Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1020940 | XP_003622929.1 | 86.264 | 182 | 0 | 1 | 82 | 238 | 1 | 182 | 3.38e-102 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1020940 | sp|O48847|LUH_ARATH | 60.000 | 175 | 43 | 3 | 89 | 238 | 2 | 174 | 1.72e-56 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1020940 | G7L191 | 86.264 | 182 | 0 | 1 | 82 | 238 | 1 | 182 | 1.62e-102 | 323 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1020940 | TR | LUG |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa1020940 | 0.817662 | 2.935355e-52 | -8.615850e-47 |
| Msa0035120 | Msa1020940 | 0.805062 | 1.600109e-49 | -8.615850e-47 |
| Msa0054530 | Msa1020940 | 0.862270 | 5.708995e-64 | -8.615850e-47 |
| Msa0054820 | Msa1020940 | 0.814148 | 1.785244e-51 | -8.615850e-47 |
| Msa0056450 | Msa1020940 | 0.812791 | 3.549683e-51 | -8.615850e-47 |
| Msa0061340 | Msa1020940 | 0.819373 | 1.201968e-52 | -8.615850e-47 |
| Msa0064920 | Msa1020940 | 0.840421 | 8.785926e-58 | -8.615850e-47 |
| Msa0070370 | Msa1020940 | 0.806617 | 7.539305e-50 | -8.615850e-47 |
| Msa0082440 | Msa1020940 | 0.809030 | 2.314471e-50 | -8.615850e-47 |
| Msa0089980 | Msa1020940 | 0.823232 | 1.547766e-53 | -8.615850e-47 |
| Msa0090010 | Msa1020940 | 0.815757 | 7.850913e-52 | -8.615850e-47 |
| Msa0091780 | Msa1020940 | 0.832660 | 8.327873e-56 | -8.615850e-47 |
| Msa0094130 | Msa1020940 | 0.812571 | 3.964068e-51 | -8.615850e-47 |
| Msa0102270 | Msa1020940 | 0.801101 | 1.055435e-48 | -8.615850e-47 |
| Msa0116790 | Msa1020940 | 0.820567 | 6.408494e-53 | -8.615850e-47 |
| Msa0626270 | Msa1020940 | 0.831348 | 1.757006e-55 | -8.615850e-47 |
| Msa0642720 | Msa1020940 | 0.807448 | 5.030206e-50 | -8.615850e-47 |
| Msa0657750 | Msa1020940 | 0.817283 | 3.573207e-52 | -8.615850e-47 |
| Msa0661320 | Msa1020940 | 0.817282 | 3.575539e-52 | -8.615850e-47 |
| Msa0663250 | Msa1020940 | 0.802333 | 5.895766e-49 | -8.615850e-47 |
| Msa0664540 | Msa1020940 | 0.810419 | 1.163562e-50 | -8.615850e-47 |
| Msa0687450 | Msa1020940 | 0.835984 | 1.220697e-56 | -8.615850e-47 |
| Msa0689760 | Msa1020940 | 0.848175 | 7.244746e-60 | -8.615850e-47 |
| Msa0691340 | Msa1020940 | 0.810191 | 1.303070e-50 | -8.615850e-47 |
| Msa0698100 | Msa1020940 | 0.818322 | 2.082189e-52 | -8.615850e-47 |
| Msa0716860 | Msa1020940 | 0.843552 | 1.306467e-58 | -8.615850e-47 |
| Msa0749400 | Msa1020940 | 0.833519 | 5.090517e-56 | -8.615850e-47 |
| Msa0757800 | Msa1020940 | 0.835253 | 1.868444e-56 | -8.615850e-47 |
| Msa0760770 | Msa1020940 | 0.845033 | 5.225473e-59 | -8.615850e-47 |
| Msa0780280 | Msa1020940 | 0.801083 | 1.064547e-48 | -8.615850e-47 |
| Msa0789560 | Msa1020940 | 0.818431 | 1.966963e-52 | -8.615850e-47 |
| Msa0800700 | Msa1020940 | 0.814260 | 1.686338e-51 | -8.615850e-47 |
| Msa0828920 | Msa1020940 | 0.824412 | 8.187332e-54 | -8.615850e-47 |
| Msa0126230 | Msa1020940 | 0.828695 | 7.792821e-55 | -8.615850e-47 |
| Msa0133720 | Msa1020940 | 0.806830 | 6.799905e-50 | -8.615850e-47 |
| Msa0133820 | Msa1020940 | 0.823293 | 1.497548e-53 | -8.615850e-47 |
| Msa0137540 | Msa1020940 | 0.800051 | 1.727623e-48 | -8.615850e-47 |
| Msa0138210 | Msa1020940 | 0.811230 | 7.767314e-51 | -8.615850e-47 |
| Msa0138950 | Msa1020940 | 0.809341 | 1.985103e-50 | -8.615850e-47 |
| Msa0143850 | Msa1020940 | 0.803195 | 3.914704e-49 | -8.615850e-47 |
| Msa0144360 | Msa1020940 | 0.818721 | 1.690445e-52 | -8.615850e-47 |
| Msa0152400 | Msa1020940 | 0.833330 | 5.674196e-56 | -8.615850e-47 |
| Msa0183420 | Msa1020940 | 0.800239 | 1.582282e-48 | -8.615850e-47 |
| Msa0236770 | Msa1020940 | 0.822472 | 2.325944e-53 | -8.615850e-47 |
| Msa0379610 | Msa1020940 | 0.816768 | 4.664220e-52 | -8.615850e-47 |
| Msa0387950 | Msa1020940 | 0.814667 | 1.370722e-51 | -8.615850e-47 |
| Msa0395980 | Msa1020940 | 0.824691 | 7.035807e-54 | -8.615850e-47 |
| Msa0410870 | Msa1020940 | 0.803584 | 3.251390e-49 | -8.615850e-47 |
| Msa0411410 | Msa1020940 | 0.803685 | 3.098593e-49 | -8.615850e-47 |
| Msa0423840 | Msa1020940 | 0.841605 | 4.294776e-58 | -8.615850e-47 |
| Msa0431410 | Msa1020940 | 0.804430 | 2.168294e-49 | -8.615850e-47 |
| Msa0433610 | Msa1020940 | 0.815080 | 1.110133e-51 | -8.615850e-47 |
| Msa0468250 | Msa1020940 | 0.808338 | 3.252317e-50 | -8.615850e-47 |
| Msa0473980 | Msa1020940 | 0.802073 | 6.670948e-49 | -8.615850e-47 |
| Msa0996020 | Msa1020940 | 0.806497 | 7.993188e-50 | -8.615850e-47 |
| Msa1010070 | Msa1020940 | 0.818288 | 2.119906e-52 | -8.615850e-47 |
| Msa1020940 | Msa1050910 | 0.809293 | 2.032580e-50 | -8.615850e-47 |
| Msa1020940 | Msa1050960 | 0.813055 | 3.106225e-51 | -8.615850e-47 |
| Msa1020940 | Msa1059960 | 0.803903 | 2.792010e-49 | -8.615850e-47 |
| Msa1020940 | Msa1067140 | 0.809209 | 2.119037e-50 | -8.615850e-47 |
| Msa1020940 | Msa1072600 | 0.823098 | 1.662886e-53 | -8.615850e-47 |
