCAAGAACT+TGG + chr3_2:20811059-20811078 None:intergenic 45.0%
TTATGGATCGCGAAACTGGT+AGG - chr3_2:20811209-20811228 Msa0398810:intron 45.0%
ACTGGTAGGTCCAAAGGATT+TGG - chr3_2:20811223-20811242 Msa0398810:intron 45.0%
AAGGTCCATCAAAACCACCA+CGG + chr3_2:20812533-20812552 None:intergenic 45.0%
!!! GGTGGTTTTGATGGACCTTA+TGG - chr3_2:20812534-20812553 Msa0398810:intron 45.0%
!! GGTTTTGATGGACCTTATGG+TGG - chr3_2:20812537-20812556 Msa0398810:intron 45.0%
! TTTGATGGACCTTATGGTGG+TGG - chr3_2:20812540-20812559 Msa0398810:intron 45.0%
GGTGGATATTCAGGTGGTTA+TGG - chr3_2:20812570-20812589 Msa0398810:CDS 45.0%
GTAACTCTTCATACGGTGGT+GGG - chr3_2:20812592-20812611 Msa0398810:CDS 45.0%
! TATAGTGGTAATGCTGCTGG+AGG - chr3_2:20812633-20812652 Msa0398810:CDS 45.0%
! AATGATGGAACTACCAGTGG+TGG - chr3_2:20812687-20812706 Msa0398810:intron 45.0%
!! GCAAATTATGGTGCTGCTGT+AGG - chr3_2:20812726-20812745 Msa0398810:intron 45.0%
!! AATTATGGTGCTGCTGTAGG+CGG - chr3_2:20812729-20812748 Msa0398810:intron 45.0%
GTTAACTATGGTAGTCCTCC+TGG - chr3_2:20812768-20812787 Msa0398810:intron 45.0%
TTTCCATAACCACCAACACC+AGG + chr3_2:20812789-20812808 None:intergenic 45.0%
!! GCAAATTATGGTGCTGCTGT+AGG - chr3_2:20812726-20812745 Msa0398810:intron 45.0%
!! AATTATGGTGCTGCTGTAGG+CGG - chr3_2:20812729-20812748 Msa0398810:intron 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_2:20812855-20812874 Msa0398810:intron 45.0%
TTACCATAACCACCAACACC+AGG + chr3_2:20812876-20812895 None:intergenic 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_2:20812855-20812874 Msa0398810:intron 45.0%
TTTCCATAACCACCAACACC+AGG + chr3_2:20812789-20812808 None:intergenic 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_2:20812855-20812874 Msa0398810:intron 45.0%
TTTCCATAACCACCAACACC+AGG + chr3_2:20812789-20812808 None:intergenic 45.0%
! GTTAACTATGGTAGTGCTCC+TGG - chr3_2:20812855-20812874 Msa0398810:intron 45.0%
TTACCATAACCACCAACACC+AGG + chr3_2:20812876-20812895 None:intergenic 45.0%
GCTGCTGATACTGCTAACTA+TGG - chr3_2:20813173-20813192 Msa0398810:intron 45.0%
! GTTAACTATGGTAGTGCACC+TGG - chr3_2:20813371-20813390 Msa0398810:intron 45.0%
GGTAACAGTGCCAATTACAG+TGG - chr3_2:20813413-20813432 Msa0398810:intron 45.0%
AACAGTGCCAATTACAGTGG+TGG - chr3_2:20813416-20813435 Msa0398810:intron 45.0%
GCTTTCTCCACCACTGTAAT+TGG + chr3_2:20813426-20813445 None:intergenic 45.0%
TATGGTATTGCTCCTGGTGT+TGG - chr3_2:20813458-20813477 Msa0398810:intron 45.0%
!! TATAGTACCGGTGGTGTTAG+TGG - chr3_2:20813524-20813543 Msa0398810:intron 45.0%
!! ATAGTACCGGTGGTGTTAGT+GGG - chr3_2:20813525-20813544 Msa0398810:intron 45.0%
TTACGGGAGAAACCATTGCT+GGG + chr3_2:20813554-20813573 None:intergenic 45.0%
ATTACGGGAGAAACCATTGC+TGG + chr3_2:20813555-20813574 None:intergenic 45.0%
TTCTCCCGTAATCAATACCC+TGG - chr3_2:20813563-20813582 Msa0398810:intron 45.0%
