Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070370 | sp|Q7X9V2|PIE1_ARATH | 78.761 | 113 | 23 | 1 | 1 | 113 | 14 | 125 | 4.81e-45 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070370 | A0A2Z6N0L1 | 93.805 | 113 | 6 | 1 | 1 | 113 | 1 | 112 | 1.48e-65 | 212 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa0070370 | 0.800047 | 1.730971e-48 | -8.615850e-47 |
| Msa0031180 | Msa0070370 | 0.803749 | 3.004454e-49 | -8.615850e-47 |
| Msa0043560 | Msa0070370 | 0.808566 | 2.908164e-50 | -8.615850e-47 |
| Msa0054530 | Msa0070370 | 0.800166 | 1.637156e-48 | -8.615850e-47 |
| Msa0054820 | Msa0070370 | 0.802159 | 6.402745e-49 | -8.615850e-47 |
| Msa0070370 | Msa0078060 | 0.811818 | 5.789367e-51 | -8.615850e-47 |
| Msa0070370 | Msa0078480 | 0.805864 | 1.086441e-49 | -8.615850e-47 |
| Msa0070370 | Msa0079400 | 0.802950 | 4.397914e-49 | -8.615850e-47 |
| Msa0070370 | Msa0091780 | 0.802893 | 4.519151e-49 | -8.615850e-47 |
| Msa0070370 | Msa0117910 | 0.819527 | 1.108324e-52 | -8.615850e-47 |
| Msa0070370 | Msa0123300 | 0.822675 | 2.086719e-53 | -8.615850e-47 |
| Msa0070370 | Msa0126230 | 0.825914 | 3.613905e-54 | -8.615850e-47 |
| Msa0070370 | Msa0142480 | 0.814538 | 1.464356e-51 | -8.615850e-47 |
| Msa0070370 | Msa0167850 | 0.816414 | 5.600224e-52 | -8.615850e-47 |
| Msa0070370 | Msa0237310 | 0.806946 | 6.424836e-50 | -8.615850e-47 |
| Msa0070370 | Msa0248520 | 0.802889 | 4.527536e-49 | -8.615850e-47 |
| Msa0070370 | Msa0249100 | 0.807029 | 6.170258e-50 | -8.615850e-47 |
| Msa0070370 | Msa0251270 | 0.803353 | 3.630184e-49 | -8.615850e-47 |
| Msa0070370 | Msa0274730 | 0.804086 | 2.557684e-49 | -8.615850e-47 |
| Msa0070370 | Msa0315530 | 0.800695 | 1.277292e-48 | -8.615850e-47 |
| Msa0070370 | Msa0318880 | 0.813463 | 2.526865e-51 | -8.615850e-47 |
| Msa0070370 | Msa0320800 | 0.804894 | 1.735312e-49 | -8.615850e-47 |
| Msa0070370 | Msa0333920 | 0.822980 | 1.771922e-53 | -8.615850e-47 |
| Msa0070370 | Msa0334040 | 0.805426 | 1.342918e-49 | -8.615850e-47 |
| Msa0070370 | Msa0343300 | 0.802650 | 5.072161e-49 | -8.615850e-47 |
| Msa0070370 | Msa0363400 | 0.819652 | 1.037897e-52 | -8.615850e-47 |
| Msa0070370 | Msa0387250 | 0.816136 | 6.459134e-52 | -8.615850e-47 |
| Msa0070370 | Msa0388960 | 0.807915 | 4.002368e-50 | -8.615850e-47 |
| Msa0070370 | Msa0423840 | 0.809218 | 2.109161e-50 | -8.615850e-47 |
| Msa0070370 | Msa0439970 | 0.806792 | 6.926955e-50 | -8.615850e-47 |
| Msa0070370 | Msa0484780 | 0.808921 | 2.441487e-50 | -8.615850e-47 |
| Msa0070370 | Msa0576680 | 0.812774 | 3.580236e-51 | -8.615850e-47 |
| Msa0070370 | Msa0626220 | 0.808215 | 3.455764e-50 | -8.615850e-47 |
| Msa0070370 | Msa0626280 | 0.803015 | 4.264041e-49 | -8.615850e-47 |
| Msa0070370 | Msa0663250 | 0.823695 | 1.206272e-53 | -8.615850e-47 |
| Msa0070370 | Msa0682550 | 0.814801 | 1.280081e-51 | -8.615850e-47 |
| Msa0070370 | Msa0685750 | 0.809875 | 1.524154e-50 | -8.615850e-47 |
| Msa0070370 | Msa0687450 | 0.807789 | 4.257057e-50 | -8.615850e-47 |
| Msa0070370 | Msa0687840 | 0.801442 | 8.985233e-49 | -8.615850e-47 |
| Msa0070370 | Msa0689760 | 0.819935 | 8.942151e-53 | -8.615850e-47 |
| Msa0070370 | Msa0702350 | 0.807248 | 5.547077e-50 | -8.615850e-47 |
| Msa0070370 | Msa0702570 | 0.807201 | 5.675070e-50 | -8.615850e-47 |
| Msa0070370 | Msa0716860 | 0.801893 | 7.262881e-49 | -8.615850e-47 |
| Msa0070370 | Msa0740640 | 0.813750 | 2.184891e-51 | -8.615850e-47 |
| Msa0070370 | Msa0749400 | 0.824565 | 7.534934e-54 | -8.615850e-47 |
| Msa0070370 | Msa0766580 | 0.804140 | 2.491701e-49 | -8.615850e-47 |
| Msa0070370 | Msa0800700 | 0.806716 | 7.185548e-50 | -8.615850e-47 |
| Msa0070370 | Msa0828920 | 0.805959 | 1.037696e-49 | -8.615850e-47 |
| Msa0070370 | Msa0832090 | 0.803954 | 2.724443e-49 | -8.615850e-47 |
| Msa0070370 | Msa0908050 | 0.809500 | 1.835020e-50 | -8.615850e-47 |
| Msa0070370 | Msa1010070 | 0.807112 | 5.925421e-50 | -8.615850e-47 |
| Msa0070370 | Msa1020940 | 0.806617 | 7.539305e-50 | -8.615850e-47 |
| Msa0070370 | Msa1179940 | 0.812324 | 4.489328e-51 | -8.615850e-47 |
| Msa0070370 | Msa1179970 | 0.821391 | 4.138786e-53 | -8.615850e-47 |
| Msa0070370 | Msa1201640 | 0.805680 | 1.187829e-49 | -8.615850e-47 |
| Msa0070370 | Msa1224830 | 0.812950 | 3.275011e-51 | -8.615850e-47 |
| Msa0070370 | Msa1306850 | 0.807965 | 3.905283e-50 | -8.615850e-47 |
| Msa0070370 | Msa1313150 | 0.803265 | 3.785899e-49 | -8.615850e-47 |
| Msa0070370 | Msa1332000 | 0.803591 | 3.240808e-49 | -8.615850e-47 |
| Msa0070370 | Msa1333730 | 0.814075 | 1.852784e-51 | -8.615850e-47 |
| Msa0070370 | Msa1338250 | 0.824643 | 7.221065e-54 | -8.615850e-47 |
| Msa0070370 | Msa1348360 | 0.821554 | 3.796492e-53 | -8.615850e-47 |
| Msa0070370 | Msa1418260 | 0.840043 | 1.102970e-57 | -8.615850e-47 |
| Msa0070370 | Msa1420250 | 0.821937 | 3.095539e-53 | -8.615850e-47 |
| Msa0070370 | Msa1435260 | 0.824754 | 6.802063e-54 | -8.615850e-47 |
| Msa0070370 | Msa1439610 | 0.807760 | 4.319221e-50 | -8.615850e-47 |
| Msa0070370 | Msa1457430 | 0.802127 | 6.499874e-49 | -8.615850e-47 |
| Msa0070370 | Msa1466590 | 0.827764 | 1.306305e-54 | -8.615850e-47 |