| Msa1020940 | Msa1084950 | 0.802864 | 4.583356e-49 | -8.615850e-47 |
| Msa1020940 | Msa1095790 | 0.860102 | 2.609077e-63 | -8.615850e-47 |
| Msa1020940 | Msa1098890 | 0.802568 | 5.274323e-49 | -8.615850e-47 |
| Msa1020940 | Msa1201640 | 0.823936 | 1.059158e-53 | -8.615850e-47 |
| Msa1020940 | Msa1211340 | 0.840008 | 1.126306e-57 | -8.615850e-47 |
| Msa1020940 | Msa1217670 | 0.807332 | 5.322829e-50 | -8.615850e-47 |
| Msa1020940 | Msa1254620 | 0.830161 | 3.431613e-55 | -8.615850e-47 |
| Msa1020940 | Msa1259640 | 0.839481 | 1.544116e-57 | -8.615850e-47 |
| Msa1020940 | Msa1282500 | 0.804244 | 2.370955e-49 | -8.615850e-47 |
| Msa1020940 | Msa1328640 | 0.821313 | 4.313870e-53 | -8.615850e-47 |
| Msa1020940 | Msa1329790 | 0.840213 | 9.956100e-58 | -8.615850e-47 |
| Msa1020940 | Msa1338250 | 0.806599 | 7.607820e-50 | -8.615850e-47 |
| Msa1020940 | Msa1348360 | 0.811040 | 8.540555e-51 | -8.615850e-47 |
| Msa1020940 | Msa1393820 | 0.830384 | 3.027218e-55 | -8.615850e-47 |
| Msa1020940 | Msa1409950 | 0.806778 | 6.972214e-50 | -8.615850e-47 |
| Msa1020940 | Msa1418260 | 0.838884 | 2.205544e-57 | -8.615850e-47 |
| Msa1020940 | Msa1420250 | 0.847625 | 1.027378e-59 | -8.615850e-47 |
| Msa1020940 | Msa1426910 | 0.834573 | 2.771981e-56 | -8.615850e-47 |
| Msa1020940 | Msa1435260 | 0.855365 | 6.624328e-62 | -8.615850e-47 |
| Msa1020940 | Msa1439610 | 0.816144 | 6.435318e-52 | -8.615850e-47 |
| Msa1020940 | Msa1443310 | 0.828725 | 7.661849e-55 | -8.615850e-47 |
| Msa1020940 | Msa1463010 | 0.813637 | 2.314128e-51 | -8.615850e-47 |
| Msa1020940 | Msa1464370 | 0.823025 | 1.729416e-53 | -8.615850e-47 |
| Msa1020940 | Msa1466590 | 0.814844 | 1.252378e-51 | -8.615850e-47 |
| Msa1020940 | Msa1467000 | 0.828526 | 8.560628e-55 | -8.615850e-47 |
| Msa0251270 | Msa1020940 | 0.812083 | 5.068052e-51 | -8.615850e-47 |
| Msa0279390 | Msa1020940 | 0.851267 | 9.917840e-61 | -8.615850e-47 |
| Msa0281360 | Msa1020940 | 0.809168 | 2.161602e-50 | -8.615850e-47 |
| Msa0302890 | Msa1020940 | 0.844123 | 9.188454e-59 | -8.615850e-47 |
| Msa0305330 | Msa1020940 | 0.814622 | 1.403109e-51 | -8.615850e-47 |
| Msa0307860 | Msa1020940 | 0.831249 | 1.857513e-55 | -8.615850e-47 |
| Msa0318880 | Msa1020940 | 0.868283 | 7.327780e-66 | -8.615850e-47 |
| Msa0343300 | Msa1020940 | 0.822886 | 1.863797e-53 | -8.615850e-47 |
| Msa0358400 | Msa1020940 | 0.828864 | 7.092768e-55 | -8.615850e-47 |
| Msa0362890 | Msa1020940 | 0.826395 | 2.776977e-54 | -8.615850e-47 |
| Msa0363400 | Msa1020940 | 0.838205 | 3.301458e-57 | -8.615850e-47 |
| Msa0363810 | Msa1020940 | 0.802178 | 6.344937e-49 | -8.615850e-47 |
| Msa0510290 | Msa1020940 | 0.810973 | 8.830019e-51 | -8.615850e-47 |
| Msa0518960 | Msa1020940 | 0.815975 | 7.016295e-52 | -8.615850e-47 |
| Msa0576680 | Msa1020940 | 0.809656 | 1.698952e-50 | -8.615850e-47 |
| Msa0597770 | Msa1020940 | 0.801857 | 7.385631e-49 | -8.615850e-47 |
| Msa0868160 | Msa1020940 | 0.818357 | 2.044248e-52 | -8.615850e-47 |
| Msa0969330 | Msa1020940 | 0.827890 | 1.218202e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1020940 | MtrunA17_Chr7g0237271 | 86.264 | 182 | 0 | 1 | 82 | 238 | 1 | 182 | 3.11e-106 | 323 |
| Msa1020940 | MtrunA17_Chr7g0237241 | 76.923 | 182 | 8 | 2 | 82 | 238 | 1 | 173 | 7.80e-83 | 262 |
| Msa1020940 | MtrunA17_Chr1g0171711 | 56.818 | 176 | 48 | 6 | 89 | 238 | 2 | 175 | 2.35e-51 | 177 |
| Msa1020940 | MtrunA17_Chr3g0138311 | 80.357 | 56 | 11 | 0 | 89 | 144 | 2 | 57 | 1.50e-26 | 107 |
| Msa1020940 | MtrunA17_Chr1g0148791 | 80.357 | 56 | 11 | 0 | 89 | 144 | 2 | 57 | 2.10e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1020940 | AT2G32700.2 | 60.000 | 175 | 43 | 3 | 89 | 238 | 2 | 174 | 1.75e-57 | 195 |
| Msa1020940 | AT2G32700.5 | 60.000 | 175 | 43 | 3 | 89 | 238 | 2 | 174 | 1.75e-57 | 195 |
| Msa1020940 | AT2G32700.1 | 60.000 | 175 | 43 | 3 | 89 | 238 | 2 | 174 | 1.75e-57 | 195 |
| Msa1020940 | AT2G32700.4 | 60.000 | 175 | 43 | 3 | 89 | 238 | 2 | 174 | 1.75e-57 | 195 |
| Msa1020940 | AT2G32700.3 | 60.000 | 175 | 43 | 3 | 89 | 238 | 2 | 174 | 1.75e-57 | 195 |
| Msa1020940 | AT2G32700.6 | 60.000 | 175 | 43 | 3 | 89 | 238 | 2 | 174 | 1.94e-57 | 195 |
| Msa1020940 | AT2G32700.7 | 60.000 | 175 | 43 | 3 | 89 | 238 | 2 | 174 | 2.07e-57 | 195 |
| Msa1020940 | AT4G32551.1 | 82.143 | 56 | 10 | 0 | 89 | 144 | 2 | 57 | 3.92e-27 | 109 |
| Msa1020940 | AT4G32551.2 | 82.143 | 56 | 10 | 0 | 89 | 144 | 2 | 57 | 4.31e-27 | 109 |
Find 43 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGAACAGCGAGAAAATC+TGG | 0.243056 | 7_1:+45012423 | None:intergenic |
| TGGGTCAAGCTCAAAGTAAT+TGG | 0.252250 | 7_1:-45011667 | Msa1020940:CDS |
| CTATTTGCATCAATAAGATT+TGG | 0.330561 | 7_1:+45010399 | None:intergenic |
| AAGAAACTTGTGGTATGATA+TGG | 0.333482 | 7_1:+45011722 | None:intergenic |
| TTCATGGCCAATGCACTTGC+TGG | 0.354921 | 7_1:+45010474 | None:intergenic |