! AATACCCTGGAAGTGCAACA+GGG - chr3_2:20813576-20813595 Msa0398810:intron 45.0%
TATACCCTGTTGCACTTCCA+GGG + chr3_2:20813583-20813602 None:intergenic 45.0%
! GCTGGTGGATATGATAGAAC+TGG - chr3_2:20813635-20813654 Msa0398810:five_prime_UTR 45.0%
GGTGGATATGATAGAACTGG+AGG - chr3_2:20813638-20813657 Msa0398810:five_prime_UTR 45.0%
AGAACTGGAGGACTTGCATA+CGG - chr3_2:20813650-20813669 Msa0398810:five_prime_UTR 45.0%
!! AAAAAAATGAATTAATTAAA+TGG - chr3_2:20809837-20809856 Msa0398810:CDS 5.0%
!! TTAAATAATTAATCATTATA+TGG - chr3_2:20812059-20812078 Msa0398810:CDS 5.0%
CCCTTCTGCAAAATCTCGCT+AGG - chr3_2:20809418-20809437 Msa0398810:CDS 50.0%
! CCCTAGCGAGATTTTGCAGA+AGG + chr3_2:20809422-20809441 None:intergenic 50.0%
! TCTGGGGTGTGCGGAAAATT+TGG - chr3_2:20809708-20809727 Msa0398810:CDS 50.0%
TCACATGTGTTGTGTCGTGC+CGG - chr3_2:20809862-20809881 Msa0398810:CDS 50.0%
! TCAAAGGTGTGTCCAGTGTC+CGG + chr3_2:20809884-20809903 None:intergenic 50.0%
CTGGACACACCTTTGATCAG+AGG - chr3_2:20809888-20809907 Msa0398810:CDS 50.0%
GCACCAACACCTCTGATCAA+AGG + chr3_2:20809900-20809919 None:intergenic 50.0%
CTCACCTCCTACAAACAGCT+TGG + chr3_2:20810544-20810563 None:intergenic 50.0%
ACTGTGAGAACCCCCAACAA+AGG + chr3_2:20810635-20810654 None:intergenic 50.0%
GCAACGCATTCACCAGACAT+TGG - chr3_2:20810683-20810702 Msa0398810:intron 50.0%
!! TACGGGTTAGTGCCAATGTC+TGG + chr3_2:20810698-20810717 None:intergenic 50.0%
! GGCATGGCAGGGTTTAAAAC+AGG + chr3_2:20810908-20810927 None:intergenic 50.0%
AAACCCTGCCATGCCAAGAT+AGG - chr3_2:20810913-20810932 Msa0398810:intron 50.0%
GATCCTATCTTGGCATGGCA+GGG + chr3_2:20810919-20810938 None:intergenic 50.0%
AGATCCTATCTTGGCATGGC+AGG + chr3_2:20810920-20810939 None:intergenic 50.0%
CAACTGAATCCCCCCTAGAA+GGG + chr3_2:20811103-20811122 None:intergenic 50.0%
TCAACTGAATCCCCCCTAGA+AGG + chr3_2:20811104-20811123 None:intergenic 50.0%
! ATCAAGTGCCATTCAGGCCT+TGG - chr3_2:20811276-20811295 Msa0398810:intron 50.0%
CTGAGTTACCTGTCCATCCA+AGG + chr3_2:20811296-20811315 None:intergenic 50.0%
GCATGCAACGACAAGGATGA+TGG + chr3_2:20812173-20812192 None:intergenic 50.0%
TTTGCCAATGAAAGACCCCG+TGG - chr3_2:20812513-20812532 Msa0398810:intron 50.0%
AGGTCCATCAAAACCACCAC+GGG + chr3_2:20812532-20812551 None:intergenic 50.0%
GGTAACTCTTCATACGGTGG+TGG - chr3_2:20812591-20812610 Msa0398810:CDS 50.0%
!! TCTTCATACGGTGGTGGGTA+TGG - chr3_2:20812597-20812616 Msa0398810:CDS 50.0%
! GGTAATGCTGCTGGCTATAG+TGG - chr3_2:20812618-20812637 Msa0398810:CDS 50.0%
! GGCTATAGTGGTAATGCTGC+TGG - chr3_2:20812630-20812649 Msa0398810:CDS 50.0%
GGTAATGCTGCTGGAGGTTA+TGG - chr3_2:20812639-20812658 Msa0398810:CDS 50.0%
AATGCTGCTGGAGGTTATGG+CGG - chr3_2:20812642-20812661 Msa0398810:CDS 50.0%
GGAACTACCAGTGGTGGTTA+TGG - chr3_2:20812693-20812712 Msa0398810:intron 50.0%