| Msa0070370 | Msa1467000 | 0.826552 | 2.547779e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070370 | MtrunA17_Chr1g0175191 | 97.345 | 113 | 3 | 0 | 1 | 113 | 1 | 113 | 5.02e-69 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070370 | AT3G12810.1 | 78.761 | 113 | 23 | 1 | 1 | 113 | 14 | 125 | 4.89e-46 | 158 |
| Msa0070370 | AT3G12810.2 | 78.704 | 108 | 22 | 1 | 1 | 108 | 14 | 120 | 2.14e-43 | 150 |
Find 60 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTAACATGCCTTCTTTGC+TGG | 0.246470 | 1_2:-40857686 | None:intergenic |
| CTAAGGATGTTAAGAAGTTT+TGG | 0.269445 | 1_2:+40857893 | Msa0070370:CDS |
| GACATGGTCCCAATGAGTTT+TGG | 0.289630 | 1_2:-40857484 | None:intergenic |
| TATTAAAATGATTTGATTGC+TGG | 0.294996 | 1_2:+40857945 | Msa0070370:three_prime_UTR |
| AGTTGCACTAAATATTTCTA+AGG | 0.336397 | 1_2:+40857876 | Msa0070370:CDS |
| AGAAGAACGGCAAGAGGAAT+TGG | 0.385497 | 1_2:+40859620 | Msa0070370:three_prime_UTR |
| TATTGTAGATGCTTGAGTTT+TGG | 0.396897 | 1_2:+40855158 | Msa0070370:five_prime_UTR |
| TCATCATGATCAGGTGCATC+AGG | 0.404662 | 1_2:-40858428 | None:intergenic |
| GTCAGGCTGTTGAAGCTTCA+AGG | 0.410029 | 1_2:+40857448 | Msa0070370:intron |
| ACTTCGAGTCAGAGAGGAAA+TGG | 0.417938 | 1_2:+40857629 | Msa0070370:CDS |
| TTTCATCCTTTGTTGTTCCT+AGG | 0.421470 | 1_2:+40858002 | Msa0070370:three_prime_UTR |
| GCTTTAAAAGCCAGCAAAGA+AGG | 0.437549 | 1_2:+40857676 | Msa0070370:CDS |
| ATTAGCATCCACAAGATTCT+CGG | 0.460988 | 1_2:-40858225 | None:intergenic |
| TTGAAGTTAGCGTCGGAAAA+CGG | 0.466817 | 1_2:-40854989 | None:intergenic |
| TACCCACCATTAGCTTCCTT+AGG | 0.469677 | 1_2:-40858326 | None:intergenic |
| GGTTCTTTACAAGCATCAAA+TGG | 0.472530 | 1_2:+40858023 | Msa0070370:three_prime_UTR |
| AATGAACCTAAGGAAGCTAA+TGG | 0.480087 | 1_2:+40858320 | Msa0070370:three_prime_UTR |
| TCATATTCTTCATCATGATC+AGG | 0.480587 | 1_2:-40858437 | None:intergenic |
| CTAGACGACCCAAAACTCAT+TGG | 0.481645 | 1_2:+40857475 | Msa0070370:CDS |
| ATCCTGAGTATAAAGCTAAA+CGG | 0.493593 | 1_2:+40855220 | Msa0070370:CDS |
| TCAGGATCAATCTTCGACCT+TGG | 0.499943 | 1_2:-40855204 | None:intergenic |
| ATGAAATGAAGGACATCAAA+GGG | 0.507894 | 1_2:-40857985 | None:intergenic |
| TGCCGTTTAGCTTTATACTC+AGG | 0.508370 | 1_2:-40855222 | None:intergenic |
| GAGGAAATGGAAATTAGCTC+AGG | 0.511266 | 1_2:+40857642 | Msa0070370:CDS |
| GTATAAAGCTAAACGGCATA+AGG | 0.513797 | 1_2:+40855227 | Msa0070370:CDS |
| AACAACAAAGGATGAAATGA+AGG | 0.517724 | 1_2:-40857996 | None:intergenic |
| TAGACGACCCAAAACTCATT+GGG | 0.525268 | 1_2:+40857476 | Msa0070370:CDS |
| TTTCAGATACTCAACTATGT+TGG | 0.528536 | 1_2:+40858202 | Msa0070370:intron |
| GCATGTTAGATCCAGCTACA+AGG | 0.540795 | 1_2:+40857698 | Msa0070370:CDS |
| AGACATTATCAATGAACCTA+AGG | 0.541993 | 1_2:+40858310 | Msa0070370:three_prime_UTR |
| TCAGGCTGTTGAAGCTTCAA+GGG | 0.557827 | 1_2:+40857449 | Msa0070370:intron |
| GGACCATGTCTTAGAAGAGA+TGG | 0.564108 | 1_2:+40857497 | Msa0070370:CDS |
| AAGGGGTGAAAAGAAGATGA+AGG | 0.565671 | 1_2:+40857717 | Msa0070370:CDS |
| GAAAGTGTGAGTGAGGAAGA+TGG | 0.568365 | 1_2:-40854884 | None:intergenic |
| TTGATGCTTGTAAAGAACCT+AGG | 0.569760 | 1_2:-40858019 | None:intergenic |
| CATGTTAGATCCAGCTACAA+GGG | 0.572694 | 1_2:+40857699 | Msa0070370:CDS |
| TGTACAATCTGACGATGTAT+CGG | 0.585579 | 1_2:+40858460 | Msa0070370:three_prime_UTR |
| AGAGATGGTGTGGCTATCAA+AGG | 0.587193 | 1_2:+40857512 | Msa0070370:CDS |
| AGAGAGAGAGAAAACGATGA+TGG | 0.593213 | 1_2:-40854848 | None:intergenic |
| AACTAAAGAAGAACGGCAAG+AGG | 0.597437 | 1_2:+40859614 | Msa0070370:three_prime_UTR |
| GATGAAATGAAGGACATCAA+AGG | 0.602401 | 1_2:-40857986 | None:intergenic |
| CTCTTATAACTAAAGAAGAA+CGG | 0.602781 | 1_2:+40859607 | Msa0070370:three_prime_UTR |
| GGAAAACGGTGAGAAGAAGA+AGG | 0.603048 | 1_2:-40854975 | None:intergenic |
| CAATGGCGTCGAAAGGTCCA+AGG | 0.603635 | 1_2:+40855187 | Msa0070370:exon |
| TCGTTCGTTGAAGTTAGCGT+CGG | 0.605241 | 1_2:-40854996 | None:intergenic |
| GTGAATGCAATGGCGTCGAA+AGG | 0.607430 | 1_2:+40855180 | Msa0070370:exon |
| TCTTTGCATTGAAAACTCAT+CGG | 0.608509 | 1_2:-40858278 | None:intergenic |
| GTTGTGAAGAGCGTTGAGAA+TGG | 0.609672 | 1_2:-40854908 | None:intergenic |
| ACGAGAAGAAAGAAACGAAG+TGG | 0.613759 | 1_2:-40854930 | None:intergenic |
| GAATGGTGAAAGTGTGAGTG+AGG | 0.626805 | 1_2:-40854891 | None:intergenic |
| CGCAGGACTTCGAGTCAGAG+AGG | 0.627101 | 1_2:+40857623 | Msa0070370:intron |
| GCAAACGCTCGAGGAAGATG+AGG | 0.634088 | 1_2:+40859584 | Msa0070370:three_prime_UTR |
| TGATGATGAGCAAACGCTCG+AGG | 0.644327 | 1_2:+40859575 | Msa0070370:three_prime_UTR |
| ATGTCTTAGAAGAGATGGTG+TGG | 0.644491 | 1_2:+40857502 | Msa0070370:CDS |
| ACACCATCTCTTCTAAGACA+TGG | 0.650112 | 1_2:-40857500 | None:intergenic |
| TTTCAATGCAAAGATATAGG+CGG | 0.660123 | 1_2:+40858287 | Msa0070370:three_prime_UTR |
| ATGTTAGATCCAGCTACAAG+GGG | 0.672689 | 1_2:+40857700 | Msa0070370:CDS |
| AAAGAACCTAGGAACAACAA+AGG | 0.701072 | 1_2:-40858008 | None:intergenic |
| TTGTACAGGAAGAAGAGCAG+CGG | 0.707252 | 1_2:+40857845 | Msa0070370:intron |
| TATGTTGGCCGAGAATCTTG+TGG | 0.707455 | 1_2:+40858217 | Msa0070370:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTTATATTCAACAAA+GGG | + | chr1_2:40855864-40855883 | Msa0070370:intron | 10.0% |