| CCACCCAGTCCAGGATGATT+AGG | 0.373675 | 7_1:+45010540 | None:intergenic |
| CAACATACCTTCAGAGTTCA+TGG | 0.387665 | 7_1:+45010506 | None:intergenic |
| ACCACAAGTTTCTTTGAAGT+TGG | 0.394336 | 7_1:-45011713 | Msa1020940:CDS |
| GCACTCAAATTCATACATAA+AGG | 0.398122 | 7_1:-45012366 | Msa1020940:intron |
| ATGAACTCTGAAGGTATGTT+GGG | 0.414053 | 7_1:-45010504 | Msa1020940:CDS |
| CCACAAGTTTCTTTGAAGTT+GGG | 0.418375 | 7_1:-45011712 | Msa1020940:CDS |
| GTCAGTATGAAGCCAACTTT+GGG | 0.420214 | 7_1:-45011686 | Msa1020940:CDS |
| TGTCAGTATGAAGCCAACTT+TGG | 0.431563 | 7_1:-45011687 | Msa1020940:CDS |
| GGGTCAAGCTCAAAGTAATT+GGG | 0.439675 | 7_1:-45011666 | Msa1020940:CDS |
| AATGAAACACCCTCATTCAA+TGG | 0.448834 | 7_1:-45010436 | Msa1020940:CDS |
| CTTTGAGCTTGACCCAAAGT+TGG | 0.484960 | 7_1:+45011674 | None:intergenic |
| CATGAACTCTGAAGGTATGT+TGG | 0.492726 | 7_1:-45010505 | Msa1020940:CDS |
| AGATCCTAATCATCCTGGAC+TGG | 0.494987 | 7_1:-45010544 | Msa1020940:CDS |
| TCTTATTGATGCAAATAGAA+TGG | 0.502350 | 7_1:-45010394 | Msa1020940:CDS |
| CTGGAGGATTTCTGTTTGAG+TGG | 0.509340 | 7_1:-45011200 | Msa1020940:CDS |
| CGAAGAGATCCTAATCATCC+TGG | 0.509773 | 7_1:-45010549 | Msa1020940:CDS |
| AAATCAGCAACAAGTCATCA+AGG | 0.513351 | 7_1:-45010363 | Msa1020940:CDS |
| GCAGCCACCAGCAAGTGCAT+TGG | 0.523196 | 7_1:-45010481 | Msa1020940:CDS |
| TTCAAAGAACCACCCAGTCC+AGG | 0.526740 | 7_1:+45010531 | None:intergenic |
| GTGGATGGAATTATGGAACT+TGG | 0.532065 | 7_1:+45012464 | None:intergenic |
| ATGGCCAATGCACTTGCTGG+TGG | 0.533520 | 7_1:+45010477 | None:intergenic |
| GATCCTAATCATCCTGGACT+GGG | 0.546709 | 7_1:-45010543 | Msa1020940:CDS |
| ACATCTGAATCCATTGAATG+AGG | 0.547319 | 7_1:+45010426 | None:intergenic |
| AACATACCTTCAGAGTTCAT+GGG | 0.549284 | 7_1:+45010507 | None:intergenic |
| AGAGAACAGCGAGAAAATCT+GGG | 0.554418 | 7_1:+45012424 | None:intergenic |
| TTGAACCCCATGAACTCTGA+AGG | 0.565456 | 7_1:-45010513 | Msa1020940:CDS |
| GAGGATTTCTGTTTGAGTGG+TGG | 0.572454 | 7_1:-45011197 | Msa1020940:CDS |
| CATCTGAATCCATTGAATGA+GGG | 0.576618 | 7_1:+45010427 | None:intergenic |
| TTGATAGCAATTGATGCACC+TGG | 0.581055 | 7_1:-45011219 | Msa1020940:intron |
| CACTCAAACAGAAATCCTCC+AGG | 0.604315 | 7_1:+45011201 | None:intergenic |
| AATCAGCAACAAGTCATCAA+GGG | 0.625746 | 7_1:-45010362 | Msa1020940:CDS |
| CCTAATCATCCTGGACTGGG+TGG | 0.629932 | 7_1:-45010540 | Msa1020940:CDS |
| AAGGTTTCAACTGATCCAGT+AGG | 0.634552 | 7_1:-45011440 | Msa1020940:intron |
| CCCAACTTCAAAGAAACTTG+TGG | 0.634695 | 7_1:+45011712 | None:intergenic |
| ACATACCTTCAGAGTTCATG+GGG | 0.646193 | 7_1:+45010508 | None:intergenic |
| TTGGTAGACACAGCAAACAA+AGG | 0.669557 | 7_1:-45010634 | Msa1020940:intron |
| TGAACTCTGAAGGTATGTTG+GGG | 0.670256 | 7_1:-45010503 | Msa1020940:CDS |
| ATAGCAATTGATGCACCTGG+AGG | 0.686315 | 7_1:-45011216 | Msa1020940:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAGTTTAATTATTTTTATTA+TGG | - | chr7_1:45011065-45011084 | Msa1020940:intron | 10.0% |
| !!! | GAGTTTAATTATTTTTATTA+TGG | - | chr7_1:45011065-45011084 | Msa1020940:intron | 10.0% |
| !!! | AATTTTTGTGTAATTATGAA+AGG | - | chr7_1:45010961-45010980 | Msa1020940:intron | 15.0% |
| !! | AATAACTAACACTATATATA+TGG | + | chr7_1:45012013-45012032 | None:intergenic | 15.0% |
| !!! | GTGTTAGTTATTTTAAATAT+TGG | - | chr7_1:45012021-45012040 | Msa1020940:intron | 15.0% |
| !!! | TAGTTATTTTAAATATTGGA+AGG | - | chr7_1:45012025-45012044 | Msa1020940:intron | 15.0% |
| !! | TATTATATGAATTTGTATGT+TGG | - | chr7_1:45012248-45012267 | Msa1020940:intron | 15.0% |
| !!! | AATTTTTGTGTAATTATGAA+AGG | - | chr7_1:45010961-45010980 | Msa1020940:intron | 15.0% |
| !! | AATAACTAACACTATATATA+TGG | + | chr7_1:45012013-45012032 | None:intergenic | 15.0% |
| !!! | GTGTTAGTTATTTTAAATAT+TGG | - | chr7_1:45012021-45012040 | Msa1020940:intron | 15.0% |
| !!! | TAGTTATTTTAAATATTGGA+AGG | - | chr7_1:45012025-45012044 | Msa1020940:intron | 15.0% |
| !! | TATTATATGAATTTGTATGT+TGG | - | chr7_1:45012248-45012267 | Msa1020940:intron | 15.0% |
| !! | TTCAAGAGAAGAAATAAAAA+TGG | + | chr7_1:45010563-45010582 | None:intergenic | 20.0% |
| !!! | TTTATTTCTTCTCTTGAAAT+TGG | - | chr7_1:45010565-45010584 | Msa1020940:CDS | 20.0% |
| !!! | TTATTTCTTCTCTTGAAATT+GGG | - | chr7_1:45010566-45010585 | Msa1020940:CDS | 20.0% |
| !! | TTAAGCAAAATTAACTATGA+GGG | + | chr7_1:45010597-45010616 | None:intergenic | 20.0% |
| !! | ATTAAGCAAAATTAACTATG+AGG | + | chr7_1:45010598-45010617 | None:intergenic | 20.0% |
| !!! | TTGGTGATTTTTTTTTTTGA+AGG | - | chr7_1:45010861-45010880 | Msa1020940:intron | 20.0% |
| !!! | TTTTTTTGAAGGAATGTAAT+TGG | - | chr7_1:45010872-45010891 | Msa1020940:intron | 20.0% |
| !! | AAATGAGAAAGAAAATTGTT+TGG | - | chr7_1:45011043-45011062 | Msa1020940:intron | 20.0% |
| !!! | TGATTGATTTTCATGTTTAA+AGG | - | chr7_1:45011120-45011139 | Msa1020940:intron | 20.0% |