ACTACCAGTGGTGGTTATGG+TGG - chr3_2:20812696-20812715 Msa0398810:intron 50.0%
GTTTCCACCATAACCACCAC+TGG + chr3_2:20812703-20812722 None:intergenic 50.0%
TATGGTAGTCCTCCTGGTGT+TGG - chr3_2:20812774-20812793 Msa0398810:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_2:20812861-20812880 Msa0398810:intron 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_2:20812900-20812919 Msa0398810:intron 50.0%
AATTATGGTGCGGCTGTAGG+CGG - chr3_2:20812903-20812922 Msa0398810:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_2:20812861-20812880 Msa0398810:intron 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_2:20812900-20812919 Msa0398810:intron 50.0%
AATTATGGTGCGGCTGTAGG+CGG - chr3_2:20812903-20812922 Msa0398810:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_2:20812861-20812880 Msa0398810:intron 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_2:20812900-20812919 Msa0398810:intron 50.0%
! TATGGTAGTGCTCCTGGTGT+TGG - chr3_2:20812861-20812880 Msa0398810:intron 50.0%
GCAAATTATGGTGCGGCTGT+AGG - chr3_2:20812900-20812919 Msa0398810:intron 50.0%
AATTATGGTGCGGCTGTAGG+TGG - chr3_2:20812903-20812922 Msa0398810:intron 50.0%
GCTCCTGTTGCTGGTGTTTA+CGG - chr3_2:20813293-20813312 Msa0398810:intron 50.0%
! TATGGTAGTGCACCTGGTGT+TGG - chr3_2:20813377-20813396 Msa0398810:intron 50.0%
!! TATGGTGCTGCTGCTGGATT+TGG - chr3_2:20813485-20813504 Msa0398810:intron 50.0%
!! TAGTACCGGTGGTGTTAGTG+GGG - chr3_2:20813526-20813545 Msa0398810:intron 50.0%
! CAATACCCTGGAAGTGCAAC+AGG - chr3_2:20813575-20813594 Msa0398810:intron 50.0%
CTATACCCTGTTGCACTTCC+AGG + chr3_2:20813584-20813603 None:intergenic 50.0%
AGTGCAACAGGGTATAGCAG+TGG - chr3_2:20813587-20813606 Msa0398810:intron 50.0%
GGACTTGCATACGGTGAAAG+TGG - chr3_2:20813659-20813678 Msa0398810:five_prime_UTR 50.0%
!! CAGAGGTGTTGGTGCTGTAG+AGG - chr3_2:20809905-20809924 Msa0398810:CDS 55.0%
CCAAGCCATACGGTGCTTCT+CGG - chr3_2:20810506-20810525 Msa0398810:CDS 55.0%
CAAGCCATACGGTGCTTCTC+GGG - chr3_2:20810507-20810526 Msa0398810:CDS 55.0%
!! AGTACCCGAGAAGCACCGTA+TGG + chr3_2:20810514-20810533 None:intergenic 55.0%
GTCTGGTGAATGCGTTGCGT+CGG + chr3_2:20810681-20810700 None:intergenic 55.0%
CTAGGGGGGATTCAGTTGAG+AGG - chr3_2:20811105-20811124 Msa0398810:intron 55.0%
CGCGAAACTGGTAGGTCCAA+AGG - chr3_2:20811217-20811236 Msa0398810:intron 55.0%
!! GGAGGCATCAAGTGCCATTC+AGG - chr3_2:20811270-20811289 Msa0398810:intron 55.0%
! AGTGCCATTCAGGCCTTGGA+TGG - chr3_2:20811280-20811299 Msa0398810:intron 55.0%
CTGTCCATCCAAGGCCTGAA+TGG + chr3_2:20811287-20811306 None:intergenic 55.0%
CATTCAGGCCTTGGATGGAC+AGG - chr3_2:20811285-20811304 Msa0398810:intron 55.0%
ACCACCACGGGGTCTTTCAT+TGG + chr3_2:20812520-20812539 None:intergenic 55.0%
!!! AGACCCCGTGGTGGTTTTGA+TGG - chr3_2:20812525-20812544 Msa0398810:intron 55.0%