| !! | TTAAAACAACATTATTTAAT+AGG | + | chr1_2:40859362-40859381 | Msa0070370:intron | 10.0% |
| !! | GATTTATTTATATTCAACAA+AGG | + | chr1_2:40855863-40855882 | Msa0070370:intron | 15.0% |
| !! | CAATAATTTAAGAAGAAAAT+GGG | - | chr1_2:40857417-40857436 | None:intergenic | 15.0% |
| !! | TCAATAATTTAAGAAGAAAA+TGG | - | chr1_2:40857418-40857437 | None:intergenic | 15.0% |
| !!! | TAACTTTGTTTTAAGAAAAT+AGG | + | chr1_2:40859156-40859175 | Msa0070370:intron | 15.0% |
| !!! | AACTTTGTTTTAAGAAAATA+GGG | + | chr1_2:40859157-40859176 | Msa0070370:intron | 15.0% |
| !! | TTATTGCTTCTTTAAATTTG+AGG | + | chr1_2:40855488-40855507 | Msa0070370:intron | 20.0% |
| !!! | GGTATTTTGGAAATTTATTT+CGG | + | chr1_2:40855523-40855542 | Msa0070370:intron | 20.0% |
| !! | ACATAATTATTGTCAAATAG+CGG | - | chr1_2:40855617-40855636 | None:intergenic | 20.0% |
| !!! | ATAACAATATAAAGTGCTAT+AGG | + | chr1_2:40855823-40855842 | Msa0070370:intron | 20.0% |
| !! | GATATAAAACTTATTGAGAT+CGG | + | chr1_2:40855933-40855952 | Msa0070370:intron | 20.0% |
| !!! | AAGTTTTCTAAGTCAAAATA+TGG | + | chr1_2:40856709-40856728 | Msa0070370:intron | 20.0% |
| !! | TATTAAAATGATTTGATTGC+TGG | + | chr1_2:40857945-40857964 | Msa0070370:three_prime_UTR | 20.0% |
| !! | AGAAAATCAGGAAAAATAAA+AGG | - | chr1_2:40858123-40858142 | None:intergenic | 20.0% |
| !! | AATTTCTACTTGTAACTTTA+AGG | - | chr1_2:40858363-40858382 | None:intergenic | 20.0% |
| !! | TATAAAGTAGAAAATCTATC+CGG | - | chr1_2:40858574-40858593 | None:intergenic | 20.0% |
| !! | AAATTCCATAATAATGATGA+TGG | - | chr1_2:40858629-40858648 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTTCCAACAAATT+TGG | - | chr1_2:40858753-40858772 | None:intergenic | 20.0% |
| !! | AATAACTATTCCAACAAATA+TGG | - | chr1_2:40858832-40858851 | None:intergenic | 20.0% |
| !!! | ACTTTGTTTTAAGAAAATAG+GGG | + | chr1_2:40859158-40859177 | Msa0070370:intron | 20.0% |
| !!! | GAAATTTTATCAGTTAAAAG+TGG | + | chr1_2:40859187-40859206 | Msa0070370:intron | 20.0% |
| !!! | ATACAATTTTTATTAGCACA+TGG | - | chr1_2:40859340-40859359 | None:intergenic | 20.0% |
| !!! | TTTCATGCATTATTTTGATG+TGG | + | chr1_2:40855308-40855327 | Msa0070370:intron | 25.0% |
| !!! | GTTTCTTTAATTTTGAGACT+TGG | + | chr1_2:40855383-40855402 | Msa0070370:intron | 25.0% |
| !!! | ATTTTGGAAATTTATTTCGG+CGG | + | chr1_2:40855526-40855545 | Msa0070370:intron | 25.0% |
| !! | TAATTATGTATTGCGCTTTT+TGG | + | chr1_2:40855628-40855647 | Msa0070370:intron | 25.0% |
| ! | AGTTGAATTGTTTGATGAAA+AGG | + | chr1_2:40855958-40855977 | Msa0070370:intron | 25.0% |
| ! | AACTGAAAGTTATCTTGATT+AGG | + | chr1_2:40856436-40856455 | Msa0070370:intron | 25.0% |
| !!! | ATGTGTATTTTAATCTAGGA+AGG | + | chr1_2:40856572-40856591 | Msa0070370:intron | 25.0% |
| ! | AACAACAATCCACAAAATTA+TGG | - | chr1_2:40856675-40856694 | None:intergenic | 25.0% |
| ! | TCTATTACTTAGTCTATTGA+TGG | + | chr1_2:40856740-40856759 | Msa0070370:intron | 25.0% |
| ! | ACAAGTGAAATTTCAATTCA+TGG | - | chr1_2:40856848-40856867 | None:intergenic | 25.0% |
| ! | TCACTTGTTTATTAGAAGAA+TGG | + | chr1_2:40856860-40856879 | Msa0070370:intron | 25.0% |
| ! | CACTTGTTTATTAGAAGAAT+GGG | + | chr1_2:40856861-40856880 | Msa0070370:intron | 25.0% |
| ! | TACCATAGTTGAATTACTAA+GGG | - | chr1_2:40857075-40857094 | None:intergenic | 25.0% |
| ! | ATACCATAGTTGAATTACTA+AGG | - | chr1_2:40857076-40857095 | None:intergenic | 25.0% |
| ! | GTTAAATTTAAGCACAATGT+AGG | + | chr1_2:40857163-40857182 | Msa0070370:intron | 25.0% |
| !! | GATTTCTTTCTTCTTCTTTT+GGG | - | chr1_2:40857344-40857363 | None:intergenic | 25.0% |
| !! | TGATTTCTTTCTTCTTCTTT+TGG | - | chr1_2:40857345-40857364 | None:intergenic | 25.0% |
| ! | AGAAGAAAGAAATCATCAAA+TGG | + | chr1_2:40857350-40857369 | Msa0070370:intron | 25.0% |
| ! | GAAGAAAGAAATCATCAAAT+GGG | + | chr1_2:40857351-40857370 | Msa0070370:intron | 25.0% |
| !! | AACATCTGAAATGATTTCTA+CGG | + | chr1_2:40857555-40857574 | Msa0070370:intron | 25.0% |
| !! | AGTTGCACTAAATATTTCTA+AGG | + | chr1_2:40857876-40857895 | Msa0070370:CDS | 25.0% |
| ! | ACTTGATGAGAAAAAGAAAA+AGG | + | chr1_2:40858047-40858066 | Msa0070370:three_prime_UTR | 25.0% |
| ! | TGTTATTGCAAAAGAAAATC+AGG | - | chr1_2:40858135-40858154 | None:intergenic | 25.0% |
| !! | AGTTTTCAATGCAAAGATAT+AGG | + | chr1_2:40858284-40858303 | Msa0070370:three_prime_UTR | 25.0% |
| ! | AAAAGTAAAGAATCTGAGAA+TGG | - | chr1_2:40858510-40858529 | None:intergenic | 25.0% |
| ! | ATAAAGTAGAAAATCTATCC+GGG | - | chr1_2:40858573-40858592 | None:intergenic | 25.0% |
| !! | CTTGCTAGTTTAGATATATA+AGG | + | chr1_2:40858930-40858949 | Msa0070370:intron | 25.0% |
| !!! | AAATAACATAGCTTTATCTC+TGG | - | chr1_2:40858991-40859010 | None:intergenic | 25.0% |
| ! | GAAAAGAAAATTCACACTTA+AGG | - | chr1_2:40859301-40859320 | None:intergenic | 25.0% |
| !! | GATATCTGCATTTTCTAATT+AGG | + | chr1_2:40859384-40859403 | Msa0070370:intron | 25.0% |
| ! | AACTTCCAATAGAAAAATGA+TGG | - | chr1_2:40859454-40859473 | None:intergenic | 25.0% |
| ! | ATCATGTTTATTGTTCCAAA+TGG | + | chr1_2:40859507-40859526 | Msa0070370:intron | 25.0% |