| !!! | TTTATTTGATTTTGGTTTTG+AGG | - | chr7_1:45011317-45011336 | Msa1020940:intron | 20.0% |
| !!! | ATGATTATTTTCTCAAAAGA+AGG | - | chr7_1:45011402-45011421 | Msa1020940:intron | 20.0% |
| !!! | TTAATTTGTCGTAAAGAATT+AGG | - | chr7_1:45011528-45011547 | Msa1020940:intron | 20.0% |
| !!! | TATTTTTCTTTTCTAGCTTA+AGG | - | chr7_1:45011859-45011878 | Msa1020940:intron | 20.0% |
| !! | GTATCTATATATGTAAGATT+TGG | + | chr7_1:45011968-45011987 | None:intergenic | 20.0% |
| !! | TTCAAGAGAAGAAATAAAAA+TGG | + | chr7_1:45010563-45010582 | None:intergenic | 20.0% |
| !!! | TTTATTTCTTCTCTTGAAAT+TGG | - | chr7_1:45010565-45010584 | Msa1020940:CDS | 20.0% |
| !!! | TTATTTCTTCTCTTGAAATT+GGG | - | chr7_1:45010566-45010585 | Msa1020940:CDS | 20.0% |
| !! | TTAAGCAAAATTAACTATGA+GGG | + | chr7_1:45010597-45010616 | None:intergenic | 20.0% |
| !! | ATTAAGCAAAATTAACTATG+AGG | + | chr7_1:45010598-45010617 | None:intergenic | 20.0% |
| !!! | TTGGTGATTTTTTTTTTTGA+AGG | - | chr7_1:45010861-45010880 | Msa1020940:intron | 20.0% |
| !!! | TTTTTTTGAAGGAATGTAAT+TGG | - | chr7_1:45010872-45010891 | Msa1020940:intron | 20.0% |
| !! | AAATGAGAAAGAAAATTGTT+TGG | - | chr7_1:45011043-45011062 | Msa1020940:intron | 20.0% |
| !!! | TGATTGATTTTCATGTTTAA+AGG | - | chr7_1:45011120-45011139 | Msa1020940:intron | 20.0% |
| !!! | TTTATTTGATTTTGGTTTTG+AGG | - | chr7_1:45011317-45011336 | Msa1020940:intron | 20.0% |
| !!! | ATGATTATTTTCTCAAAAGA+AGG | - | chr7_1:45011402-45011421 | Msa1020940:intron | 20.0% |
| !!! | TTAATTTGTCGTAAAGAATT+AGG | - | chr7_1:45011528-45011547 | Msa1020940:intron | 20.0% |
| !!! | TATTTTTCTTTTCTAGCTTA+AGG | - | chr7_1:45011859-45011878 | Msa1020940:intron | 20.0% |
| !! | GTATCTATATATGTAAGATT+TGG | + | chr7_1:45011968-45011987 | None:intergenic | 20.0% |
| !! | TGCTTAATTTTGTGTTTTCA+TGG | - | chr7_1:45010610-45010629 | Msa1020940:CDS | 25.0% |
| !!! | TTAGTTGTGTTTTTGTATCA+CGG | - | chr7_1:45010635-45010654 | Msa1020940:intron | 25.0% |
| !!! | ATTTTTGTGAAAGTTGATGA+TGG | - | chr7_1:45010827-45010846 | Msa1020940:intron | 25.0% |
| ! | TTTGTGTAATTATGAAAGGA+TGG | - | chr7_1:45010965-45010984 | Msa1020940:intron | 25.0% |
| ! | AAGTGAAAGAAACAGAATTT+GGG | - | chr7_1:45011007-45011026 | Msa1020940:intron | 25.0% |
| !!! | TGGTTGATTTTCTTGTTTAA+TGG | - | chr7_1:45011085-45011104 | Msa1020940:intron | 25.0% |
| !!! | GATCATGGTTTATTTGATTT+TGG | - | chr7_1:45011309-45011328 | Msa1020940:intron | 25.0% |
| ! | CGTAAAGAATTAGGTTAAAT+TGG | - | chr7_1:45011537-45011556 | Msa1020940:intron | 25.0% |
| !!! | TTTTTTGTTAAAGCTGAAAG+TGG | - | chr7_1:45011609-45011628 | Msa1020940:intron | 25.0% |
| ! | ACTAACACTATATATATGGA+TGG | + | chr7_1:45012009-45012028 | None:intergenic | 25.0% |
| ! | ACATTCAAAAGAACTAAAAG+TGG | + | chr7_1:45012199-45012218 | None:intergenic | 25.0% |
| !!! | CTTTTAGTTCTTTTGAATGT+TGG | - | chr7_1:45012199-45012218 | Msa1020940:intron | 25.0% |
| ! | CTATTTGCATCAATAAGATT+TGG | + | chr7_1:45012505-45012524 | None:intergenic | 25.0% |
| ! | TCTTATTGATGCAAATAGAA+TGG | - | chr7_1:45012507-45012526 | Msa1020940:CDS | 25.0% |
| !! | TGCTTAATTTTGTGTTTTCA+TGG | - | chr7_1:45010610-45010629 | Msa1020940:CDS | 25.0% |
| !!! | TTAGTTGTGTTTTTGTATCA+CGG | - | chr7_1:45010635-45010654 | Msa1020940:intron | 25.0% |
| !!! | ATTTTTGTGAAAGTTGATGA+TGG | - | chr7_1:45010827-45010846 | Msa1020940:intron | 25.0% |
| ! | TTTGTGTAATTATGAAAGGA+TGG | - | chr7_1:45010965-45010984 | Msa1020940:intron | 25.0% |
| ! | AAGTGAAAGAAACAGAATTT+GGG | - | chr7_1:45011007-45011026 | Msa1020940:intron | 25.0% |
| !!! | TGGTTGATTTTCTTGTTTAA+TGG | - | chr7_1:45011085-45011104 | Msa1020940:intron | 25.0% |
| !!! | GATCATGGTTTATTTGATTT+TGG | - | chr7_1:45011309-45011328 | Msa1020940:intron | 25.0% |
| ! | CGTAAAGAATTAGGTTAAAT+TGG | - | chr7_1:45011537-45011556 | Msa1020940:intron | 25.0% |
| !!! | TTTTTTGTTAAAGCTGAAAG+TGG | - | chr7_1:45011609-45011628 | Msa1020940:intron | 25.0% |
| ! | ACTAACACTATATATATGGA+TGG | + | chr7_1:45012009-45012028 | None:intergenic | 25.0% |
| ! | ACATTCAAAAGAACTAAAAG+TGG | + | chr7_1:45012199-45012218 | None:intergenic | 25.0% |
| !!! | CTTTTAGTTCTTTTGAATGT+TGG | - | chr7_1:45012199-45012218 | Msa1020940:intron | 25.0% |
| ! | CTATTTGCATCAATAAGATT+TGG | + | chr7_1:45012505-45012524 | None:intergenic | 25.0% |
| ! | TCTTATTGATGCAAATAGAA+TGG | - | chr7_1:45012507-45012526 | Msa1020940:CDS | 25.0% |
| ! | AGAAAATCTGGGAATTTTCT+CGG | + | chr7_1:45010469-45010488 | None:intergenic | 30.0% |
| GCACTCAAATTCATACATAA+AGG | - | chr7_1:45010535-45010554 | Msa1020940:CDS | 30.0% | |
| !! | TAGTTGTGTTTTTGTATCAC+GGG | - | chr7_1:45010636-45010655 | Msa1020940:intron | 30.0% |
| TCTTGTACAATTGTGAAAGA+TGG | - | chr7_1:45010709-45010728 | Msa1020940:intron | 30.0% | |
| !! | GATGATGGTTTTTGTGTAAT+TGG | - | chr7_1:45010842-45010861 | Msa1020940:intron | 30.0% |