GGTCCATCAAAACCACCACG+GGG + chr3_2:20812531-20812550 None:intergenic 55.0%
!! GATGGACCTTATGGTGGTGG+AGG - chr3_2:20812543-20812562 Msa0398810:intron 55.0%
!! GGAGGTGGTGGTGGATATTC+AGG - chr3_2:20812561-20812580 Msa0398810:CDS 55.0%
!! GGTGGTGGTGGATATTCAGG+TGG - chr3_2:20812564-20812583 Msa0398810:CDS 55.0%
! GGTGGGTATGGTAATGCTGC+TGG - chr3_2:20812609-20812628 Msa0398810:CDS 55.0%
! GGTTATGGCGGAGGTGGTTA+TGG - chr3_2:20812654-20812673 Msa0398810:CDS 55.0%
CCATAACCACCAACACCAGG+AGG + chr3_2:20812786-20812805 None:intergenic 55.0%
!! CCTCCTGGTGTTGGTGGTTA+TGG - chr3_2:20812783-20812802 Msa0398810:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_2:20812870-20812889 Msa0398810:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_2:20812870-20812889 Msa0398810:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_2:20812870-20812889 Msa0398810:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_2:20812870-20812889 Msa0398810:intron 55.0%
GCTAACTATGGCAGTGCTCC+TGG - chr3_2:20813185-20813204 Msa0398810:intron 55.0%
TATGGCAGTGCTCCTGGTGT+TGG - chr3_2:20813191-20813210 Msa0398810:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_2:20812870-20812889 Msa0398810:intron 55.0%
CCACCATAACCACCAACACC+AGG + chr3_2:20813206-20813225 None:intergenic 55.0%
!! CCTGGTGTTGGTGGTTATGG+TGG - chr3_2:20812786-20812805 Msa0398810:intron 55.0%
!! GGTGTTGGTGGTTATGGTGG+TGG - chr3_2:20813206-20813225 Msa0398810:intron 55.0%
TACGGTAGTGCTCCTGTTGC+TGG - chr3_2:20813284-20813303 Msa0398810:intron 55.0%
CCACCGTAAACACCAGCAAC+AGG + chr3_2:20813299-20813318 None:intergenic 55.0%
CCTGTTGCTGGTGTTTACGG+TGG - chr3_2:20813296-20813315 Msa0398810:intron 55.0%
!! GCACCTGGTGTTGGTGGTTA+TGG - chr3_2:20813386-20813405 Msa0398810:intron 55.0%
CCACCATAACCACCAACACC+AGG + chr3_2:20813206-20813225 None:intergenic 55.0%
!! CCTGGTGTTGGTGGTTATGG+TGG - chr3_2:20812786-20812805 Msa0398810:intron 55.0%
!! GGTGTTGGTGGTTATGGTGG+TGG - chr3_2:20813206-20813225 Msa0398810:intron 55.0%
! GGTATTGCTCCTGGTGTTGG+TGG - chr3_2:20813461-20813480 Msa0398810:intron 55.0%
!! GCTCCTGGTGTTGGTGGTTA+TGG - chr3_2:20812870-20812889 Msa0398810:intron 55.0%
GCACCATAACCACCAACACC+AGG + chr3_2:20813473-20813492 None:intergenic 55.0%
!! AGTACCGGTGGTGTTAGTGG+GGG - chr3_2:20813527-20813546 Msa0398810:intron 55.0%
TGTTGTGTCGTGCCGGACAC+TGG - chr3_2:20809869-20809888 Msa0398810:CDS 60.0%
!! CCGAGAAGCACCGTATGGCT+TGG + chr3_2:20810509-20810528 None:intergenic 60.0%
GATCTGCATGGTCGCCGAGT+TGG - chr3_2:20812483-20812502 Msa0398810:intron 60.0%
GCCAATGAAAGACCCCGTGG+TGG - chr3_2:20812516-20812535 Msa0398810:intron 60.0%
!! GGACCTTATGGTGGTGGAGG+TGG - chr3_2:20812546-20812565 Msa0398810:intron 60.0%
CCACCACCTCCACCACCATA+AGG + chr3_2:20812552-20812571 None:intergenic 60.0%