| ! | TCATGTTTATTGTTCCAAAT+GGG | + | chr1_2:40859508-40859527 | Msa0070370:intron | 25.0% |
| ! | ATTAAGTCCATATATGAGAT+TGG | - | chr1_2:40859545-40859564 | None:intergenic | 25.0% |
| ! | TATATGGACTTAATATTTCC+AGG | + | chr1_2:40859551-40859570 | Msa0070370:intron | 25.0% |
| ! | CTCTTATAACTAAAGAAGAA+CGG | + | chr1_2:40859607-40859626 | Msa0070370:three_prime_UTR | 25.0% |
| !!! | TTCTACTTTTTCACTCTTCA+CGG | + | chr1_2:40855020-40855039 | Msa0070370:five_prime_UTR | 30.0% |
| ! | TATTGTAGATGCTTGAGTTT+TGG | + | chr1_2:40855158-40855177 | Msa0070370:five_prime_UTR | 30.0% |
| ATCCTGAGTATAAAGCTAAA+CGG | + | chr1_2:40855220-40855239 | Msa0070370:CDS | 30.0% | |
| !!! | TTTTGAGACTTGGCTTTTTT+CGG | + | chr1_2:40855393-40855412 | Msa0070370:intron | 30.0% |
| ! | TTTCATGCATTATTTTCCTG+TGG | + | chr1_2:40855416-40855435 | Msa0070370:intron | 30.0% |
| TACAATATACATCATTCCAC+AGG | - | chr1_2:40855435-40855454 | None:intergenic | 30.0% | |
| TATACTAGTGTTGTCAATTG+TGG | + | chr1_2:40855664-40855683 | Msa0070370:intron | 30.0% | |
| ATACTAGTGTTGTCAATTGT+GGG | + | chr1_2:40855665-40855684 | Msa0070370:intron | 30.0% | |
| TACAAAGTATAGTCAAGTAG+CGG | - | chr1_2:40855752-40855771 | None:intergenic | 30.0% | |
| TTGTATTAGATTACGTATCG+TGG | + | chr1_2:40855767-40855786 | Msa0070370:intron | 30.0% | |
| TTCAACAAAGGGTTACTTAA+CGG | + | chr1_2:40855875-40855894 | Msa0070370:intron | 30.0% | |
| TATAGATGAGCTTCTCAATA+AGG | + | chr1_2:40856150-40856169 | Msa0070370:intron | 30.0% | |
| ATAGATGAGCTTCTCAATAA+GGG | + | chr1_2:40856151-40856170 | Msa0070370:intron | 30.0% | |
| AAAAACAATCTGATACTTCG+AGG | - | chr1_2:40856320-40856339 | None:intergenic | 30.0% | |
| !! | TACTTATCCGAAAGTATCTT+AGG | - | chr1_2:40856400-40856419 | None:intergenic | 30.0% |
| !! | TTCGTTTAACTTGTAGACTA+GGG | + | chr1_2:40856515-40856534 | Msa0070370:intron | 30.0% |
| !!! | GTGCATGTGTATTTTAATCT+AGG | + | chr1_2:40856568-40856587 | Msa0070370:intron | 30.0% |
| ATTATGGAGATGTCAATGAA+AGG | - | chr1_2:40856659-40856678 | None:intergenic | 30.0% | |
| ! | TTGACATCTCCATAATTTTG+TGG | + | chr1_2:40856663-40856682 | Msa0070370:intron | 30.0% |
| ACCATAGTTGAATTACTAAG+GGG | - | chr1_2:40857074-40857093 | None:intergenic | 30.0% | |
| ! | TTATTTAGAAGAGTACAAGC+AGG | - | chr1_2:40857141-40857160 | None:intergenic | 30.0% |
| AAATTTAAGCACAATGTAGG+TGG | + | chr1_2:40857166-40857185 | Msa0070370:intron | 30.0% | |
| AATTTAAGCACAATGTAGGT+GGG | + | chr1_2:40857167-40857186 | Msa0070370:intron | 30.0% | |
| ! | ATTTTCCAAGCTTCAAGTAA+GGG | + | chr1_2:40857197-40857216 | Msa0070370:intron | 30.0% |
| CATGATGAGAGTAATAAGAA+AGG | + | chr1_2:40857302-40857321 | Msa0070370:intron | 30.0% | |
| !! | TTATTGAATTTTGCTGTGTC+AGG | + | chr1_2:40857431-40857450 | Msa0070370:intron | 30.0% |
| ! | CTAAGGATGTTAAGAAGTTT+TGG | + | chr1_2:40857893-40857912 | Msa0070370:CDS | 30.0% |
| TTGGACAAAAATAGAAAAGC+TGG | + | chr1_2:40857912-40857931 | Msa0070370:CDS | 30.0% | |
| ATGAAATGAAGGACATCAAA+GGG | - | chr1_2:40857988-40858007 | None:intergenic | 30.0% | |
| AACAACAAAGGATGAAATGA+AGG | - | chr1_2:40857999-40858018 | None:intergenic | 30.0% | |
| ! | AAACAGCTTGAGTTTCTTTT+AGG | + | chr1_2:40858078-40858097 | Msa0070370:three_prime_UTR | 30.0% |
| ! | AACAGCTTGAGTTTCTTTTA+GGG | + | chr1_2:40858079-40858098 | Msa0070370:three_prime_UTR | 30.0% |
| TTTCAGATACTCAACTATGT+TGG | + | chr1_2:40858202-40858221 | Msa0070370:intron | 30.0% | |
| TCTTTGCATTGAAAACTCAT+CGG | - | chr1_2:40858281-40858300 | None:intergenic | 30.0% | |
| TTTCAATGCAAAGATATAGG+CGG | + | chr1_2:40858287-40858306 | Msa0070370:three_prime_UTR | 30.0% | |
| AGACATTATCAATGAACCTA+AGG | + | chr1_2:40858310-40858329 | Msa0070370:three_prime_UTR | 30.0% | |
| GTTTATACTCTGCTACAAAA+TGG | - | chr1_2:40858409-40858428 | None:intergenic | 30.0% | |
| TCATATTCTTCATCATGATC+AGG | - | chr1_2:40858440-40858459 | None:intergenic | 30.0% | |
| GAGAGACAAGTTAAAATCTT+AGG | - | chr1_2:40858545-40858564 | None:intergenic | 30.0% | |
| ATTTATTACAGAACACTGAC+AGG | + | chr1_2:40858645-40858664 | Msa0070370:intron | 30.0% | |
| TTGGATTTCAGTCAAACAAT+GGG | - | chr1_2:40858734-40858753 | None:intergenic | 30.0% | |
| TTTGGATTTCAGTCAAACAA+TGG | - | chr1_2:40858735-40858754 | None:intergenic | 30.0% | |
| TGACTGAAATCCAAATTTGT+TGG | + | chr1_2:40858740-40858759 | Msa0070370:intron | 30.0% | |
| TTGTTTCAATGTCAGAATGA+AGG | - | chr1_2:40858898-40858917 | None:intergenic | 30.0% | |
| AAAGCTTATATCCCACTAAA+GGG | - | chr1_2:40859120-40859139 | None:intergenic | 30.0% | |
| AAAAGCTTATATCCCACTAA+AGG | - | chr1_2:40859121-40859140 | None:intergenic | 30.0% | |
| ! | TTAGTGGGATATAAGCTTTT+TGG | + | chr1_2:40859121-40859140 | Msa0070370:intron | 30.0% |
| !! | TTTTAAGAAAATAGGGGAAG+TGG | + | chr1_2:40859164-40859183 | Msa0070370:intron | 30.0% |
| TTTAAGAAAATAGGGGAAGT+GGG | + | chr1_2:40859165-40859184 | Msa0070370:intron | 30.0% | |
| TGATAATCAGATGAGAAAGA+CGG | - | chr1_2:40859491-40859510 | None:intergenic | 30.0% | |
| !! | AGAAAACGTGAAAAGCGTTT+CGG | - | chr1_2:40855060-40855079 | None:intergenic | 35.0% |
| ! | TTTTCTTCACGCATCGAATT+AGG | + | chr1_2:40855074-40855093 | Msa0070370:intron | 35.0% |