| TGAAAGGATGGTTAGAATTT+AGG | - | chr7_1:45010977-45010996 | Msa1020940:intron | 30.0% | |
| GAAAGGATGGTTAGAATTTA+GGG | - | chr7_1:45010978-45010997 | Msa1020940:intron | 30.0% | |
| GAAGTGAAAGAAACAGAATT+TGG | - | chr7_1:45011006-45011025 | Msa1020940:intron | 30.0% | |
| AAGAAACTTGTGGTATGATA+TGG | + | chr7_1:45011182-45011201 | None:intergenic | 30.0% | |
| !! | GTTGCTCATGAATTTGTTTT+TGG | - | chr7_1:45011275-45011294 | Msa1020940:intron | 30.0% |
| ! | ATAGTCCAGTTCATTGTTTT+AGG | - | chr7_1:45011570-45011589 | Msa1020940:intron | 30.0% |
| GATGAATATATCCCAAAAGA+CGG | + | chr7_1:45011731-45011750 | None:intergenic | 30.0% | |
| ACACTATATATATGGATGGA+GGG | + | chr7_1:45012005-45012024 | None:intergenic | 30.0% | |
| AACACTATATATATGGATGG+AGG | + | chr7_1:45012006-45012025 | None:intergenic | 30.0% | |
| ! | TAGTTCTTTTGAATGTTGGT+TGG | - | chr7_1:45012203-45012222 | Msa1020940:intron | 30.0% |
| ! | TCGTTCTTCATACATTTTCA+TGG | + | chr7_1:45012446-45012465 | None:intergenic | 30.0% |
| ! | AGAAAATCTGGGAATTTTCT+CGG | + | chr7_1:45010469-45010488 | None:intergenic | 30.0% |
| GCACTCAAATTCATACATAA+AGG | - | chr7_1:45010535-45010554 | Msa1020940:CDS | 30.0% | |
| !! | TAGTTGTGTTTTTGTATCAC+GGG | - | chr7_1:45010636-45010655 | Msa1020940:intron | 30.0% |
| TCTTGTACAATTGTGAAAGA+TGG | - | chr7_1:45010709-45010728 | Msa1020940:intron | 30.0% | |
| !! | GATGATGGTTTTTGTGTAAT+TGG | - | chr7_1:45010842-45010861 | Msa1020940:intron | 30.0% |
| TGAAAGGATGGTTAGAATTT+AGG | - | chr7_1:45010977-45010996 | Msa1020940:intron | 30.0% | |
| GAAAGGATGGTTAGAATTTA+GGG | - | chr7_1:45010978-45010997 | Msa1020940:intron | 30.0% | |
| GAAGTGAAAGAAACAGAATT+TGG | - | chr7_1:45011006-45011025 | Msa1020940:intron | 30.0% | |
| AAGAAACTTGTGGTATGATA+TGG | + | chr7_1:45011182-45011201 | None:intergenic | 30.0% | |
| !! | GTTGCTCATGAATTTGTTTT+TGG | - | chr7_1:45011275-45011294 | Msa1020940:intron | 30.0% |
| ! | ATAGTCCAGTTCATTGTTTT+AGG | - | chr7_1:45011570-45011589 | Msa1020940:intron | 30.0% |
| GATGAATATATCCCAAAAGA+CGG | + | chr7_1:45011731-45011750 | None:intergenic | 30.0% | |
| ACACTATATATATGGATGGA+GGG | + | chr7_1:45012005-45012024 | None:intergenic | 30.0% | |
| AACACTATATATATGGATGG+AGG | + | chr7_1:45012006-45012025 | None:intergenic | 30.0% | |
| ! | TAGTTCTTTTGAATGTTGGT+TGG | - | chr7_1:45012203-45012222 | Msa1020940:intron | 30.0% |
| ! | TCGTTCTTCATACATTTTCA+TGG | + | chr7_1:45012446-45012465 | None:intergenic | 30.0% |
| GGAAAAAGTGGATGGAATTA+TGG | + | chr7_1:45010447-45010466 | None:intergenic | 35.0% | |
| ! | GAAAATCTGGGAATTTTCTC+GGG | + | chr7_1:45010468-45010487 | None:intergenic | 35.0% |
| GCAAAATTAACTATGAGGGT+AGG | + | chr7_1:45010593-45010612 | None:intergenic | 35.0% | |
| !! | AGTTGTGTTTTTGTATCACG+GGG | - | chr7_1:45010637-45010656 | Msa1020940:intron | 35.0% |
| ! | GTGATTTAAGGTTTGATCCA+AGG | - | chr7_1:45010662-45010681 | Msa1020940:intron | 35.0% |
| AAAACATACAAGAAGCTCCT+TGG | + | chr7_1:45010682-45010701 | None:intergenic | 35.0% | |
| !! | ACCACAAGTTTCTTTGAAGT+TGG | - | chr7_1:45011188-45011207 | Msa1020940:intron | 35.0% |
| !! | CCACAAGTTTCTTTGAAGTT+GGG | - | chr7_1:45011189-45011208 | Msa1020940:intron | 35.0% |
| TTGGTTTCTGTGTTTGATCA+TGG | - | chr7_1:45011294-45011313 | Msa1020940:intron | 35.0% | |
| ! | TGTTTGTCTTGTTATGCTTC+AGG | - | chr7_1:45011363-45011382 | Msa1020940:intron | 35.0% |
| ! | GTTGTTAGTTTCTTACCTAC+TGG | + | chr7_1:45011479-45011498 | None:intergenic | 35.0% |
| AGCATCCTAAAACAATGAAC+TGG | + | chr7_1:45011578-45011597 | None:intergenic | 35.0% | |
| !! | AACAAATGAGAAGCATTCTG+AGG | - | chr7_1:45011756-45011775 | Msa1020940:intron | 35.0% |
| ! | TTTCGCTAGAGTATGTTTTG+AGG | - | chr7_1:45011828-45011847 | Msa1020940:intron | 35.0% |
| !! | TTCGCTAGAGTATGTTTTGA+GGG | - | chr7_1:45011829-45011848 | Msa1020940:intron | 35.0% |
| ! | TATATATGGATGGAGGGTTT+TGG | + | chr7_1:45011999-45012018 | None:intergenic | 35.0% |
| AACATACCTTCAGAGTTCAT+GGG | + | chr7_1:45012397-45012416 | None:intergenic | 35.0% | |
| ! | ATGAACTCTGAAGGTATGTT+GGG | - | chr7_1:45012397-45012416 | Msa1020940:CDS | 35.0% |
| AATGAAACACCCTCATTCAA+TGG | - | chr7_1:45012465-45012484 | Msa1020940:CDS | 35.0% | |
| CATCTGAATCCATTGAATGA+GGG | + | chr7_1:45012477-45012496 | None:intergenic | 35.0% | |
| ACATCTGAATCCATTGAATG+AGG | + | chr7_1:45012478-45012497 | None:intergenic | 35.0% | |
| AAATCAGCAACAAGTCATCA+AGG | - | chr7_1:45012538-45012557 | Msa1020940:CDS | 35.0% | |
| AATCAGCAACAAGTCATCAA+GGG | - | chr7_1:45012539-45012558 | Msa1020940:CDS | 35.0% | |
| GGAAAAAGTGGATGGAATTA+TGG | + | chr7_1:45010447-45010466 | None:intergenic | 35.0% | |
| ! | GAAAATCTGGGAATTTTCTC+GGG | + | chr7_1:45010468-45010487 | None:intergenic | 35.0% |
| GCAAAATTAACTATGAGGGT+AGG | + | chr7_1:45010593-45010612 | None:intergenic | 35.0% | |