!! CCTTATGGTGGTGGAGGTGG+TGG - chr3_2:20812549-20812568 Msa0398810:CDS 60.0%
!! TATGGTGGTGGAGGTGGTGG+TGG - chr3_2:20812552-20812571 Msa0398810:CDS 60.0%
!! TATGGTGCTGCTGTAGGCGG+TGG - chr3_2:20812732-20812751 Msa0398810:intron 60.0%
! GGTAGTCCTCCTGGTGTTGG+TGG - chr3_2:20812777-20812796 Msa0398810:intron 60.0%
!! TATGGTGCTGCTGTAGGCGG+TGG - chr3_2:20812732-20812751 Msa0398810:intron 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_2:20812864-20812883 Msa0398810:intron 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_2:20812864-20812883 Msa0398810:intron 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_2:20812864-20812883 Msa0398810:intron 60.0%
TATGGTGCGGCTGTAGGCAG+TGG - chr3_2:20813080-20813099 Msa0398810:intron 60.0%
! GGTAGTGCTCCTGGTGTTGG+TGG - chr3_2:20812864-20812883 Msa0398810:intron 60.0%
TATGGTGCGGCTGTAGGTGG+TGG - chr3_2:20813242-20813261 Msa0398810:intron 60.0%
! GGTAGTGCACCTGGTGTTGG+TGG - chr3_2:20813380-20813399 Msa0398810:intron 60.0%
!! GGTGGTTATGGTGCTGCTGC+TGG - chr3_2:20813479-20813498 Msa0398810:intron 60.0%
GTTAGTGGGGGTCCCAGCAA+TGG - chr3_2:20813539-20813558 Msa0398810:intron 60.0%
AGCAGTGGCAGTTCAGCTCC+CGG - chr3_2:20813602-20813621 Msa0398810:intron 60.0%
TCCACCAGCAAAGCTGCTCC+CGG + chr3_2:20813624-20813643 None:intergenic 60.0%
GCTGCTGGAGGTTATGGCGG+AGG - chr3_2:20812645-20812664 Msa0398810:CDS 65.0%
! GCTGGAGGTTATGGCGGAGG+TGG - chr3_2:20812648-20812667 Msa0398810:CDS 65.0%
TATGGTGCGGCTGTAGGCGG+TGG - chr3_2:20812906-20812925 Msa0398810:intron 65.0%
TATGGTGCGGCTGTAGGCGG+TGG - chr3_2:20812906-20812925 Msa0398810:intron 65.0%
! GGCAGTGCTCCTGGTGTTGG+TGG - chr3_2:20813194-20813213 Msa0398810:intron 65.0%
GGGACCCCCACTAACACCAC+CGG + chr3_2:20813534-20813553 None:intergenic 65.0%
GCAGTGGCAGTTCAGCTCCC+GGG - chr3_2:20813603-20813622 Msa0398810:intron 65.0%
CCACCAGCAAAGCTGCTCCC+GGG + chr3_2:20813623-20813642 None:intergenic 65.0%
GCTCCCGGGAGCAGCTTTGC+TGG - chr3_2:20813617-20813636 Msa0398810:five_prime_UTR 70.0%
CCCGGGAGCAGCTTTGCTGG+TGG - chr3_2:20813620-20813639 Msa0398810:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 20809368 20813739 20809368 ID=Msa0398810;Name=Msa0398810
chr3_2 mRNA 20809368 20813739 20809368 ID=Msa0398810-mRNA-1;Parent=Msa0398810;Name=Msa0398810-mRNA-1;_AED=0.13;_eAED=0.19;_QI=137|1|0.8|1|0.75|0.6|5|0|526
chr3_2 exon 20809368 20810624 20809368 ID=Msa0398810-mRNA-1:exon:4574;Parent=Msa0398810-mRNA-1
chr3_2 exon 20811801 20811907 20811801 ID=Msa0398810-mRNA-1:exon:4573;Parent=Msa0398810-mRNA-1
chr3_2 exon 20812038 20812106 20812038 ID=Msa0398810-mRNA-1:exon:4572;Parent=Msa0398810-mRNA-1
chr3_2 exon 20812549 20812698 20812549 ID=Msa0398810-mRNA-1:exon:4571;Parent=Msa0398810-mRNA-1
chr3_2 exon 20813605 20813739 20813605 ID=Msa0398810-mRNA-1:exon:4570;Parent=Msa0398810-mRNA-1