| !! | TTGAGTTTTGGTGAATGCAA+TGG | + | chr1_2:40855170-40855189 | Msa0070370:exon | 35.0% |
| GTATAAAGCTAAACGGCATA+AGG | + | chr1_2:40855227-40855246 | Msa0070370:CDS | 35.0% | |
| ! | GCTTCTTTAAATTTGAGGCT+TGG | + | chr1_2:40855493-40855512 | Msa0070370:intron | 35.0% |
| !!! | AATTTGAGGCTTGGCTTTTT+TGG | + | chr1_2:40855502-40855521 | Msa0070370:intron | 35.0% |
| !!! | GCTTGGCTTTTTTGGTATTT+TGG | + | chr1_2:40855510-40855529 | Msa0070370:intron | 35.0% |
| TCAACAAAGGGTTACTTAAC+GGG | + | chr1_2:40855876-40855895 | Msa0070370:intron | 35.0% | |
| GGGAATTAGAAATTAAGGTG+TGG | + | chr1_2:40855899-40855918 | Msa0070370:intron | 35.0% | |
| GAAGATATTGTTAACACCAG+TGG | + | chr1_2:40856062-40856081 | Msa0070370:intron | 35.0% | |
| ! | AAATTTTCACCACTGCCTTA+GGG | - | chr1_2:40856209-40856228 | None:intergenic | 35.0% |
| ATGCCTGGATACTTCAAAAT+AGG | + | chr1_2:40856242-40856261 | Msa0070370:intron | 35.0% | |
| TACATATCCGTAAGTATCCT+AGG | - | chr1_2:40856296-40856315 | None:intergenic | 35.0% | |
| ! | AATACGTTTGAGACACTTCA+TGG | + | chr1_2:40856369-40856388 | Msa0070370:intron | 35.0% |
| GGATACTCCTAAGATACTTT+CGG | + | chr1_2:40856390-40856409 | Msa0070370:intron | 35.0% | |
| AAACATTCAAACCAATCACG+AGG | + | chr1_2:40856468-40856487 | Msa0070370:intron | 35.0% | |
| AGTTAAACGAAGGAATCCAT+GGG | - | chr1_2:40856506-40856525 | None:intergenic | 35.0% | |
| AAGTTAAACGAAGGAATCCA+TGG | - | chr1_2:40856507-40856526 | None:intergenic | 35.0% | |
| CTAGTCTACAAGTTAAACGA+AGG | - | chr1_2:40856516-40856535 | None:intergenic | 35.0% | |
| !! | CTTCGTTTAACTTGTAGACT+AGG | + | chr1_2:40856514-40856533 | Msa0070370:intron | 35.0% |
| !! | TCGTTTAACTTGTAGACTAG+GGG | + | chr1_2:40856516-40856535 | Msa0070370:intron | 35.0% |
| !!! | ACATCTAGTTTTGCGATACT+TGG | + | chr1_2:40856607-40856626 | Msa0070370:intron | 35.0% |
| ! | GGCTCTAATCTAATCACAAA+TGG | - | chr1_2:40856638-40856657 | None:intergenic | 35.0% |
| TTTCGTGGTCAATACTCAAT+AGG | + | chr1_2:40856900-40856919 | Msa0070370:intron | 35.0% | |
| TTCGTGGTCAATACTCAATA+GGG | + | chr1_2:40856901-40856920 | Msa0070370:intron | 35.0% | |
| GCAAACTATTCCAAAAGCTT+AGG | + | chr1_2:40856944-40856963 | Msa0070370:intron | 35.0% | |
| TCTAACTCAACTCAATCACT+GGG | - | chr1_2:40857113-40857132 | None:intergenic | 35.0% | |
| ATCTAACTCAACTCAATCAC+TGG | - | chr1_2:40857114-40857133 | None:intergenic | 35.0% | |
| ! | CATTTTCCAAGCTTCAAGTA+AGG | + | chr1_2:40857196-40857215 | Msa0070370:intron | 35.0% |
| ! | TTTTCCAAGCTTCAAGTAAG+GGG | + | chr1_2:40857198-40857217 | Msa0070370:intron | 35.0% |
| GTTGGGTAAAAGCAAATGAA+TGG | - | chr1_2:40857256-40857275 | None:intergenic | 35.0% | |
| ! | TACCCAACAACTTAAGCTTT+TGG | + | chr1_2:40857268-40857287 | Msa0070370:intron | 35.0% |
| ! | ACCCAACAACTTAAGCTTTT+GGG | + | chr1_2:40857269-40857288 | Msa0070370:intron | 35.0% |
| ! | TCCCAAAAGCTTAAGTTGTT+GGG | - | chr1_2:40857273-40857292 | None:intergenic | 35.0% |
| ! | ATCCCAAAAGCTTAAGTTGT+TGG | - | chr1_2:40857274-40857293 | None:intergenic | 35.0% |
| !!! | ACTTAAGCTTTTGGGATAGT+TGG | + | chr1_2:40857277-40857296 | Msa0070370:intron | 35.0% |
| TAAGAAGAAAATGGGAAGCA+AGG | - | chr1_2:40857409-40857428 | None:intergenic | 35.0% | |
| ATGTTGCAGTTGAAACAAGT+AGG | - | chr1_2:40857540-40857559 | None:intergenic | 35.0% | |
| !! | TGCTATACTTTTTGTTTCGC+AGG | + | chr1_2:40857606-40857625 | Msa0070370:intron | 35.0% |
| GATGAAATGAAGGACATCAA+AGG | - | chr1_2:40857989-40858008 | None:intergenic | 35.0% | |
| !! | TTTCATCCTTTGTTGTTCCT+AGG | + | chr1_2:40858002-40858021 | Msa0070370:three_prime_UTR | 35.0% |
| AAAGAACCTAGGAACAACAA+AGG | - | chr1_2:40858011-40858030 | None:intergenic | 35.0% | |
| TTGATGCTTGTAAAGAACCT+AGG | - | chr1_2:40858022-40858041 | None:intergenic | 35.0% | |
| GGTTCTTTACAAGCATCAAA+TGG | + | chr1_2:40858023-40858042 | Msa0070370:three_prime_UTR | 35.0% | |
| ATTAGCATCCACAAGATTCT+CGG | - | chr1_2:40858228-40858247 | None:intergenic | 35.0% | |
| AATGAACCTAAGGAAGCTAA+TGG | + | chr1_2:40858320-40858339 | Msa0070370:three_prime_UTR | 35.0% | |
| ! | ATGGATTGAGAAGTTAGAGA+AGG | - | chr1_2:40858390-40858409 | None:intergenic | 35.0% |
| TGTACAATCTGACGATGTAT+CGG | + | chr1_2:40858460-40858479 | Msa0070370:three_prime_UTR | 35.0% | |
| GCATGCCATCATCATTATTA+TGG | + | chr1_2:40858621-40858640 | Msa0070370:intron | 35.0% | |
| !! | ACTCTGCATGAGCTTTAAAA+TGG | + | chr1_2:40858687-40858706 | Msa0070370:intron | 35.0% |
| AGTAACAAGACATATGAAGC+AGG | - | chr1_2:40858784-40858803 | None:intergenic | 35.0% | |
| TCGACTGAATCCATATTTGT+TGG | + | chr1_2:40858819-40858838 | Msa0070370:intron | 35.0% | |
| AATTTCCATTATCATGCAGC+AGG | - | chr1_2:40858863-40858882 | None:intergenic | 35.0% | |
| TATATAAGGTTCCACTACAC+AGG | + | chr1_2:40858944-40858963 | Msa0070370:intron | 35.0% | |
| ! | TCCACTACACAGGTTTATTT+TGG | + | chr1_2:40858954-40858973 | Msa0070370:intron | 35.0% |
| TCAGTTAAAAGTGGCACTAA+TGG | + | chr1_2:40859196-40859215 | Msa0070370:intron | 35.0% | |
| !! | TGCGACCATCATTTTTCTAT+TGG | + | chr1_2:40859446-40859465 | Msa0070370:intron | 35.0% |
| TACTGGTCCAATCTCATATA+TGG | + | chr1_2:40859535-40859554 | Msa0070370:intron | 35.0% | |