| !! | AGTTGTGTTTTTGTATCACG+GGG | - | chr7_1:45010637-45010656 | Msa1020940:intron | 35.0% |
| ! | GTGATTTAAGGTTTGATCCA+AGG | - | chr7_1:45010662-45010681 | Msa1020940:intron | 35.0% |
| AAAACATACAAGAAGCTCCT+TGG | + | chr7_1:45010682-45010701 | None:intergenic | 35.0% | |
| !! | ACCACAAGTTTCTTTGAAGT+TGG | - | chr7_1:45011188-45011207 | Msa1020940:intron | 35.0% |
| !! | CCACAAGTTTCTTTGAAGTT+GGG | - | chr7_1:45011189-45011208 | Msa1020940:intron | 35.0% |
| TTGGTTTCTGTGTTTGATCA+TGG | - | chr7_1:45011294-45011313 | Msa1020940:intron | 35.0% | |
| ! | TGTTTGTCTTGTTATGCTTC+AGG | - | chr7_1:45011363-45011382 | Msa1020940:intron | 35.0% |
| ! | GTTGTTAGTTTCTTACCTAC+TGG | + | chr7_1:45011479-45011498 | None:intergenic | 35.0% |
| AGCATCCTAAAACAATGAAC+TGG | + | chr7_1:45011578-45011597 | None:intergenic | 35.0% | |
| !! | AACAAATGAGAAGCATTCTG+AGG | - | chr7_1:45011756-45011775 | Msa1020940:intron | 35.0% |
| ! | TTTCGCTAGAGTATGTTTTG+AGG | - | chr7_1:45011828-45011847 | Msa1020940:intron | 35.0% |
| !! | TTCGCTAGAGTATGTTTTGA+GGG | - | chr7_1:45011829-45011848 | Msa1020940:intron | 35.0% |
| ! | TATATATGGATGGAGGGTTT+TGG | + | chr7_1:45011999-45012018 | None:intergenic | 35.0% |
| AACATACCTTCAGAGTTCAT+GGG | + | chr7_1:45012397-45012416 | None:intergenic | 35.0% | |
| ! | ATGAACTCTGAAGGTATGTT+GGG | - | chr7_1:45012397-45012416 | Msa1020940:CDS | 35.0% |
| AATGAAACACCCTCATTCAA+TGG | - | chr7_1:45012465-45012484 | Msa1020940:CDS | 35.0% | |
| CATCTGAATCCATTGAATGA+GGG | + | chr7_1:45012477-45012496 | None:intergenic | 35.0% | |
| ACATCTGAATCCATTGAATG+AGG | + | chr7_1:45012478-45012497 | None:intergenic | 35.0% | |
| AAATCAGCAACAAGTCATCA+AGG | - | chr7_1:45012538-45012557 | Msa1020940:CDS | 35.0% | |
| GTGGATGGAATTATGGAACT+TGG | + | chr7_1:45010440-45010459 | None:intergenic | 40.0% | |
| ! | TTTTCTCGGGAAAAAGTGGA+TGG | + | chr7_1:45010455-45010474 | None:intergenic | 40.0% |
| ! | GGAATTTTCTCGGGAAAAAG+TGG | + | chr7_1:45010459-45010478 | None:intergenic | 40.0% |
| AGAGAACAGCGAGAAAATCT+GGG | + | chr7_1:45010480-45010499 | None:intergenic | 40.0% | |
| TATCACGGGGTTGTGATTTA+AGG | - | chr7_1:45010650-45010669 | Msa1020940:intron | 40.0% | |
| CCCAACTTCAAAGAAACTTG+TGG | + | chr7_1:45011192-45011211 | None:intergenic | 40.0% | |
| TGTCAGTATGAAGCCAACTT+TGG | - | chr7_1:45011214-45011233 | Msa1020940:CDS | 40.0% | |
| GTCAGTATGAAGCCAACTTT+GGG | - | chr7_1:45011215-45011234 | Msa1020940:CDS | 40.0% | |
| TGGGTCAAGCTCAAAGTAAT+TGG | - | chr7_1:45011234-45011253 | Msa1020940:intron | 40.0% | |
| GGGTCAAGCTCAAAGTAATT+GGG | - | chr7_1:45011235-45011254 | Msa1020940:intron | 40.0% | |
| ! | CAACACTGCGAAAGCTTTTA+TGG | - | chr7_1:45011430-45011449 | Msa1020940:intron | 40.0% |
| ! | AGCTTTTATGGCAGAAGGAA+AGG | - | chr7_1:45011442-45011461 | Msa1020940:CDS | 40.0% |
| AAGGTTTCAACTGATCCAGT+AGG | - | chr7_1:45011461-45011480 | Msa1020940:CDS | 40.0% | |
| ! | TTGATAGCAATTGATGCACC+TGG | - | chr7_1:45011682-45011701 | Msa1020940:CDS | 40.0% |
| !! | TCGCTAGAGTATGTTTTGAG+GGG | - | chr7_1:45011830-45011849 | Msa1020940:intron | 40.0% |
| AATCATAACCTCCACTCACT+AGG | + | chr7_1:45012080-45012099 | None:intergenic | 40.0% | |
| !! | AATGTTGGTTGGTAGCAAAC+TGG | - | chr7_1:45012214-45012233 | Msa1020940:intron | 40.0% |
| TTGGTAGACACAGCAAACAA+AGG | - | chr7_1:45012267-45012286 | Msa1020940:intron | 40.0% | |
| ACATACCTTCAGAGTTCATG+GGG | + | chr7_1:45012396-45012415 | None:intergenic | 40.0% | |
| CAACATACCTTCAGAGTTCA+TGG | + | chr7_1:45012398-45012417 | None:intergenic | 40.0% | |
| ! | CATGAACTCTGAAGGTATGT+TGG | - | chr7_1:45012396-45012415 | Msa1020940:CDS | 40.0% |
| ! | TGAACTCTGAAGGTATGTTG+GGG | - | chr7_1:45012398-45012417 | Msa1020940:CDS | 40.0% |
| GTGGATGGAATTATGGAACT+TGG | + | chr7_1:45010440-45010459 | None:intergenic | 40.0% | |
| ! | TTTTCTCGGGAAAAAGTGGA+TGG | + | chr7_1:45010455-45010474 | None:intergenic | 40.0% |
| ! | GGAATTTTCTCGGGAAAAAG+TGG | + | chr7_1:45010459-45010478 | None:intergenic | 40.0% |
| AGAGAACAGCGAGAAAATCT+GGG | + | chr7_1:45010480-45010499 | None:intergenic | 40.0% | |
| TATCACGGGGTTGTGATTTA+AGG | - | chr7_1:45010650-45010669 | Msa1020940:intron | 40.0% | |
| CCCAACTTCAAAGAAACTTG+TGG | + | chr7_1:45011192-45011211 | None:intergenic | 40.0% | |
| TGTCAGTATGAAGCCAACTT+TGG | - | chr7_1:45011214-45011233 | Msa1020940:CDS | 40.0% | |
| GTCAGTATGAAGCCAACTTT+GGG | - | chr7_1:45011215-45011234 | Msa1020940:CDS | 40.0% | |
| TGGGTCAAGCTCAAAGTAAT+TGG | - | chr7_1:45011234-45011253 | Msa1020940:intron | 40.0% | |
| GGGTCAAGCTCAAAGTAATT+GGG | - | chr7_1:45011235-45011254 | Msa1020940:intron | 40.0% | |
| ! | CAACACTGCGAAAGCTTTTA+TGG | - | chr7_1:45011430-45011449 | Msa1020940:intron | 40.0% |
| ! | AGCTTTTATGGCAGAAGGAA+AGG | - | chr7_1:45011442-45011461 | Msa1020940:CDS | 40.0% |