chr3_2 five_prime_UTR 20813605 20813739 20813605 ID=Msa0398810-mRNA-1:five_prime_utr;Parent=Msa0398810-mRNA-1
chr3_2 five_prime_UTR 20812697 20812698 20812697 ID=Msa0398810-mRNA-1:five_prime_utr;Parent=Msa0398810-mRNA-1
chr3_2 CDS 20812549 20812696 20812549 ID=Msa0398810-mRNA-1:cds;Parent=Msa0398810-mRNA-1
chr3_2 CDS 20812038 20812106 20812038 ID=Msa0398810-mRNA-1:cds;Parent=Msa0398810-mRNA-1
chr3_2 CDS 20811801 20811907 20811801 ID=Msa0398810-mRNA-1:cds;Parent=Msa0398810-mRNA-1
chr3_2 CDS 20809368 20810624 20809368 ID=Msa0398810-mRNA-1:cds;Parent=Msa0398810-mRNA-1
Gene Sequence

>Msa0398810

ATGGCTTTCTTTGGTAGAGTTGGGAGTTTATTAAGGAATGCAGCAAATACGAAGATCACTTCTGAGTTGAAGTTACGTTCTTCCCCATCTGTTTTCCAAGCCATACGGTGCTTCTCGGGTACTCCCAATACCAAGCTGTTTGTAGGAGGTATTTCGTATGATACTGATGAACAAAGTTTGAGCGATGCTTTTTCAAGATATGGCCAAGTTCTTGACGCAAGGATAATTATGGATCGCGAAACTGGTAGGTCCAAAGGATTTGGCTTTGTTACTTACAATACTGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGACAGGATCTGCATGGTCGCCGAGTTGGTGTAAATTTTGCCAATGAAAGACCCCGTGGTGGTTTTGATGGACCTTATGGTGGTGGAGGTGGTGGTGGATATTCAGGTGGTTATGGTAACTCTTCATACGGTGGTGGGTATGGTAATGCTGCTGGCTATAGTGGTAATGCTGCTGGAGGTTATGGCGGAGGTGGTTATGGAAACACTTACAATGATGGAACTACCAGTGGTGGTTATGGTGGAAACGATGCAAATTATGGTGCTGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTCCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCTGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGTAACAATGCAAATTATGGTGCGGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCGGCTGTAGGCGGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGAAACAATGCAAATTATGGTGCGGCTGTAGGCAGTGGTGAAAGCAATGCTGTTAACTATGGTAGTGCTCCTGGTGTTGGTGGTTATGGTAACAATGTGAATTATGGTGCTGCTGATACTGCTAACTATGGCAGTGCTCCTGGTGTTGGTGGTTATGGTGGTGGTAACAGTGCAAATTATGGTGCGGCTGTAGGTGGTGGAGAAAGCAATTCTGTTAACTACGGTAGTGCTCCTGTTGCTGGTGTTTACGGTGGTGCTAACAATGTAAATTATGGTACTGCTGTAGGTGCTAGAGAAAGCAATTCTGTTAACTATGGTAGTGCACCTGGTGTTGGTGGTTATGGTGGTGGTAACAGTGCCAATTACAGTGGTGGAGAAAGCAATTCTGTTAACTATGGTATTGCTCCTGGTGTTGGTGGTTATGGTGCTGCTGCTGGATTTGGCAAGAGTGATAACCATTATAGTACCGGTGGTGTTAGTGGGGGTCCCAGCAATGGTTTCTCCCGTAATCAATACCCTGGAAGTGCAACAGGGTATAGCAGTGGCAGTTCAGCTCCCGGGAGCAGCTTTGCTGGTGGATATGATAGAACTGGAGGACTTGCATACGGTGAAAGTGGTCAAGAAGATTTCAAGAACGATGATCATGAAGTTGATGCTTTTGCTAAACGGGCTTGA
Protein sequence

>Msa0398810

MAFFGRVGSLLRNAANTKITSELKLRSSPSVFQAIRCFSGTPNTKLFVGGISYDTDEQSLSDAFSRYGQVLDARIIMDRETGRSKGFGFVTYNTVEEASSAIQALDGQDLHGRRVGVNFANERPRGGFDGPYGGGGGGGYSGGYGNSSYGGGYGNAAGYSGNAAGGYGGGGYGNTYNDGTTSGGYGGNDANYGAAVGGGESNAVNYGSPPGVGGYGNNANYGAAVGGGESNAVNYGSAPGVGGYGNNANYGAAVGGGESNAVNYGSAPGVGGYGNNANYGAAVGGGESNAVNYGSAPGVGGYGNNANYGAAVGSGESNAVNYGSAPGVGGYGNNVNYGAADTANYGSAPGVGGYGGGNSANYGAAVGGGESNSVNYGSAPVAGVYGGANNVNYGTAVGARESNSVNYGSAPGVGGYGGGNSANYSGGESNSVNYGIAPGVGGYGAAAGFGKSDNHYSTGGVSGGPSNGFSRNQYPGSATGYSSGSSAPGSSFAGGYDRTGGLAYGESGQEDFKNDDHEVDAFAKRA*