| AGAGAGAGAGAAAACGATGA+TGG | - | chr1_2:40854851-40854870 | None:intergenic | 40.0% | |
| ! | TCATCGTTTTCTCTCTCTCT+TGG | + | chr1_2:40854851-40854870 | Msa0070370:five_prime_UTR | 40.0% |
| ! | GTTTTCTCTCTCTCTTGGTT+AGG | + | chr1_2:40854856-40854875 | Msa0070370:five_prime_UTR | 40.0% |
| ACGAGAAGAAAGAAACGAAG+TGG | - | chr1_2:40854933-40854952 | None:intergenic | 40.0% | |
| ! | TTGAAGTTAGCGTCGGAAAA+CGG | - | chr1_2:40854992-40855011 | None:intergenic | 40.0% |
| !! | TGCCGTTTAGCTTTATACTC+AGG | - | chr1_2:40855225-40855244 | None:intergenic | 40.0% |
| TACGTATCGTGGAACAATAG+TGG | + | chr1_2:40855778-40855797 | Msa0070370:intron | 40.0% | |
| CAACAAAGGGTTACTTAACG+GGG | + | chr1_2:40855877-40855896 | Msa0070370:intron | 40.0% | |
| AACAAAGGGTTACTTAACGG+GGG | + | chr1_2:40855878-40855897 | Msa0070370:intron | 40.0% | |
| ACGGGGGGAATTAGAAATTA+AGG | + | chr1_2:40855894-40855913 | Msa0070370:intron | 40.0% | |
| GATATTGTTAACACCAGTGG+TGG | + | chr1_2:40856065-40856084 | Msa0070370:intron | 40.0% | |
| ACTTGAATATACTTCCCCTG+CGG | + | chr1_2:40856117-40856136 | Msa0070370:intron | 40.0% | |
| ! | CAAATTTTCACCACTGCCTT+AGG | - | chr1_2:40856210-40856229 | None:intergenic | 40.0% |
| TTGTTAGAACCTATGATGCC+TGG | + | chr1_2:40856227-40856246 | Msa0070370:intron | 40.0% | |
| ! | TTGAAGTATCCAGGCATCAT+AGG | - | chr1_2:40856239-40856258 | None:intergenic | 40.0% |
| !!! | CCTCCTATTTTGAAGTATCC+AGG | - | chr1_2:40856248-40856267 | None:intergenic | 40.0% |
| CCTGGATACTTCAAAATAGG+AGG | + | chr1_2:40856245-40856264 | Msa0070370:intron | 40.0% | |
| !! | AATAGGAGGAGTATCTGTGT+CGG | + | chr1_2:40856259-40856278 | Msa0070370:intron | 40.0% |
| GGATACTCCTAGGATACTTA+CGG | + | chr1_2:40856286-40856305 | Msa0070370:intron | 40.0% | |
| TTGTGTGTGTCTTCAAGTGT+AGG | + | chr1_2:40856540-40856559 | Msa0070370:intron | 40.0% | |
| TGTGTGTGTCTTCAAGTGTA+GGG | + | chr1_2:40856541-40856560 | Msa0070370:intron | 40.0% | |
| ! | TTGAAGCGTGGATTGTACAT+AGG | + | chr1_2:40856814-40856833 | Msa0070370:intron | 40.0% |
| TCGTGGTCAATACTCAATAG+GGG | + | chr1_2:40856902-40856921 | Msa0070370:intron | 40.0% | |
| ! | GTGTTATCAGCCTAAGCTTT+TGG | - | chr1_2:40856957-40856976 | None:intergenic | 40.0% |
| GCCCCTTAGTAATTCAACTA+TGG | + | chr1_2:40857070-40857089 | Msa0070370:intron | 40.0% | |
| ! | TTAGAAGAGTACAAGCAGGA+AGG | - | chr1_2:40857137-40857156 | None:intergenic | 40.0% |
| AAATGGGAAGCAAGGAATAC+TGG | - | chr1_2:40857401-40857420 | None:intergenic | 40.0% | |
| TAGACGACCCAAAACTCATT+GGG | + | chr1_2:40857476-40857495 | Msa0070370:CDS | 40.0% | |
| ! | ACATGGTCCCAATGAGTTTT+GGG | - | chr1_2:40857486-40857505 | None:intergenic | 40.0% |
| !! | ACACCATCTCTTCTAAGACA+TGG | - | chr1_2:40857503-40857522 | None:intergenic | 40.0% |
| ATGTCTTAGAAGAGATGGTG+TGG | + | chr1_2:40857502-40857521 | Msa0070370:CDS | 40.0% | |
| GAGGAAATGGAAATTAGCTC+AGG | + | chr1_2:40857642-40857661 | Msa0070370:CDS | 40.0% | |
| !! | GCTTTAAAAGCCAGCAAAGA+AGG | + | chr1_2:40857676-40857695 | Msa0070370:CDS | 40.0% |
| ATCTAACATGCCTTCTTTGC+TGG | - | chr1_2:40857689-40857708 | None:intergenic | 40.0% | |
| CATGTTAGATCCAGCTACAA+GGG | + | chr1_2:40857699-40857718 | Msa0070370:CDS | 40.0% | |
| ATGTTAGATCCAGCTACAAG+GGG | + | chr1_2:40857700-40857719 | Msa0070370:CDS | 40.0% | |
| AAGGGGTGAAAAGAAGATGA+AGG | + | chr1_2:40857717-40857736 | Msa0070370:CDS | 40.0% | |
| ATGAGAACTGCATCTTGTAC+AGG | + | chr1_2:40857831-40857850 | Msa0070370:intron | 40.0% | |
| !!! | TTCTTTTAGGGCAAACTGAG+AGG | + | chr1_2:40858091-40858110 | Msa0070370:three_prime_UTR | 40.0% |
| GCAATAACAAGCAGTCTACT+TGG | + | chr1_2:40858146-40858165 | Msa0070370:intron | 40.0% | |
| ! | TCTGCAGAATTTTTCTCTGC+TGG | - | chr1_2:40858254-40858273 | None:intergenic | 40.0% |
| AACCTAAGGAAGCTAATGGT+GGG | + | chr1_2:40858324-40858343 | Msa0070370:intron | 40.0% | |
| AGAATCTGAGAATGGTCTTC+AGG | - | chr1_2:40858502-40858521 | None:intergenic | 40.0% | |
| AAAGCTCATGCAGAGTGAAA+TGG | - | chr1_2:40858683-40858702 | None:intergenic | 40.0% | |
| AGACATATGAAGCAGGAATC+TGG | - | chr1_2:40858777-40858796 | None:intergenic | 40.0% | |
| ATTATCATGCAGCAGGAATC+TGG | - | chr1_2:40858856-40858875 | None:intergenic | 40.0% | |
| AGATTCCTGCTGCATGATAA+TGG | + | chr1_2:40858855-40858874 | Msa0070370:intron | 40.0% | |
| GCCAAAATAAACCTGTGTAG+TGG | - | chr1_2:40858958-40858977 | None:intergenic | 40.0% | |
| ATGTAGTTGAGTCCCTTTAG+TGG | + | chr1_2:40859105-40859124 | Msa0070370:intron | 40.0% | |
| TGTAGTTGAGTCCCTTTAGT+GGG | + | chr1_2:40859106-40859125 | Msa0070370:intron | 40.0% | |
| TACTTAGCTCAAATCCCTTC+GGG | - | chr1_2:40859237-40859256 | None:intergenic | 40.0% | |
| GTACTTAGCTCAAATCCCTT+CGG | - | chr1_2:40859238-40859257 | None:intergenic | 40.0% | |
| AATACTCTTTCATGCGCAGA+TGG | - | chr1_2:40859425-40859444 | None:intergenic | 40.0% | |
| TCAGATGAGAAAGACGGTAA+TGG | - | chr1_2:40859485-40859504 | None:intergenic | 40.0% | |
| TGTTCCAAATGGGTGAATAC+TGG | + | chr1_2:40859518-40859537 | Msa0070370:intron | 40.0% | |
| AACTAAAGAAGAACGGCAAG+AGG | + | chr1_2:40859614-40859633 | Msa0070370:three_prime_UTR | 40.0% | |