| AAGGTTTCAACTGATCCAGT+AGG | - | chr7_1:45011461-45011480 | Msa1020940:CDS | 40.0% | |
| ! | TTGATAGCAATTGATGCACC+TGG | - | chr7_1:45011682-45011701 | Msa1020940:CDS | 40.0% |
| !! | TCGCTAGAGTATGTTTTGAG+GGG | - | chr7_1:45011830-45011849 | Msa1020940:intron | 40.0% |
| AATCATAACCTCCACTCACT+AGG | + | chr7_1:45012080-45012099 | None:intergenic | 40.0% | |
| !! | AATGTTGGTTGGTAGCAAAC+TGG | - | chr7_1:45012214-45012233 | Msa1020940:intron | 40.0% |
| TTGGTAGACACAGCAAACAA+AGG | - | chr7_1:45012267-45012286 | Msa1020940:intron | 40.0% | |
| ACATACCTTCAGAGTTCATG+GGG | + | chr7_1:45012396-45012415 | None:intergenic | 40.0% | |
| CAACATACCTTCAGAGTTCA+TGG | + | chr7_1:45012398-45012417 | None:intergenic | 40.0% | |
| ! | CATGAACTCTGAAGGTATGT+TGG | - | chr7_1:45012396-45012415 | Msa1020940:CDS | 40.0% |
| ! | TGAACTCTGAAGGTATGTTG+GGG | - | chr7_1:45012398-45012417 | Msa1020940:CDS | 40.0% |
| GAGAGAACAGCGAGAAAATC+TGG | + | chr7_1:45010481-45010500 | None:intergenic | 45.0% | |
| CTTTGAGCTTGACCCAAAGT+TGG | + | chr7_1:45011230-45011249 | None:intergenic | 45.0% | |
| ! | GCGAAAGCTTTTATGGCAGA+AGG | - | chr7_1:45011437-45011456 | Msa1020940:intron | 45.0% |
| ATAGCAATTGATGCACCTGG+AGG | - | chr7_1:45011685-45011704 | Msa1020940:CDS | 45.0% | |
| CACTCAAACAGAAATCCTCC+AGG | + | chr7_1:45011703-45011722 | None:intergenic | 45.0% | |
| CTGGAGGATTTCTGTTTGAG+TGG | - | chr7_1:45011701-45011720 | Msa1020940:CDS | 45.0% | |
| GAGGATTTCTGTTTGAGTGG+TGG | - | chr7_1:45011704-45011723 | Msa1020940:CDS | 45.0% | |
| !!! | CTAGAGTATGTTTTGAGGGG+AGG | - | chr7_1:45011833-45011852 | Msa1020940:intron | 45.0% |
| !! | ATATGGATGGAGGGTTTTGG+AGG | + | chr7_1:45011996-45012015 | None:intergenic | 45.0% |
| TAAGGTTTCTGCCTAGTGAG+TGG | - | chr7_1:45012066-45012085 | Msa1020940:intron | 45.0% | |
| TAACCTCTCCATACTCCACT+TGG | - | chr7_1:45012153-45012172 | Msa1020940:intron | 45.0% | |
| CGAAGAGATCCTAATCATCC+TGG | - | chr7_1:45012352-45012371 | Msa1020940:intron | 45.0% | |
| AGATCCTAATCATCCTGGAC+TGG | - | chr7_1:45012357-45012376 | Msa1020940:intron | 45.0% | |
| GATCCTAATCATCCTGGACT+GGG | - | chr7_1:45012358-45012377 | Msa1020940:intron | 45.0% | |
| TTGAACCCCATGAACTCTGA+AGG | - | chr7_1:45012388-45012407 | Msa1020940:CDS | 45.0% | |
| GAGAGAACAGCGAGAAAATC+TGG | + | chr7_1:45010481-45010500 | None:intergenic | 45.0% | |
| CTTTGAGCTTGACCCAAAGT+TGG | + | chr7_1:45011230-45011249 | None:intergenic | 45.0% | |
| ! | GCGAAAGCTTTTATGGCAGA+AGG | - | chr7_1:45011437-45011456 | Msa1020940:intron | 45.0% |
| ATAGCAATTGATGCACCTGG+AGG | - | chr7_1:45011685-45011704 | Msa1020940:CDS | 45.0% | |
| CACTCAAACAGAAATCCTCC+AGG | + | chr7_1:45011703-45011722 | None:intergenic | 45.0% | |
| CTGGAGGATTTCTGTTTGAG+TGG | - | chr7_1:45011701-45011720 | Msa1020940:CDS | 45.0% | |
| GAGGATTTCTGTTTGAGTGG+TGG | - | chr7_1:45011704-45011723 | Msa1020940:CDS | 45.0% | |
| !!! | CTAGAGTATGTTTTGAGGGG+AGG | - | chr7_1:45011833-45011852 | Msa1020940:intron | 45.0% |
| !! | ATATGGATGGAGGGTTTTGG+AGG | + | chr7_1:45011996-45012015 | None:intergenic | 45.0% |
| TAAGGTTTCTGCCTAGTGAG+TGG | - | chr7_1:45012066-45012085 | Msa1020940:intron | 45.0% | |
| TAACCTCTCCATACTCCACT+TGG | - | chr7_1:45012153-45012172 | Msa1020940:intron | 45.0% | |
| CGAAGAGATCCTAATCATCC+TGG | - | chr7_1:45012352-45012371 | Msa1020940:intron | 45.0% | |
| AGATCCTAATCATCCTGGAC+TGG | - | chr7_1:45012357-45012376 | Msa1020940:intron | 45.0% | |
| GATCCTAATCATCCTGGACT+GGG | - | chr7_1:45012358-45012377 | Msa1020940:intron | 45.0% | |
| TTGAACCCCATGAACTCTGA+AGG | - | chr7_1:45012388-45012407 | Msa1020940:CDS | 45.0% | |
| ! | TTGAGTGGTGGTCCGTCTTT+TGG | - | chr7_1:45011716-45011735 | Msa1020940:CDS | 50.0% |
| ! | TGAGTGGTGGTCCGTCTTTT+GGG | - | chr7_1:45011717-45011736 | Msa1020940:CDS | 50.0% |
| GGCTGCTGCATCTTACATTG+AGG | - | chr7_1:45011777-45011796 | Msa1020940:intron | 50.0% | |
| AGGCAGAAACCTTAGCGTTG+CGG | + | chr7_1:45012060-45012079 | None:intergenic | 50.0% | |
| ! | AACAGCCTCTCTGCTTGTTG+AGG | - | chr7_1:45012112-45012131 | Msa1020940:intron | 50.0% |
| ! | ACAGCCTCTCTGCTTGTTGA+GGG | - | chr7_1:45012113-45012132 | Msa1020940:intron | 50.0% |
| TTACCCCTCAACAAGCAGAG+AGG | + | chr7_1:45012120-45012139 | None:intergenic | 50.0% | |
| ! | TCTCTGCTTGTTGAGGGGTA+AGG | - | chr7_1:45012119-45012138 | Msa1020940:intron | 50.0% |
| CTCTCCATACTCCACTTGGT+GGG | - | chr7_1:45012157-45012176 | Msa1020940:intron | 50.0% | |
| TTCAAAGAACCACCCAGTCC+AGG | + | chr7_1:45012373-45012392 | None:intergenic | 50.0% | |
| TTCATGGCCAATGCACTTGC+TGG | + | chr7_1:45012430-45012449 | None:intergenic | 50.0% | |
| ! | TTGAGTGGTGGTCCGTCTTT+TGG | - | chr7_1:45011716-45011735 | Msa1020940:CDS | 50.0% |
| ! | TGAGTGGTGGTCCGTCTTTT+GGG | - | chr7_1:45011717-45011736 | Msa1020940:CDS | 50.0% |
| GGCTGCTGCATCTTACATTG+AGG | - | chr7_1:45011777-45011796 | Msa1020940:intron | 50.0% | |