| ! | GAAAGTGTGAGTGAGGAAGA+TGG | - | chr1_2:40854887-40854906 | None:intergenic | 45.0% |
| ! | GAATGGTGAAAGTGTGAGTG+AGG | - | chr1_2:40854894-40854913 | None:intergenic | 45.0% |
| !! | GTTGTGAAGAGCGTTGAGAA+TGG | - | chr1_2:40854911-40854930 | None:intergenic | 45.0% |
| GGAAAACGGTGAGAAGAAGA+AGG | - | chr1_2:40854978-40854997 | None:intergenic | 45.0% | |
| TCGTTCGTTGAAGTTAGCGT+CGG | - | chr1_2:40854999-40855018 | None:intergenic | 45.0% | |
| TCAGGATCAATCTTCGACCT+TGG | - | chr1_2:40855207-40855226 | None:intergenic | 45.0% | |
| ACAAAGGGTTACTTAACGGG+GGG | + | chr1_2:40855879-40855898 | Msa0070370:intron | 45.0% | |
| CTTGAATATACTTCCCCTGC+GGG | + | chr1_2:40856118-40856137 | Msa0070370:intron | 45.0% | |
| ! | CCTTAGGGTTCTAGTCTTTG+AGG | - | chr1_2:40856194-40856213 | None:intergenic | 45.0% |
| CCTCAAAGACTAGAACCCTA+AGG | + | chr1_2:40856191-40856210 | Msa0070370:intron | 45.0% | |
| !! | AGGAGTATCTGTGTCGGTTA+CGG | + | chr1_2:40856265-40856284 | Msa0070370:intron | 45.0% |
| TCAAACTAGCTCCTCGTGAT+TGG | - | chr1_2:40856482-40856501 | None:intergenic | 45.0% | |
| GTGTGTGTCTTCAAGTGTAG+GGG | + | chr1_2:40856542-40856561 | Msa0070370:intron | 45.0% | |
| ACTAGGATCCCATCCCAAAA+GGG | - | chr1_2:40856773-40856792 | None:intergenic | 45.0% | |
| TACTAGGATCCCATCCCAAA+AGG | - | chr1_2:40856774-40856793 | None:intergenic | 45.0% | |
| AAAGGGCTCTTGCATCTACT+AGG | - | chr1_2:40856790-40856809 | None:intergenic | 45.0% | |
| TAGTAGATGCAAGAGCCCTT+TGG | + | chr1_2:40856789-40856808 | Msa0070370:intron | 45.0% | |
| AGTAGATGCAAGAGCCCTTT+GGG | + | chr1_2:40856790-40856809 | Msa0070370:intron | 45.0% | |
| ATCCACGCTTCAAACCCAAA+GGG | - | chr1_2:40856807-40856826 | None:intergenic | 45.0% | |
| AATCCACGCTTCAAACCCAA+AGG | - | chr1_2:40856808-40856827 | None:intergenic | 45.0% | |
| CAAAGCTAGCACAAGGAGTA+AGG | - | chr1_2:40857033-40857052 | None:intergenic | 45.0% | |
| !! | TACTCCTTGTGCTAGCTTTG+AGG | + | chr1_2:40857033-40857052 | Msa0070370:intron | 45.0% |
| TCAACCTCAAAGCTAGCACA+AGG | - | chr1_2:40857040-40857059 | None:intergenic | 45.0% | |
| ACATCCCCTTACTTGAAGCT+TGG | - | chr1_2:40857205-40857224 | None:intergenic | 45.0% | |
| AAGTAAGGGGATGTTGCATG+AGG | + | chr1_2:40857211-40857230 | Msa0070370:intron | 45.0% | |
| TCAGGCTGTTGAAGCTTCAA+GGG | + | chr1_2:40857449-40857468 | Msa0070370:intron | 45.0% | |
| !!! | CAATGAGTTTTGGGTCGTCT+AGG | - | chr1_2:40857477-40857496 | None:intergenic | 45.0% |
| CTAGACGACCCAAAACTCAT+TGG | + | chr1_2:40857475-40857494 | Msa0070370:CDS | 45.0% | |
| ! | GACATGGTCCCAATGAGTTT+TGG | - | chr1_2:40857487-40857506 | None:intergenic | 45.0% |
| GGACCATGTCTTAGAAGAGA+TGG | + | chr1_2:40857497-40857516 | Msa0070370:CDS | 45.0% | |
| AGAGATGGTGTGGCTATCAA+AGG | + | chr1_2:40857512-40857531 | Msa0070370:CDS | 45.0% | |
| ACTTCGAGTCAGAGAGGAAA+TGG | + | chr1_2:40857629-40857648 | Msa0070370:CDS | 45.0% | |
| GCATGTTAGATCCAGCTACA+AGG | + | chr1_2:40857698-40857717 | Msa0070370:CDS | 45.0% | |
| ! | TTCTTTTCACCCCTTGTAGC+TGG | - | chr1_2:40857712-40857731 | None:intergenic | 45.0% |
| TCATCACACAACAGTGCAGT+GGG | - | chr1_2:40857815-40857834 | None:intergenic | 45.0% | |
| TTGTACAGGAAGAAGAGCAG+CGG | + | chr1_2:40857845-40857864 | Msa0070370:intron | 45.0% | |
| TATGTTGGCCGAGAATCTTG+TGG | + | chr1_2:40858217-40858236 | Msa0070370:three_prime_UTR | 45.0% | |
| GAACCTAAGGAAGCTAATGG+TGG | + | chr1_2:40858323-40858342 | Msa0070370:intron | 45.0% | |
| ! | TACCCACCATTAGCTTCCTT+AGG | - | chr1_2:40858329-40858348 | None:intergenic | 45.0% |
| TCATCATGATCAGGTGCATC+AGG | - | chr1_2:40858431-40858450 | None:intergenic | 45.0% | |
| ! | TAACTTGTCTCTCAGAAGCC+CGG | + | chr1_2:40858552-40858571 | Msa0070370:intron | 45.0% |
| GAACACTGACAGGTTCCAAT+TGG | + | chr1_2:40858655-40858674 | Msa0070370:intron | 45.0% | |
| CAGAGTGAAATGGCACCAAT+TGG | - | chr1_2:40858673-40858692 | None:intergenic | 45.0% | |
| ACTTAGCTCAAATCCCTTCG+GGG | - | chr1_2:40859236-40859255 | None:intergenic | 45.0% | |
| CTAAGTACCTTGAAGCTGCA+AGG | + | chr1_2:40859250-40859269 | Msa0070370:intron | 45.0% | |
| TGGACCAGTATTCACCCATT+TGG | - | chr1_2:40859525-40859544 | None:intergenic | 45.0% | |
| AGAAGAACGGCAAGAGGAAT+TGG | + | chr1_2:40859620-40859639 | Msa0070370:three_prime_UTR | 45.0% | |
| !!! | GTTTTATTTTAAAAAAAAAT+CGG | + | chr1_2:40855285-40855304 | Msa0070370:intron | 5.0% |
| ! | GTGAATGCAATGGCGTCGAA+AGG | + | chr1_2:40855180-40855199 | Msa0070370:exon | 50.0% |
| TATATGCTCAACACCCGCAG+GGG | - | chr1_2:40856134-40856153 | None:intergenic | 50.0% | |
| CTATATGCTCAACACCCGCA+GGG | - | chr1_2:40856135-40856154 | None:intergenic | 50.0% | |
| TCTATATGCTCAACACCCGC+AGG | - | chr1_2:40856136-40856155 | None:intergenic | 50.0% | |
| AGACTAGAACCCTAAGGCAG+TGG | + | chr1_2:40856197-40856216 | Msa0070370:intron | 50.0% | |
| ! | TGTCGGTTACGGATACTCCT+AGG | + | chr1_2:40856276-40856295 | Msa0070370:intron | 50.0% |
| GTGTCTTCAAGTGTAGGGGT+TGG | + | chr1_2:40856546-40856565 | Msa0070370:intron | 50.0% | |
| ! | TTGATGGAGATCCCCCCTTT+TGG | + | chr1_2:40856756-40856775 | Msa0070370:intron | 50.0% |
| ! | TGATGGAGATCCCCCCTTTT+GGG | + | chr1_2:40856757-40856776 | Msa0070370:intron | 50.0% |
| TAGGATCCCATCCCAAAAGG+GGG | - | chr1_2:40856771-40856790 | None:intergenic | 50.0% | |
| CTAGGATCCCATCCCAAAAG+GGG | - | chr1_2:40856772-40856791 | None:intergenic | 50.0% | |
| GCAACATGATCGAGCTTTCG+TGG | + | chr1_2:40856885-40856904 | Msa0070370:intron | 50.0% | |
| CTATGGTATCAGAGCCTCTC+TGG | + | chr1_2:40857087-40857106 | Msa0070370:intron | 50.0% | |
| GTCAGGCTGTTGAAGCTTCA+AGG | + | chr1_2:40857448-40857467 | Msa0070370:intron | 50.0% | |
| ATCACACAACAGTGCAGTGG+GGG | - | chr1_2:40857813-40857832 | None:intergenic | 50.0% | |
| CATCACACAACAGTGCAGTG+GGG | - | chr1_2:40857814-40857833 | None:intergenic | 50.0% | |
| CTCATCACACAACAGTGCAG+TGG | - | chr1_2:40857816-40857835 | None:intergenic | 50.0% | |
| CATTTACAACCGTCCCCGAA+GGG | + | chr1_2:40859220-40859239 | Msa0070370:intron | 50.0% | |
| !! | AGCTTAGCCTTGCAGCTTCA+AGG | - | chr1_2:40859260-40859279 | None:intergenic | 50.0% |
| GCGTTTGCTCATCATCATCC+TGG | - | chr1_2:40859572-40859591 | None:intergenic | 50.0% | |
| ! | TGATGATGAGCAAACGCTCG+AGG | + | chr1_2:40859575-40859594 | Msa0070370:three_prime_UTR | 50.0% |
| ! | CAATGGCGTCGAAAGGTCCA+AGG | + | chr1_2:40855187-40855206 | Msa0070370:exon | 55.0% |
| ! | GAGGAGCTAGTTTGAGCCCA+TGG | + | chr1_2:40856487-40856506 | Msa0070370:intron | 55.0% |
| !!! | GAGATCCCCCCTTTTGGGAT+GGG | + | chr1_2:40856762-40856781 | Msa0070370:intron | 55.0% |
| AGGATCCCATCCCAAAAGGG+GGG | - | chr1_2:40856770-40856789 | None:intergenic | 55.0% | |
| ! | AGCCCTTTGGGTTTGAAGCG+TGG | + | chr1_2:40856802-40856821 | Msa0070370:intron | 55.0% |
| ACTCAATCACTGGGCCAGAG+AGG | - | chr1_2:40857104-40857123 | None:intergenic | 55.0% | |
| AGGGGATGTTGCATGAGGAG+AGG | + | chr1_2:40857216-40857235 | Msa0070370:intron | 55.0% | |
| CCTTCGGGGACGGTTGTAAA+TGG | - | chr1_2:40859222-40859241 | None:intergenic | 55.0% | |
| CCATTTACAACCGTCCCCGA+AGG | + | chr1_2:40859219-40859238 | Msa0070370:intron | 55.0% | |
| AGCTCAAATCCCTTCGGGGA+CGG | - | chr1_2:40859232-40859251 | None:intergenic | 55.0% | |
| GCAAACGCTCGAGGAAGATG+AGG | + | chr1_2:40859584-40859603 | Msa0070370:three_prime_UTR | 55.0% | |
| CCTACGGCACTATCGCGTAG+CGG | - | chr1_2:40855581-40855600 | None:intergenic | 60.0% | |
| CGCTACGCGATAGTGCCGTA+GGG | + | chr1_2:40855579-40855598 | Msa0070370:intron | 60.0% | |
| CGGCTATAGCAGCAGCCCTA+CGG | - | chr1_2:40855597-40855616 | None:intergenic | 60.0% | |
| CGCATGTCTGACTCCACCAC+TGG | - | chr1_2:40856081-40856100 | None:intergenic | 60.0% | |
| !! | GGAGATCCCCCCTTTTGGGA+TGG | + | chr1_2:40856761-40856780 | Msa0070370:intron | 60.0% |
| CGCAGGACTTCGAGTCAGAG+AGG | + | chr1_2:40857623-40857642 | Msa0070370:intron | 60.0% | |
| CCGCTACGCGATAGTGCCGT+AGG | + | chr1_2:40855578-40855597 | Msa0070370:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 40854844 | 40859645 | 40854844 | ID=Msa0070370;Name=Msa0070370 |
| chr1_2 | mRNA | 40854844 | 40859645 | 40854844 | ID=Msa0070370-mRNA-1;Parent=Msa0070370;Name=Msa0070370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=230|1|1|1|0.85|0.62|8|439|113 |
| chr1_2 | exon | 40854844 | 40855041 | 40854844 | ID=Msa0070370-mRNA-1:exon:12402;Parent=Msa0070370-mRNA-1 |
| chr1_2 | exon | 40855157 | 40855248 | 40855157 | ID=Msa0070370-mRNA-1:exon:12403;Parent=Msa0070370-mRNA-1 |
| chr1_2 | exon | 40857453 | 40857533 | 40857453 | ID=Msa0070370-mRNA-1:exon:12404;Parent=Msa0070370-mRNA-1 |
| chr1_2 | exon | 40857628 | 40857738 | 40857628 | ID=Msa0070370-mRNA-1:exon:12405;Parent=Msa0070370-mRNA-1 |
| chr1_2 | exon | 40857853 | 40858112 | 40857853 | ID=Msa0070370-mRNA-1:exon:12406;Parent=Msa0070370-mRNA-1 |
| chr1_2 | exon | 40858208 | 40858341 | 40858208 | ID=Msa0070370-mRNA-1:exon:12407;Parent=Msa0070370-mRNA-1 |
| chr1_2 | exon | 40858420 | 40858481 | 40858420 | ID=Msa0070370-mRNA-1:exon:12408;Parent=Msa0070370-mRNA-1 |
| chr1_2 | exon | 40859573 | 40859645 | 40859573 | ID=Msa0070370-mRNA-1:exon:12409;Parent=Msa0070370-mRNA-1 |
| chr1_2 | five_prime_UTR | 40854844 | 40855041 | 40854844 | ID=Msa0070370-mRNA-1:five_prime_utr;Parent=Msa0070370-mRNA-1 |
| chr1_2 | five_prime_UTR | 40855157 | 40855188 | 40855157 | ID=Msa0070370-mRNA-1:five_prime_utr;Parent=Msa0070370-mRNA-1 |
| chr1_2 | CDS | 40855189 | 40855248 | 40855189 | ID=Msa0070370-mRNA-1:cds;Parent=Msa0070370-mRNA-1 |
| chr1_2 | CDS | 40857453 | 40857533 | 40857453 | ID=Msa0070370-mRNA-1:cds;Parent=Msa0070370-mRNA-1 |
| chr1_2 | CDS | 40857628 | 40857738 | 40857628 | ID=Msa0070370-mRNA-1:cds;Parent=Msa0070370-mRNA-1 |
| chr1_2 | CDS | 40857853 | 40857942 | 40857853 | ID=Msa0070370-mRNA-1:cds;Parent=Msa0070370-mRNA-1 |
| chr1_2 | three_prime_UTR | 40857943 | 40858112 | 40857943 | ID=Msa0070370-mRNA-1:three_prime_utr;Parent=Msa0070370-mRNA-1 |
| chr1_2 | three_prime_UTR | 40858208 | 40858341 | 40858208 | ID=Msa0070370-mRNA-1:three_prime_utr;Parent=Msa0070370-mRNA-1 |
| chr1_2 | three_prime_UTR | 40858420 | 40858481 | 40858420 | ID=Msa0070370-mRNA-1:three_prime_utr;Parent=Msa0070370-mRNA-1 |
| chr1_2 | three_prime_UTR | 40859573 | 40859645 | 40859573 | ID=Msa0070370-mRNA-1:three_prime_utr;Parent=Msa0070370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