| AGGCAGAAACCTTAGCGTTG+CGG | + | chr7_1:45012060-45012079 | None:intergenic | 50.0% | |
| ! | AACAGCCTCTCTGCTTGTTG+AGG | - | chr7_1:45012112-45012131 | Msa1020940:intron | 50.0% |
| ! | ACAGCCTCTCTGCTTGTTGA+GGG | - | chr7_1:45012113-45012132 | Msa1020940:intron | 50.0% |
| TTACCCCTCAACAAGCAGAG+AGG | + | chr7_1:45012120-45012139 | None:intergenic | 50.0% | |
| ! | TCTCTGCTTGTTGAGGGGTA+AGG | - | chr7_1:45012119-45012138 | Msa1020940:intron | 50.0% |
| CTCTCCATACTCCACTTGGT+GGG | - | chr7_1:45012157-45012176 | Msa1020940:intron | 50.0% | |
| TTCAAAGAACCACCCAGTCC+AGG | + | chr7_1:45012373-45012392 | None:intergenic | 50.0% | |
| TTCATGGCCAATGCACTTGC+TGG | + | chr7_1:45012430-45012449 | None:intergenic | 50.0% | |
| GAAACCTTAGCGTTGCGGCA+AGG | + | chr7_1:45012055-45012074 | None:intergenic | 55.0% | |
| GGTTTCTGCCTAGTGAGTGG+AGG | - | chr7_1:45012069-45012088 | Msa1020940:intron | 55.0% | |
| ! | CAGCCTCTCTGCTTGTTGAG+GGG | - | chr7_1:45012114-45012133 | Msa1020940:intron | 55.0% |
| CCACCAAGTGGAGTATGGAG+AGG | + | chr7_1:45012159-45012178 | None:intergenic | 55.0% | |
| CCTCTCCATACTCCACTTGG+TGG | - | chr7_1:45012156-45012175 | Msa1020940:intron | 55.0% | |
| GGTTCCCACCAAGTGGAGTA+TGG | + | chr7_1:45012164-45012183 | None:intergenic | 55.0% | |
| CCACCCAGTCCAGGATGATT+AGG | + | chr7_1:45012364-45012383 | None:intergenic | 55.0% | |
| ! | CCTAATCATCCTGGACTGGG+TGG | - | chr7_1:45012361-45012380 | Msa1020940:intron | 55.0% |
| ! | ATGGCCAATGCACTTGCTGG+TGG | + | chr7_1:45012427-45012446 | None:intergenic | 55.0% |
| GAAACCTTAGCGTTGCGGCA+AGG | + | chr7_1:45012055-45012074 | None:intergenic | 55.0% | |
| GGTTTCTGCCTAGTGAGTGG+AGG | - | chr7_1:45012069-45012088 | Msa1020940:intron | 55.0% | |
| ! | CAGCCTCTCTGCTTGTTGAG+GGG | - | chr7_1:45012114-45012133 | Msa1020940:intron | 55.0% |
| CCACCAAGTGGAGTATGGAG+AGG | + | chr7_1:45012159-45012178 | None:intergenic | 55.0% | |
| CCTCTCCATACTCCACTTGG+TGG | - | chr7_1:45012156-45012175 | Msa1020940:intron | 55.0% | |
| GGTTCCCACCAAGTGGAGTA+TGG | + | chr7_1:45012164-45012183 | None:intergenic | 55.0% | |
| CCACCCAGTCCAGGATGATT+AGG | + | chr7_1:45012364-45012383 | None:intergenic | 55.0% | |
| ! | CCTAATCATCCTGGACTGGG+TGG | - | chr7_1:45012361-45012380 | Msa1020940:intron | 55.0% |
| ! | ATGGCCAATGCACTTGCTGG+TGG | + | chr7_1:45012427-45012446 | None:intergenic | 55.0% |
| TAAAAGTGGCCCAGCGCACG+AGG | + | chr7_1:45012185-45012204 | None:intergenic | 60.0% | |
| GCAGCCACCAGCAAGTGCAT+TGG | - | chr7_1:45012420-45012439 | Msa1020940:CDS | 60.0% | |
| TAAAAGTGGCCCAGCGCACG+AGG | + | chr7_1:45012185-45012204 | None:intergenic | 60.0% | |
| GCAGCCACCAGCAAGTGCAT+TGG | - | chr7_1:45012420-45012439 | Msa1020940:CDS | 60.0% | |
| CGAGCCTTGCCGCAACGCTA+AGG | - | chr7_1:45012048-45012067 | Msa1020940:intron | 65.0% | |
| CGCACGAGGTTCCCACCAAG+TGG | + | chr7_1:45012171-45012190 | None:intergenic | 65.0% | |
| TTGGTGGGAACCTCGTGCGC+TGG | - | chr7_1:45012172-45012191 | Msa1020940:intron | 65.0% | |
| TGGTGGGAACCTCGTGCGCT+GGG | - | chr7_1:45012173-45012192 | Msa1020940:intron | 65.0% | |
| CGAGCCTTGCCGCAACGCTA+AGG | - | chr7_1:45012048-45012067 | Msa1020940:intron | 65.0% | |
| CGCACGAGGTTCCCACCAAG+TGG | + | chr7_1:45012171-45012190 | None:intergenic | 65.0% | |
| TTGGTGGGAACCTCGTGCGC+TGG | - | chr7_1:45012172-45012191 | Msa1020940:intron | 65.0% | |
| TGGTGGGAACCTCGTGCGCT+GGG | - | chr7_1:45012173-45012192 | Msa1020940:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 45010362 | 45012561 | 45010362 | ID=Msa1020940;Name=Msa1020940 |
| chr7_1 | mRNA | 45010362 | 45012561 | 45010362 | ID=Msa1020940-mRNA-1;Parent=Msa1020940;Name=Msa1020940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.75|0.6|1|0.5|0.4|5|0|238 |
| chr7_1 | exon | 45010362 | 45010643 | 45010362 | ID=Msa1020940-mRNA-1:exon:8850;Parent=Msa1020940-mRNA-1 |
| chr7_1 | exon | 45011194 | 45011234 | 45011194 | ID=Msa1020940-mRNA-1:exon:8849;Parent=Msa1020940-mRNA-1 |
| chr7_1 | exon | 45011441 | 45011538 | 45011441 | ID=Msa1020940-mRNA-1:exon:8848;Parent=Msa1020940-mRNA-1 |
| chr7_1 | exon | 45011653 | 45011750 | 45011653 | ID=Msa1020940-mRNA-1:exon:8847;Parent=Msa1020940-mRNA-1 |
| chr7_1 | exon | 45012367 | 45012561 | 45012367 | ID=Msa1020940-mRNA-1:exon:8846;Parent=Msa1020940-mRNA-1 |
| chr7_1 | CDS | 45012367 | 45012561 | 45012367 | ID=Msa1020940-mRNA-1:cds;Parent=Msa1020940-mRNA-1 |
| chr7_1 | CDS | 45011653 | 45011750 | 45011653 | ID=Msa1020940-mRNA-1:cds;Parent=Msa1020940-mRNA-1 |
| chr7_1 | CDS | 45011441 | 45011538 | 45011441 | ID=Msa1020940-mRNA-1:cds;Parent=Msa1020940-mRNA-1 |
| chr7_1 | CDS | 45011194 | 45011234 | 45011194 | ID=Msa1020940-mRNA-1:cds;Parent=Msa1020940-mRNA-1 |
| chr7_1 | CDS | 45010362 | 45010643 | 45010362 | ID=Msa1020940-mRNA-1:cds;Parent=Msa1020940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
